Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022640 | Msa0032500 | 0.802076 | 6.660885e-49 | -8.615850e-47 |
| Msa0032500 | Msa0131730 | 0.889590 | 2.113284e-73 | -8.615850e-47 |
| Msa0032500 | Msa0161680 | 0.802933 | 4.434962e-49 | -8.615850e-47 |
| Msa0032500 | Msa0173090 | 0.948016 | 2.172596e-106 | -8.615850e-47 |
| Msa0032500 | Msa0235550 | 0.803353 | 3.630281e-49 | -8.615850e-47 |
| Msa0032500 | Msa0273570 | 0.809898 | 1.506793e-50 | -8.615850e-47 |
| Msa0032500 | Msa0274520 | 0.800915 | 1.151671e-48 | -8.615850e-47 |
| Msa0032500 | Msa0371570 | 0.808237 | 3.418223e-50 | -8.615850e-47 |
| Msa0032500 | Msa0465930 | 0.808834 | 2.548605e-50 | -8.615850e-47 |
| Msa0032500 | Msa0465970 | 0.809496 | 1.839042e-50 | -8.615850e-47 |
| Msa0032500 | Msa0531430 | 0.810700 | 1.011738e-50 | -8.615850e-47 |
| Msa0032500 | Msa0611380 | 0.813629 | 2.324096e-51 | -8.615850e-47 |
| Msa0032500 | Msa0618290 | 0.812744 | 3.633858e-51 | -8.615850e-47 |
| Msa0032500 | Msa0666030 | 0.824163 | 9.365716e-54 | -8.615850e-47 |
| Msa0032500 | Msa0717260 | 0.801066 | 1.073088e-48 | -8.615850e-47 |
| Msa0032500 | Msa0773610 | 0.815847 | 7.493448e-52 | -8.615850e-47 |
| Msa0032500 | Msa0870620 | 0.809781 | 1.597139e-50 | -8.615850e-47 |
| Msa0032500 | Msa0880710 | 0.800735 | 1.253413e-48 | -8.615850e-47 |
| Msa0032500 | Msa0898370 | 0.808037 | 3.770670e-50 | -8.615850e-47 |
| Msa0032500 | Msa1020720 | 0.823551 | 1.303049e-53 | -8.615850e-47 |
| Msa0032500 | Msa1139410 | 0.805937 | 1.048675e-49 | -8.615850e-47 |
| Msa0032500 | Msa1218480 | 0.807523 | 4.849224e-50 | -8.615850e-47 |
| Msa0032500 | Msa1287560 | 0.810149 | 1.330798e-50 | -8.615850e-47 |
| Msa0032500 | Msa1289280 | 0.807358 | 5.255988e-50 | -8.615850e-47 |
| Msa0032500 | Msa1297090 | 0.804989 | 1.657508e-49 | -8.615850e-47 |
| Msa0032500 | Msa1324780 | 0.807137 | 5.855183e-50 | -8.615850e-47 |
| Msa0032500 | Msa1440340 | 0.808707 | 2.713576e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032500 | MtrunA17_Chr1g0192581 | 86.684 | 766 | 87 | 5 | 47 | 806 | 1 | 757 | 0.0 | 1300 |
| Msa0032500 | MtrunA17_Chr7g0271711 | 47.624 | 926 | 347 | 27 | 3 | 806 | 1 | 910 | 0.0 | 669 |
| Msa0032500 | MtrunA17_Chr2g0294831 | 29.070 | 946 | 502 | 35 | 1 | 803 | 1 | 920 | 3.03e-72 | 254 |
| Msa0032500 | MtrunA17_Chr7g0250831 | 41.071 | 112 | 57 | 3 | 695 | 803 | 829 | 934 | 3.17e-15 | 80.1 |
