Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131730 | XP_003591202.3 | 86.207 | 812 | 88 | 7 | 1 | 806 | 1 | 794 | 0.0 | 1357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131730 | A0A396JRD2 | 87.076 | 766 | 84 | 5 | 47 | 806 | 1 | 757 | 0.0 | 1302 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032500 | Msa0131730 | 0.889590 | 2.113284e-73 | -8.615850e-47 |
| Msa0131730 | Msa0173090 | 0.889203 | 2.987418e-73 | -8.615850e-47 |
| Msa0131730 | Msa0666030 | 0.806870 | 6.666468e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131730 | MtrunA17_Chr1g0192581 | 87.076 | 766 | 84 | 5 | 47 | 806 | 1 | 757 | 0.0 | 1302 |
| Msa0131730 | MtrunA17_Chr7g0271711 | 47.408 | 926 | 349 | 27 | 3 | 806 | 1 | 910 | 0.0 | 663 |
| Msa0131730 | MtrunA17_Chr2g0294831 | 28.844 | 943 | 508 | 33 | 1 | 803 | 1 | 920 | 2.49e-72 | 254 |
| Msa0131730 | MtrunA17_Chr7g0250831 | 41.509 | 106 | 53 | 3 | 701 | 803 | 835 | 934 | 1.24e-14 | 78.2 |
| Msa0131730 | MtrunA17_Chr6g0457761 | 31.111 | 180 | 101 | 10 | 637 | 803 | 708 | 877 | 8.55e-14 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131730 | AT3G58650.1 | 29.506 | 871 | 481 | 31 | 2 | 803 | 3 | 809 | 1.20e-69 | 246 |
| Msa0131730 | AT5G26910.4 | 28.490 | 874 | 502 | 30 | 2 | 803 | 3 | 825 | 4.99e-62 | 225 |
| Msa0131730 | AT5G26910.1 | 28.490 | 874 | 502 | 30 | 2 | 803 | 3 | 825 | 4.99e-62 | 225 |
| Msa0131730 | AT5G26910.3 | 28.408 | 873 | 503 | 29 | 2 | 803 | 3 | 824 | 5.39e-62 | 224 |
| Msa0131730 | AT5G26910.2 | 29.459 | 499 | 285 | 17 | 2 | 441 | 3 | 493 | 1.10e-29 | 125 |
| Msa0131730 | AT3G05750.4 | 27.948 | 458 | 246 | 14 | 50 | 441 | 52 | 491 | 9.17e-23 | 104 |
| Msa0131730 | AT3G05750.4 | 36.478 | 159 | 89 | 3 | 650 | 803 | 638 | 789 | 5.68e-16 | 82.8 |
| Msa0131730 | AT3G05750.1 | 27.729 | 458 | 247 | 13 | 50 | 441 | 60 | 499 | 1.10e-22 | 104 |
| Msa0131730 | AT3G05750.1 | 36.478 | 159 | 89 | 3 | 650 | 803 | 646 | 797 | 5.97e-16 | 82.8 |
| Msa0131730 | AT3G05750.3 | 27.733 | 375 | 210 | 12 | 111 | 441 | 39 | 396 | 4.21e-19 | 92.8 |
| Msa0131730 | AT3G05750.3 | 36.478 | 159 | 89 | 3 | 650 | 803 | 543 | 694 | 5.27e-16 | 82.8 |
| Msa0131730 | AT3G05750.2 | 27.733 | 375 | 210 | 12 | 111 | 441 | 39 | 396 | 4.21e-19 | 92.8 |
| Msa0131730 | AT3G05750.2 | 36.478 | 159 | 89 | 3 | 650 | 803 | 543 | 694 | 5.27e-16 | 82.8 |
Find 153 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACCTGCTTAGTGATAAAT+TGG | 0.140845 | 1_3:+62680934 | Msa0131730:CDS |
| TCTAAATATGCTGCATTCTT+AGG | 0.165931 | 1_3:-62679876 | None:intergenic |
| GACATTGAAGCCTTTGAAAA+TGG | 0.201384 | 1_3:+62682230 | Msa0131730:CDS |
| TGACTTAAGAGCCATGTTTA+AGG | 0.207080 | 1_3:-62679691 | None:intergenic |
| TCTTGATCTGCAAGAGAAAT+TGG | 0.213960 | 1_3:+62679989 | Msa0131730:CDS |
| TGAAGTTGATTTACCTTTGC+TGG | 0.221523 | 1_3:-62680270 | None:intergenic |
| TCTTTCTTTGTTGATGATAA+TGG | 0.224980 | 1_3:+62678960 | Msa0131730:exon |
| TGAACCAAAGGCTCATAAAA+TGG | 0.230963 | 1_3:+62679737 | Msa0131730:CDS |
| ATCACTACTAATTGATAATA+AGG | 0.265224 | 1_3:-62679565 | None:intergenic |
| ACAGGTTTGTGTTGACTTAT+TGG | 0.265851 | 1_3:-62680303 | None:intergenic |
| GCCTAAGAACGGTGCTGTTC+TGG | 0.287283 | 1_3:-62680244 | None:intergenic |
| TGTTGAATTTGAATGGAAAT+AGG | 0.295796 | 1_3:+62680171 | Msa0131730:CDS |
| TTGTGATAAAAGTGTTTCTT+TGG | 0.305866 | 1_3:-62679039 | None:intergenic |
| TTCGGAAGAACTCTTTCTTT+TGG | 0.311731 | 1_3:-62680444 | None:intergenic |
| TACCTATTTGATAGATGAAT+TGG | 0.313922 | 1_3:+62682277 | Msa0131730:CDS |
| AACCAATTCATCTTATATTC+AGG | 0.323610 | 1_3:-62681792 | None:intergenic |
| ATGAGTCTGGCTACTAGCCC+TGG | 0.328479 | 1_3:-62679612 | None:intergenic |
| AAAAGAATCAACATCAATTC+TGG | 0.330223 | 1_3:-62680690 | None:intergenic |
| CGAGAGATTCAGAAAATAAT+AGG | 0.331801 | 1_3:+62680078 | Msa0131730:CDS |
| AAATAATTACCAGGTAAGTT+AGG | 0.347260 | 1_3:-62679063 | None:intergenic |
| ATTCTAACATTGAATCTAAA+AGG | 0.356408 | 1_3:+62680378 | Msa0131730:CDS |
| TGAATCTCTCGAAACTTTGA+AGG | 0.369472 | 1_3:-62680066 | None:intergenic |
| CACCTGAATATAAGATGAAT+TGG | 0.375181 | 1_3:+62681790 | Msa0131730:CDS |
| TCTAAAAGAACTCACTTTGT+TGG | 0.379512 | 1_3:+62678924 | None:intergenic |
