AlfalfaGEDB | Msa0131730

M. sativa cultivar zhongmu-4 / Msa0131730

KEGG: -
GO: -
PFAM: PF14383.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0131730	XP_003591202.3	86.207	812	88	7	1	806	1	794	0.0	1357

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0131730	A0A396JRD2	87.076	766	84	5	47	806	1	757	0.0	1302

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032500	Msa0131730	0.889590	2.113284e-73	-8.615850e-47
Msa0131730	Msa0173090	0.889203	2.987418e-73	-8.615850e-47
Msa0131730	Msa0666030	0.806870	6.666468e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0131730	MtrunA17_Chr1g0192581	87.076	766	84	5	47	806	1	757	0.0	1302
Msa0131730	MtrunA17_Chr7g0271711	47.408	926	349	27	3	806	1	910	0.0	663
Msa0131730	MtrunA17_Chr2g0294831	28.844	943	508	33	1	803	1	920	2.49e-72	254
Msa0131730	MtrunA17_Chr7g0250831	41.509	106	53	3	701	803	835	934	1.24e-14	78.2
Msa0131730	MtrunA17_Chr6g0457761	31.111	180	101	10	637	803	708	877	8.55e-14	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0131730	AT3G58650.1	29.506	871	481	31	2	803	3	809	1.20e-69	246
Msa0131730	AT5G26910.4	28.490	874	502	30	2	803	3	825	4.99e-62	225
Msa0131730	AT5G26910.1	28.490	874	502	30	2	803	3	825	4.99e-62	225
Msa0131730	AT5G26910.3	28.408	873	503	29	2	803	3	824	5.39e-62	224
Msa0131730	AT5G26910.2	29.459	499	285	17	2	441	3	493	1.10e-29	125
Msa0131730	AT3G05750.4	27.948	458	246	14	50	441	52	491	9.17e-23	104
Msa0131730	AT3G05750.4	36.478	159	89	3	650	803	638	789	5.68e-16	82.8
Msa0131730	AT3G05750.1	27.729	458	247	13	50	441	60	499	1.10e-22	104
Msa0131730	AT3G05750.1	36.478	159	89	3	650	803	646	797	5.97e-16	82.8
Msa0131730	AT3G05750.3	27.733	375	210	12	111	441	39	396	4.21e-19	92.8

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Find 153 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATCAACATCAATTC+TGG	0.330223	1_3:-62680690	None:intergenic
AAAATCCTAGTGATATTGCA+AGG	0.615461	1_3:+62679526	Msa0131730:CDS
AAAATGAAACTTTGTCTCCA+AGG	0.473878	1_3:+62679784	Msa0131730:CDS
AAAGCTCTACAAAATCATCA+AGG	0.594973	1_3:+62681820	Msa0131730:CDS
AAATAATTACCAGGTAAGTT+AGG	0.347260	1_3:-62679063	None:intergenic
AAATTGGAAACAGCGCAACA+CGG	0.695462	1_3:+62680005	Msa0131730:CDS
AACCAATTCATCTATCAAAT+AGG	0.394619	1_3:-62682279	None:intergenic
AACCAATTCATCTTATATTC+AGG	0.323610	1_3:-62681792	None:intergenic
AACCTGCTTAGTGATAAATT+GGG	0.585492	1_3:+62680935	Msa0131730:CDS
AAGAATACTCTAAGCTCAAA+AGG	0.473263	1_3:+62681973	Msa0131730:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGGAGAAAAGAAGTTACA+AGG	+	chr1_3:62678978-62678997	Msa0131730:CDS	30.0%
ATGGAGAAAAGAAGTTACAA+GGG	+	chr1_3:62678979-62678998	Msa0131730:CDS	30.0%
AAAATCCTAGTGATATTGCA+AGG	+	chr1_3:62679526-62679545	Msa0131730:CDS	30.0%
TAAGTGACAACATAATGAAG+TGG	-	chr1_3:62679667-62679686	None:intergenic	30.0%
TCACTTAGATTCCTTAAACA+TGG	+	chr1_3:62679680-62679699	Msa0131730:CDS	30.0%
AAAATGAAACTTTGTCTCCA+AGG	+	chr1_3:62679784-62679803	Msa0131730:CDS	30.0%
TCTAAATATGCTGCATTCTT+AGG	-	chr1_3:62679879-62679898	None:intergenic	30.0%
TAAGAATGCAGCATATTTAG+AGG	+	chr1_3:62679878-62679897	Msa0131730:CDS	30.0%
CGAGAGATTCAGAAAATAAT+AGG	+	chr1_3:62680078-62680097	Msa0131730:CDS	30.0%
AGGGATATGTTGAATTTGAA+TGG	+	chr1_3:62680164-62680183	Msa0131730:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	62678928	62682322	62678928	ID=Msa0131730;Name=Msa0131730
chr1_3	mRNA	62678928	62682322	62678928	ID=Msa0131730-mRNA-1;Parent=Msa0131730;Name=Msa0131730-mRNA-1;_AED=0.05;_eAED=0.05;_QI=45\|0.5\|0.4\|1\|1\|1\|5\|0\|806
chr1_3	exon	62678928	62679075	62678928	ID=Msa0131730-mRNA-1:exon:20888;Parent=Msa0131730-mRNA-1
chr1_3	exon	62679175	62679224	62679175	ID=Msa0131730-mRNA-1:exon:20889;Parent=Msa0131730-mRNA-1
chr1_3	exon	62679504	62681024	62679504	ID=Msa0131730-mRNA-1:exon:20890;Parent=Msa0131730-mRNA-1
chr1_3	exon	62681206	62681350	62681206	ID=Msa0131730-mRNA-1:exon:20891;Parent=Msa0131730-mRNA-1
chr1_3	exon	62681721	62682322	62681721	ID=Msa0131730-mRNA-1:exon:20892;Parent=Msa0131730-mRNA-1
chr1_3	five_prime_UTR	62678928	62678972	62678928	ID=Msa0131730-mRNA-1:five_prime_utr;Parent=Msa0131730-mRNA-1
chr1_3	CDS	62678973	62679075	62678973	ID=Msa0131730-mRNA-1:cds;Parent=Msa0131730-mRNA-1
chr1_3	CDS	62679175	62679224	62679175	ID=Msa0131730-mRNA-1:cds;Parent=Msa0131730-mRNA-1
chr1_3	CDS	62679504	62681024	62679504	ID=Msa0131730-mRNA-1:cds;Parent=Msa0131730-mRNA-1
chr1_3	CDS	62681206	62681350	62681206	ID=Msa0131730-mRNA-1:cds;Parent=Msa0131730-mRNA-1
chr1_3	CDS	62681721	62682322	62681721	ID=Msa0131730-mRNA-1:cds;Parent=Msa0131730-mRNA-1

