Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131570 | XP_003591977.1 | 80.349 | 229 | 38 | 2 | 1 | 222 | 1 | 229 | 3.33e-110 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131570 | sp|Q9LQR0|LBD1_ARATH | 65.333 | 150 | 43 | 5 | 77 | 222 | 45 | 189 | 2.42e-57 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131570 | G7I9N1 | 80.349 | 229 | 38 | 2 | 1 | 222 | 1 | 229 | 1.59e-110 | 325 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0131570 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069450 | Msa0131570 | 0.938493 | 6.146323e-99 | -8.615850e-47 |
| Msa0131480 | Msa0131570 | 0.957246 | 4.306744e-115 | -8.615850e-47 |
| Msa0131570 | Msa0177350 | 0.941765 | 2.350895e-101 | -8.615850e-47 |
| Msa0131570 | Msa0581590 | 0.955094 | 6.672565e-113 | -8.615850e-47 |
| Msa0131570 | Msa0660580 | 0.953759 | 1.349531e-111 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131570 | MtrunA17_Chr1g0200201 | 80.349 | 229 | 38 | 2 | 1 | 222 | 1 | 229 | 3.06e-114 | 325 |
| Msa0131570 | MtrunA17_Chr4g0030001 | 56.784 | 199 | 65 | 7 | 34 | 222 | 3 | 190 | 1.22e-63 | 196 |
| Msa0131570 | MtrunA17_Chr2g0326051 | 63.200 | 125 | 38 | 4 | 106 | 222 | 1 | 125 | 1.28e-44 | 145 |
| Msa0131570 | MtrunA17_Chr2g0311601 | 64.220 | 109 | 39 | 0 | 64 | 172 | 12 | 120 | 5.51e-42 | 139 |
| Msa0131570 | MtrunA17_Chr3g0114061 | 70.000 | 90 | 27 | 0 | 77 | 166 | 20 | 109 | 6.84e-39 | 132 |
| Msa0131570 | MtrunA17_Chr5g0437571 | 65.957 | 94 | 32 | 0 | 83 | 176 | 24 | 117 | 1.67e-38 | 131 |
| Msa0131570 | MtrunA17_Chr4g0043421 | 67.778 | 90 | 29 | 0 | 83 | 172 | 33 | 122 | 2.21e-38 | 131 |
| Msa0131570 | MtrunA17_Chr3g0106101 | 65.217 | 92 | 32 | 0 | 81 | 172 | 23 | 114 | 2.43e-37 | 128 |
| Msa0131570 | MtrunA17_Chr3g0117121 | 47.899 | 119 | 53 | 2 | 50 | 168 | 4 | 113 | 7.83e-30 | 109 |
| Msa0131570 | MtrunA17_Chr5g0438091 | 53.191 | 94 | 44 | 0 | 83 | 176 | 57 | 150 | 1.37e-29 | 109 |
| Msa0131570 | MtrunA17_Chr4g0058651 | 56.322 | 87 | 38 | 0 | 81 | 167 | 27 | 113 | 4.16e-29 | 107 |
| Msa0131570 | MtrunA17_Chr3g0115431 | 56.471 | 85 | 37 | 0 | 81 | 165 | 25 | 109 | 6.03e-29 | 108 |
| Msa0131570 | MtrunA17_Chr6g0449641 | 48.980 | 98 | 50 | 0 | 81 | 178 | 25 | 122 | 1.44e-28 | 105 |
| Msa0131570 | MtrunA17_Chr7g0227511 | 46.903 | 113 | 46 | 2 | 81 | 193 | 27 | 125 | 1.55e-28 | 105 |
| Msa0131570 | MtrunA17_Chr3g0129071 | 52.747 | 91 | 43 | 0 | 83 | 173 | 65 | 155 | 7.04e-28 | 105 |
| Msa0131570 | MtrunA17_Chr5g0402611 | 55.294 | 85 | 38 | 0 | 81 | 165 | 24 | 108 | 2.01e-26 | 103 |
| Msa0131570 | MtrunA17_Chr5g0437401 | 54.118 | 85 | 39 | 0 | 81 | 165 | 27 | 111 | 4.09e-26 | 99.8 |
| Msa0131570 | MtrunA17_Chr6g0449651 | 52.326 | 86 | 41 | 0 | 81 | 166 | 83 | 168 | 5.00e-26 | 100 |
| Msa0131570 | MtrunA17_Chr3g0113891 | 56.250 | 80 | 35 | 0 | 83 | 162 | 32 | 111 | 1.12e-25 | 98.6 |
| Msa0131570 | MtrunA17_Chr5g0432451 | 57.143 | 91 | 39 | 0 | 83 | 173 | 61 | 151 | 1.15e-25 | 99.8 |
| Msa0131570 | MtrunA17_Chr3g0097221 | 54.217 | 83 | 38 | 0 | 83 | 165 | 25 | 107 | 2.95e-25 | 100 |
| Msa0131570 | MtrunA17_Chr7g0225111 | 43.617 | 94 | 51 | 1 | 81 | 172 | 21 | 114 | 2.82e-24 | 93.2 |
| Msa0131570 | MtrunA17_Chr8g0353981 | 56.627 | 83 | 36 | 0 | 83 | 165 | 25 | 107 | 1.64e-21 | 89.0 |
| Msa0131570 | MtrunA17_Chr7g0260971 | 48.837 | 86 | 43 | 1 | 81 | 165 | 30 | 115 | 3.98e-21 | 87.4 |
| Msa0131570 | MtrunA17_Chr8g0374601 | 45.783 | 83 | 45 | 0 | 83 | 165 | 44 | 126 | 1.33e-20 | 87.4 |
| Msa0131570 | MtrunA17_Chr8g0374591 | 44.706 | 85 | 47 | 0 | 81 | 165 | 24 | 108 | 3.87e-20 | 82.8 |
| Msa0131570 | MtrunA17_Chr5g0444351 | 38.824 | 85 | 52 | 0 | 81 | 165 | 21 | 105 | 6.56e-20 | 82.4 |
| Msa0131570 | MtrunA17_Chr8g0351721 | 48.315 | 89 | 45 | 1 | 81 | 168 | 34 | 122 | 1.08e-19 | 83.6 |
| Msa0131570 | MtrunA17_Chr7g0245871 | 46.512 | 86 | 45 | 1 | 81 | 165 | 43 | 128 | 1.10e-19 | 84.3 |
| Msa0131570 | MtrunA17_Chr1g0184281 | 48.276 | 87 | 44 | 1 | 81 | 166 | 31 | 117 | 1.13e-19 | 83.6 |
| Msa0131570 | MtrunA17_Chr8g0351701 | 46.512 | 86 | 45 | 1 | 81 | 165 | 39 | 124 | 1.79e-19 | 83.6 |
| Msa0131570 | MtrunA17_Chr6g0460951 | 42.000 | 100 | 55 | 2 | 81 | 178 | 56 | 154 | 3.41e-19 | 82.8 |
| Msa0131570 | MtrunA17_Chr1g0184271 | 49.438 | 89 | 42 | 2 | 78 | 163 | 25 | 113 | 1.10e-18 | 81.3 |
| Msa0131570 | MtrunA17_Chr8g0374581 | 41.667 | 84 | 49 | 0 | 83 | 166 | 27 | 110 | 1.49e-17 | 78.2 |
| Msa0131570 | MtrunA17_Chr6g0452691 | 39.796 | 98 | 54 | 2 | 83 | 175 | 27 | 124 | 1.55e-17 | 77.4 |
| Msa0131570 | MtrunA17_Chr7g0261031 | 46.988 | 83 | 43 | 1 | 78 | 159 | 21 | 103 | 3.29e-17 | 77.4 |
| Msa0131570 | MtrunA17_Chr5g0435641 | 44.304 | 79 | 43 | 1 | 81 | 158 | 23 | 101 | 1.49e-15 | 72.0 |
| Msa0131570 | MtrunA17_Chr6g0452661 | 39.091 | 110 | 56 | 3 | 78 | 179 | 22 | 128 | 3.44e-15 | 72.4 |