| TAAGAATGCAGCATATTTAG+AGG | 0.380059 | 1_3:+62679878 | Msa0131730:CDS |
| TTTATGAGCCTTTGGTTCAA+TGG | 0.380731 | 1_3:-62679733 | None:intergenic |
| GCCAACTCTCTTTGATCTGT+TGG | 0.381202 | 1_3:+62681920 | Msa0131730:CDS |
| CTTATCAGTTACTCTTGTGC+TGG | 0.385816 | 1_3:-62680402 | None:intergenic |
| ACTCAGCAATGTAGAATTGA+TGG | 0.386018 | 1_3:+62681872 | Msa0131730:CDS |
| AGGGATATGTTGAATTTGAA+TGG | 0.390361 | 1_3:+62680164 | Msa0131730:CDS |
| AACCAATTCATCTATCAAAT+AGG | 0.394619 | 1_3:-62682279 | None:intergenic |
| TGGCATGAATCAGCAACTTC+AGG | 0.397356 | 1_3:+62681003 | Msa0131730:CDS |
| TGAGCACTCCATTGGGTAGA+TGG | 0.402874 | 1_3:+62682198 | Msa0131730:CDS |
| TCTTTGATCTGTTGGAGAAT+CGG | 0.419385 | 1_3:+62681928 | Msa0131730:CDS |
| GGTCGAACTTTCTGAAGAAC+AGG | 0.421894 | 1_3:-62680321 | None:intergenic |
| TGTGCTCCTCATATATAGTT+GGG | 0.423119 | 1_3:-62679928 | None:intergenic |
| ATGAATTGGTTTCTGATTTG+TGG | 0.425319 | 1_3:+62682291 | Msa0131730:CDS |
| TGAGTCTGGCTACTAGCCCT+GGG | 0.426455 | 1_3:-62679611 | None:intergenic |
| TCAAATTATGATACAATGCT+TGG | 0.428269 | 1_3:+62680983 | Msa0131730:CDS |
| AGTAGCCAGACTCATGGGTT+TGG | 0.431579 | 1_3:+62679620 | Msa0131730:CDS |
| TCCTACGAGGTTACATGTAA+TGG | 0.436748 | 1_3:+62680754 | Msa0131730:CDS |
| ATATAACTTGCTCCTCATCT+TGG | 0.439222 | 1_3:-62680030 | None:intergenic |
| TACAAAATCATCAAGGATGA+TGG | 0.444399 | 1_3:+62681827 | Msa0131730:CDS |
| TTGTTATGAGTAACTGAAAT+GGG | 0.447444 | 1_3:-62679816 | None:intergenic |
| GAACCAAAGGCTCATAAAAT+GGG | 0.450651 | 1_3:+62679738 | Msa0131730:CDS |
| TGAATCCAAACCCATGAGTC+TGG | 0.452723 | 1_3:-62679625 | None:intergenic |
| TGAAGCCTTTGAAAATGGCT+TGG | 0.457955 | 1_3:+62682235 | Msa0131730:CDS |
| GCCAGAACAGCACCGTTCTT+AGG | 0.459790 | 1_3:+62680243 | Msa0131730:CDS |
| TTTCATCAGCAAAAGTAACT+TGG | 0.461060 | 1_3:+62681307 | Msa0131730:CDS |
| ACTGATGCCACCATGCATCT+AGG | 0.461328 | 1_3:-62682074 | None:intergenic |
| ACAATTGTTTCAGATAAAGA+TGG | 0.464516 | 1_3:+62679491 | Msa0131730:intron |
| AAGAATACTCTAAGCTCAAA+AGG | 0.473263 | 1_3:+62681973 | Msa0131730:CDS |
| GAAGGGTGTGATAAGGCCCC+AGG | 0.473540 | 1_3:+62679594 | Msa0131730:CDS |
| AAAATGAAACTTTGTCTCCA+AGG | 0.473878 | 1_3:+62679784 | Msa0131730:CDS |
| GTTTGTTATCGTCCTAGCGC+TGG | 0.478195 | 1_3:-62680342 | None:intergenic |
| CAAGGACATGAGCACTCCAT+TGG | 0.478271 | 1_3:+62682190 | Msa0131730:CDS |
| GCTTCCTTAGCTTCTTTGAT+CGG | 0.480496 | 1_3:+62679004 | Msa0131730:CDS |
| TTTCAATGTTTCCCTTTGCA+TGG | 0.487929 | 1_3:-62679185 | None:intergenic |
| TTTGTTATGAGTAACTGAAA+TGG | 0.489794 | 1_3:-62679817 | None:intergenic |
| GAAATAGAACGGTGTTCTGT+TGG | 0.491216 | 1_3:+62680833 | Msa0131730:CDS |
| TTGTGCTCCTCATATATAGT+TGG | 0.491806 | 1_3:-62679929 | None:intergenic |
| TATCACAATCCTAACTTACC+TGG | 0.492317 | 1_3:+62679054 | Msa0131730:CDS |
| ATATACTTCTTCATCTTGCA+TGG | 0.495644 | 1_3:-62681742 | None:intergenic |
| ATTTCTGAGGCACATTGAGG+TGG | 0.497061 | 1_3:-62680815 | None:intergenic |
| AAGAGTAACTGATAAGCAAA+AGG | 0.502215 | 1_3:+62680409 | Msa0131730:CDS |
| TTACAGCTTCGATCTTCCAT+TGG | 0.504233 | 1_3:-62681215 | None:intergenic |
| CTGTTGGAGAATCGGAGAAC+TGG | 0.510605 | 1_3:+62681936 | Msa0131730:CDS |
| TGCCCAATTTATCACTAAGC+AGG | 0.510690 | 1_3:-62680937 | None:intergenic |
| AATAGGTCTTGCCTAGGTAA+AGG | 0.513285 | 1_3:+62680095 | Msa0131730:CDS |
| CTTTGAACCTCGGCATTGGA+TGG | 0.515084 | 1_3:-62680140 | None:intergenic |
| CCTACTTTGAACCTCGGCAT+TGG | 0.515663 | 1_3:-62680144 | None:intergenic |
| TGAAATCATGCCAATGTCAC+AGG | 0.515734 | 1_3:+62679203 | Msa0131730:CDS |
| GCATGGTATGCAACACATCA+AGG | 0.515846 | 1_3:+62680888 | Msa0131730:CDS |
| CAGAAAGTTCGACCAGCGCT+AGG | 0.516699 | 1_3:+62680330 | Msa0131730:CDS |
| CATTCCGATCAAAGAAGCTA+AGG | 0.517044 | 1_3:-62679008 | None:intergenic |
| GATGTTTCAAACCATGCAAA+GGG | 0.520211 | 1_3:+62679174 | Msa0131730:intron |
| CTGGTGTTTACCTGTGACAT+TGG | 0.521249 | 1_3:-62679213 | None:intergenic |
| TTGCAGATCAAGAGTTCTCA+AGG | 0.524434 | 1_3:-62679979 | None:intergenic |
| AAGCATGGAAGAAGAGGTGA+TGG | 0.525379 | 1_3:+62682151 | Msa0131730:CDS |
