Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173090 | A0A396JRD2 | 86.945 | 766 | 85 | 5 | 47 | 806 | 1 | 757 | 0.0 | 1302 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022640 | Msa0173090 | 0.800892 | 1.164718e-48 | -8.615850e-47 |
| Msa0032500 | Msa0173090 | 0.948016 | 2.172596e-106 | -8.615850e-47 |
| Msa0131730 | Msa0173090 | 0.889203 | 2.987418e-73 | -8.615850e-47 |
| Msa0161680 | Msa0173090 | 0.803099 | 4.096995e-49 | -8.615850e-47 |
| Msa0173090 | Msa0191040 | 0.806215 | 9.167546e-50 | -8.615850e-47 |
| Msa0173090 | Msa0206800 | 0.807775 | 4.286518e-50 | -8.615850e-47 |
| Msa0173090 | Msa0233340 | 0.806028 | 1.003391e-49 | -8.615850e-47 |
| Msa0173090 | Msa0236110 | 0.802840 | 4.635596e-49 | -8.615850e-47 |
| Msa0173090 | Msa0236440 | 0.803889 | 2.810600e-49 | -8.615850e-47 |
| Msa0173090 | Msa0251240 | 0.806980 | 6.320307e-50 | -8.615850e-47 |
| Msa0173090 | Msa0271040 | 0.802303 | 5.980698e-49 | -8.615850e-47 |
| Msa0173090 | Msa0288190 | 0.802530 | 5.370233e-49 | -8.615850e-47 |
| Msa0173090 | Msa0309350 | 0.802858 | 4.595740e-49 | -8.615850e-47 |
| Msa0173090 | Msa0311690 | 0.801354 | 9.366302e-49 | -8.615850e-47 |
| Msa0173090 | Msa0371570 | 0.805833 | 1.102990e-49 | -8.615850e-47 |
| Msa0173090 | Msa0465930 | 0.813927 | 1.997878e-51 | -8.615850e-47 |
| Msa0173090 | Msa0465970 | 0.815963 | 7.060265e-52 | -8.615850e-47 |
| Msa0173090 | Msa0517330 | 0.803756 | 2.995273e-49 | -8.615850e-47 |
| Msa0173090 | Msa0531430 | 0.810352 | 1.202790e-50 | -8.615850e-47 |
| Msa0173090 | Msa0611380 | 0.807320 | 5.353475e-50 | -8.615850e-47 |
| Msa0173090 | Msa0618290 | 0.803144 | 4.010306e-49 | -8.615850e-47 |
| Msa0173090 | Msa0631120 | 0.800309 | 1.530714e-48 | -8.615850e-47 |
| Msa0173090 | Msa0666030 | 0.813815 | 2.114506e-51 | -8.615850e-47 |
| Msa0173090 | Msa0870620 | 0.800415 | 1.456530e-48 | -8.615850e-47 |
| Msa0173090 | Msa0898370 | 0.809190 | 2.139032e-50 | -8.615850e-47 |
| Msa0173090 | Msa1020720 | 0.803231 | 3.847396e-49 | -8.615850e-47 |
| Msa0173090 | Msa1034680 | 0.808645 | 2.797327e-50 | -8.615850e-47 |
| Msa0173090 | Msa1218480 | 0.808471 | 3.047422e-50 | -8.615850e-47 |
| Msa0173090 | Msa1289280 | 0.809115 | 2.219777e-50 | -8.615850e-47 |
| Msa0173090 | Msa1397340 | 0.803167 | 3.967489e-49 | -8.615850e-47 |
| Msa0173090 | Msa1440340 | 0.800526 | 1.383007e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173090 | MtrunA17_Chr1g0192581 | 86.945 | 766 | 85 | 5 | 47 | 806 | 1 | 757 | 0.0 | 1302 |
| Msa0173090 | MtrunA17_Chr7g0271711 | 47.624 | 926 | 347 | 27 | 3 | 806 | 1 | 910 | 0.0 | 664 |
| Msa0173090 | MtrunA17_Chr2g0294831 | 29.070 | 946 | 502 | 35 | 1 | 803 | 1 | 920 | 4.50e-72 | 254 |
| Msa0173090 | MtrunA17_Chr7g0250831 | 39.623 | 106 | 55 | 3 | 701 | 803 | 835 | 934 | 6.32e-13 | 72.8 |
| Msa0173090 | MtrunA17_Chr6g0457761 | 28.492 | 179 | 107 | 8 | 637 | 803 | 708 | 877 | 2.88e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173090 | AT3G58650.1 | 29.350 | 862 | 494 | 30 | 2 | 803 | 3 | 809 | 1.37e-68 | 243 |
| Msa0173090 | AT5G26910.3 | 28.293 | 873 | 504 | 29 | 2 | 803 | 3 | 824 | 5.04e-60 | 219 |
| Msa0173090 | AT5G26910.4 | 28.375 | 874 | 503 | 30 | 2 | 803 | 3 | 825 | 5.14e-60 | 219 |
| Msa0173090 | AT5G26910.1 | 28.375 | 874 | 503 | 30 | 2 | 803 | 3 | 825 | 5.14e-60 | 219 |
| Msa0173090 | AT5G26910.2 | 29.600 | 500 | 286 | 17 | 2 | 442 | 3 | 495 | 3.15e-29 | 124 |
| Msa0173090 | AT3G05750.3 | 35.220 | 159 | 91 | 3 | 650 | 803 | 543 | 694 | 2.85e-14 | 77.4 |
| Msa0173090 | AT3G05750.2 | 35.220 | 159 | 91 | 3 | 650 | 803 | 543 | 694 | 2.85e-14 | 77.4 |
| Msa0173090 | AT3G05750.4 | 35.220 | 159 | 91 | 3 | 650 | 803 | 638 | 789 | 3.08e-14 | 77.4 |
| Msa0173090 | AT3G05750.1 | 35.220 | 159 | 91 | 3 | 650 | 803 | 646 | 797 | 3.35e-14 | 77.4 |
Find 156 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACCTGCTTAGTGATAAAT+TGG | 0.140845 | 1_4:+58275424 | Msa0173090:CDS |
| TCTAAATATGCTGCATTCTT+AGG | 0.165931 | 1_4:-58274366 | None:intergenic |
| GACATTGAAGCCTTTGAAAA+TGG | 0.201384 | 1_4:+58276715 | Msa0173090:CDS |
| TGACTTAAGAGCCATGTTTA+AGG | 0.207080 | 1_4:-58274181 | None:intergenic |
| TCTTGATCTGCAAGAGAAAT+TGG | 0.213960 | 1_4:+58274479 | Msa0173090:CDS |
| ACAAGTTTGTGTTGACTTAT+TGG | 0.216757 | 1_4:-58274793 | None:intergenic |
| TGAAGTTGATTTACCTTTGC+TGG | 0.221523 | 1_4:-58274760 | None:intergenic |