| Msa0032500 | MtrunA17_Chr6g0457761 | 30.556 | 180 | 102 | 9 | 637 | 803 | 708 | 877 | 2.08e-13 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032500 | AT3G58650.1 | 29.234 | 862 | 495 | 30 | 2 | 803 | 3 | 809 | 5.29e-68 | 241 |
| Msa0032500 | AT5G26910.3 | 28.179 | 873 | 505 | 29 | 2 | 803 | 3 | 824 | 2.34e-60 | 220 |
| Msa0032500 | AT5G26910.4 | 28.261 | 874 | 504 | 30 | 2 | 803 | 3 | 825 | 2.57e-60 | 220 |
| Msa0032500 | AT5G26910.1 | 28.261 | 874 | 504 | 30 | 2 | 803 | 3 | 825 | 2.57e-60 | 220 |
| Msa0032500 | AT5G26910.2 | 29.600 | 500 | 286 | 17 | 2 | 442 | 3 | 495 | 3.38e-29 | 124 |
| Msa0032500 | AT3G05750.4 | 30.134 | 448 | 249 | 16 | 50 | 441 | 52 | 491 | 8.12e-22 | 101 |
| Msa0032500 | AT3G05750.4 | 35.849 | 159 | 90 | 3 | 650 | 803 | 638 | 789 | 4.50e-15 | 80.1 |
| Msa0032500 | AT3G05750.1 | 30.134 | 448 | 249 | 16 | 50 | 441 | 60 | 499 | 1.05e-21 | 101 |
| Msa0032500 | AT3G05750.1 | 35.849 | 159 | 90 | 3 | 650 | 803 | 646 | 797 | 4.90e-15 | 80.1 |
| Msa0032500 | AT3G05750.3 | 30.411 | 365 | 213 | 14 | 111 | 441 | 39 | 396 | 1.70e-18 | 90.9 |
| Msa0032500 | AT3G05750.3 | 35.849 | 159 | 90 | 3 | 650 | 803 | 543 | 694 | 4.07e-15 | 80.1 |
| Msa0032500 | AT3G05750.2 | 30.411 | 365 | 213 | 14 | 111 | 441 | 39 | 396 | 1.70e-18 | 90.9 |
| Msa0032500 | AT3G05750.2 | 35.849 | 159 | 90 | 3 | 650 | 803 | 543 | 694 | 4.07e-15 | 80.1 |
Find 153 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACCTGCTTAGTGATAAAT+TGG | 0.140845 | 1_1:-59673518 | Msa0032500:CDS |
| TCTAAATATGCTGCATTCTT+AGG | 0.165931 | 1_1:+59674576 | None:intergenic |
| GACATTGAAGCCTTTGAAAA+TGG | 0.201384 | 1_1:-59672220 | Msa0032500:CDS |
| TGACTTAAGAGCCATGTTTA+AGG | 0.207080 | 1_1:+59674761 | None:intergenic |
| TCTTGATCTGCAAGAGAAAT+TGG | 0.213960 | 1_1:-59674463 | Msa0032500:CDS |
| ACAAGTTTGTGTTGACTTAT+TGG | 0.216757 | 1_1:+59674149 | None:intergenic |
| TGAAGTTGATTTACCTTTGC+TGG | 0.221523 | 1_1:+59674182 | None:intergenic |
| TCTTTCTTTGTTGATGATAA+TGG | 0.224980 | 1_1:-59675493 | Msa0032500:exon |
| TGAACCAAAGGCTCATAAAA+TGG | 0.230963 | 1_1:-59674715 | Msa0032500:CDS |
| ATCACTACTAATTGATAATA+AGG | 0.265224 | 1_1:+59674887 | None:intergenic |
| GCCTAAGAACGGTGCTGTTC+TGG | 0.287283 | 1_1:+59674208 | None:intergenic |
| TTCTGAAGAACTCTTTCTTT+TGG | 0.289753 | 1_1:+59674008 | None:intergenic |
| TGTTGAATTTGAATGGAAAT+AGG | 0.295796 | 1_1:-59674281 | Msa0032500:CDS |
| TTGTGATAAAAGTGTTTCTT+TGG | 0.305866 | 1_1:+59675414 | None:intergenic |
| TACCTATTTGATAGATGAAT+TGG | 0.313922 | 1_1:-59672173 | Msa0032500:CDS |
| AACCAATTCATCTTATATTC+AGG | 0.323610 | 1_1:+59672658 | None:intergenic |