| CATATAGCATGACAGAAAGC+AGG | 0.529033 | 1_3:+62680579 | Msa0131730:CDS |
| GGGCTAGTAGCCAGACTCAT+GGG | 0.531216 | 1_3:+62679615 | Msa0131730:CDS |
| AATGGAGAAAAGAAGTTACA+AGG | 0.533794 | 1_3:+62678978 | Msa0131730:CDS |
| CAAGTCCCCAACTATATATG+AGG | 0.533920 | 1_3:+62679922 | Msa0131730:CDS |
| GTTAGCAGAAGAAGTGTACA+AGG | 0.536107 | 1_3:+62682112 | Msa0131730:CDS |
| GAAATGGGTTTAGCAGACCT+TGG | 0.538176 | 1_3:-62679801 | None:intergenic |
| GATGGAACTTGAATATGTAA+AGG | 0.538230 | 1_3:+62681845 | Msa0131730:CDS |
| GATGTCGGAGTTTAGAAGCA+TGG | 0.546019 | 1_3:+62682136 | Msa0131730:CDS |
| AAGGACATGAGCACTCCATT+GGG | 0.547496 | 1_3:+62682191 | Msa0131730:CDS |
| CATCAGTGATGAGGAAAGGT+TGG | 0.550514 | 1_3:+62682090 | Msa0131730:CDS |
| GAAAATAATAGGTCTTGCCT+AGG | 0.551230 | 1_3:+62680089 | Msa0131730:CDS |
| TCTATTTCTGAGGCACATTG+AGG | 0.551487 | 1_3:-62680818 | None:intergenic |
| TTGTGATACCATTGAACCAA+AGG | 0.551569 | 1_3:+62679725 | Msa0131730:CDS |
| CAATGCCGAGGTTCAAAGTA+GGG | 0.554685 | 1_3:+62680145 | Msa0131730:CDS |
| CCAATGCCGAGGTTCAAAGT+AGG | 0.555210 | 1_3:+62680144 | Msa0131730:CDS |
| TATAAAATGTAATGTTACAA+TGG | 0.555302 | 1_3:+62680535 | Msa0131730:CDS |
| AGGAGCACAATGTCTTCAGT+TGG | 0.557248 | 1_3:+62679942 | Msa0131730:CDS |
| CATGGAAGAAGAGGTGATGG+TGG | 0.557606 | 1_3:+62682154 | Msa0131730:CDS |
| AGGGCTAGTAGCCAGACTCA+TGG | 0.557813 | 1_3:+62679614 | Msa0131730:CDS |
| ATGGAGAAAAGAAGTTACAA+GGG | 0.561403 | 1_3:+62678979 | Msa0131730:CDS |
| GTTTAGAAGCATGGAAGAAG+AGG | 0.561464 | 1_3:+62682145 | Msa0131730:CDS |
| TTACATTTACATCTCCATTG+AGG | 0.562743 | 1_3:+62680615 | Msa0131730:CDS |
| TTTGCTGGTTTGCCTAAGAA+CGG | 0.562748 | 1_3:-62680255 | None:intergenic |
| AGAGTTCTTCCGAAAAGAAG+AGG | 0.565687 | 1_3:+62680453 | Msa0131730:CDS |
| CTAAGCAAGTGATGGAAACA+AGG | 0.566796 | 1_3:+62680666 | Msa0131730:CDS |
| TCCAACAGATCAAAGAGAGT+TGG | 0.567522 | 1_3:-62681921 | None:intergenic |
| TGATGATGAAGGGTGTGATA+AGG | 0.567960 | 1_3:+62679587 | Msa0131730:CDS |
| ATTAGTAGTGATGATGATGA+AGG | 0.568918 | 1_3:+62679576 | Msa0131730:CDS |
| TCACTCCTTGCAATATCACT+AGG | 0.574555 | 1_3:-62679531 | None:intergenic |
| TTGTTGAAAGGTGCAAAGCA+TGG | 0.577795 | 1_3:+62682051 | Msa0131730:CDS |
| AGAAGTGTACAAGGAGATGT+CGG | 0.578044 | 1_3:+62682121 | Msa0131730:CDS |
| TCTTAGGCTTCATACTAACA+TGG | 0.580559 | 1_3:-62679860 | None:intergenic |
| TAGTGATAAATTGGGCAGCA+TGG | 0.582742 | 1_3:+62680943 | Msa0131730:CDS |
| AGAACACCGTTCTATTTCTG+AGG | 0.582791 | 1_3:-62680828 | None:intergenic |
| AACCTGCTTAGTGATAAATT+GGG | 0.585492 | 1_3:+62680935 | Msa0131730:CDS |
| TCACTTAGATTCCTTAAACA+TGG | 0.585838 | 1_3:+62679680 | Msa0131730:CDS |
| TCTGTAGATATCAGAACCAA+TGG | 0.586401 | 1_3:+62681199 | Msa0131730:intron |
| AATGCATGGAATTAAGATGC+AGG | 0.588770 | 1_3:+62682021 | Msa0131730:CDS |
| AGATGTTTCAAACCATGCAA+AGG | 0.589368 | 1_3:+62679173 | Msa0131730:intron |
| TTTCTGAGGCACATTGAGGT+GGG | 0.592064 | 1_3:-62680814 | None:intergenic |
| AAAGCTCTACAAAATCATCA+AGG | 0.594973 | 1_3:+62681820 | Msa0131730:CDS |
| TAAGTGACAACATAATGAAG+TGG | 0.601855 | 1_3:-62679664 | None:intergenic |
| GTTGACTACTAAGCAAGTGA+TGG | 0.603259 | 1_3:+62680658 | Msa0131730:CDS |
| CATATCCCTACTTTGAACCT+CGG | 0.606736 | 1_3:-62680150 | None:intergenic |
| AAGTCAAGCCATCTACCCAA+TGG | 0.609117 | 1_3:-62682206 | None:intergenic |
| GTGCTCCTCATATATAGTTG+GGG | 0.610822 | 1_3:-62679927 | None:intergenic |
| CGCAACACGGAACCAAGATG+AGG | 0.611483 | 1_3:+62680018 | Msa0131730:CDS |
| AAAATCCTAGTGATATTGCA+AGG | 0.615461 | 1_3:+62679526 | Msa0131730:CDS |
| AGAAGACAGATTTAACAGCA+TGG | 0.621284 | 1_3:+62680871 | Msa0131730:CDS |
| GTGACAACATAATGAAGTGG+AGG | 0.623561 | 1_3:-62679661 | None:intergenic |
| GTTCTTAGGCAAACCAGCAA+AGG | 0.627546 | 1_3:+62680257 | Msa0131730:CDS |
| CATGGTATGCAACACATCAA+GGG | 0.628447 | 1_3:+62680889 | Msa0131730:CDS |
| CAAAGCATGGCCTAGATGCA+TGG | 0.630631 | 1_3:+62682064 | Msa0131730:CDS |
| TGACTGTGTAAGTGAATGCA+TGG | 0.630868 | 1_3:+62682007 | Msa0131730:CDS |
| GGTGGATGAGCTTGTTAGCA+AGG | 0.631696 | 1_3:+62682172 | Msa0131730:CDS |
| CAGATAAAGATGGATGACAA+TGG | 0.641256 | 1_3:+62679501 | Msa0131730:intron |