| Msa0131570 | MtrunA17_Chr4g0059901 | 39.759 | 83 | 50 | 0 | 83 | 165 | 28 | 110 | 4.41e-15 | 72.0 |
| Msa0131570 | MtrunA17_Chr6g0460941 | 43.056 | 72 | 40 | 1 | 81 | 151 | 23 | 94 | 7.70e-15 | 67.8 |
| Msa0131570 | MtrunA17_Chr7g0245861 | 45.946 | 74 | 38 | 1 | 80 | 151 | 28 | 101 | 6.30e-14 | 66.6 |
| Msa0131570 | MtrunA17_Chr6g0452671 | 37.778 | 90 | 54 | 1 | 83 | 172 | 29 | 116 | 6.02e-13 | 65.1 |
| Msa0131570 | MtrunA17_Chr4g0055441 | 36.735 | 98 | 51 | 3 | 83 | 175 | 20 | 111 | 7.30e-13 | 63.9 |
| Msa0131570 | MtrunA17_Chr4g0040831 | 35.897 | 78 | 50 | 0 | 81 | 158 | 31 | 108 | 1.37e-12 | 64.3 |
| Msa0131570 | MtrunA17_Chr2g0326041 | 51.163 | 86 | 35 | 2 | 26 | 111 | 1 | 79 | 3.98e-12 | 60.5 |
| Msa0131570 | MtrunA17_Chr8g0342351 | 34.118 | 85 | 56 | 0 | 81 | 165 | 28 | 112 | 3.10e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131570 | AT1G07900.1 | 65.333 | 150 | 43 | 5 | 77 | 222 | 45 | 189 | 2.46e-58 | 182 |
| Msa0131570 | AT2G28500.1 | 61.111 | 162 | 43 | 4 | 81 | 222 | 71 | 232 | 8.03e-55 | 175 |
| Msa0131570 | AT2G30130.1 | 66.316 | 95 | 32 | 0 | 77 | 171 | 20 | 114 | 1.84e-38 | 132 |
| Msa0131570 | AT1G16530.1 | 64.773 | 88 | 31 | 0 | 81 | 168 | 31 | 118 | 5.15e-36 | 125 |
| Msa0131570 | AT1G31320.1 | 59.091 | 110 | 45 | 0 | 64 | 173 | 12 | 121 | 5.36e-31 | 112 |
| Msa0131570 | AT5G63090.4 | 58.824 | 85 | 35 | 0 | 81 | 165 | 27 | 111 | 1.39e-29 | 109 |
| Msa0131570 | AT5G63090.3 | 58.824 | 85 | 35 | 0 | 81 | 165 | 27 | 111 | 1.39e-29 | 109 |
| Msa0131570 | AT5G63090.2 | 58.824 | 85 | 35 | 0 | 81 | 165 | 27 | 111 | 1.39e-29 | 109 |
| Msa0131570 | AT5G63090.1 | 58.824 | 85 | 35 | 0 | 81 | 165 | 27 | 111 | 1.39e-29 | 109 |
| Msa0131570 | AT3G27650.1 | 56.322 | 87 | 38 | 0 | 81 | 167 | 55 | 141 | 8.47e-29 | 106 |
| Msa0131570 | AT2G23660.2 | 57.471 | 87 | 37 | 0 | 81 | 167 | 21 | 107 | 1.18e-28 | 110 |
| Msa0131570 | AT2G23660.3 | 57.471 | 87 | 37 | 0 | 81 | 167 | 21 | 107 | 1.18e-28 | 110 |
| Msa0131570 | AT2G23660.1 | 57.471 | 87 | 37 | 0 | 81 | 167 | 21 | 107 | 1.18e-28 | 110 |
| Msa0131570 | AT3G26620.1 | 52.941 | 85 | 40 | 0 | 81 | 165 | 21 | 105 | 2.49e-28 | 103 |
| Msa0131570 | AT3G26660.1 | 52.941 | 85 | 40 | 0 | 81 | 165 | 21 | 105 | 2.52e-28 | 103 |
| Msa0131570 | AT2G30340.1 | 48.936 | 94 | 48 | 0 | 83 | 176 | 70 | 163 | 7.44e-28 | 107 |
| Msa0131570 | AT2G30340.2 | 48.936 | 94 | 48 | 0 | 83 | 176 | 71 | 164 | 8.89e-28 | 106 |
| Msa0131570 | AT3G11090.1 | 52.326 | 86 | 41 | 0 | 81 | 166 | 27 | 112 | 1.15e-26 | 100 |
| Msa0131570 | AT5G66870.1 | 55.294 | 85 | 38 | 0 | 81 | 165 | 23 | 107 | 2.43e-26 | 103 |
| Msa0131570 | AT2G40470.2 | 49.091 | 110 | 54 | 1 | 83 | 192 | 38 | 145 | 3.57e-25 | 98.2 |
| Msa0131570 | AT2G40470.1 | 49.091 | 110 | 54 | 1 | 83 | 192 | 63 | 170 | 7.31e-25 | 97.8 |
| Msa0131570 | AT1G65620.1 | 57.647 | 85 | 36 | 0 | 81 | 165 | 25 | 109 | 1.34e-22 | 91.3 |
| Msa0131570 | AT1G65620.4 | 57.647 | 85 | 36 | 0 | 81 | 165 | 25 | 109 | 1.34e-22 | 91.3 |
| Msa0131570 | AT1G65620.3 | 57.647 | 85 | 36 | 0 | 81 | 165 | 25 | 109 | 1.34e-22 | 91.3 |
| Msa0131570 | AT1G65620.5 | 57.647 | 85 | 36 | 0 | 81 | 165 | 25 | 109 | 1.34e-22 | 91.3 |
| Msa0131570 | AT1G65620.2 | 57.647 | 85 | 36 | 0 | 81 | 165 | 25 | 109 | 1.34e-22 | 91.3 |
| Msa0131570 | AT4G00210.1 | 52.326 | 86 | 40 | 1 | 81 | 165 | 27 | 112 | 9.38e-22 | 89.7 |
| Msa0131570 | AT4G00220.1 | 48.315 | 89 | 45 | 1 | 81 | 168 | 33 | 121 | 1.40e-21 | 89.4 |
| Msa0131570 | AT3G03760.1 | 44.211 | 95 | 52 | 1 | 81 | 174 | 67 | 161 | 8.09e-21 | 88.2 |
| Msa0131570 | AT2G45410.1 | 52.326 | 86 | 40 | 1 | 81 | 165 | 32 | 117 | 6.31e-20 | 84.3 |
| Msa0131570 | AT2G45420.1 | 46.067 | 89 | 47 | 1 | 81 | 168 | 53 | 141 | 9.19e-20 | 85.1 |
| Msa0131570 | AT2G42430.1 | 43.182 | 88 | 49 | 1 | 81 | 167 | 31 | 118 | 1.20e-17 | 79.3 |
| Msa0131570 | AT2G31310.1 | 44.706 | 85 | 46 | 1 | 81 | 164 | 23 | 107 | 2.86e-17 | 77.0 |
| Msa0131570 | AT5G35900.1 | 41.176 | 85 | 50 | 0 | 81 | 165 | 21 | 105 | 1.30e-16 | 75.5 |
| Msa0131570 | AT2G42440.1 | 49.367 | 79 | 39 | 1 | 81 | 158 | 23 | 101 | 5.27e-16 | 74.7 |
| Msa0131570 | AT1G72980.1 | 43.590 | 78 | 44 | 0 | 81 | 158 | 29 | 106 | 5.88e-16 | 73.9 |
| Msa0131570 | AT3G58190.1 | 45.783 | 83 | 44 | 1 | 77 | 158 | 23 | 105 | 1.28e-15 | 73.2 |
| Msa0131570 | AT5G06080.1 | 41.304 | 92 | 53 | 1 | 78 | 168 | 20 | 111 | 8.91e-15 | 70.1 |
| Msa0131570 | AT3G50510.1 | 40.000 | 85 | 51 | 0 | 81 | 165 | 28 | 112 | 3.33e-14 | 68.9 |
| Msa0131570 | AT3G50510.2 | 40.000 | 85 | 51 | 0 | 81 | 165 | 28 | 112 | 3.33e-14 | 68.9 |
| Msa0131570 | AT3G47870.1 | 37.349 | 83 | 52 | 0 | 83 | 165 | 54 | 136 | 1.51e-13 | 68.9 |
| Msa0131570 | AT3G13850.1 | 38.462 | 78 | 48 | 0 | 81 | 158 | 52 | 129 | 2.46e-13 | 67.8 |