| TCTTTCTTTGTTGATGATAA+TGG | 0.224980 | 1_4:+58273449 | Msa0173090:exon |
| TGAACCAAAGGCTCATAAAA+TGG | 0.230963 | 1_4:+58274227 | Msa0173090:CDS |
| TCTAAAAGAACTCACTTTCT+TGG | 0.248947 | 1_4:+58273413 | None:intergenic |
| ATCACTACTAATTGATAATA+AGG | 0.265224 | 1_4:-58274055 | None:intergenic |
| GCCTAAGAACGGTGCTGTTC+TGG | 0.287283 | 1_4:-58274734 | None:intergenic |
| TTCTGAAGAACTCTTTCTTT+TGG | 0.289753 | 1_4:-58274934 | None:intergenic |
| TGTTGAATTTGAATGGAAAT+AGG | 0.295796 | 1_4:+58274661 | Msa0173090:CDS |
| TTGTGATAAAAGTGTTTCTT+TGG | 0.305866 | 1_4:-58273528 | None:intergenic |
| TACCTATTTGATAGATGAAT+TGG | 0.313922 | 1_4:+58276762 | Msa0173090:CDS |
| AACCAATTCATCTTATATTC+AGG | 0.323610 | 1_4:-58276277 | None:intergenic |
| ATGAGTCTGGCTACTAGCCC+TGG | 0.328479 | 1_4:-58274102 | None:intergenic |
| AAAAGAATCAACATCAATTC+TGG | 0.330223 | 1_4:-58275180 | None:intergenic |
| CGAGAGATTCAGAAAATAAT+AGG | 0.330370 | 1_4:+58274568 | Msa0173090:CDS |
| AAATAATTACCAGGTAAGTT+AGG | 0.347260 | 1_4:-58273552 | None:intergenic |
| TGAATCTCTCGAACCTTTGA+AGG | 0.348909 | 1_4:-58274556 | None:intergenic |
| ATTCTAACATTGAATCTAAA+AGG | 0.356408 | 1_4:+58274868 | Msa0173090:CDS |
| CACCTGAATATAAGATGAAT+TGG | 0.375181 | 1_4:+58276275 | Msa0173090:CDS |
| TAAGAATGCAGCATATTTAG+AGG | 0.380059 | 1_4:+58274368 | Msa0173090:CDS |
| TTTATGAGCCTTTGGTTCAA+TGG | 0.380731 | 1_4:-58274223 | None:intergenic |
| GCCAACTCTCTTTGATCTGT+TGG | 0.381202 | 1_4:+58276405 | Msa0173090:CDS |
| CTTATCAGTTACTCTTGTGC+TGG | 0.385816 | 1_4:-58274892 | None:intergenic |
| ACTCAGCAATGTAGAATTGA+TGG | 0.386018 | 1_4:+58276357 | Msa0173090:CDS |
| AGGGATATGTTGAATTTGAA+TGG | 0.390361 | 1_4:+58274654 | Msa0173090:CDS |
| ATGCAAGATGAAGAAGTATA+TGG | 0.393979 | 1_4:+58276229 | Msa0173090:CDS |
| AACCAATTCATCTATCAAAT+AGG | 0.394619 | 1_4:-58276764 | None:intergenic |
| TGGCATGAATCAGCAACTTC+AGG | 0.397356 | 1_4:+58275493 | Msa0173090:CDS |
| TGAGCACTCCATTGGGTAGA+TGG | 0.402874 | 1_4:+58276683 | Msa0173090:CDS |
| TCTTTGATCTGTTGGAGAAT+CGG | 0.419385 | 1_4:+58276413 | Msa0173090:CDS |
| TGTGCTCCTCATATATAGTT+GGG | 0.423119 | 1_4:-58274418 | None:intergenic |
| ATGAATTGGTTTCTGATTTG+TGG | 0.425319 | 1_4:+58276776 | Msa0173090:CDS |
| TGAGTCTGGCTACTAGCCCT+GGG | 0.426455 | 1_4:-58274101 | None:intergenic |
| TCAAATTATGATACAATGCT+TGG | 0.428269 | 1_4:+58275473 | Msa0173090:CDS |
| AGTAGCCAGACTCATGGGTT+TGG | 0.431579 | 1_4:+58274110 | Msa0173090:CDS |
| TCCTACGAGGTTACATGTAA+TGG | 0.436748 | 1_4:+58275244 | Msa0173090:CDS |
| ATATAACTTGCTCCTCATCT+TGG | 0.439222 | 1_4:-58274520 | None:intergenic |
| TACAAAATCATCAAGGATGA+TGG | 0.444399 | 1_4:+58276312 | Msa0173090:CDS |
| AAAGGTTGGTTAGCAGAAGA+AGG | 0.447131 | 1_4:+58276589 | Msa0173090:CDS |
| TTGTTATGAGTAACTGAAAT+GGG | 0.447444 | 1_4:-58274306 | None:intergenic |
| GAACCAAAGGCTCATAAAAT+GGG | 0.450651 | 1_4:+58274228 | Msa0173090:CDS |
| TGAATCCAAACCCATGAGTC+TGG | 0.452723 | 1_4:-58274115 | None:intergenic |
| TGAAGCCTTTGAAAATGGCT+TGG | 0.457955 | 1_4:+58276720 | Msa0173090:CDS |
| GCCAGAACAGCACCGTTCTT+AGG | 0.459790 | 1_4:+58274733 | Msa0173090:CDS |
| TTACAGCTTGGATCTTCCAT+TGG | 0.460975 | 1_4:-58275704 | None:intergenic |
| TTTCATCAGCAAAAGTAACT+TGG | 0.461060 | 1_4:+58275796 | Msa0173090:CDS |
| ACTGATGCCACCATGCATCT+AGG | 0.461328 | 1_4:-58276559 | None:intergenic |
| ACAATTGTTTCAGATAAAGA+TGG | 0.464516 | 1_4:+58273981 | Msa0173090:intron |
| AAGAATACTCTAAGCTCAAA+AGG | 0.473263 | 1_4:+58276458 | Msa0173090:CDS |
| GAAGGGTGTGATAAGGCCCC+AGG | 0.473540 | 1_4:+58274084 | Msa0173090:CDS |
| AAAATGAAACTTTGTCTCCA+AGG | 0.473878 | 1_4:+58274274 | Msa0173090:CDS |
| GTTTGTTATCGTCCTAGCGC+TGG | 0.478195 | 1_4:-58274832 | None:intergenic |
| CAAGGACATGAGCACTCCAT+TGG | 0.478271 | 1_4:+58276675 | Msa0173090:CDS |
| GCTTCCTTAGCTTCTTTGAT+CGG | 0.480496 | 1_4:+58273493 | Msa0173090:CDS |
| TTTCAATGTTTCCCTTTGCA+TGG | 0.487929 | 1_4:-58273674 | None:intergenic |
| TTTGTTATGAGTAACTGAAA+TGG | 0.489794 | 1_4:-58274307 | None:intergenic |
| GAAATAGAACGGTGTTCTGT+TGG | 0.491216 | 1_4:+58275323 | Msa0173090:CDS |
| TTGTGCTCCTCATATATAGT+TGG | 0.491806 | 1_4:-58274419 | None:intergenic |
| TATCACAATCCTAACTTACC+TGG | 0.492317 | 1_4:+58273543 | Msa0173090:CDS |
| ATATACTTCTTCATCTTGCA+TGG | 0.495644 | 1_4:-58276227 | None:intergenic |
| ATTTCTGAGGCACATTGAGG+TGG | 0.497061 | 1_4:-58275305 | None:intergenic |