| GATAGTGAAGATAGCACATG+TGG | 0.644975 | 1_3:+62681329 | Msa0131730:CDS |
| ATATAGCATGACAGAAAGCA+GGG | 0.649280 | 1_3:+62680580 | Msa0131730:CDS |
| TGCAGATCAAGAGTTCTCAA+GGG | 0.654144 | 1_3:-62679978 | None:intergenic |
| GAGTCTGGCTACTAGCCCTG+GGG | 0.654903 | 1_3:-62679610 | None:intergenic |
| AATGTGCCTCAGAAATAGAA+CGG | 0.658499 | 1_3:+62680822 | Msa0131730:CDS |
| AAGGGTGTGATAAGGCCCCA+GGG | 0.660078 | 1_3:+62679595 | Msa0131730:CDS |
| TCCATTACATGTAACCTCGT+AGG | 0.664556 | 1_3:-62680755 | None:intergenic |
| CGTGATCAGAATGACGCACG+AGG | 0.670720 | 1_3:+62680476 | Msa0131730:CDS |
| GGCATCTGCTAAGAGCATTG+AGG | 0.678302 | 1_3:+62679899 | Msa0131730:CDS |
| GCATGGTGGCATCAGTGATG+AGG | 0.679121 | 1_3:+62682081 | Msa0131730:CDS |
| TTAGTAGTGATGATGATGAA+GGG | 0.685067 | 1_3:+62679577 | Msa0131730:CDS |
| GTGGCATCAGTGATGAGGAA+AGG | 0.685249 | 1_3:+62682086 | Msa0131730:CDS |
| GGAGAATCGGAGAACTGGTG+TGG | 0.691183 | 1_3:+62681941 | Msa0131730:CDS |
| TGTAACACCATCCAATGCCG+AGG | 0.692381 | 1_3:+62680133 | Msa0131730:CDS |
| AAATTGGAAACAGCGCAACA+CGG | 0.695462 | 1_3:+62680005 | Msa0131730:CDS |
| AGCATGGCCTAGATGCATGG+TGG | 0.715972 | 1_3:+62682067 | Msa0131730:CDS |
| AATTATCATTATCTCCTACG+AGG | 0.717855 | 1_3:+62680741 | Msa0131730:CDS |
| AGGACGATAACAAACAAATG+CGG | 0.767520 | 1_3:+62680350 | Msa0131730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTAATAATAATAAGAAA+GGG | - | chr1_3:62679476-62679495 | None:intergenic | 10.0% |
| !! | AATTGTAATAATAATAAGAA+AGG | - | chr1_3:62679477-62679496 | None:intergenic | 10.0% |
| !! | TATAAAATGTAATGTTACAA+TGG | + | chr1_3:62680535-62680554 | Msa0131730:CDS | 15.0% |
| !! | AAGAAAAAAATGGTTAAACT+AGG | - | chr1_3:62679266-62679285 | None:intergenic | 20.0% |
| !!! | ATCACTACTAATTGATAATA+AGG | - | chr1_3:62679568-62679587 | None:intergenic | 20.0% |
| !! | ATTCTAACATTGAATCTAAA+AGG | + | chr1_3:62680378-62680397 | Msa0131730:CDS | 20.0% |
| !!! | TTACTCATTTTCATTTGTTA+TGG | + | chr1_3:62681053-62681072 | Msa0131730:intron | 20.0% |
| !! | TAAACATAGTATATTATCCT+TGG | + | chr1_3:62681099-62681118 | Msa0131730:intron | 20.0% |
| !!! | GAACAAGCATTAATATTTTA+TGG | - | chr1_3:62681681-62681700 | None:intergenic | 20.0% |
| !!! | TCATATATAACCCTTTTTTT+AGG | + | chr1_3:62681699-62681718 | Msa0131730:intron | 20.0% |
| !!! | TCTTTCTTTGTTGATGATAA+TGG | + | chr1_3:62678960-62678979 | Msa0131730:exon | 25.0% |
| !!! | TTGTGATAAAAGTGTTTCTT+TGG | - | chr1_3:62679042-62679061 | None:intergenic | 25.0% |
| ! | AAATAATTACCAGGTAAGTT+AGG | - | chr1_3:62679066-62679085 | None:intergenic | 25.0% |
| ! | AAAGACTAGAAATAATTACC+AGG | - | chr1_3:62679075-62679094 | None:intergenic | 25.0% |
| ! | GAGCAAAAAATATTCAGAAT+AGG | - | chr1_3:62679143-62679162 | None:intergenic | 25.0% |
| ! | TTAAACTAGGAAACTAAGAA+AGG | - | chr1_3:62679253-62679272 | None:intergenic | 25.0% |
| ! | GTCTTAACAAAATGTCATTA+GGG | - | chr1_3:62679331-62679350 | None:intergenic | 25.0% |
| ! | TGTCTTAACAAAATGTCATT+AGG | - | chr1_3:62679332-62679351 | None:intergenic | 25.0% |
| !! | CTACATAAAACTTCCTTTTT+AGG | + | chr1_3:62679412-62679431 | Msa0131730:intron | 25.0% |
| ! | ACAATTGTTTCAGATAAAGA+TGG | + | chr1_3:62679491-62679510 | Msa0131730:intron | 25.0% |
| ! | TTGTTATGAGTAACTGAAAT+GGG | - | chr1_3:62679819-62679838 | None:intergenic | 25.0% |
| !! | TTTGTTATGAGTAACTGAAA+TGG | - | chr1_3:62679820-62679839 | None:intergenic | 25.0% |
| ! | TGTTGAATTTGAATGGAAAT+AGG | + | chr1_3:62680171-62680190 | Msa0131730:CDS | 25.0% |
| ! | TCAAACCAGAAAAATTGTAA+TGG | + | chr1_3:62680221-62680240 | Msa0131730:CDS | 25.0% |
| ! | AAAAGAATCAACATCAATTC+TGG | - | chr1_3:62680693-62680712 | None:intergenic | 25.0% |
| !! | GGAGATAATGATAATTTTTC+AGG | - | chr1_3:62680737-62680756 | None:intergenic | 25.0% |
| ! | TCAAATTATGATACAATGCT+TGG | + | chr1_3:62680983-62681002 | Msa0131730:CDS | 25.0% |
| ! | TGTAACAACAAAAATGAAAG+CGG | + | chr1_3:62681233-62681252 | Msa0131730:CDS | 25.0% |
| ! | ACTTCAAAGTTAAGCAAAAT+TGG | - | chr1_3:62681508-62681527 | None:intergenic | 25.0% |
| !!! | TATATAACCCTTTTTTTAGG+AGG | + | chr1_3:62681702-62681721 | Msa0131730:intron | 25.0% |
| ! | AACCAATTCATCTTATATTC+AGG | - | chr1_3:62681795-62681814 | None:intergenic | 25.0% |