Find 68 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCTGCTTGGGAGCCTCTT+TGG | 0.215297 | 1_3:-62442599 | Msa0131570:CDS |
| ACCATTGCTCATAGAGTCTT+TGG | 0.230237 | 1_3:-62443823 | Msa0131570:CDS |
| AGGATAAGGGACCCAGTTTA+TGG | 0.257729 | 1_3:-62442846 | Msa0131570:CDS |
| GTCTTCCTCCACTTGGAGTT+TGG | 0.282115 | 1_3:+62442448 | None:intergenic |
| GCACCTGCACACCCATAAAC+TGG | 0.308339 | 1_3:+62442834 | None:intergenic |
| CACTAGCTCAGCTTGTGCTT+TGG | 0.331624 | 1_3:+62442764 | None:intergenic |
| GCATCTGCTCTCTGAGGTTC+AGG | 0.338371 | 1_3:+62442900 | None:intergenic |
| CAACATCATTAAGTTCTTGC+AGG | 0.371270 | 1_3:-62443794 | Msa0131570:intron |
| GTGCCACTAAATTTGCTTGT+TGG | 0.373985 | 1_3:+62442730 | None:intergenic |
| GGTGGAGGAGATGGTGGTTG+AGG | 0.390187 | 1_3:+62443951 | None:intergenic |
| CCTGCGACGGAGAATCTTGC+AGG | 0.417127 | 1_3:+62443903 | None:intergenic |
| ATGAAGCAAATGCTAGGATA+AGG | 0.419747 | 1_3:-62442860 | Msa0131570:CDS |
| ACTCATATCAACATGAGGTT+GGG | 0.426563 | 1_3:+62442647 | None:intergenic |
| AGCACAAGGGCTAACAATAA+TGG | 0.430990 | 1_3:+62443927 | None:intergenic |
| TGGTGGTTGAGGAGCGGCCG+AGG | 0.441752 | 1_3:+62443962 | None:intergenic |
| CCTGCAAGATTCTCCGTCGC+AGG | 0.451176 | 1_3:-62443903 | Msa0131570:intron |
| GTGTGAATGGGAACATGAAT+TGG | 0.456087 | 1_3:+62444080 | None:intergenic |
| GGATAAGGGACCCAGTTTAT+GGG | 0.457995 | 1_3:-62442845 | Msa0131570:CDS |
| TTGCCAACAAGCAAATTTAG+TGG | 0.460480 | 1_3:-62442733 | Msa0131570:CDS |
| AGCTCTAGTCTTCCTCCACT+TGG | 0.483323 | 1_3:+62442441 | None:intergenic |
| AATAATGGTGGTGGAGGAGA+TGG | 0.486272 | 1_3:+62443942 | None:intergenic |
| GACCCAGTTTATGGGTGTGC+AGG | 0.487417 | 1_3:-62442837 | Msa0131570:CDS |
| GTTTGATAGCATGGTGTGAA+TGG | 0.487876 | 1_3:+62444067 | None:intergenic |
| TTTAGTGGCACTAATTTGCA+TGG | 0.489022 | 1_3:-62442718 | Msa0131570:CDS |
| AGAATCTTGCAGGCAGCACA+AGG | 0.497089 | 1_3:+62443913 | None:intergenic |
| TTCTCAATATTCTCCTCCCT+CGG | 0.503995 | 1_3:-62443979 | Msa0131570:CDS |
| GGAGGAGAATATTGAGAAGC+TGG | 0.504167 | 1_3:+62443984 | None:intergenic |
| GGATCAGTTGGAGGAAAATA+CGG | 0.507188 | 1_3:+62443856 | None:intergenic |
| GAATATTGAGAAGCTGGTGA+AGG | 0.509511 | 1_3:+62443990 | None:intergenic |
| TGAAGCAAATGCTAGGATAA+GGG | 0.510590 | 1_3:-62442859 | Msa0131570:CDS |
| AACTCATATCAACATGAGGT+TGG | 0.513338 | 1_3:+62442646 | None:intergenic |
| TAGATGAGGAGGAGAAGTAG+TGG | 0.517097 | 1_3:+62444109 | None:intergenic |
| GCTGGTGAAGGGAAAGGTGT+GGG | 0.521269 | 1_3:+62444002 | None:intergenic |
| CTCATATCAACATGAGGTTG+GGG | 0.524829 | 1_3:+62442648 | None:intergenic |
| AAAGGTGTGGGAGATTGTAA+AGG | 0.533363 | 1_3:+62444014 | None:intergenic |
| TGAGAAGCTGGTGAAGGGAA+AGG | 0.534082 | 1_3:+62443996 | None:intergenic |
| TGTGAATGGGAACATGAATT+GGG | 0.535599 | 1_3:+62444081 | None:intergenic |
| ATTGGGATTGGTAGATGAGG+AGG | 0.537299 | 1_3:+62444098 | None:intergenic |
| AGCTGGTGAAGGGAAAGGTG+TGG | 0.541852 | 1_3:+62444001 | None:intergenic |
| AATTAATTTCATGTCCAAAG+AGG | 0.542951 | 1_3:+62442585 | None:intergenic |
| ATGGGAACATGAATTGGGAT+TGG | 0.544335 | 1_3:+62444086 | None:intergenic |
| AATGGTGGTGGAGGAGATGG+TGG | 0.548964 | 1_3:+62443945 | None:intergenic |
| GGTGGTTGAGGAGCGGCCGA+GGG | 0.551956 | 1_3:+62443963 | None:intergenic |
| TTAATCATCATGTCATGGTC+TGG | 0.552049 | 1_3:+62442675 | None:intergenic |
| GGAGGTGAAGAAGATGAAGA+TGG | 0.556111 | 1_3:+62444035 | None:intergenic |
| GGTGTGGGAGATTGTAAAGG+AGG | 0.557869 | 1_3:+62444017 | None:intergenic |
| CTTAATTTCCAAACTCCAAG+TGG | 0.558448 | 1_3:-62442456 | Msa0131570:three_prime_UTR |
| CACCTGCACACCCATAAACT+GGG | 0.560148 | 1_3:+62442835 | None:intergenic |
| GCTAACAATAATGGTGGTGG+AGG | 0.560629 | 1_3:+62443936 | None:intergenic |
| AGGGCTAACAATAATGGTGG+TGG | 0.570677 | 1_3:+62443933 | None:intergenic |
| GGTTGAGGAGCGGCCGAGGG+AGG | 0.575874 | 1_3:+62443966 | None:intergenic |
| TGTAGTAGAGTTTGATAGCA+TGG | 0.578297 | 1_3:+62444058 | None:intergenic |
| TGGTTTATGAAGCAAATGCT+AGG | 0.582803 | 1_3:-62442866 | Msa0131570:CDS |
| TGAATTGGGATTGGTAGATG+AGG | 0.583122 | 1_3:+62444095 | None:intergenic |
| TTTGATAGCATGGTGTGAAT+GGG | 0.585620 | 1_3:+62444068 | None:intergenic |
| TCCAAAGACTCTATGAGCAA+TGG | 0.589978 | 1_3:+62443822 | None:intergenic |
| AACTTGAGTGGATCAGTTGG+AGG | 0.595286 | 1_3:+62443847 | None:intergenic |
| CTTACTGCATCTGCTCTCTG+AGG | 0.598505 | 1_3:+62442894 | None:intergenic |
| GTGAACTTGAGTGGATCAGT+TGG | 0.601167 | 1_3:+62443844 | None:intergenic |
| AATATTGAGAAGCTGGTGAA+GGG | 0.602247 | 1_3:+62443991 | None:intergenic |
| GCTGATTAATCATCATGTCA+TGG | 0.608852 | 1_3:+62442670 | None:intergenic |
| AGGAGATGGTGGTTGAGGAG+CGG | 0.615539 | 1_3:+62443956 | None:intergenic |