| AAGAGTAACTGATAAGCAAA+AGG | 0.502215 | 1_4:+58274899 | Msa0173090:CDS |
| CTGTTGGAGAATCGGAGAAC+TGG | 0.510605 | 1_4:+58276421 | Msa0173090:CDS |
| TGCCCAATTTATCACTAAGC+AGG | 0.510690 | 1_4:-58275427 | None:intergenic |
| AAGTCTACTTCAACCTTCAA+AGG | 0.512513 | 1_4:+58274543 | Msa0173090:CDS |
| AATAGGTCTTGCCTAGGTAA+AGG | 0.513285 | 1_4:+58274585 | Msa0173090:CDS |
| CTTTGAACCTCGGCATTGGA+TGG | 0.515084 | 1_4:-58274630 | None:intergenic |
| CCTACTTTGAACCTCGGCAT+TGG | 0.515663 | 1_4:-58274634 | None:intergenic |
| TGAAATCATGCCAATGTCAC+AGG | 0.515734 | 1_4:+58273692 | Msa0173090:CDS |
| GCATGGTATGCAACACATCA+AGG | 0.515846 | 1_4:+58275378 | Msa0173090:CDS |
| CAGAAAGTTCGACCAGCGCT+AGG | 0.516699 | 1_4:+58274820 | Msa0173090:CDS |
| CATTCCGATCAAAGAAGCTA+AGG | 0.517044 | 1_4:-58273497 | None:intergenic |
| GATGTTTCAAACCATGCAAA+GGG | 0.520211 | 1_4:+58273663 | Msa0173090:intron |
| CTGGTGTTTACCTGTGACAT+TGG | 0.521249 | 1_4:-58273702 | None:intergenic |
| GTTAGCAGAAGAAGGGTACA+AGG | 0.523262 | 1_4:+58276597 | Msa0173090:CDS |
| TTGCAGATCAAGAGTTCTCA+AGG | 0.524434 | 1_4:-58274469 | None:intergenic |
| AAGCATGGAAGAAGAGGTGA+TGG | 0.525379 | 1_4:+58276636 | Msa0173090:CDS |
| GGGCTAGTAGCCAGACTCAT+GGG | 0.531216 | 1_4:+58274105 | Msa0173090:CDS |
| AATGGAGAAAAGAAGTTACA+AGG | 0.533794 | 1_4:+58273467 | Msa0173090:CDS |
| CAAGTCCCCAACTATATATG+AGG | 0.533920 | 1_4:+58274412 | Msa0173090:CDS |
| GAAATGGGTTTAGCAGACCT+TGG | 0.538176 | 1_4:-58274291 | None:intergenic |
| GATGGAACTTGAATATGTAA+AGG | 0.538230 | 1_4:+58276330 | Msa0173090:CDS |
| GATGTCGGAGTTTAGAAGCA+TGG | 0.546019 | 1_4:+58276621 | Msa0173090:CDS |
| AAGGACATGAGCACTCCATT+GGG | 0.547496 | 1_4:+58276676 | Msa0173090:CDS |
| AGAGTTCTTCAGAAAAGAAG+AGG | 0.548294 | 1_4:+58274943 | Msa0173090:CDS |
| CATCAGTGATGAGGAAAGGT+TGG | 0.550514 | 1_4:+58276575 | Msa0173090:CDS |
| GCAGGCAAGTTCTTGTTGAA+AGG | 0.551031 | 1_4:+58276524 | Msa0173090:CDS |
| GAAAATAATAGGTCTTGCCT+AGG | 0.551230 | 1_4:+58274579 | Msa0173090:CDS |
| TCTATTTCTGAGGCACATTG+AGG | 0.551487 | 1_4:-58275308 | None:intergenic |
| TTGTGATACCATTGAACCAA+AGG | 0.551569 | 1_4:+58274215 | Msa0173090:CDS |
| CAATGCCGAGGTTCAAAGTA+GGG | 0.554685 | 1_4:+58274635 | Msa0173090:CDS |
| CCAATGCCGAGGTTCAAAGT+AGG | 0.555210 | 1_4:+58274634 | Msa0173090:CDS |
| TATAAAATGTAATGTTACAA+TGG | 0.555302 | 1_4:+58275025 | Msa0173090:CDS |
| CATACAGCATGACAGAAAGC+AGG | 0.556494 | 1_4:+58275069 | Msa0173090:CDS |
| AGGAGCACAATGTCTTCAGT+TGG | 0.557248 | 1_4:+58274432 | Msa0173090:CDS |
| CATGGAAGAAGAGGTGATGG+TGG | 0.557606 | 1_4:+58276639 | Msa0173090:CDS |
| AGGGCTAGTAGCCAGACTCA+TGG | 0.557813 | 1_4:+58274104 | Msa0173090:CDS |
| ATGGAGAAAAGAAGTTACAA+GGG | 0.561403 | 1_4:+58273468 | Msa0173090:CDS |
| GTTTAGAAGCATGGAAGAAG+AGG | 0.561464 | 1_4:+58276630 | Msa0173090:CDS |
| TTACATTTACATCTCCATTG+AGG | 0.562743 | 1_4:+58275105 | Msa0173090:CDS |
| TTTGCTGGTTTGCCTAAGAA+CGG | 0.562748 | 1_4:-58274745 | None:intergenic |
| CTAAGCAAGTGATGGAAACA+AGG | 0.566796 | 1_4:+58275156 | Msa0173090:CDS |
| TCCAACAGATCAAAGAGAGT+TGG | 0.567522 | 1_4:-58276406 | None:intergenic |
| TGATGATGAAGGGTGTGATA+AGG | 0.567960 | 1_4:+58274077 | Msa0173090:CDS |
| ATTAGTAGTGATGATGATGA+AGG | 0.568918 | 1_4:+58274066 | Msa0173090:CDS |
| AGAAGGGTACAAGGAGATGT+CGG | 0.578044 | 1_4:+58276606 | Msa0173090:CDS |
| TCTTAGGCTTCATACTAACA+TGG | 0.580559 | 1_4:-58274350 | None:intergenic |
| TAGTGATAAATTGGGCAGCA+TGG | 0.582742 | 1_4:+58275433 | Msa0173090:CDS |
| AGAACACCGTTCTATTTCTG+AGG | 0.582791 | 1_4:-58275318 | None:intergenic |
| GTCGACTACTAAGCAAGTGA+TGG | 0.583625 | 1_4:+58275148 | Msa0173090:CDS |
| AACCTGCTTAGTGATAAATT+GGG | 0.585492 | 1_4:+58275425 | Msa0173090:CDS |
| TCACTTAGATTCCTTAAACA+TGG | 0.585838 | 1_4:+58274170 | Msa0173090:CDS |
| TCTGTAGATATCAGAACCAA+TGG | 0.586401 | 1_4:+58275688 | Msa0173090:intron |
| TCACTACTTGCAATATCACT+AGG | 0.586974 | 1_4:-58274021 | None:intergenic |
| TTGTTGAAAGGTGCAAAGCA+TGG | 0.588420 | 1_4:+58276536 | Msa0173090:CDS |
| AATGCATGGAATTAAGATGC+AGG | 0.588770 | 1_4:+58276506 | Msa0173090:CDS |
| AGATGTTTCAAACCATGCAA+AGG | 0.589368 | 1_4:+58273662 | Msa0173090:intron |
| TTTCTGAGGCACATTGAGGT+GGG | 0.592064 | 1_4:-58275304 | None:intergenic |
| AAAGCTCTACAAAATCATCA+AGG | 0.594973 | 1_4:+58276305 | Msa0173090:CDS |
| TAAGTGACAACATAATGAAG+TGG | 0.601855 | 1_4:-58274154 | None:intergenic |
| CATATCCCTACTTTGAACCT+CGG | 0.606736 | 1_4:-58274640 | None:intergenic |