| ! | TACCTATTTGATAGATGAAT+TGG | + | chr1_3:62682277-62682296 | Msa0131730:CDS | 25.0% |
| ! | AACCAATTCATCTATCAAAT+AGG | - | chr1_3:62682282-62682301 | None:intergenic | 25.0% |
| AATGGAGAAAAGAAGTTACA+AGG | + | chr1_3:62678978-62678997 | Msa0131730:CDS | 30.0% | |
| ATGGAGAAAAGAAGTTACAA+GGG | + | chr1_3:62678979-62678998 | Msa0131730:CDS | 30.0% | |
| ! | ACTTGTTAAGAAGCCTAAAA+AGG | - | chr1_3:62679428-62679447 | None:intergenic | 30.0% |
| AAAATCCTAGTGATATTGCA+AGG | + | chr1_3:62679526-62679545 | Msa0131730:CDS | 30.0% | |
| ! | ATTAGTAGTGATGATGATGA+AGG | + | chr1_3:62679576-62679595 | Msa0131730:CDS | 30.0% |
| ! | TTAGTAGTGATGATGATGAA+GGG | + | chr1_3:62679577-62679596 | Msa0131730:CDS | 30.0% |
| TAAGTGACAACATAATGAAG+TGG | - | chr1_3:62679667-62679686 | None:intergenic | 30.0% | |
| TCACTTAGATTCCTTAAACA+TGG | + | chr1_3:62679680-62679699 | Msa0131730:CDS | 30.0% | |
| AAAATGAAACTTTGTCTCCA+AGG | + | chr1_3:62679784-62679803 | Msa0131730:CDS | 30.0% | |
| ! | ATACTAACATGGCTTTTGAT+AGG | - | chr1_3:62679852-62679871 | None:intergenic | 30.0% |
| TCTAAATATGCTGCATTCTT+AGG | - | chr1_3:62679879-62679898 | None:intergenic | 30.0% | |
| TAAGAATGCAGCATATTTAG+AGG | + | chr1_3:62679878-62679897 | Msa0131730:CDS | 30.0% | |
| CGAGAGATTCAGAAAATAAT+AGG | + | chr1_3:62680078-62680097 | Msa0131730:CDS | 30.0% | |
| AGGGATATGTTGAATTTGAA+TGG | + | chr1_3:62680164-62680183 | Msa0131730:CDS | 30.0% | |
| AAGAGTAACTGATAAGCAAA+AGG | + | chr1_3:62680409-62680428 | Msa0131730:CDS | 30.0% | |
| TTACATTTACATCTCCATTG+AGG | + | chr1_3:62680615-62680634 | Msa0131730:CDS | 30.0% | |
| ! | TGAGATATGTTTTTCCTCAA+TGG | - | chr1_3:62680632-62680651 | None:intergenic | 30.0% |
| ! | TTCTTTTCATCACGTTGATA+AGG | + | chr1_3:62680706-62680725 | Msa0131730:CDS | 30.0% |
| AATTATCATTATCTCCTACG+AGG | + | chr1_3:62680741-62680760 | Msa0131730:CDS | 30.0% | |
| AACCTGCTTAGTGATAAATT+GGG | + | chr1_3:62680935-62680954 | Msa0131730:CDS | 30.0% | |
| ATATCTACAGAAGAGAAGAA+TGG | - | chr1_3:62681190-62681209 | None:intergenic | 30.0% | |
| !!! | AAGTTACTTTTGCTGATGAA+AGG | - | chr1_3:62681308-62681327 | None:intergenic | 30.0% |
| TTTCATCAGCAAAAGTAACT+TGG | + | chr1_3:62681307-62681326 | Msa0131730:CDS | 30.0% | |
| GCAAAATTATTCTTATCAGC+TGG | + | chr1_3:62681482-62681501 | Msa0131730:intron | 30.0% | |
| ATATACTTCTTCATCTTGCA+TGG | - | chr1_3:62681745-62681764 | None:intergenic | 30.0% | |
| CACCTGAATATAAGATGAAT+TGG | + | chr1_3:62681790-62681809 | Msa0131730:CDS | 30.0% | |
| AAAGCTCTACAAAATCATCA+AGG | + | chr1_3:62681820-62681839 | Msa0131730:CDS | 30.0% | |
| TACAAAATCATCAAGGATGA+TGG | + | chr1_3:62681827-62681846 | Msa0131730:CDS | 30.0% | |
| GATGGAACTTGAATATGTAA+AGG | + | chr1_3:62681845-62681864 | Msa0131730:CDS | 30.0% | |
| AAGAATACTCTAAGCTCAAA+AGG | + | chr1_3:62681973-62681992 | Msa0131730:CDS | 30.0% | |
| !! | AAATTCCAAGCCATTTTCAA+AGG | - | chr1_3:62682243-62682262 | None:intergenic | 30.0% |
| ! | ATGAATTGGTTTCTGATTTG+TGG | + | chr1_3:62682291-62682310 | Msa0131730:CDS | 30.0% |
| TATCACAATCCTAACTTACC+TGG | + | chr1_3:62679054-62679073 | Msa0131730:CDS | 35.0% | |
| AGATGTTTCAAACCATGCAA+AGG | + | chr1_3:62679173-62679192 | Msa0131730:intron | 35.0% | |
| GATGTTTCAAACCATGCAAA+GGG | + | chr1_3:62679174-62679193 | Msa0131730:intron | 35.0% | |
| TTTCAATGTTTCCCTTTGCA+TGG | - | chr1_3:62679188-62679207 | None:intergenic | 35.0% | |
| AAAGGTTGACAAAATCACAC+TGG | - | chr1_3:62679235-62679254 | None:intergenic | 35.0% | |
| TCGTGCTAACAAATTCTGTA+AGG | - | chr1_3:62679453-62679472 | None:intergenic | 35.0% | |
| CAGATAAAGATGGATGACAA+TGG | + | chr1_3:62679501-62679520 | Msa0131730:intron | 35.0% | |
| TGACTTAAGAGCCATGTTTA+AGG | - | chr1_3:62679694-62679713 | None:intergenic | 35.0% | |
| TTGTGATACCATTGAACCAA+AGG | + | chr1_3:62679725-62679744 | Msa0131730:CDS | 35.0% | |
| ! | TTTATGAGCCTTTGGTTCAA+TGG | - | chr1_3:62679736-62679755 | None:intergenic | 35.0% |
| TGAACCAAAGGCTCATAAAA+TGG | + | chr1_3:62679737-62679756 | Msa0131730:CDS | 35.0% | |
| GAACCAAAGGCTCATAAAAT+GGG | + | chr1_3:62679738-62679757 | Msa0131730:CDS | 35.0% | |