| AGCAGATGCAGTAAGCAGCA+TGG | 0.619103 | 1_3:-62442886 | Msa0131570:CDS |
| TGAGCAATGGTGAACTTGAG+TGG | 0.624171 | 1_3:+62443835 | None:intergenic |
| AATTTCCAAACTCCAAGTGG+AGG | 0.632065 | 1_3:-62442453 | Msa0131570:three_prime_UTR |
| AAGCAACTCATATCAACATG+AGG | 0.663119 | 1_3:+62442642 | None:intergenic |
| ACAAGGGCTAACAATAATGG+TGG | 0.670416 | 1_3:+62443930 | None:intergenic |
| GAATCTTGCAGGCAGCACAA+GGG | 0.696277 | 1_3:+62443914 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTTTTCAACATAT+TGG | - | chr1_3:62442851-62442870 | Msa0131570:CDS | 10.0% |
| !!! | AAATATTTTTTTCAACATAT+TGG | - | chr1_3:62442851-62442870 | Msa0131570:CDS | 10.0% |
| !! | AATAAAATGTACTATAAGTT+AGG | + | chr1_3:62443456-62443475 | None:intergenic | 15.0% |
| !! | AATAAATTTAGAGAAAATCT+TGG | - | chr1_3:62443485-62443504 | Msa0131570:intron | 15.0% |
| !!! | TAAAATTCCATTAATTTTTC+AGG | - | chr1_3:62443627-62443646 | Msa0131570:intron | 15.0% |
| !! | AATAAAATGTACTATAAGTT+AGG | + | chr1_3:62443456-62443475 | None:intergenic | 15.0% |
| !! | AATAAATTTAGAGAAAATCT+TGG | - | chr1_3:62443485-62443504 | Msa0131570:intron | 15.0% |
| !!! | TAAAATTCCATTAATTTTTC+AGG | - | chr1_3:62443627-62443646 | Msa0131570:intron | 15.0% |
| !!! | TATTTTAGTAATGTGCAAAT+TGG | + | chr1_3:62442836-62442855 | None:intergenic | 20.0% |
| !! | TGTATGATCTTAAAACAAAT+TGG | - | chr1_3:62442883-62442902 | Msa0131570:CDS | 20.0% |
| !! | TGTAAAAGATAAAAAGTTAG+TGG | + | chr1_3:62443184-62443203 | None:intergenic | 20.0% |
| !! | CATGAAAAAAATAAAAGCTA+TGG | - | chr1_3:62443202-62443221 | Msa0131570:intron | 20.0% |
| !! | ATCACAAGTCAAAAATAATT+AGG | - | chr1_3:62443316-62443335 | Msa0131570:intron | 20.0% |
| !!! | ATTAAGTTTTACAGTTACTA+TGG | + | chr1_3:62444085-62444104 | None:intergenic | 20.0% |
| !!! | TATTTTAGTAATGTGCAAAT+TGG | + | chr1_3:62442836-62442855 | None:intergenic | 20.0% |
| !! | TGTATGATCTTAAAACAAAT+TGG | - | chr1_3:62442883-62442902 | Msa0131570:CDS | 20.0% |
| !! | TGTAAAAGATAAAAAGTTAG+TGG | + | chr1_3:62443184-62443203 | None:intergenic | 20.0% |
| !! | CATGAAAAAAATAAAAGCTA+TGG | - | chr1_3:62443202-62443221 | Msa0131570:intron | 20.0% |
| !! | ATCACAAGTCAAAAATAATT+AGG | - | chr1_3:62443316-62443335 | Msa0131570:intron | 20.0% |
| !!! | ATTAAGTTTTACAGTTACTA+TGG | + | chr1_3:62444085-62444104 | None:intergenic | 20.0% |
| !!! | ACATGATGATTTTTTCTTGT+TGG | + | chr1_3:62442807-62442826 | None:intergenic | 25.0% |
| !! | AATTGTCTCATAACAGTTTT+AGG | - | chr1_3:62443003-62443022 | Msa0131570:intron | 25.0% |
| !! | ATTGTCTCATAACAGTTTTA+GGG | - | chr1_3:62443004-62443023 | Msa0131570:intron | 25.0% |
| ! | AAAGATAAAAAGTTAGTGGT+TGG | + | chr1_3:62443180-62443199 | None:intergenic | 25.0% |
| ! | ATGAAAAGATTCCAAAATGT+GGG | + | chr1_3:62443344-62443363 | None:intergenic | 25.0% |
| ! | AATGAAAAGATTCCAAAATG+TGG | + | chr1_3:62443345-62443364 | None:intergenic | 25.0% |
| ! | TTCATTATGTCTAACGATTA+TGG | - | chr1_3:62443359-62443378 | Msa0131570:intron | 25.0% |
| ! | AAACTTATGTGCATTTGTTT+AGG | + | chr1_3:62443545-62443564 | None:intergenic | 25.0% |
| !! | TTTTGTCCATTTTCAAATCA+TGG | - | chr1_3:62443562-62443581 | Msa0131570:intron | 25.0% |
| ! | ATTAAGCCATGATTTGAAAA+TGG | + | chr1_3:62443571-62443590 | None:intergenic | 25.0% |
| !!! | TTTTTAGAGGACAACAATTT+TGG | - | chr1_3:62443934-62443953 | Msa0131570:CDS | 25.0% |
| !!! | TTTTAGAGGACAACAATTTT+GGG | - | chr1_3:62443935-62443954 | Msa0131570:CDS | 25.0% |
| ! | AATTAATTTCATGTCCAAAG+AGG | + | chr1_3:62443973-62443992 | None:intergenic | 25.0% |
| !!! | ACATGATGATTTTTTCTTGT+TGG | + | chr1_3:62442807-62442826 | None:intergenic | 25.0% |
| !! | AATTGTCTCATAACAGTTTT+AGG | - | chr1_3:62443003-62443022 | Msa0131570:intron | 25.0% |
| !! | ATTGTCTCATAACAGTTTTA+GGG | - | chr1_3:62443004-62443023 | Msa0131570:intron | 25.0% |
| ! | AAAGATAAAAAGTTAGTGGT+TGG | + | chr1_3:62443180-62443199 | None:intergenic | 25.0% |
| ! | ATGAAAAGATTCCAAAATGT+GGG | + | chr1_3:62443344-62443363 | None:intergenic | 25.0% |
| ! | AATGAAAAGATTCCAAAATG+TGG | + | chr1_3:62443345-62443364 | None:intergenic | 25.0% |
| ! | TTCATTATGTCTAACGATTA+TGG | - | chr1_3:62443359-62443378 | Msa0131570:intron | 25.0% |
| ! | AAACTTATGTGCATTTGTTT+AGG | + | chr1_3:62443545-62443564 | None:intergenic | 25.0% |
| !! | TTTTGTCCATTTTCAAATCA+TGG | - | chr1_3:62443562-62443581 | Msa0131570:intron | 25.0% |
| ! | ATTAAGCCATGATTTGAAAA+TGG | + | chr1_3:62443571-62443590 | None:intergenic | 25.0% |
| !!! | TTTTTAGAGGACAACAATTT+TGG | - | chr1_3:62443934-62443953 | Msa0131570:CDS | 25.0% |
| !!! | TTTTAGAGGACAACAATTTT+GGG | - | chr1_3:62443935-62443954 | Msa0131570:CDS | 25.0% |
| ! | AATTAATTTCATGTCCAAAG+AGG | + | chr1_3:62443973-62443992 | None:intergenic | 25.0% |
| !! | TTGTCTCATAACAGTTTTAG+GGG | - | chr1_3:62443005-62443024 | Msa0131570:intron | 30.0% |