| AAGTCAAGCCATCTACCCAA+TGG | 0.609117 | 1_4:-58276691 | None:intergenic |
| AAGGTTGGTTAGCAGAAGAA+GGG | 0.610456 | 1_4:+58276590 | Msa0173090:CDS |
| GTGCTCCTCATATATAGTTG+GGG | 0.610822 | 1_4:-58274417 | None:intergenic |
| CGCAACACGGAACCAAGATG+AGG | 0.611483 | 1_4:+58274508 | Msa0173090:CDS |
| GGAAGACAGATTTAACAGCA+TGG | 0.621284 | 1_4:+58275361 | Msa0173090:CDS |
| GTGACAACATAATGAAGTGG+AGG | 0.623561 | 1_4:-58274151 | None:intergenic |
| GTTCTTAGGCAAACCAGCAA+AGG | 0.627546 | 1_4:+58274747 | Msa0173090:CDS |
| CATGGTATGCAACACATCAA+GGG | 0.628447 | 1_4:+58275379 | Msa0173090:CDS |
| CAAAGCATGGCCTAGATGCA+TGG | 0.630631 | 1_4:+58276549 | Msa0173090:CDS |
| TGACTGTGTAAGTGAATGCA+TGG | 0.630868 | 1_4:+58276492 | Msa0173090:CDS |
| GGTGGATGAGCTTGTTAGCA+AGG | 0.631696 | 1_4:+58276657 | Msa0173090:CDS |
| CAGATAAAGATGGATGACAA+TGG | 0.635008 | 1_4:+58273991 | Msa0173090:intron |
| GATAGTGAAGATAGCACATG+TGG | 0.644975 | 1_4:+58275818 | Msa0173090:CDS |
| TGCAGATCAAGAGTTCTCAA+GGG | 0.654144 | 1_4:-58274468 | None:intergenic |
| GAGTCTGGCTACTAGCCCTG+GGG | 0.654903 | 1_4:-58274100 | None:intergenic |
| AATGTGCCTCAGAAATAGAA+CGG | 0.658499 | 1_4:+58275312 | Msa0173090:CDS |
| AAGGGTGTGATAAGGCCCCA+GGG | 0.660078 | 1_4:+58274085 | Msa0173090:CDS |
| ATACAGCATGACAGAAAGCA+GGG | 0.663032 | 1_4:+58275070 | Msa0173090:CDS |
| TCCATTACATGTAACCTCGT+AGG | 0.664556 | 1_4:-58275245 | None:intergenic |
| CGTGATCAGAATGACGCACG+AGG | 0.670720 | 1_4:+58274966 | Msa0173090:CDS |
| GGCATCTGCTAAGAGCATTG+AGG | 0.678302 | 1_4:+58274389 | Msa0173090:CDS |
| GCATGGTGGCATCAGTGATG+AGG | 0.679121 | 1_4:+58276566 | Msa0173090:CDS |
| TTAGTAGTGATGATGATGAA+GGG | 0.685067 | 1_4:+58274067 | Msa0173090:CDS |
| GTGGCATCAGTGATGAGGAA+AGG | 0.685249 | 1_4:+58276571 | Msa0173090:CDS |
| GGAGAATCGGAGAACTGGTG+TGG | 0.691183 | 1_4:+58276426 | Msa0173090:CDS |
| TGTAACACCATCCAATGCCG+AGG | 0.692381 | 1_4:+58274623 | Msa0173090:CDS |
| AAATTGGAAACAGCGCAACA+CGG | 0.695462 | 1_4:+58274495 | Msa0173090:CDS |
| AGCATGGCCTAGATGCATGG+TGG | 0.715972 | 1_4:+58276552 | Msa0173090:CDS |
| AATTATCATTATCTCCTACG+AGG | 0.717855 | 1_4:+58275231 | Msa0173090:CDS |
| AGGACGATAACAAACAAATG+CGG | 0.767520 | 1_4:+58274840 | Msa0173090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTAATAATAATAAGAAA+GGG | - | chr1_4:58273966-58273985 | None:intergenic | 10.0% |
| !! | AATTGTAATAATAATAAGAA+AGG | - | chr1_4:58273967-58273986 | None:intergenic | 10.0% |
| !! | TATAAAATGTAATGTTACAA+TGG | + | chr1_4:58275025-58275044 | Msa0173090:CDS | 15.0% |
| !!! | TTAATCATTTTCATTTGTTA+TGG | + | chr1_4:58275543-58275562 | Msa0173090:intron | 15.0% |
| !! | AAGAAAAAAATGGTTAAACT+AGG | - | chr1_4:58273755-58273774 | None:intergenic | 20.0% |
| !!! | ATCACTACTAATTGATAATA+AGG | - | chr1_4:58274058-58274077 | None:intergenic | 20.0% |
| !! | ATTCTAACATTGAATCTAAA+AGG | + | chr1_4:58274868-58274887 | Msa0173090:CDS | 20.0% |
| !! | TAAACATAGTATATTATCCT+TGG | + | chr1_4:58275589-58275608 | Msa0173090:intron | 20.0% |
| !!! | GAACAAGCATTAATATTTTA+TGG | - | chr1_4:58276166-58276185 | None:intergenic | 20.0% |
| !!! | TCATATATAACCCTTTTTTT+AGG | + | chr1_4:58276184-58276203 | Msa0173090:intron | 20.0% |
| !!! | TCTTTCTTTGTTGATGATAA+TGG | + | chr1_4:58273449-58273468 | Msa0173090:exon | 25.0% |
| !!! | TTGTGATAAAAGTGTTTCTT+TGG | - | chr1_4:58273531-58273550 | None:intergenic | 25.0% |
| ! | AAATAATTACCAGGTAAGTT+AGG | - | chr1_4:58273555-58273574 | None:intergenic | 25.0% |
| ! | AAAGACTAGAAATAATTACC+AGG | - | chr1_4:58273564-58273583 | None:intergenic | 25.0% |
| ! | GAGCAAAAAATATTCAGAAT+AGG | - | chr1_4:58273632-58273651 | None:intergenic | 25.0% |
| ! | TTAAACTAGGAAACTAAGAA+AGG | - | chr1_4:58273742-58273761 | None:intergenic | 25.0% |
| ! | GTCTTAACAAAATGTCATTA+GGG | - | chr1_4:58273820-58273839 | None:intergenic | 25.0% |
| ! | TGTCTTAACAAAATGTCATT+AGG | - | chr1_4:58273821-58273840 | None:intergenic | 25.0% |
| !! | CTACATAAAACTTCCTTTTT+AGG | + | chr1_4:58273902-58273921 | Msa0173090:intron | 25.0% |
| ! | ACAATTGTTTCAGATAAAGA+TGG | + | chr1_4:58273981-58274000 | Msa0173090:intron | 25.0% |
| ! | TTGTTATGAGTAACTGAAAT+GGG | - | chr1_4:58274309-58274328 | None:intergenic | 25.0% |
| !! | TTTGTTATGAGTAACTGAAA+TGG | - | chr1_4:58274310-58274329 | None:intergenic | 25.0% |
| ! | TGTTGAATTTGAATGGAAAT+AGG | + | chr1_4:58274661-58274680 | Msa0173090:CDS | 25.0% |