| ATGAGTCTGGCTACTAGCCC+TGG | 0.328479 | 1_1:+59674840 | None:intergenic |
| AAAAGAATCAACATCAATTC+TGG | 0.330223 | 1_1:+59673762 | None:intergenic |
| CGAGAGATTCAGAAAATAAT+AGG | 0.330370 | 1_1:-59674374 | Msa0032500:CDS |
| CAAGGACATGGGCACTTCAT+TGG | 0.341280 | 1_1:-59672260 | Msa0032500:CDS |
| AAATAATTACCAGGTAAGTT+AGG | 0.347260 | 1_1:+59675390 | None:intergenic |
| TGAATCTCTCGAACCTTTGA+AGG | 0.348909 | 1_1:+59674386 | None:intergenic |
| TGGGCACTTCATTGGGTAGA+TGG | 0.352061 | 1_1:-59672252 | Msa0032500:CDS |
| ATTCTAACATTGAATCTAAA+AGG | 0.356408 | 1_1:-59674074 | Msa0032500:CDS |
| CACCTGAATATAAGATGAAT+TGG | 0.375181 | 1_1:-59672660 | Msa0032500:CDS |
| TCTAAAAGAACTCACTTTGT+TGG | 0.379512 | 1_1:-59675529 | None:intergenic |
| TAAGAATGCAGCATATTTAG+AGG | 0.380059 | 1_1:-59674574 | Msa0032500:CDS |
| TTTATGAGCCTTTGGTTCAA+TGG | 0.380731 | 1_1:+59674719 | None:intergenic |
| GCCAACTCTCTTTGATCTGT+TGG | 0.381202 | 1_1:-59672530 | Msa0032500:CDS |
| GATGTTGGAGTTTAGAAGCA+TGG | 0.384847 | 1_1:-59672314 | Msa0032500:CDS |
| CTTATCAGTTACTCTTGTGC+TGG | 0.385816 | 1_1:+59674050 | None:intergenic |
| ACTCAGCAATGTAGAATTGA+TGG | 0.386018 | 1_1:-59672578 | Msa0032500:CDS |
| AGGGATATGTTGAATTTGAA+TGG | 0.390361 | 1_1:-59674288 | Msa0032500:CDS |
| AACCAATTCATCTATCAAAT+AGG | 0.394619 | 1_1:+59672171 | None:intergenic |
| TGGCATGAATCAGCAACTTC+AGG | 0.397356 | 1_1:-59673449 | Msa0032500:intron |
| TCTTTGATCTGTTGGAGAAT+CGG | 0.419385 | 1_1:-59672522 | Msa0032500:CDS |
| TGTGCTCCTCATATATAGTT+GGG | 0.423119 | 1_1:+59674524 | None:intergenic |
| ATGAATTGGTTTCTGATTTG+TGG | 0.425319 | 1_1:-59672159 | Msa0032500:CDS |
| TGAGTCTGGCTACTAGCCCT+GGG | 0.426455 | 1_1:+59674841 | None:intergenic |
| TCAAATTATGATACAATGCT+TGG | 0.428269 | 1_1:-59673469 | Msa0032500:CDS |
| AGTAGCCAGACTCATGGGTT+TGG | 0.431579 | 1_1:-59674832 | Msa0032500:CDS |
| TCCTACGAGGTTACATGTAA+TGG | 0.436748 | 1_1:-59673698 | Msa0032500:CDS |
| ATATAACTTGCTCCTCATCT+TGG | 0.439222 | 1_1:+59674422 | None:intergenic |
| TACAAAATCATCAAGGATGA+TGG | 0.444399 | 1_1:-59672623 | Msa0032500:CDS |
| TTGTTATGAGTAACTGAAAT+GGG | 0.447444 | 1_1:+59674636 | None:intergenic |
| GAACCAAAGGCTCATAAAAT+GGG | 0.450651 | 1_1:-59674714 | Msa0032500:CDS |
| TGAATCCAAACCCATGAGTC+TGG | 0.452723 | 1_1:+59674827 | None:intergenic |
| TGAAGCCTTTGAAAATGGCT+TGG | 0.457955 | 1_1:-59672215 | Msa0032500:CDS |
| AAGAATACTCTAAGCTCATA+AGG | 0.458971 | 1_1:-59672477 | Msa0032500:CDS |