| !! | TTTTAGGGGAACAAAATCAT+GGG | - | chr1_3:62443019-62443038 | Msa0131570:intron | 30.0% |
| TGGATGGAAAAGATAACAAA+AGG | - | chr1_3:62443056-62443075 | Msa0131570:intron | 30.0% | |
| AAGATATAGTGGTTACACTA+TGG | + | chr1_3:62443296-62443315 | None:intergenic | 30.0% | |
| ! | TGACTTGTGATAAGATATAG+TGG | + | chr1_3:62443307-62443326 | None:intergenic | 30.0% |
| !! | AGTTTTTCACTTTGGAAACT+TGG | + | chr1_3:62443403-62443422 | None:intergenic | 30.0% |
| GGTAGTTCCTGAAAAATTAA+TGG | + | chr1_3:62443637-62443656 | None:intergenic | 30.0% | |
| !!! | TGATATGAGTTGCTTTTTAG+AGG | - | chr1_3:62443921-62443940 | Msa0131570:CDS | 30.0% |
| !! | TTGTCTCATAACAGTTTTAG+GGG | - | chr1_3:62443005-62443024 | Msa0131570:intron | 30.0% |
| !! | TTTTAGGGGAACAAAATCAT+GGG | - | chr1_3:62443019-62443038 | Msa0131570:intron | 30.0% |
| TGGATGGAAAAGATAACAAA+AGG | - | chr1_3:62443056-62443075 | Msa0131570:intron | 30.0% | |
| AAGATATAGTGGTTACACTA+TGG | + | chr1_3:62443296-62443315 | None:intergenic | 30.0% | |
| ! | TGACTTGTGATAAGATATAG+TGG | + | chr1_3:62443307-62443326 | None:intergenic | 30.0% |
| !! | AGTTTTTCACTTTGGAAACT+TGG | + | chr1_3:62443403-62443422 | None:intergenic | 30.0% |
| GGTAGTTCCTGAAAAATTAA+TGG | + | chr1_3:62443637-62443656 | None:intergenic | 30.0% | |
| !!! | TGATATGAGTTGCTTTTTAG+AGG | - | chr1_3:62443921-62443940 | Msa0131570:CDS | 30.0% |
| TGTGAATGGGAACATGAATT+GGG | + | chr1_3:62442477-62442496 | None:intergenic | 35.0% | |
| ! | TTTGATAGCATGGTGTGAAT+GGG | + | chr1_3:62442490-62442509 | None:intergenic | 35.0% |
| ! | TGTAGTAGAGTTTGATAGCA+TGG | + | chr1_3:62442500-62442519 | None:intergenic | 35.0% |
| AATATTGAGAAGCTGGTGAA+GGG | + | chr1_3:62442567-62442586 | None:intergenic | 35.0% | |
| CAACATCATTAAGTTCTTGC+AGG | - | chr1_3:62442761-62442780 | Msa0131570:CDS | 35.0% | |
| !!! | GTTTTAGGGGAACAAAATCA+TGG | - | chr1_3:62443018-62443037 | Msa0131570:intron | 35.0% |
| ! | AAAGGAGCATACCTAATTGA+TGG | - | chr1_3:62443074-62443093 | Msa0131570:intron | 35.0% |
| ! | AAGGAGCATACCTAATTGAT+GGG | - | chr1_3:62443075-62443094 | Msa0131570:intron | 35.0% |
| !! | ATGCATAGCTTTGATGTGTT+AGG | + | chr1_3:62443128-62443147 | None:intergenic | 35.0% |
| ! | ATAATTAGGTGCCCACATTT+TGG | - | chr1_3:62443330-62443349 | Msa0131570:intron | 35.0% |
| TGTCTAACGATTATGGTCAA+TGG | - | chr1_3:62443366-62443385 | Msa0131570:intron | 35.0% | |
| GTCTAACGATTATGGTCAAT+GGG | - | chr1_3:62443367-62443386 | Msa0131570:intron | 35.0% | |
| TCTAACGATTATGGTCAATG+GGG | - | chr1_3:62443368-62443387 | Msa0131570:intron | 35.0% | |
| ! | TGCACTCAAGTTTTTCACTT+TGG | + | chr1_3:62443411-62443430 | None:intergenic | 35.0% |
| TGGTTTATGAAGCAAATGCT+AGG | - | chr1_3:62443689-62443708 | Msa0131570:intron | 35.0% | |
| ATGAAGCAAATGCTAGGATA+AGG | - | chr1_3:62443695-62443714 | Msa0131570:intron | 35.0% | |
| TGAAGCAAATGCTAGGATAA+GGG | - | chr1_3:62443696-62443715 | Msa0131570:intron | 35.0% | |
| TTGCCAACAAGCAAATTTAG+TGG | - | chr1_3:62443822-62443841 | Msa0131570:CDS | 35.0% | |
| ! | TTTAGTGGCACTAATTTGCA+TGG | - | chr1_3:62443837-62443856 | Msa0131570:CDS | 35.0% |
| TTAATCATCATGTCATGGTC+TGG | + | chr1_3:62443883-62443902 | None:intergenic | 35.0% | |
| GCTGATTAATCATCATGTCA+TGG | + | chr1_3:62443888-62443907 | None:intergenic | 35.0% | |
| ACTCATATCAACATGAGGTT+GGG | + | chr1_3:62443911-62443930 | None:intergenic | 35.0% | |
| AACTCATATCAACATGAGGT+TGG | + | chr1_3:62443912-62443931 | None:intergenic | 35.0% | |
| AAGCAACTCATATCAACATG+AGG | + | chr1_3:62443916-62443935 | None:intergenic | 35.0% | |
| CTTAATTTCCAAACTCCAAG+TGG | - | chr1_3:62444099-62444118 | Msa0131570:CDS | 35.0% | |
| TGTGAATGGGAACATGAATT+GGG | + | chr1_3:62442477-62442496 | None:intergenic | 35.0% | |
| ! | TTTGATAGCATGGTGTGAAT+GGG | + | chr1_3:62442490-62442509 | None:intergenic | 35.0% |
| ! | TGTAGTAGAGTTTGATAGCA+TGG | + | chr1_3:62442500-62442519 | None:intergenic | 35.0% |
| AATATTGAGAAGCTGGTGAA+GGG | + | chr1_3:62442567-62442586 | None:intergenic | 35.0% | |
| CAACATCATTAAGTTCTTGC+AGG | - | chr1_3:62442761-62442780 | Msa0131570:CDS | 35.0% | |
| !!! | GTTTTAGGGGAACAAAATCA+TGG | - | chr1_3:62443018-62443037 | Msa0131570:intron | 35.0% |
| ! | AAAGGAGCATACCTAATTGA+TGG | - | chr1_3:62443074-62443093 | Msa0131570:intron | 35.0% |
| ! | AAGGAGCATACCTAATTGAT+GGG | - | chr1_3:62443075-62443094 | Msa0131570:intron | 35.0% |
| !! | ATGCATAGCTTTGATGTGTT+AGG | + | chr1_3:62443128-62443147 | None:intergenic | 35.0% |
| ! | ATAATTAGGTGCCCACATTT+TGG | - | chr1_3:62443330-62443349 | Msa0131570:intron | 35.0% |
| TGTCTAACGATTATGGTCAA+TGG | - | chr1_3:62443366-62443385 | Msa0131570:intron | 35.0% | |
| GTCTAACGATTATGGTCAAT+GGG | - | chr1_3:62443367-62443386 | Msa0131570:intron | 35.0% | |