| ! | TTTCCCATTTTATGAGCCTT+TGG | - | chr1_3:62679744-62679763 | None:intergenic | 35.0% |
| TCTTAGGCTTCATACTAACA+TGG | - | chr1_3:62679863-62679882 | None:intergenic | 35.0% | |
| TGTGCTCCTCATATATAGTT+GGG | - | chr1_3:62679931-62679950 | None:intergenic | 35.0% | |
| TTGTGCTCCTCATATATAGT+TGG | - | chr1_3:62679932-62679951 | None:intergenic | 35.0% | |
| TCTTGATCTGCAAGAGAAAT+TGG | + | chr1_3:62679989-62680008 | Msa0131730:CDS | 35.0% | |
| !! | ATATAACTTGCTCCTCATCT+TGG | - | chr1_3:62680033-62680052 | None:intergenic | 35.0% |
| TGAATCTCTCGAAACTTTGA+AGG | - | chr1_3:62680069-62680088 | None:intergenic | 35.0% | |
| GAAAATAATAGGTCTTGCCT+AGG | + | chr1_3:62680089-62680108 | Msa0131730:CDS | 35.0% | |
| ! | AAGCAGATTTTCCTTTACCT+AGG | - | chr1_3:62680109-62680128 | None:intergenic | 35.0% |
| ! | TCTGGCCATTACAATTTTTC+TGG | - | chr1_3:62680229-62680248 | None:intergenic | 35.0% |
| ! | TGAAGTTGATTTACCTTTGC+TGG | - | chr1_3:62680273-62680292 | None:intergenic | 35.0% |
| !! | ACAGGTTTGTGTTGACTTAT+TGG | - | chr1_3:62680306-62680325 | None:intergenic | 35.0% |
| AGGACGATAACAAACAAATG+CGG | + | chr1_3:62680350-62680369 | Msa0131730:CDS | 35.0% | |
| ! | TTCGGAAGAACTCTTTCTTT+TGG | - | chr1_3:62680447-62680466 | None:intergenic | 35.0% |
| ATATAGCATGACAGAAAGCA+GGG | + | chr1_3:62680580-62680599 | Msa0131730:CDS | 35.0% | |
| AATGTGCCTCAGAAATAGAA+CGG | + | chr1_3:62680822-62680841 | Msa0131730:CDS | 35.0% | |
| AGAAGACAGATTTAACAGCA+TGG | + | chr1_3:62680871-62680890 | Msa0131730:CDS | 35.0% | |
| GAACCTGCTTAGTGATAAAT+TGG | + | chr1_3:62680934-62680953 | Msa0131730:CDS | 35.0% | |
| TATTATCCTTGGCAACTTTC+TGG | + | chr1_3:62681110-62681129 | Msa0131730:intron | 35.0% | |
| ATCAGTTAGTCAAAGAGATG+AGG | + | chr1_3:62681134-62681153 | Msa0131730:intron | 35.0% | |
| TCTGTAGATATCAGAACCAA+TGG | + | chr1_3:62681199-62681218 | Msa0131730:intron | 35.0% | |
| ! | CAGAAGTGTAAAGACAATCA+AGG | - | chr1_3:62681367-62681386 | None:intergenic | 35.0% |
| TCTCAAGGTTATTCAAAGCA+TGG | - | chr1_3:62681456-62681475 | None:intergenic | 35.0% | |
| ! | TAATTTTGCAGCATGTCTCA+AGG | - | chr1_3:62681471-62681490 | None:intergenic | 35.0% |
| ACTCAGCAATGTAGAATTGA+TGG | + | chr1_3:62681872-62681891 | Msa0131730:CDS | 35.0% | |
| TCTTTGATCTGTTGGAGAAT+CGG | + | chr1_3:62681928-62681947 | Msa0131730:CDS | 35.0% | |
| AATGCATGGAATTAAGATGC+AGG | + | chr1_3:62682021-62682040 | Msa0131730:CDS | 35.0% | |
| ! | GACATTGAAGCCTTTGAAAA+TGG | + | chr1_3:62682230-62682249 | Msa0131730:CDS | 35.0% |
| GCTTCCTTAGCTTCTTTGAT+CGG | + | chr1_3:62679004-62679023 | Msa0131730:CDS | 40.0% | |
| CATTCCGATCAAAGAAGCTA+AGG | - | chr1_3:62679011-62679030 | None:intergenic | 40.0% | |
| TGAAATCATGCCAATGTCAC+AGG | + | chr1_3:62679203-62679222 | Msa0131730:CDS | 40.0% | |
| TCACTCCTTGCAATATCACT+AGG | - | chr1_3:62679534-62679553 | None:intergenic | 40.0% | |
| ! | TGATGATGAAGGGTGTGATA+AGG | + | chr1_3:62679587-62679606 | Msa0131730:CDS | 40.0% |
| GTGACAACATAATGAAGTGG+AGG | - | chr1_3:62679664-62679683 | None:intergenic | 40.0% | |
| CAAGTCCCCAACTATATATG+AGG | + | chr1_3:62679922-62679941 | Msa0131730:CDS | 40.0% | |
| GTGCTCCTCATATATAGTTG+GGG | - | chr1_3:62679930-62679949 | None:intergenic | 40.0% | |
| TGCAGATCAAGAGTTCTCAA+GGG | - | chr1_3:62679981-62680000 | None:intergenic | 40.0% | |
| TTGCAGATCAAGAGTTCTCA+AGG | - | chr1_3:62679982-62680001 | None:intergenic | 40.0% | |
| AAATTGGAAACAGCGCAACA+CGG | + | chr1_3:62680005-62680024 | Msa0131730:CDS | 40.0% | |
| AATAGGTCTTGCCTAGGTAA+AGG | + | chr1_3:62680095-62680114 | Msa0131730:CDS | 40.0% | |
| CATATCCCTACTTTGAACCT+CGG | - | chr1_3:62680153-62680172 | None:intergenic | 40.0% | |
| !! | TTTGCTGGTTTGCCTAAGAA+CGG | - | chr1_3:62680258-62680277 | None:intergenic | 40.0% |
| CTTATCAGTTACTCTTGTGC+TGG | - | chr1_3:62680405-62680424 | None:intergenic | 40.0% | |
| AGAGTTCTTCCGAAAAGAAG+AGG | + | chr1_3:62680453-62680472 | Msa0131730:CDS | 40.0% | |
| CATATAGCATGACAGAAAGC+AGG | + | chr1_3:62680579-62680598 | Msa0131730:CDS | 40.0% | |
| GTTGACTACTAAGCAAGTGA+TGG | + | chr1_3:62680658-62680677 | Msa0131730:CDS | 40.0% | |
| ! | CTAAGCAAGTGATGGAAACA+AGG | + | chr1_3:62680666-62680685 | Msa0131730:CDS | 40.0% |