| AAGGACATGGGCACTTCATT+GGG | 0.459728 | 1_1:-59672259 | Msa0032500:CDS |
| GCCAGAACAGCACCGTTCTT+AGG | 0.459790 | 1_1:-59674209 | Msa0032500:CDS |
| TTACAGCTTGGATCTTCCAT+TGG | 0.460975 | 1_1:+59673238 | None:intergenic |
| TTTCATCAGCAAAAGTAACT+TGG | 0.461060 | 1_1:-59673146 | Msa0032500:CDS |
| ACTGATGCCACCATGCATCT+AGG | 0.461328 | 1_1:+59672376 | None:intergenic |
| ACAATTGTTTCAGATAAAGA+TGG | 0.464516 | 1_1:-59674961 | Msa0032500:intron |
| GTTTAGAAGCATGGAAGAAA+AGG | 0.471076 | 1_1:-59672305 | Msa0032500:CDS |
| GAAGGGTGTGATAAGGCCCC+AGG | 0.473540 | 1_1:-59674858 | Msa0032500:CDS |
| AAAATGAAACTTTGTCTCCA+AGG | 0.473878 | 1_1:-59674668 | Msa0032500:CDS |
| GTTTGTTATCGTCCTAGCGC+TGG | 0.478195 | 1_1:+59674110 | None:intergenic |
| GCTTCCTTAGCTTCTTTGAT+CGG | 0.480496 | 1_1:-59675449 | Msa0032500:CDS |
| TTTCAATGTTTCCCTTTGCA+TGG | 0.487929 | 1_1:+59675268 | None:intergenic |
| TTTGTTATGAGTAACTGAAA+TGG | 0.489794 | 1_1:+59674635 | None:intergenic |
| GAAATAGAACGGTGTTCTGT+TGG | 0.491216 | 1_1:-59673619 | Msa0032500:CDS |
| TTGTGCTCCTCATATATAGT+TGG | 0.491806 | 1_1:+59674523 | None:intergenic |
| TATCACAATCCTAACTTACC+TGG | 0.492317 | 1_1:-59675399 | Msa0032500:intron |
| ATATACTTCTTCATCTTGCA+TGG | 0.495644 | 1_1:+59672708 | None:intergenic |
| ATTTCTGAGGCACATTGAGG+TGG | 0.497061 | 1_1:+59673637 | None:intergenic |
| AGAAGTGTACAAGGAGATGT+TGG | 0.498153 | 1_1:-59672329 | Msa0032500:CDS |
| AAGAGTAACTGATAAGCAAA+AGG | 0.502215 | 1_1:-59674043 | Msa0032500:CDS |
| CTGTTGGAGAATCGGAGAAC+TGG | 0.510605 | 1_1:-59672514 | Msa0032500:CDS |
| TGCCCAATTTATCACTAAGC+AGG | 0.510690 | 1_1:+59673515 | None:intergenic |
| AAGTCTACTTCAACCTTCAA+AGG | 0.512513 | 1_1:-59674399 | Msa0032500:CDS |
| AATAGGTCTTGCCTAGGTAA+AGG | 0.513285 | 1_1:-59674357 | Msa0032500:CDS |
| CTTTGAACCTCGGCATTGGA+TGG | 0.515084 | 1_1:+59674312 | None:intergenic |
| CCTACTTTGAACCTCGGCAT+TGG | 0.515663 | 1_1:+59674308 | None:intergenic |
| TGAAATCATGCCAATGTCAC+AGG | 0.515734 | 1_1:-59675250 | Msa0032500:intron |
| GCATGGTATGCAACACATCA+AGG | 0.515846 | 1_1:-59673564 | Msa0032500:CDS |
| CAGAAAGTTCGACCAGCGCT+AGG | 0.516699 | 1_1:-59674122 | Msa0032500:CDS |
| CATTCCGATCAAAGAAGCTA+AGG | 0.517044 | 1_1:+59675445 | None:intergenic |
| GATGTTTCAAACCATGCAAA+GGG | 0.520211 | 1_1:-59675279 | Msa0032500:CDS |
| CTGGTGTTTACCTGTGACAT+TGG | 0.521249 | 1_1:+59675240 | None:intergenic |
| TTGCAGATCAAGAGTTCTCA+AGG | 0.524434 | 1_1:+59674473 | None:intergenic |
| CATATAGCATGACAGAAAGC+AGG | 0.529033 | 1_1:-59673873 | Msa0032500:CDS |