| TCTAACGATTATGGTCAATG+GGG | - | chr1_3:62443368-62443387 | Msa0131570:intron | 35.0% | |
| ! | TGCACTCAAGTTTTTCACTT+TGG | + | chr1_3:62443411-62443430 | None:intergenic | 35.0% |
| TGGTTTATGAAGCAAATGCT+AGG | - | chr1_3:62443689-62443708 | Msa0131570:intron | 35.0% | |
| ATGAAGCAAATGCTAGGATA+AGG | - | chr1_3:62443695-62443714 | Msa0131570:intron | 35.0% | |
| TGAAGCAAATGCTAGGATAA+GGG | - | chr1_3:62443696-62443715 | Msa0131570:intron | 35.0% | |
| TTGCCAACAAGCAAATTTAG+TGG | - | chr1_3:62443822-62443841 | Msa0131570:CDS | 35.0% | |
| ! | TTTAGTGGCACTAATTTGCA+TGG | - | chr1_3:62443837-62443856 | Msa0131570:CDS | 35.0% |
| TTAATCATCATGTCATGGTC+TGG | + | chr1_3:62443883-62443902 | None:intergenic | 35.0% | |
| GCTGATTAATCATCATGTCA+TGG | + | chr1_3:62443888-62443907 | None:intergenic | 35.0% | |
| ACTCATATCAACATGAGGTT+GGG | + | chr1_3:62443911-62443930 | None:intergenic | 35.0% | |
| AACTCATATCAACATGAGGT+TGG | + | chr1_3:62443912-62443931 | None:intergenic | 35.0% | |
| AAGCAACTCATATCAACATG+AGG | + | chr1_3:62443916-62443935 | None:intergenic | 35.0% | |
| CTTAATTTCCAAACTCCAAG+TGG | - | chr1_3:62444099-62444118 | Msa0131570:CDS | 35.0% | |
| ! | TGAATTGGGATTGGTAGATG+AGG | + | chr1_3:62442463-62442482 | None:intergenic | 40.0% |
| ATGGGAACATGAATTGGGAT+TGG | + | chr1_3:62442472-62442491 | None:intergenic | 40.0% | |
| GTGTGAATGGGAACATGAAT+TGG | + | chr1_3:62442478-62442497 | None:intergenic | 40.0% | |
| ! | GTTTGATAGCATGGTGTGAA+TGG | + | chr1_3:62442491-62442510 | None:intergenic | 40.0% |
| ! | AAAGGTGTGGGAGATTGTAA+AGG | + | chr1_3:62442544-62442563 | None:intergenic | 40.0% |
| GAATATTGAGAAGCTGGTGA+AGG | + | chr1_3:62442568-62442587 | None:intergenic | 40.0% | |
| TTCTCAATATTCTCCTCCCT+CGG | - | chr1_3:62442576-62442595 | Msa0131570:exon | 40.0% | |
| ACAAGGGCTAACAATAATGG+TGG | + | chr1_3:62442628-62442647 | None:intergenic | 40.0% | |
| AGCACAAGGGCTAACAATAA+TGG | + | chr1_3:62442631-62442650 | None:intergenic | 40.0% | |
| GGATCAGTTGGAGGAAAATA+CGG | + | chr1_3:62442702-62442721 | None:intergenic | 40.0% | |
| ACCATTGCTCATAGAGTCTT+TGG | - | chr1_3:62442732-62442751 | Msa0131570:CDS | 40.0% | |
| TCCAAAGACTCTATGAGCAA+TGG | + | chr1_3:62442736-62442755 | None:intergenic | 40.0% | |
| ACTGGTCATAGTCACAAACA+AGG | + | chr1_3:62442928-62442947 | None:intergenic | 40.0% | |
| ! | GGGAACAAAATCATGGGTTT+TGG | - | chr1_3:62443025-62443044 | Msa0131570:intron | 40.0% |
| !! | CATGGGTTTTGGTCAAAAAG+TGG | - | chr1_3:62443036-62443055 | Msa0131570:intron | 40.0% |
| !! | GGTTTTGGTCAAAAAGTGGA+TGG | - | chr1_3:62443040-62443059 | Msa0131570:intron | 40.0% |
| ATCATGCATGCCCATCAATT+AGG | + | chr1_3:62443088-62443107 | None:intergenic | 40.0% | |
| ! | GTGCCACTAAATTTGCTTGT+TGG | + | chr1_3:62443828-62443847 | None:intergenic | 40.0% |
| CTCATATCAACATGAGGTTG+GGG | + | chr1_3:62443910-62443929 | None:intergenic | 40.0% | |
| !! | ACAACAATTTTGGGTCTGCT+TGG | - | chr1_3:62443944-62443963 | Msa0131570:CDS | 40.0% |
| !! | CAACAATTTTGGGTCTGCTT+GGG | - | chr1_3:62443945-62443964 | Msa0131570:CDS | 40.0% |
| AATTTCCAAACTCCAAGTGG+AGG | - | chr1_3:62444102-62444121 | Msa0131570:CDS | 40.0% | |
| ! | TGAATTGGGATTGGTAGATG+AGG | + | chr1_3:62442463-62442482 | None:intergenic | 40.0% |
| ATGGGAACATGAATTGGGAT+TGG | + | chr1_3:62442472-62442491 | None:intergenic | 40.0% | |
| GTGTGAATGGGAACATGAAT+TGG | + | chr1_3:62442478-62442497 | None:intergenic | 40.0% | |
| ! | GTTTGATAGCATGGTGTGAA+TGG | + | chr1_3:62442491-62442510 | None:intergenic | 40.0% |
| ! | AAAGGTGTGGGAGATTGTAA+AGG | + | chr1_3:62442544-62442563 | None:intergenic | 40.0% |
| GAATATTGAGAAGCTGGTGA+AGG | + | chr1_3:62442568-62442587 | None:intergenic | 40.0% | |
| TTCTCAATATTCTCCTCCCT+CGG | - | chr1_3:62442576-62442595 | Msa0131570:exon | 40.0% | |
| ACAAGGGCTAACAATAATGG+TGG | + | chr1_3:62442628-62442647 | None:intergenic | 40.0% | |
| AGCACAAGGGCTAACAATAA+TGG | + | chr1_3:62442631-62442650 | None:intergenic | 40.0% | |
| GGATCAGTTGGAGGAAAATA+CGG | + | chr1_3:62442702-62442721 | None:intergenic | 40.0% | |
| ACCATTGCTCATAGAGTCTT+TGG | - | chr1_3:62442732-62442751 | Msa0131570:CDS | 40.0% | |
| TCCAAAGACTCTATGAGCAA+TGG | + | chr1_3:62442736-62442755 | None:intergenic | 40.0% | |
| ACTGGTCATAGTCACAAACA+AGG | + | chr1_3:62442928-62442947 | None:intergenic | 40.0% | |
| ! | GGGAACAAAATCATGGGTTT+TGG | - | chr1_3:62443025-62443044 | Msa0131570:intron | 40.0% |
| !! | CATGGGTTTTGGTCAAAAAG+TGG | - | chr1_3:62443036-62443055 | Msa0131570:intron | 40.0% |
| !! | GGTTTTGGTCAAAAAGTGGA+TGG | - | chr1_3:62443040-62443059 | Msa0131570:intron | 40.0% |
| ATCATGCATGCCCATCAATT+AGG | + | chr1_3:62443088-62443107 | None:intergenic | 40.0% | |
| ! | GTGCCACTAAATTTGCTTGT+TGG | + | chr1_3:62443828-62443847 | None:intergenic | 40.0% |