| TCCTACGAGGTTACATGTAA+TGG | + | chr1_3:62680754-62680773 | Msa0131730:CDS | 40.0% | |
| TCCATTACATGTAACCTCGT+AGG | - | chr1_3:62680758-62680777 | None:intergenic | 40.0% | |
| !! | TCTATTTCTGAGGCACATTG+AGG | - | chr1_3:62680821-62680840 | None:intergenic | 40.0% |
| !! | AGAACACCGTTCTATTTCTG+AGG | - | chr1_3:62680831-62680850 | None:intergenic | 40.0% |
| GAAATAGAACGGTGTTCTGT+TGG | + | chr1_3:62680833-62680852 | Msa0131730:CDS | 40.0% | |
| CATGGTATGCAACACATCAA+GGG | + | chr1_3:62680889-62680908 | Msa0131730:CDS | 40.0% | |
| TGCCCAATTTATCACTAAGC+AGG | - | chr1_3:62680940-62680959 | None:intergenic | 40.0% | |
| TAGTGATAAATTGGGCAGCA+TGG | + | chr1_3:62680943-62680962 | Msa0131730:CDS | 40.0% | |
| AGTTAGTCAAAGAGATGAGG+AGG | + | chr1_3:62681137-62681156 | Msa0131730:intron | 40.0% | |
| TTACAGCTTCGATCTTCCAT+TGG | - | chr1_3:62681218-62681237 | None:intergenic | 40.0% | |
| GATAGTGAAGATAGCACATG+TGG | + | chr1_3:62681329-62681348 | Msa0131730:CDS | 40.0% | |
| CGTCGTTATAAAACATGCAG+GGG | - | chr1_3:62681572-62681591 | None:intergenic | 40.0% | |
| GCGTCGTTATAAAACATGCA+GGG | - | chr1_3:62681573-62681592 | None:intergenic | 40.0% | |
| AGCGTCGTTATAAAACATGC+AGG | - | chr1_3:62681574-62681593 | None:intergenic | 40.0% | |
| GGATGTATGTATTTGTGCAG+AGG | - | chr1_3:62681660-62681679 | None:intergenic | 40.0% | |
| TCTGCTGCCTCCTAAAAAAA+GGG | - | chr1_3:62681712-62681731 | None:intergenic | 40.0% | |
| TCCAACAGATCAAAGAGAGT+TGG | - | chr1_3:62681924-62681943 | None:intergenic | 40.0% | |
| TGACTGTGTAAGTGAATGCA+TGG | + | chr1_3:62682007-62682026 | Msa0131730:CDS | 40.0% | |
| ! | GCAGGCAAGTTTTTGTTGAA+AGG | + | chr1_3:62682039-62682058 | Msa0131730:CDS | 40.0% |
| ! | TTGTTGAAAGGTGCAAAGCA+TGG | + | chr1_3:62682051-62682070 | Msa0131730:CDS | 40.0% |
| ! | GTTAGCAGAAGAAGTGTACA+AGG | + | chr1_3:62682112-62682131 | Msa0131730:CDS | 40.0% |
| ! | AGAAGTGTACAAGGAGATGT+CGG | + | chr1_3:62682121-62682140 | Msa0131730:CDS | 40.0% |
| ! | GTTTAGAAGCATGGAAGAAG+AGG | + | chr1_3:62682145-62682164 | Msa0131730:CDS | 40.0% |
| ! | TGAAGCCTTTGAAAATGGCT+TGG | + | chr1_3:62682235-62682254 | Msa0131730:CDS | 40.0% |
| CTGGTGTTTACCTGTGACAT+TGG | - | chr1_3:62679216-62679235 | None:intergenic | 45.0% | |
| TGAATCCAAACCCATGAGTC+TGG | - | chr1_3:62679628-62679647 | None:intergenic | 45.0% | |
| ! | GAAATGGGTTTAGCAGACCT+TGG | - | chr1_3:62679804-62679823 | None:intergenic | 45.0% |
| ! | AGGAGCACAATGTCTTCAGT+TGG | + | chr1_3:62679942-62679961 | Msa0131730:CDS | 45.0% |
| CAATGCCGAGGTTCAAAGTA+GGG | + | chr1_3:62680145-62680164 | Msa0131730:CDS | 45.0% | |
| GTTCTTAGGCAAACCAGCAA+AGG | + | chr1_3:62680257-62680276 | Msa0131730:CDS | 45.0% | |
| ! | GGTCGAACTTTCTGAAGAAC+AGG | - | chr1_3:62680324-62680343 | None:intergenic | 45.0% |
| ! | CTGATCACGCCTCTTCTTTT+CGG | - | chr1_3:62680465-62680484 | None:intergenic | 45.0% |
| !! | TTTCTGAGGCACATTGAGGT+GGG | - | chr1_3:62680817-62680836 | None:intergenic | 45.0% |
| !! | ATTTCTGAGGCACATTGAGG+TGG | - | chr1_3:62680818-62680837 | None:intergenic | 45.0% |
| GCATGGTATGCAACACATCA+AGG | + | chr1_3:62680888-62680907 | Msa0131730:CDS | 45.0% | |
| TGGCATGAATCAGCAACTTC+AGG | + | chr1_3:62681003-62681022 | Msa0131730:CDS | 45.0% | |
| CTCTGCTGCCTCCTAAAAAA+AGG | - | chr1_3:62681713-62681732 | None:intergenic | 45.0% | |
| GCCAACTCTCTTTGATCTGT+TGG | + | chr1_3:62681920-62681939 | Msa0131730:CDS | 45.0% | |
| CATCAGTGATGAGGAAAGGT+TGG | + | chr1_3:62682090-62682109 | Msa0131730:CDS | 45.0% | |
| GATGTCGGAGTTTAGAAGCA+TGG | + | chr1_3:62682136-62682155 | Msa0131730:CDS | 45.0% | |
| AAGCATGGAAGAAGAGGTGA+TGG | + | chr1_3:62682151-62682170 | Msa0131730:CDS | 45.0% | |
| AAGGACATGAGCACTCCATT+GGG | + | chr1_3:62682191-62682210 | Msa0131730:CDS | 45.0% | |
| AAGTCAAGCCATCTACCCAA+TGG | - | chr1_3:62682209-62682228 | None:intergenic | 45.0% | |
| !! | AAAAAATTAAAAGAAAAAAA+TGG | - | chr1_3:62679276-62679295 | None:intergenic | 5.0% |
| !!! | TTTTTTCTTTTAATTTTTTA+TGG | + | chr1_3:62679277-62679296 | Msa0131730:intron | 5.0% |
| AGTAGCCAGACTCATGGGTT+TGG | + | chr1_3:62679620-62679639 | Msa0131730:CDS | 50.0% | |
