AlfalfaGEDB | Msa0131570

M. sativa cultivar zhongmu-4 / Msa0131570

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0131570	XP_003591977.1	80.349	229	38	2	1	222	1	229	3.33e-110	325

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0131570	sp\|Q9LQR0\|LBD1_ARATH	65.333	150	43	5	77	222	45	189	2.42e-57	182

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0131570	G7I9N1	80.349	229	38	2	1	222	1	229	1.59e-110	325

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TFs/TRs:

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Gene ID	Type	Classification
Msa0131570	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0069450	Msa0131570	0.938493	6.146323e-99	-8.615850e-47
Msa0131480	Msa0131570	0.957246	4.306744e-115	-8.615850e-47
Msa0131570	Msa0177350	0.941765	2.350895e-101	-8.615850e-47
Msa0131570	Msa0581590	0.955094	6.672565e-113	-8.615850e-47
Msa0131570	Msa0660580	0.953759	1.349531e-111	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0131570	MtrunA17_Chr1g0200201	80.349	229	38	2	1	222	1	229	3.06e-114	325
Msa0131570	MtrunA17_Chr4g0030001	56.784	199	65	7	34	222	3	190	1.22e-63	196
Msa0131570	MtrunA17_Chr2g0326051	63.200	125	38	4	106	222	1	125	1.28e-44	145
Msa0131570	MtrunA17_Chr2g0311601	64.220	109	39	0	64	172	12	120	5.51e-42	139
Msa0131570	MtrunA17_Chr3g0114061	70.000	90	27	0	77	166	20	109	6.84e-39	132
Msa0131570	MtrunA17_Chr5g0437571	65.957	94	32	0	83	176	24	117	1.67e-38	131
Msa0131570	MtrunA17_Chr4g0043421	67.778	90	29	0	83	172	33	122	2.21e-38	131
Msa0131570	MtrunA17_Chr3g0106101	65.217	92	32	0	81	172	23	114	2.43e-37	128
Msa0131570	MtrunA17_Chr3g0117121	47.899	119	53	2	50	168	4	113	7.83e-30	109
Msa0131570	MtrunA17_Chr5g0438091	53.191	94	44	0	83	176	57	150	1.37e-29	109

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0131570	AT1G07900.1	65.333	150	43	5	77	222	45	189	2.46e-58	182
Msa0131570	AT2G28500.1	61.111	162	43	4	81	222	71	232	8.03e-55	175
Msa0131570	AT2G30130.1	66.316	95	32	0	77	171	20	114	1.84e-38	132
Msa0131570	AT1G16530.1	64.773	88	31	0	81	168	31	118	5.15e-36	125
Msa0131570	AT1G31320.1	59.091	110	45	0	64	173	12	121	5.36e-31	112
Msa0131570	AT5G63090.4	58.824	85	35	0	81	165	27	111	1.39e-29	109
Msa0131570	AT5G63090.3	58.824	85	35	0	81	165	27	111	1.39e-29	109
Msa0131570	AT5G63090.2	58.824	85	35	0	81	165	27	111	1.39e-29	109
Msa0131570	AT5G63090.1	58.824	85	35	0	81	165	27	111	1.39e-29	109
Msa0131570	AT3G27650.1	56.322	87	38	0	81	167	55	141	8.47e-29	106