| CTCATATCAACATGAGGTTG+GGG | + | chr1_3:62443910-62443929 | None:intergenic | 40.0% | |
| !! | ACAACAATTTTGGGTCTGCT+TGG | - | chr1_3:62443944-62443963 | Msa0131570:CDS | 40.0% |
| !! | CAACAATTTTGGGTCTGCTT+GGG | - | chr1_3:62443945-62443964 | Msa0131570:CDS | 40.0% |
| AATTTCCAAACTCCAAGTGG+AGG | - | chr1_3:62444102-62444121 | Msa0131570:CDS | 40.0% | |
| TAGATGAGGAGGAGAAGTAG+TGG | + | chr1_3:62442449-62442468 | None:intergenic | 45.0% | |
| ! | ATTGGGATTGGTAGATGAGG+AGG | + | chr1_3:62442460-62442479 | None:intergenic | 45.0% |
| GGAGGTGAAGAAGATGAAGA+TGG | + | chr1_3:62442523-62442542 | None:intergenic | 45.0% | |
| GGAGGAGAATATTGAGAAGC+TGG | + | chr1_3:62442574-62442593 | None:intergenic | 45.0% | |
| !! | AATAATGGTGGTGGAGGAGA+TGG | + | chr1_3:62442616-62442635 | None:intergenic | 45.0% |
| !! | GCTAACAATAATGGTGGTGG+AGG | + | chr1_3:62442622-62442641 | None:intergenic | 45.0% |
| AGGGCTAACAATAATGGTGG+TGG | + | chr1_3:62442625-62442644 | None:intergenic | 45.0% | |
| ! | ACTTTTCAACACACCTGCGA+CGG | + | chr1_3:62442668-62442687 | None:intergenic | 45.0% |
| AACTTGAGTGGATCAGTTGG+AGG | + | chr1_3:62442711-62442730 | None:intergenic | 45.0% | |
| GTGAACTTGAGTGGATCAGT+TGG | + | chr1_3:62442714-62442733 | None:intergenic | 45.0% | |
| TGAGCAATGGTGAACTTGAG+TGG | + | chr1_3:62442723-62442742 | None:intergenic | 45.0% | |
| AAGAGAATGTCATGCCTCGA+AGG | + | chr1_3:62442960-62442979 | None:intergenic | 45.0% | |
| TAGTGGTTACACTATGGCCA+GGG | + | chr1_3:62443290-62443309 | None:intergenic | 45.0% | |
| ATAGTGGTTACACTATGGCC+AGG | + | chr1_3:62443291-62443310 | None:intergenic | 45.0% | |
| AGGATAAGGGACCCAGTTTA+TGG | - | chr1_3:62443709-62443728 | Msa0131570:intron | 45.0% | |
| GGATAAGGGACCCAGTTTAT+GGG | - | chr1_3:62443710-62443729 | Msa0131570:intron | 45.0% | |
| TAGATGAGGAGGAGAAGTAG+TGG | + | chr1_3:62442449-62442468 | None:intergenic | 45.0% | |
| ! | ATTGGGATTGGTAGATGAGG+AGG | + | chr1_3:62442460-62442479 | None:intergenic | 45.0% |
| GGAGGTGAAGAAGATGAAGA+TGG | + | chr1_3:62442523-62442542 | None:intergenic | 45.0% | |
| GGAGGAGAATATTGAGAAGC+TGG | + | chr1_3:62442574-62442593 | None:intergenic | 45.0% | |
| !! | AATAATGGTGGTGGAGGAGA+TGG | + | chr1_3:62442616-62442635 | None:intergenic | 45.0% |
| !! | GCTAACAATAATGGTGGTGG+AGG | + | chr1_3:62442622-62442641 | None:intergenic | 45.0% |
| AGGGCTAACAATAATGGTGG+TGG | + | chr1_3:62442625-62442644 | None:intergenic | 45.0% | |
| ! | ACTTTTCAACACACCTGCGA+CGG | + | chr1_3:62442668-62442687 | None:intergenic | 45.0% |
| AACTTGAGTGGATCAGTTGG+AGG | + | chr1_3:62442711-62442730 | None:intergenic | 45.0% | |
| GTGAACTTGAGTGGATCAGT+TGG | + | chr1_3:62442714-62442733 | None:intergenic | 45.0% | |
| TGAGCAATGGTGAACTTGAG+TGG | + | chr1_3:62442723-62442742 | None:intergenic | 45.0% | |
| AAGAGAATGTCATGCCTCGA+AGG | + | chr1_3:62442960-62442979 | None:intergenic | 45.0% | |
| TAGTGGTTACACTATGGCCA+GGG | + | chr1_3:62443290-62443309 | None:intergenic | 45.0% | |
| ATAGTGGTTACACTATGGCC+AGG | + | chr1_3:62443291-62443310 | None:intergenic | 45.0% | |
| AGGATAAGGGACCCAGTTTA+TGG | - | chr1_3:62443709-62443728 | Msa0131570:intron | 45.0% | |
| GGATAAGGGACCCAGTTTAT+GGG | - | chr1_3:62443710-62443729 | Msa0131570:intron | 45.0% | |
| GGTGTGGGAGATTGTAAAGG+AGG | + | chr1_3:62442541-62442560 | None:intergenic | 50.0% | |
| TGAGAAGCTGGTGAAGGGAA+AGG | + | chr1_3:62442562-62442581 | None:intergenic | 50.0% | |
| GAATCTTGCAGGCAGCACAA+GGG | + | chr1_3:62442644-62442663 | None:intergenic | 50.0% | |
| AGAATCTTGCAGGCAGCACA+AGG | + | chr1_3:62442645-62442664 | None:intergenic | 50.0% | |
| ! | CCTCGAAGGTGTGAATGAAC+TGG | + | chr1_3:62442946-62442965 | None:intergenic | 50.0% |
| CCAGTTCATTCACACCTTCG+AGG | - | chr1_3:62442943-62442962 | Msa0131570:intron | 50.0% | |
| CTTTCTCTCTTTAGTCCCCC+TGG | - | chr1_3:62443270-62443289 | Msa0131570:intron | 50.0% | |
| AGTGGTTACACTATGGCCAG+GGG | + | chr1_3:62443289-62443308 | None:intergenic | 50.0% | |
| CTTACTGCATCTGCTCTCTG+AGG | + | chr1_3:62443664-62443683 | None:intergenic | 50.0% | |
| AGCAGATGCAGTAAGCAGCA+TGG | - | chr1_3:62443669-62443688 | Msa0131570:intron | 50.0% | |
| CACCTGCACACCCATAAACT+GGG | + | chr1_3:62443723-62443742 | None:intergenic | 50.0% | |
| CACTAGCTCAGCTTGTGCTT+TGG | + | chr1_3:62443794-62443813 | None:intergenic | 50.0% | |
| GTCTTCCTCCACTTGGAGTT+TGG | + | chr1_3:62444110-62444129 | None:intergenic | 50.0% | |
| ! | AGCTCTAGTCTTCCTCCACT+TGG | + | chr1_3:62444117-62444136 | None:intergenic | 50.0% |
| GGTGTGGGAGATTGTAAAGG+AGG | + | chr1_3:62442541-62442560 | None:intergenic | 50.0% | |
| TGAGAAGCTGGTGAAGGGAA+AGG | + | chr1_3:62442562-62442581 | None:intergenic | 50.0% | |
| GAATCTTGCAGGCAGCACAA+GGG | + | chr1_3:62442644-62442663 | None:intergenic | 50.0% | |