| !! | GGCATCTGCTAAGAGCATTG+AGG | + | chr1_3:62679899-62679918 | Msa0131730:CDS | 50.0% |
| TGTAACACCATCCAATGCCG+AGG | + | chr1_3:62680133-62680152 | Msa0131730:CDS | 50.0% | |
| ! | CTTTGAACCTCGGCATTGGA+TGG | - | chr1_3:62680143-62680162 | None:intergenic | 50.0% |
| CCTACTTTGAACCTCGGCAT+TGG | - | chr1_3:62680147-62680166 | None:intergenic | 50.0% | |
| CCAATGCCGAGGTTCAAAGT+AGG | + | chr1_3:62680144-62680163 | Msa0131730:CDS | 50.0% | |
| !! | GTTTGTTATCGTCCTAGCGC+TGG | - | chr1_3:62680345-62680364 | None:intergenic | 50.0% |
| CTGATGCCAGAAAGTTGCCA+AGG | - | chr1_3:62681119-62681138 | None:intergenic | 50.0% | |
| CTGTTGGAGAATCGGAGAAC+TGG | + | chr1_3:62681936-62681955 | Msa0131730:CDS | 50.0% | |
| CAAAGCATGGCCTAGATGCA+TGG | + | chr1_3:62682064-62682083 | Msa0131730:CDS | 50.0% | |
| ACTGATGCCACCATGCATCT+AGG | - | chr1_3:62682077-62682096 | None:intergenic | 50.0% | |
| GTGGCATCAGTGATGAGGAA+AGG | + | chr1_3:62682086-62682105 | Msa0131730:CDS | 50.0% | |
| ! | CATGGAAGAAGAGGTGATGG+TGG | + | chr1_3:62682154-62682173 | Msa0131730:CDS | 50.0% |
| !! | GGTGGATGAGCTTGTTAGCA+AGG | + | chr1_3:62682172-62682191 | Msa0131730:CDS | 50.0% |
| CAAGGACATGAGCACTCCAT+TGG | + | chr1_3:62682190-62682209 | Msa0131730:CDS | 50.0% | |
| TGAGCACTCCATTGGGTAGA+TGG | + | chr1_3:62682198-62682217 | Msa0131730:CDS | 50.0% | |
| ! | AAGGGTGTGATAAGGCCCCA+GGG | + | chr1_3:62679595-62679614 | Msa0131730:CDS | 55.0% |
| TGAGTCTGGCTACTAGCCCT+GGG | - | chr1_3:62679614-62679633 | None:intergenic | 55.0% | |
| ATGAGTCTGGCTACTAGCCC+TGG | - | chr1_3:62679615-62679634 | None:intergenic | 55.0% | |
| ! | AGGGCTAGTAGCCAGACTCA+TGG | + | chr1_3:62679614-62679633 | Msa0131730:CDS | 55.0% |
| ! | GGGCTAGTAGCCAGACTCAT+GGG | + | chr1_3:62679615-62679634 | Msa0131730:CDS | 55.0% |
| CGCAACACGGAACCAAGATG+AGG | + | chr1_3:62680018-62680037 | Msa0131730:CDS | 55.0% | |
| GCCAGAACAGCACCGTTCTT+AGG | + | chr1_3:62680243-62680262 | Msa0131730:CDS | 55.0% | |
| !! | GCCTAAGAACGGTGCTGTTC+TGG | - | chr1_3:62680247-62680266 | None:intergenic | 55.0% |
| CAGAAAGTTCGACCAGCGCT+AGG | + | chr1_3:62680330-62680349 | Msa0131730:CDS | 55.0% | |
| CGTGATCAGAATGACGCACG+AGG | + | chr1_3:62680476-62680495 | Msa0131730:CDS | 55.0% | |
| GGAGAATCGGAGAACTGGTG+TGG | + | chr1_3:62681941-62681960 | Msa0131730:CDS | 55.0% | |
| AGCATGGCCTAGATGCATGG+TGG | + | chr1_3:62682067-62682086 | Msa0131730:CDS | 55.0% | |
| GCATGGTGGCATCAGTGATG+AGG | + | chr1_3:62682081-62682100 | Msa0131730:CDS | 55.0% | |
| ! | GAAGGGTGTGATAAGGCCCC+AGG | + | chr1_3:62679594-62679613 | Msa0131730:CDS | 60.0% |
| GAGTCTGGCTACTAGCCCTG+GGG | - | chr1_3:62679613-62679632 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 62678928 | 62682322 | 62678928 | ID=Msa0131730;Name=Msa0131730 |
| chr1_3 | mRNA | 62678928 | 62682322 | 62678928 | ID=Msa0131730-mRNA-1;Parent=Msa0131730;Name=Msa0131730-mRNA-1;_AED=0.05;_eAED=0.05;_QI=45|0.5|0.4|1|1|1|5|0|806 |
| chr1_3 | exon | 62678928 | 62679075 | 62678928 | ID=Msa0131730-mRNA-1:exon:20888;Parent=Msa0131730-mRNA-1 |
| chr1_3 | exon | 62679175 | 62679224 | 62679175 | ID=Msa0131730-mRNA-1:exon:20889;Parent=Msa0131730-mRNA-1 |
| chr1_3 | exon | 62679504 | 62681024 | 62679504 | ID=Msa0131730-mRNA-1:exon:20890;Parent=Msa0131730-mRNA-1 |
| chr1_3 | exon | 62681206 | 62681350 | 62681206 | ID=Msa0131730-mRNA-1:exon:20891;Parent=Msa0131730-mRNA-1 |
| chr1_3 | exon | 62681721 | 62682322 | 62681721 | ID=Msa0131730-mRNA-1:exon:20892;Parent=Msa0131730-mRNA-1 |
| chr1_3 | five_prime_UTR | 62678928 | 62678972 | 62678928 | ID=Msa0131730-mRNA-1:five_prime_utr;Parent=Msa0131730-mRNA-1 |
| chr1_3 | CDS | 62678973 | 62679075 | 62678973 | ID=Msa0131730-mRNA-1:cds;Parent=Msa0131730-mRNA-1 |
| chr1_3 | CDS | 62679175 | 62679224 | 62679175 | ID=Msa0131730-mRNA-1:cds;Parent=Msa0131730-mRNA-1 |
| chr1_3 | CDS | 62679504 | 62681024 | 62679504 | ID=Msa0131730-mRNA-1:cds;Parent=Msa0131730-mRNA-1 |
| chr1_3 | CDS | 62681206 | 62681350 | 62681206 | ID=Msa0131730-mRNA-1:cds;Parent=Msa0131730-mRNA-1 |
| chr1_3 | CDS | 62681721 | 62682322 | 62681721 | ID=Msa0131730-mRNA-1:cds;Parent=Msa0131730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