| ! | TCAAACCAGAAAAATTGTAA+TGG | + | chr1_4:58274711-58274730 | Msa0173090:CDS | 25.0% |
| ! | AAAAGAATCAACATCAATTC+TGG | - | chr1_4:58275183-58275202 | None:intergenic | 25.0% |
| !! | GGAGATAATGATAATTTTTC+AGG | - | chr1_4:58275227-58275246 | None:intergenic | 25.0% |
| !!! | TGTTGGTTTTGAATCTATTT+TGG | + | chr1_4:58275340-58275359 | Msa0173090:CDS | 25.0% |
| ! | TCAAATTATGATACAATGCT+TGG | + | chr1_4:58275473-58275492 | Msa0173090:CDS | 25.0% |
| ! | TGTAACAACAAAAATGAAAG+CGG | + | chr1_4:58275722-58275741 | Msa0173090:CDS | 25.0% |
| ! | ACTTCAAAGTTAAGCAAAAT+TGG | - | chr1_4:58275993-58276012 | None:intergenic | 25.0% |
| !!! | TATATAACCCTTTTTTTAGG+AGG | + | chr1_4:58276187-58276206 | Msa0173090:intron | 25.0% |
| ! | AACCAATTCATCTTATATTC+AGG | - | chr1_4:58276280-58276299 | None:intergenic | 25.0% |
| ! | TACCTATTTGATAGATGAAT+TGG | + | chr1_4:58276762-58276781 | Msa0173090:CDS | 25.0% |
| ! | AACCAATTCATCTATCAAAT+AGG | - | chr1_4:58276767-58276786 | None:intergenic | 25.0% |
| AATGGAGAAAAGAAGTTACA+AGG | + | chr1_4:58273467-58273486 | Msa0173090:CDS | 30.0% | |
| ATGGAGAAAAGAAGTTACAA+GGG | + | chr1_4:58273468-58273487 | Msa0173090:CDS | 30.0% | |
| AAAGGTTGAAAAAATCACAC+TGG | - | chr1_4:58273724-58273743 | None:intergenic | 30.0% | |
| ! | ACTTGTTAAGAAGCCTAAAA+AGG | - | chr1_4:58273918-58273937 | None:intergenic | 30.0% |
| ! | ATTAGTAGTGATGATGATGA+AGG | + | chr1_4:58274066-58274085 | Msa0173090:CDS | 30.0% |
| ! | TTAGTAGTGATGATGATGAA+GGG | + | chr1_4:58274067-58274086 | Msa0173090:CDS | 30.0% |
| TAAGTGACAACATAATGAAG+TGG | - | chr1_4:58274157-58274176 | None:intergenic | 30.0% | |
| TCACTTAGATTCCTTAAACA+TGG | + | chr1_4:58274170-58274189 | Msa0173090:CDS | 30.0% | |
| AAAATGAAACTTTGTCTCCA+AGG | + | chr1_4:58274274-58274293 | Msa0173090:CDS | 30.0% | |
| ! | ATACTAACATGGCTTTTGAT+AGG | - | chr1_4:58274342-58274361 | None:intergenic | 30.0% |
| TCTAAATATGCTGCATTCTT+AGG | - | chr1_4:58274369-58274388 | None:intergenic | 30.0% | |
| TAAGAATGCAGCATATTTAG+AGG | + | chr1_4:58274368-58274387 | Msa0173090:CDS | 30.0% | |
| CGAGAGATTCAGAAAATAAT+AGG | + | chr1_4:58274568-58274587 | Msa0173090:CDS | 30.0% | |
| AGGGATATGTTGAATTTGAA+TGG | + | chr1_4:58274654-58274673 | Msa0173090:CDS | 30.0% | |
| !! | ACAAGTTTGTGTTGACTTAT+TGG | - | chr1_4:58274796-58274815 | None:intergenic | 30.0% |
| AAGAGTAACTGATAAGCAAA+AGG | + | chr1_4:58274899-58274918 | Msa0173090:CDS | 30.0% | |
| !! | TTCTGAAGAACTCTTTCTTT+TGG | - | chr1_4:58274937-58274956 | None:intergenic | 30.0% |
| TTACATTTACATCTCCATTG+AGG | + | chr1_4:58275105-58275124 | Msa0173090:CDS | 30.0% | |
| ! | TGAGATATGTTTTTCCTCAA+TGG | - | chr1_4:58275122-58275141 | None:intergenic | 30.0% |
| ! | TTCTTTTCATCACGTTGATA+AGG | + | chr1_4:58275196-58275215 | Msa0173090:CDS | 30.0% |
| AATTATCATTATCTCCTACG+AGG | + | chr1_4:58275231-58275250 | Msa0173090:CDS | 30.0% | |
| AACCTGCTTAGTGATAAATT+GGG | + | chr1_4:58275425-58275444 | Msa0173090:CDS | 30.0% | |
| ATATCTACAGAAGAGAAGAA+TGG | - | chr1_4:58275679-58275698 | None:intergenic | 30.0% | |
| !!! | TCATTTTTGTTGTTACAGCT+TGG | - | chr1_4:58275719-58275738 | None:intergenic | 30.0% |
| !!! | AAGTTACTTTTGCTGATGAA+AGG | - | chr1_4:58275797-58275816 | None:intergenic | 30.0% |
| TTTCATCAGCAAAAGTAACT+TGG | + | chr1_4:58275796-58275815 | Msa0173090:CDS | 30.0% | |
| GCAAAATTATTCTTATCAGC+TGG | + | chr1_4:58275967-58275986 | Msa0173090:intron | 30.0% | |
| ATATACTTCTTCATCTTGCA+TGG | - | chr1_4:58276230-58276249 | None:intergenic | 30.0% | |
| ! | ATGCAAGATGAAGAAGTATA+TGG | + | chr1_4:58276229-58276248 | Msa0173090:CDS | 30.0% |
| CACCTGAATATAAGATGAAT+TGG | + | chr1_4:58276275-58276294 | Msa0173090:CDS | 30.0% | |
| AAAGCTCTACAAAATCATCA+AGG | + | chr1_4:58276305-58276324 | Msa0173090:CDS | 30.0% | |
| TACAAAATCATCAAGGATGA+TGG | + | chr1_4:58276312-58276331 | Msa0173090:CDS | 30.0% | |
| GATGGAACTTGAATATGTAA+AGG | + | chr1_4:58276330-58276349 | Msa0173090:CDS | 30.0% | |
| AAGAATACTCTAAGCTCAAA+AGG | + | chr1_4:58276458-58276477 | Msa0173090:CDS | 30.0% | |
| !! | AAATTCCAAGCCATTTTCAA+AGG | - | chr1_4:58276728-58276747 | None:intergenic | 30.0% |
| ! | ATGAATTGGTTTCTGATTTG+TGG | + | chr1_4:58276776-58276795 | Msa0173090:CDS | 30.0% |
| TATCACAATCCTAACTTACC+TGG | + | chr1_4:58273543-58273562 | Msa0173090:CDS | 35.0% | |
| AGATGTTTCAAACCATGCAA+AGG | + | chr1_4:58273662-58273681 | Msa0173090:intron | 35.0% | |