| AGAATCTTGCAGGCAGCACA+AGG | + | chr1_3:62442645-62442664 | None:intergenic | 50.0% | |
| ! | CCTCGAAGGTGTGAATGAAC+TGG | + | chr1_3:62442946-62442965 | None:intergenic | 50.0% |
| CCAGTTCATTCACACCTTCG+AGG | - | chr1_3:62442943-62442962 | Msa0131570:intron | 50.0% | |
| CTTTCTCTCTTTAGTCCCCC+TGG | - | chr1_3:62443270-62443289 | Msa0131570:intron | 50.0% | |
| AGTGGTTACACTATGGCCAG+GGG | + | chr1_3:62443289-62443308 | None:intergenic | 50.0% | |
| CTTACTGCATCTGCTCTCTG+AGG | + | chr1_3:62443664-62443683 | None:intergenic | 50.0% | |
| AGCAGATGCAGTAAGCAGCA+TGG | - | chr1_3:62443669-62443688 | Msa0131570:intron | 50.0% | |
| CACCTGCACACCCATAAACT+GGG | + | chr1_3:62443723-62443742 | None:intergenic | 50.0% | |
| CACTAGCTCAGCTTGTGCTT+TGG | + | chr1_3:62443794-62443813 | None:intergenic | 50.0% | |
| GTCTTCCTCCACTTGGAGTT+TGG | + | chr1_3:62444110-62444129 | None:intergenic | 50.0% | |
| ! | AGCTCTAGTCTTCCTCCACT+TGG | + | chr1_3:62444117-62444136 | None:intergenic | 50.0% |
| ! | GCTGGTGAAGGGAAAGGTGT+GGG | + | chr1_3:62442556-62442575 | None:intergenic | 55.0% |
| AGCTGGTGAAGGGAAAGGTG+TGG | + | chr1_3:62442557-62442576 | None:intergenic | 55.0% | |
| ! | AGGAGATGGTGGTTGAGGAG+CGG | + | chr1_3:62442602-62442621 | None:intergenic | 55.0% |
| !! | AATGGTGGTGGAGGAGATGG+TGG | + | chr1_3:62442613-62442632 | None:intergenic | 55.0% |
| GTGGTTACACTATGGCCAGG+GGG | + | chr1_3:62443288-62443307 | None:intergenic | 55.0% | |
| !! | GCATCTGCTCTCTGAGGTTC+AGG | + | chr1_3:62443658-62443677 | None:intergenic | 55.0% |
| GACCCAGTTTATGGGTGTGC+AGG | - | chr1_3:62443718-62443737 | Msa0131570:intron | 55.0% | |
| GCACCTGCACACCCATAAAC+TGG | + | chr1_3:62443724-62443743 | None:intergenic | 55.0% | |
| ! | GCTGGTGAAGGGAAAGGTGT+GGG | + | chr1_3:62442556-62442575 | None:intergenic | 55.0% |
| AGCTGGTGAAGGGAAAGGTG+TGG | + | chr1_3:62442557-62442576 | None:intergenic | 55.0% | |
| ! | AGGAGATGGTGGTTGAGGAG+CGG | + | chr1_3:62442602-62442621 | None:intergenic | 55.0% |
| !! | AATGGTGGTGGAGGAGATGG+TGG | + | chr1_3:62442613-62442632 | None:intergenic | 55.0% |
| GTGGTTACACTATGGCCAGG+GGG | + | chr1_3:62443288-62443307 | None:intergenic | 55.0% | |
| !! | GCATCTGCTCTCTGAGGTTC+AGG | + | chr1_3:62443658-62443677 | None:intergenic | 55.0% |
| GACCCAGTTTATGGGTGTGC+AGG | - | chr1_3:62443718-62443737 | Msa0131570:intron | 55.0% | |
| GCACCTGCACACCCATAAAC+TGG | + | chr1_3:62443724-62443743 | None:intergenic | 55.0% | |
| ! | GGTGGAGGAGATGGTGGTTG+AGG | + | chr1_3:62442607-62442626 | None:intergenic | 60.0% |
| CCTGCGACGGAGAATCTTGC+AGG | + | chr1_3:62442655-62442674 | None:intergenic | 60.0% | |
| CCTGCAAGATTCTCCGTCGC+AGG | - | chr1_3:62442652-62442671 | Msa0131570:CDS | 60.0% | |
| GGTCTGCTTGGGAGCCTCTT+TGG | - | chr1_3:62443956-62443975 | Msa0131570:CDS | 60.0% | |
| ! | GGTGGAGGAGATGGTGGTTG+AGG | + | chr1_3:62442607-62442626 | None:intergenic | 60.0% |
| CCTGCGACGGAGAATCTTGC+AGG | + | chr1_3:62442655-62442674 | None:intergenic | 60.0% | |
| CCTGCAAGATTCTCCGTCGC+AGG | - | chr1_3:62442652-62442671 | Msa0131570:CDS | 60.0% | |
| GGTCTGCTTGGGAGCCTCTT+TGG | - | chr1_3:62443956-62443975 | Msa0131570:CDS | 60.0% | |
| GGTGGTTGAGGAGCGGCCGA+GGG | + | chr1_3:62442595-62442614 | None:intergenic | 70.0% | |
| TGGTGGTTGAGGAGCGGCCG+AGG | + | chr1_3:62442596-62442615 | None:intergenic | 70.0% | |
| GGTGGTTGAGGAGCGGCCGA+GGG | + | chr1_3:62442595-62442614 | None:intergenic | 70.0% | |
| TGGTGGTTGAGGAGCGGCCG+AGG | + | chr1_3:62442596-62442615 | None:intergenic | 70.0% | |
| GGTTGAGGAGCGGCCGAGGG+AGG | + | chr1_3:62442592-62442611 | None:intergenic | 75.0% | |
| GGTTGAGGAGCGGCCGAGGG+AGG | + | chr1_3:62442592-62442611 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 62442427 | 62444150 | 62442427 | ID=Msa0131570;Name=Msa0131570 |
| chr1_3 | mRNA | 62442427 | 62444150 | 62442427 | ID=Msa0131570-mRNA-1;Parent=Msa0131570;Name=Msa0131570-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.5|0.33|1|1|1|3|166|222 |
| chr1_3 | exon | 62442427 | 62442928 | 62442427 | ID=Msa0131570-mRNA-1:exon:20805;Parent=Msa0131570-mRNA-1 |
| chr1_3 | exon | 62443795 | 62443880 | 62443795 | ID=Msa0131570-mRNA-1:exon:20804;Parent=Msa0131570-mRNA-1 |
| chr1_3 | exon | 62443904 | 62444150 | 62443904 | ID=Msa0131570-mRNA-1:exon:20803;Parent=Msa0131570-mRNA-1 |
| chr1_3 | CDS | 62443904 | 62444150 | 62443904 | ID=Msa0131570-mRNA-1:cds;Parent=Msa0131570-mRNA-1 |
| chr1_3 | CDS | 62443795 | 62443880 | 62443795 | ID=Msa0131570-mRNA-1:cds;Parent=Msa0131570-mRNA-1 |
| chr1_3 | CDS | 62442593 | 62442928 | 62442593 | ID=Msa0131570-mRNA-1:cds;Parent=Msa0131570-mRNA-1 |
| chr1_3 | three_prime_UTR | 62442427 | 62442592 | 62442427 | ID=Msa0131570-mRNA-1:three_prime_utr;Parent=Msa0131570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