Gene Sequence

>Msa0131730

ATGATAATGGAGAAAAGAAGTTACAAGGGAAGCTTCCTTAGCTTCTTTGATCGGAATGAAAAATCTCCAAAGAAACACTTTTATCACAATCCTAACTTACCTGATGTTTCAAACCATGCAAAGGGAAACATTGAAATCATGCCAATGTCACAGATAAAGATGGATGACAATGGAGAAAATCCTAGTGATATTGCAAGGAGTGATTTTAACTTTGCCTTATTATCAATTAGTAGTGATGATGATGAAGGGTGTGATAAGGCCCCAGGGCTAGTAGCCAGACTCATGGGTTTGGATTCATTGTCTCAGTGCTCCTCCACTTCATTATGTTGTCACTTAGATTCCTTAAACATGGCTCTTAAGTCAAACAAGTCTTCTTGTGATACCATTGAACCAAAGGCTCATAAAATGGGAAATACAACGATGAAAAGATTTCAAAATGAAACTTTGTCTCCAAGGTCTGCTAAACCCATTTCAGTTACTCATAACAAACATTTGTCTCCTATCAAAAGCCATGTTAGTATGAAGCCTAAGAATGCAGCATATTTAGAGGCATCTGCTAAGAGCATTGAGGCAAGTCCCCAACTATATATGAGGAGCACAATGTCTTCAGTTGGACATTTATCTGTTCCCTTGAGAACTCTTGATCTGCAAGAGAAATTGGAAACAGCGCAACACGGAACCAAGATGAGGAGCAAGTTATATAAGTCTACTTCAACCTTCAAAGTTTCGAGAGATTCAGAAAATAATAGGTCTTGCCTAGGTAAAGGAAAATCTGCTTCACTTGTAACACCATCCAATGCCGAGGTTCAAAGTAGGGATATGTTGAATTTGAATGGAAATAGGAGATACTTGAAGAAGAAAGAGATAAAATCAAACCAGAAAAATTGTAATGGCCAGAACAGCACCGTTCTTAGGCAAACCAGCAAAGGTAAATCAACTTCAAAAGTTGACACCAATAAGTCAACACAAACCTGTTCTTCAGAAAGTTCGACCAGCGCTAGGACGATAACAAACAAATGCGGTGTAAATTCTAACATTGAATCTAAAAGGTCCAGCACAAGAGTAACTGATAAGCAAAAGGAGTTTTCAGTATCCAAAAGAAAGAGTTCTTCCGAAAAGAAGAGGCGTGATCAGAATGACGCACGAGGTTCTGATAATGTAGTTAATACTCATGATAGAAAATCTATAAAATGTAATGTTACAATGGATGAAAGTACTTGCAATGATGCATATAGCATGACAGAAAGCAGGGATGTCATTTCATTTACATTTACATCTCCATTGAGGAAAAACATATCTCAGTCGCAGTTGACTACTAAGCAAGTGATGGAAACAAGGACCAGAATTGATGTTGATTCTTTTCATCACGTTGATAAGGTTTATCCTGAAAAATTATCATTATCTCCTACGAGGTTACATGTAATGGATCTTGATTCATTAAGTGTCATGCTATCTCACATTAACCCACCTCAATGTGCCTCAGAAATAGAACGGTGTTCTGTTGGTTTTGAATCTATTTTAGAAGACAGATTTAACAGCATGGTATGCAACACATCAAGGGAATGTGACAATAGCTTTGACTTGAACCTGCTTAGTGATAAATTGGGCAGCATGGATGACAATTGTTGTTCTTCAAATTATGATACAATGCTTGGCATGAATCAGCAACTTCAGATATCAGAACCAATGGAAGATCGAAGCTGTAACAACAAAAATGAAAGCGGAAACGATTTATGTTATCAGCATACAAGAACTGTTGCTACTTTTGAAAATCCTTTCATCAGCAAAAGTAACTTGGATAGTGAAGATAGCACATGTGGAGGCAGCAGAGTTTATTCTTCCATGCAAGATGAAGAAGTATATAGTTCTCAAATAAATGAATCTATATCACCTGAATATAAGATGAATTGGTTAGAGCAAAGCTCTACAAAATCATCAAGGATGATGGAACTTGAATATGTAAAGGATATACTCAGCAATGTAGAATTGATGGCAGAAGAGACAGACAATATAATGATGCCAACTCTCTTTGATCTGTTGGAGAATCGGAGAACTGGTGTGGAAAGCTATGAAGAATACTCTAAGCTCAAAAGGAAAGCTATATTTGACTGTGTAAGTGAATGCATGGAATTAAGATGCAGGCAAGTTTTTGTTGAAAGGTGCAAAGCATGGCCTAGATGCATGGTGGCATCAGTGATGAGGAAAGGTTGGTTAGCAGAAGAAGTGTACAAGGAGATGTCGGAGTTTAGAAGCATGGAAGAAGAGGTGATGGTGGATGAGCTTGTTAGCAAGGACATGAGCACTCCATTGGGTAGATGGCTTGACTTTGACATTGAAGCCTTTGAAAATGGCTTGGAATTTGAGCTTCACATAGTTACCTATTTGATAGATGAATTGGTTTCTGATTTGTGGCTTGTTTAA

Protein sequence

>Msa0131730

MIMEKRSYKGSFLSFFDRNEKSPKKHFYHNPNLPDVSNHAKGNIEIMPMSQIKMDDNGENPSDIARSDFNFALLSISSDDDEGCDKAPGLVARLMGLDSLSQCSSTSLCCHLDSLNMALKSNKSSCDTIEPKAHKMGNTTMKRFQNETLSPRSAKPISVTHNKHLSPIKSHVSMKPKNAAYLEASAKSIEASPQLYMRSTMSSVGHLSVPLRTLDLQEKLETAQHGTKMRSKLYKSTSTFKVSRDSENNRSCLGKGKSASLVTPSNAEVQSRDMLNLNGNRRYLKKKEIKSNQKNCNGQNSTVLRQTSKGKSTSKVDTNKSTQTCSSESSTSARTITNKCGVNSNIESKRSSTRVTDKQKEFSVSKRKSSSEKKRRDQNDARGSDNVVNTHDRKSIKCNVTMDESTCNDAYSMTESRDVISFTFTSPLRKNISQSQLTTKQVMETRTRIDVDSFHHVDKVYPEKLSLSPTRLHVMDLDSLSVMLSHINPPQCASEIERCSVGFESILEDRFNSMVCNTSRECDNSFDLNLLSDKLGSMDDNCCSSNYDTMLGMNQQLQISEPMEDRSCNNKNESGNDLCYQHTRTVATFENPFISKSNLDSEDSTCGGSRVYSSMQDEEVYSSQINESISPEYKMNWLEQSSTKSSRMMELEYVKDILSNVELMAEETDNIMMPTLFDLLENRRTGVESYEEYSKLKRKAIFDCVSECMELRCRQVFVERCKAWPRCMVASVMRKGWLAEEVYKEMSEFRSMEEEVMVDELVSKDMSTPLGRWLDFDIEAFENGLEFELHIVTYLIDELVSDLWLV*