| GATGTTTCAAACCATGCAAA+GGG | + | chr1_4:58273663-58273682 | Msa0173090:intron | 35.0% | |
| TTTCAATGTTTCCCTTTGCA+TGG | - | chr1_4:58273677-58273696 | None:intergenic | 35.0% | |
| TCGTGCTAACAAATTCTGTA+AGG | - | chr1_4:58273943-58273962 | None:intergenic | 35.0% | |
| CAGATAAAGATGGATGACAA+TGG | + | chr1_4:58273991-58274010 | Msa0173090:intron | 35.0% | |
| TCACTACTTGCAATATCACT+AGG | - | chr1_4:58274024-58274043 | None:intergenic | 35.0% | |
| TGACTTAAGAGCCATGTTTA+AGG | - | chr1_4:58274184-58274203 | None:intergenic | 35.0% | |
| TTGTGATACCATTGAACCAA+AGG | + | chr1_4:58274215-58274234 | Msa0173090:CDS | 35.0% | |
| ! | TTTATGAGCCTTTGGTTCAA+TGG | - | chr1_4:58274226-58274245 | None:intergenic | 35.0% |
| TGAACCAAAGGCTCATAAAA+TGG | + | chr1_4:58274227-58274246 | Msa0173090:CDS | 35.0% | |
| GAACCAAAGGCTCATAAAAT+GGG | + | chr1_4:58274228-58274247 | Msa0173090:CDS | 35.0% | |
| ! | TTTCCCATTTTATGAGCCTT+TGG | - | chr1_4:58274234-58274253 | None:intergenic | 35.0% |
| TCTTAGGCTTCATACTAACA+TGG | - | chr1_4:58274353-58274372 | None:intergenic | 35.0% | |
| TGTGCTCCTCATATATAGTT+GGG | - | chr1_4:58274421-58274440 | None:intergenic | 35.0% | |
| TTGTGCTCCTCATATATAGT+TGG | - | chr1_4:58274422-58274441 | None:intergenic | 35.0% | |
| TCTTGATCTGCAAGAGAAAT+TGG | + | chr1_4:58274479-58274498 | Msa0173090:CDS | 35.0% | |
| !! | ATATAACTTGCTCCTCATCT+TGG | - | chr1_4:58274523-58274542 | None:intergenic | 35.0% |
| AAGTCTACTTCAACCTTCAA+AGG | + | chr1_4:58274543-58274562 | Msa0173090:CDS | 35.0% | |
| GAAAATAATAGGTCTTGCCT+AGG | + | chr1_4:58274579-58274598 | Msa0173090:CDS | 35.0% | |
| ! | AAGCAGATTTTCCTTTACCT+AGG | - | chr1_4:58274599-58274618 | None:intergenic | 35.0% |
| ! | TCTGGCCATTACAATTTTTC+TGG | - | chr1_4:58274719-58274738 | None:intergenic | 35.0% |
| ! | TGAAGTTGATTTACCTTTGC+TGG | - | chr1_4:58274763-58274782 | None:intergenic | 35.0% |
| AGGACGATAACAAACAAATG+CGG | + | chr1_4:58274840-58274859 | Msa0173090:CDS | 35.0% | |
| AGAGTTCTTCAGAAAAGAAG+AGG | + | chr1_4:58274943-58274962 | Msa0173090:CDS | 35.0% | |
| AATGTGCCTCAGAAATAGAA+CGG | + | chr1_4:58275312-58275331 | Msa0173090:CDS | 35.0% | |
| GAACCTGCTTAGTGATAAAT+TGG | + | chr1_4:58275424-58275443 | Msa0173090:CDS | 35.0% | |
| TATTATCCTTGGCAACTTTC+TGG | + | chr1_4:58275600-58275619 | Msa0173090:intron | 35.0% | |
| ATCAGTTAGTCATAGAGATG+AGG | + | chr1_4:58275624-58275643 | Msa0173090:intron | 35.0% | |
| TCTGTAGATATCAGAACCAA+TGG | + | chr1_4:58275688-58275707 | Msa0173090:intron | 35.0% | |
| ! | CAGAAGTGTAAAGACAATCA+AGG | - | chr1_4:58275856-58275875 | None:intergenic | 35.0% |
| TCTCAAGGTTATTCAAAGCA+TGG | - | chr1_4:58275941-58275960 | None:intergenic | 35.0% | |
| ! | TAATTTTGCAGCATGTCTCA+AGG | - | chr1_4:58275956-58275975 | None:intergenic | 35.0% |
| CGTCATTATAAAACATGCAG+GGG | - | chr1_4:58276057-58276076 | None:intergenic | 35.0% | |
| GCGTCATTATAAAACATGCA+GGG | - | chr1_4:58276058-58276077 | None:intergenic | 35.0% | |
| AGCGTCATTATAAAACATGC+AGG | - | chr1_4:58276059-58276078 | None:intergenic | 35.0% | |
| ACTCAGCAATGTAGAATTGA+TGG | + | chr1_4:58276357-58276376 | Msa0173090:CDS | 35.0% | |
| TCTTTGATCTGTTGGAGAAT+CGG | + | chr1_4:58276413-58276432 | Msa0173090:CDS | 35.0% | |
| AATGCATGGAATTAAGATGC+AGG | + | chr1_4:58276506-58276525 | Msa0173090:CDS | 35.0% | |
| ! | GACATTGAAGCCTTTGAAAA+TGG | + | chr1_4:58276715-58276734 | Msa0173090:CDS | 35.0% |
| GCTTCCTTAGCTTCTTTGAT+CGG | + | chr1_4:58273493-58273512 | Msa0173090:CDS | 40.0% | |
| CATTCCGATCAAAGAAGCTA+AGG | - | chr1_4:58273500-58273519 | None:intergenic | 40.0% | |
| TGAAATCATGCCAATGTCAC+AGG | + | chr1_4:58273692-58273711 | Msa0173090:CDS | 40.0% | |
| ! | TGATGATGAAGGGTGTGATA+AGG | + | chr1_4:58274077-58274096 | Msa0173090:CDS | 40.0% |
| GTGACAACATAATGAAGTGG+AGG | - | chr1_4:58274154-58274173 | None:intergenic | 40.0% | |
| CAAGTCCCCAACTATATATG+AGG | + | chr1_4:58274412-58274431 | Msa0173090:CDS | 40.0% | |
| GTGCTCCTCATATATAGTTG+GGG | - | chr1_4:58274420-58274439 | None:intergenic | 40.0% | |
| TGCAGATCAAGAGTTCTCAA+GGG | - | chr1_4:58274471-58274490 | None:intergenic | 40.0% | |
| TTGCAGATCAAGAGTTCTCA+AGG | - | chr1_4:58274472-58274491 | None:intergenic | 40.0% | |
| AAATTGGAAACAGCGCAACA+CGG | + | chr1_4:58274495-58274514 | Msa0173090:CDS | 40.0% | |
| TGAATCTCTCGAACCTTTGA+AGG | - | chr1_4:58274559-58274578 | None:intergenic | 40.0% | |