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Find 68 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTGTGGGAGATTGTAA+AGG	0.533363	1_3:+62444014	None:intergenic
AACTCATATCAACATGAGGT+TGG	0.513338	1_3:+62442646	None:intergenic
AACTTGAGTGGATCAGTTGG+AGG	0.595286	1_3:+62443847	None:intergenic
AAGCAACTCATATCAACATG+AGG	0.663119	1_3:+62442642	None:intergenic
AATAATGGTGGTGGAGGAGA+TGG	0.486272	1_3:+62443942	None:intergenic
AATATTGAGAAGCTGGTGAA+GGG	0.602247	1_3:+62443991	None:intergenic
AATGGTGGTGGAGGAGATGG+TGG	0.548964	1_3:+62443945	None:intergenic
AATTAATTTCATGTCCAAAG+AGG	0.542951	1_3:+62442585	None:intergenic
AATTTCCAAACTCCAAGTGG+AGG	0.632065	1_3:-62442453	Msa0131570:three_prime_UTR
ACAAGGGCTAACAATAATGG+TGG	0.670416	1_3:+62443930	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGATGGAAAAGATAACAAA+AGG	-	chr1_3:62443056-62443075	Msa0131570:intron	30.0%
AAGATATAGTGGTTACACTA+TGG	+	chr1_3:62443296-62443315	None:intergenic	30.0%
GGTAGTTCCTGAAAAATTAA+TGG	+	chr1_3:62443637-62443656	None:intergenic	30.0%
TGGATGGAAAAGATAACAAA+AGG	-	chr1_3:62443056-62443075	Msa0131570:intron	30.0%
AAGATATAGTGGTTACACTA+TGG	+	chr1_3:62443296-62443315	None:intergenic	30.0%
GGTAGTTCCTGAAAAATTAA+TGG	+	chr1_3:62443637-62443656	None:intergenic	30.0%
TGTGAATGGGAACATGAATT+GGG	+	chr1_3:62442477-62442496	None:intergenic	35.0%
AATATTGAGAAGCTGGTGAA+GGG	+	chr1_3:62442567-62442586	None:intergenic	35.0%
CAACATCATTAAGTTCTTGC+AGG	-	chr1_3:62442761-62442780	Msa0131570:CDS	35.0%
TGTCTAACGATTATGGTCAA+TGG	-	chr1_3:62443366-62443385	Msa0131570:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	62442427	62444150	62442427	ID=Msa0131570;Name=Msa0131570
chr1_3	mRNA	62442427	62444150	62442427	ID=Msa0131570-mRNA-1;Parent=Msa0131570;Name=Msa0131570-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0.5\|0.33\|1\|1\|1\|3\|166\|222
chr1_3	exon	62442427	62442928	62442427	ID=Msa0131570-mRNA-1:exon:20805;Parent=Msa0131570-mRNA-1
chr1_3	exon	62443795	62443880	62443795	ID=Msa0131570-mRNA-1:exon:20804;Parent=Msa0131570-mRNA-1
chr1_3	exon	62443904	62444150	62443904	ID=Msa0131570-mRNA-1:exon:20803;Parent=Msa0131570-mRNA-1
chr1_3	CDS	62443904	62444150	62443904	ID=Msa0131570-mRNA-1:cds;Parent=Msa0131570-mRNA-1
chr1_3	CDS	62443795	62443880	62443795	ID=Msa0131570-mRNA-1:cds;Parent=Msa0131570-mRNA-1
chr1_3	CDS	62442593	62442928	62442593	ID=Msa0131570-mRNA-1:cds;Parent=Msa0131570-mRNA-1
chr1_3	three_prime_UTR	62442427	62442592	62442427	ID=Msa0131570-mRNA-1:three_prime_utr;Parent=Msa0131570-mRNA-1

Gene Sequence

>Msa0131570

ATGGAACACAAAATGAAAACCACTACTTCTCCTCCTCATCTACCAATCCCAATTCATGTTCCCATTCACACCATGCTATCAAACTCTACTACACCATCTTCATCTTCTTCACCTCCTTTACAATCTCCCACACCTTTCCCTTCACCAGCTTCTCAATATTCTCCTCCCTCGGCCGCTCCTCAACCACCATCTCCTCCACCACCATTATTGTTAGCCCTTGTGCTGCCTGCAAGATTCTCCGTCGCAGCTCCGTATTTTCCTCCAACTGATCCACTCAAGTTCACCATTGCTCATAGAGTCTTTGGAGCTAGCAACATCATTAAGTTCTTGCAGGAACTACCTGAACCTCAGAGAGCAGATGCAGTAAGCAGCATGGTTTATGAAGCAAATGCTAGGATAAGGGACCCAGTTTATGGGTGTGCAGGTGCAATATGTCAACTTCAAAAACAAGTTAGTGAGTTACAAACACAGCTAGCCAAAGCACAAGCTGAGCTAGTGAACATGCATTGCCAACAAGCAAATTTAGTGGCACTAATTTGCATGGAAATGAGTACTCAGTCATCACCAGACCATGACATGATGATTAATCAGCCCCAACCTCATGTTGATATGAGTTGCTTTTTAGAGGACAACAATTTTGGGTCTGCTTGGGAGCCTCTTTGGACATGA

Protein sequence

>Msa0131570

MEHKMKTTTSPPHLPIPIHVPIHTMLSNSTTPSSSSSPPLQSPTPFPSPASQYSPPSAAPQPPSPPPPLLLALVLPARFSVAAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPEPQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQTQLAKAQAELVNMHCQQANLVALICMEMSTQSSPDHDMMINQPQPHVDMSCFLEDNNFGSAWEPLWT*