| AATAGGTCTTGCCTAGGTAA+AGG | + | chr1_4:58274585-58274604 | Msa0173090:CDS | 40.0% | |
| CATATCCCTACTTTGAACCT+CGG | - | chr1_4:58274643-58274662 | None:intergenic | 40.0% | |
| !! | TTTGCTGGTTTGCCTAAGAA+CGG | - | chr1_4:58274748-58274767 | None:intergenic | 40.0% |
| CTTATCAGTTACTCTTGTGC+TGG | - | chr1_4:58274895-58274914 | None:intergenic | 40.0% | |
| ATACAGCATGACAGAAAGCA+GGG | + | chr1_4:58275070-58275089 | Msa0173090:CDS | 40.0% | |
| ! | CTAAGCAAGTGATGGAAACA+AGG | + | chr1_4:58275156-58275175 | Msa0173090:CDS | 40.0% |
| TCCTACGAGGTTACATGTAA+TGG | + | chr1_4:58275244-58275263 | Msa0173090:CDS | 40.0% | |
| TCCATTACATGTAACCTCGT+AGG | - | chr1_4:58275248-58275267 | None:intergenic | 40.0% | |
| !! | TCTATTTCTGAGGCACATTG+AGG | - | chr1_4:58275311-58275330 | None:intergenic | 40.0% |
| !! | AGAACACCGTTCTATTTCTG+AGG | - | chr1_4:58275321-58275340 | None:intergenic | 40.0% |
| GAAATAGAACGGTGTTCTGT+TGG | + | chr1_4:58275323-58275342 | Msa0173090:CDS | 40.0% | |
| GGAAGACAGATTTAACAGCA+TGG | + | chr1_4:58275361-58275380 | Msa0173090:CDS | 40.0% | |
| CATGGTATGCAACACATCAA+GGG | + | chr1_4:58275379-58275398 | Msa0173090:CDS | 40.0% | |
| TGCCCAATTTATCACTAAGC+AGG | - | chr1_4:58275430-58275449 | None:intergenic | 40.0% | |
| TAGTGATAAATTGGGCAGCA+TGG | + | chr1_4:58275433-58275452 | Msa0173090:CDS | 40.0% | |
| AGTTAGTCATAGAGATGAGG+AGG | + | chr1_4:58275627-58275646 | Msa0173090:intron | 40.0% | |
| TTACAGCTTGGATCTTCCAT+TGG | - | chr1_4:58275707-58275726 | None:intergenic | 40.0% | |
| GATAGTGAAGATAGCACATG+TGG | + | chr1_4:58275818-58275837 | Msa0173090:CDS | 40.0% | |
| GGATGTATGTATTTGTGCAG+AGG | - | chr1_4:58276145-58276164 | None:intergenic | 40.0% | |
| TCTGCTGCCTCCTAAAAAAA+GGG | - | chr1_4:58276197-58276216 | None:intergenic | 40.0% | |
| TCCAACAGATCAAAGAGAGT+TGG | - | chr1_4:58276409-58276428 | None:intergenic | 40.0% | |
| TGACTGTGTAAGTGAATGCA+TGG | + | chr1_4:58276492-58276511 | Msa0173090:CDS | 40.0% | |
| ! | TTGTTGAAAGGTGCAAAGCA+TGG | + | chr1_4:58276536-58276555 | Msa0173090:CDS | 40.0% |
| ! | AAAGGTTGGTTAGCAGAAGA+AGG | + | chr1_4:58276589-58276608 | Msa0173090:CDS | 40.0% |
| ! | AAGGTTGGTTAGCAGAAGAA+GGG | + | chr1_4:58276590-58276609 | Msa0173090:CDS | 40.0% |
| ! | GTTTAGAAGCATGGAAGAAG+AGG | + | chr1_4:58276630-58276649 | Msa0173090:CDS | 40.0% |
| ! | TGAAGCCTTTGAAAATGGCT+TGG | + | chr1_4:58276720-58276739 | Msa0173090:CDS | 40.0% |
| CTGGTGTTTACCTGTGACAT+TGG | - | chr1_4:58273705-58273724 | None:intergenic | 45.0% | |
| TGAATCCAAACCCATGAGTC+TGG | - | chr1_4:58274118-58274137 | None:intergenic | 45.0% | |
| ! | GAAATGGGTTTAGCAGACCT+TGG | - | chr1_4:58274294-58274313 | None:intergenic | 45.0% |
| ! | AGGAGCACAATGTCTTCAGT+TGG | + | chr1_4:58274432-58274451 | Msa0173090:CDS | 45.0% |
| CAATGCCGAGGTTCAAAGTA+GGG | + | chr1_4:58274635-58274654 | Msa0173090:CDS | 45.0% | |
| GTTCTTAGGCAAACCAGCAA+AGG | + | chr1_4:58274747-58274766 | Msa0173090:CDS | 45.0% | |
| CATACAGCATGACAGAAAGC+AGG | + | chr1_4:58275069-58275088 | Msa0173090:CDS | 45.0% | |
| GTCGACTACTAAGCAAGTGA+TGG | + | chr1_4:58275148-58275167 | Msa0173090:CDS | 45.0% | |
| !! | TTTCTGAGGCACATTGAGGT+GGG | - | chr1_4:58275307-58275326 | None:intergenic | 45.0% |
| !! | ATTTCTGAGGCACATTGAGG+TGG | - | chr1_4:58275308-58275327 | None:intergenic | 45.0% |
| GCATGGTATGCAACACATCA+AGG | + | chr1_4:58275378-58275397 | Msa0173090:CDS | 45.0% | |
| TGGCATGAATCAGCAACTTC+AGG | + | chr1_4:58275493-58275512 | Msa0173090:CDS | 45.0% | |
| CTCTGCTGCCTCCTAAAAAA+AGG | - | chr1_4:58276198-58276217 | None:intergenic | 45.0% | |
| GCCAACTCTCTTTGATCTGT+TGG | + | chr1_4:58276405-58276424 | Msa0173090:CDS | 45.0% | |
| GCAGGCAAGTTCTTGTTGAA+AGG | + | chr1_4:58276524-58276543 | Msa0173090:CDS | 45.0% | |
| CATCAGTGATGAGGAAAGGT+TGG | + | chr1_4:58276575-58276594 | Msa0173090:CDS | 45.0% | |
| ! | GTTAGCAGAAGAAGGGTACA+AGG | + | chr1_4:58276597-58276616 | Msa0173090:CDS | 45.0% |
| ! | AGAAGGGTACAAGGAGATGT+CGG | + | chr1_4:58276606-58276625 | Msa0173090:CDS | 45.0% |
| GATGTCGGAGTTTAGAAGCA+TGG | + | chr1_4:58276621-58276640 | Msa0173090:CDS | 45.0% | |
| AAGCATGGAAGAAGAGGTGA+TGG | + | chr1_4:58276636-58276655 | Msa0173090:CDS | 45.0% | |
| AAGGACATGAGCACTCCATT+GGG | + | chr1_4:58276676-58276695 | Msa0173090:CDS | 45.0% | |
| AAGTCAAGCCATCTACCCAA+TGG | - | chr1_4:58276694-58276713 | None:intergenic | 45.0% | |
| !! | AAAAAATTAAAAGAAAAAAA+TGG | - | chr1_4:58273765-58273784 | None:intergenic | 5.0% |
| !!! | TTTTTTCTTTTAATTTTTTA+TGG | + | chr1_4:58273766-58273785 | Msa0173090:intron | 5.0% |
| AGTAGCCAGACTCATGGGTT+TGG | + | chr1_4:58274110-58274129 | Msa0173090:CDS | 50.0% | |
| !! | GGCATCTGCTAAGAGCATTG+AGG | + | chr1_4:58274389-58274408 | Msa0173090:CDS | 50.0% |
| TGTAACACCATCCAATGCCG+AGG | + | chr1_4:58274623-58274642 | Msa0173090:CDS | 50.0% | |
| ! | CTTTGAACCTCGGCATTGGA+TGG | - | chr1_4:58274633-58274652 | None:intergenic | 50.0% |
| CCTACTTTGAACCTCGGCAT+TGG | - | chr1_4:58274637-58274656 | None:intergenic | 50.0% | |
| CCAATGCCGAGGTTCAAAGT+AGG | + | chr1_4:58274634-58274653 | Msa0173090:CDS | 50.0% | |
| !! | GTTTGTTATCGTCCTAGCGC+TGG | - | chr1_4:58274835-58274854 | None:intergenic | 50.0% |
| CTGATGCCAGAAAGTTGCCA+AGG | - | chr1_4:58275609-58275628 | None:intergenic | 50.0% | |
| CTGTTGGAGAATCGGAGAAC+TGG | + | chr1_4:58276421-58276440 | Msa0173090:CDS | 50.0% | |
| CAAAGCATGGCCTAGATGCA+TGG | + | chr1_4:58276549-58276568 | Msa0173090:CDS | 50.0% | |
| ACTGATGCCACCATGCATCT+AGG | - | chr1_4:58276562-58276581 | None:intergenic | 50.0% | |
| GTGGCATCAGTGATGAGGAA+AGG | + | chr1_4:58276571-58276590 | Msa0173090:CDS | 50.0% | |
| ! | CATGGAAGAAGAGGTGATGG+TGG | + | chr1_4:58276639-58276658 | Msa0173090:CDS | 50.0% |
| !! | GGTGGATGAGCTTGTTAGCA+AGG | + | chr1_4:58276657-58276676 | Msa0173090:CDS | 50.0% |
| CAAGGACATGAGCACTCCAT+TGG | + | chr1_4:58276675-58276694 | Msa0173090:CDS | 50.0% | |
| TGAGCACTCCATTGGGTAGA+TGG | + | chr1_4:58276683-58276702 | Msa0173090:CDS | 50.0% | |
| ! | AAGGGTGTGATAAGGCCCCA+GGG | + | chr1_4:58274085-58274104 | Msa0173090:CDS | 55.0% |
| TGAGTCTGGCTACTAGCCCT+GGG | - | chr1_4:58274104-58274123 | None:intergenic | 55.0% | |
| ATGAGTCTGGCTACTAGCCC+TGG | - | chr1_4:58274105-58274124 | None:intergenic | 55.0% | |
| ! | AGGGCTAGTAGCCAGACTCA+TGG | + | chr1_4:58274104-58274123 | Msa0173090:CDS | 55.0% |
| ! | GGGCTAGTAGCCAGACTCAT+GGG | + | chr1_4:58274105-58274124 | Msa0173090:CDS | 55.0% |
| CGCAACACGGAACCAAGATG+AGG | + | chr1_4:58274508-58274527 | Msa0173090:CDS | 55.0% | |
| GCCAGAACAGCACCGTTCTT+AGG | + | chr1_4:58274733-58274752 | Msa0173090:CDS | 55.0% | |
| !! | GCCTAAGAACGGTGCTGTTC+TGG | - | chr1_4:58274737-58274756 | None:intergenic | 55.0% |
| CAGAAAGTTCGACCAGCGCT+AGG | + | chr1_4:58274820-58274839 | Msa0173090:CDS | 55.0% | |
| CGTGATCAGAATGACGCACG+AGG | + | chr1_4:58274966-58274985 | Msa0173090:CDS | 55.0% | |
| GGAGAATCGGAGAACTGGTG+TGG | + | chr1_4:58276426-58276445 | Msa0173090:CDS | 55.0% | |
| AGCATGGCCTAGATGCATGG+TGG | + | chr1_4:58276552-58276571 | Msa0173090:CDS | 55.0% | |
| GCATGGTGGCATCAGTGATG+AGG | + | chr1_4:58276566-58276585 | Msa0173090:CDS | 55.0% | |
| ! | GAAGGGTGTGATAAGGCCCC+AGG | + | chr1_4:58274084-58274103 | Msa0173090:CDS | 60.0% |
| GAGTCTGGCTACTAGCCCTG+GGG | - | chr1_4:58274103-58274122 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 58273417 | 58276807 | 58273417 | ID=Msa0173090;Name=Msa0173090 |
| chr1_4 | mRNA | 58273417 | 58276807 | 58273417 | ID=Msa0173090-mRNA-1;Parent=Msa0173090;Name=Msa0173090-mRNA-1;_AED=0.01;_eAED=0.01;_QI=45|0.5|0.4|1|1|1|5|0|806 |
| chr1_4 | exon | 58273417 | 58273564 | 58273417 | ID=Msa0173090-mRNA-1:exon:17926;Parent=Msa0173090-mRNA-1 |
| chr1_4 | exon | 58273664 | 58273713 | 58273664 | ID=Msa0173090-mRNA-1:exon:17927;Parent=Msa0173090-mRNA-1 |
| chr1_4 | exon | 58273994 | 58275514 | 58273994 | ID=Msa0173090-mRNA-1:exon:17928;Parent=Msa0173090-mRNA-1 |
| chr1_4 | exon | 58275695 | 58275839 | 58275695 | ID=Msa0173090-mRNA-1:exon:17929;Parent=Msa0173090-mRNA-1 |
| chr1_4 | exon | 58276206 | 58276807 | 58276206 | ID=Msa0173090-mRNA-1:exon:17930;Parent=Msa0173090-mRNA-1 |
| chr1_4 | five_prime_UTR | 58273417 | 58273461 | 58273417 | ID=Msa0173090-mRNA-1:five_prime_utr;Parent=Msa0173090-mRNA-1 |
| chr1_4 | CDS | 58273462 | 58273564 | 58273462 | ID=Msa0173090-mRNA-1:cds;Parent=Msa0173090-mRNA-1 |
| chr1_4 | CDS | 58273664 | 58273713 | 58273664 | ID=Msa0173090-mRNA-1:cds;Parent=Msa0173090-mRNA-1 |
| chr1_4 | CDS | 58273994 | 58275514 | 58273994 | ID=Msa0173090-mRNA-1:cds;Parent=Msa0173090-mRNA-1 |
| chr1_4 | CDS | 58275695 | 58275839 | 58275695 | ID=Msa0173090-mRNA-1:cds;Parent=Msa0173090-mRNA-1 |
| chr1_4 | CDS | 58276206 | 58276807 | 58276206 | ID=Msa0173090-mRNA-1:cds;Parent=Msa0173090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