| GGGCTAGTAGCCAGACTCAT+GGG | 0.531216 | 1_1:-59674837 | Msa0032500:CDS |
| AATGGAGAAAAGAAGTTACA+AGG | 0.533794 | 1_1:-59675475 | Msa0032500:CDS |
| CAAGTCCCCAACTATATATG+AGG | 0.533920 | 1_1:-59674530 | Msa0032500:CDS |
| GTTAGCAGAAGAAGTGTACA+AGG | 0.536107 | 1_1:-59672338 | Msa0032500:CDS |
| GAAATGGGTTTAGCAGACCT+TGG | 0.538176 | 1_1:+59674651 | None:intergenic |
| GATGGAACTTGAATATGTAA+AGG | 0.538230 | 1_1:-59672605 | Msa0032500:CDS |
| AGAGTTCTTCAGAAAAGAAG+AGG | 0.548294 | 1_1:-59673999 | Msa0032500:CDS |
| CATCAGTGATGAGGAAAGGT+TGG | 0.550514 | 1_1:-59672360 | Msa0032500:CDS |
| GAAAATAATAGGTCTTGCCT+AGG | 0.551230 | 1_1:-59674363 | Msa0032500:CDS |
| TCTATTTCTGAGGCACATTG+AGG | 0.551487 | 1_1:+59673634 | None:intergenic |
| TTGTGATACCATTGAACCAA+AGG | 0.551569 | 1_1:-59674727 | Msa0032500:CDS |
| CAATGCCGAGGTTCAAAGTA+GGG | 0.554685 | 1_1:-59674307 | Msa0032500:CDS |
| CCAATGCCGAGGTTCAAAGT+AGG | 0.555210 | 1_1:-59674308 | Msa0032500:CDS |
| TATAAAATGTAATGTTACAA+TGG | 0.555302 | 1_1:-59673917 | Msa0032500:CDS |
| AGGAGCACAATGTCTTCAGT+TGG | 0.557248 | 1_1:-59674510 | Msa0032500:CDS |
| AGGGCTAGTAGCCAGACTCA+TGG | 0.557813 | 1_1:-59674838 | Msa0032500:CDS |
| ATGGAGAAAAGAAGTTACAA+GGG | 0.561403 | 1_1:-59675474 | Msa0032500:CDS |
| TTACATTTACATCTCCATTG+AGG | 0.562743 | 1_1:-59673837 | Msa0032500:CDS |
| TTTGCTGGTTTGCCTAAGAA+CGG | 0.562748 | 1_1:+59674197 | None:intergenic |
| CTAAGCAAGTGATGGAAACA+AGG | 0.566796 | 1_1:-59673786 | Msa0032500:CDS |
| TCCAACAGATCAAAGAGAGT+TGG | 0.567522 | 1_1:+59672529 | None:intergenic |
| TGATGATGAAGGGTGTGATA+AGG | 0.567960 | 1_1:-59674865 | Msa0032500:CDS |
| ATTAGTAGTGATGATGATGA+AGG | 0.568918 | 1_1:-59674876 | Msa0032500:CDS |
| TTGTTGAAAGGTGCAAAGCA+TGG | 0.577795 | 1_1:-59672399 | Msa0032500:CDS |
| TCTTAGGCTTCATACTAACA+TGG | 0.580559 | 1_1:+59674592 | None:intergenic |
| TAGTGATAAATTGGGCAGCA+TGG | 0.582742 | 1_1:-59673509 | Msa0032500:CDS |
| AGAACACCGTTCTATTTCTG+AGG | 0.582791 | 1_1:+59673624 | None:intergenic |
| GTCGACTACTAAGCAAGTGA+TGG | 0.583625 | 1_1:-59673794 | Msa0032500:CDS |
| TGAGCTTGTTAGCAAGGACA+TGG | 0.584116 | 1_1:-59672272 | Msa0032500:CDS |
| AACCTGCTTAGTGATAAATT+GGG | 0.585492 | 1_1:-59673517 | Msa0032500:CDS |
| TCACTTAGATTCCTTAAACA+TGG | 0.585838 | 1_1:-59674772 | Msa0032500:CDS |
| TCTGTAGATATCAGAACCAA+TGG | 0.586401 | 1_1:-59673254 | Msa0032500:intron |
| TCACTACTTGCAATATCACT+AGG | 0.586974 | 1_1:+59674921 | None:intergenic |
| AATGCATGGAATTAAGATGC+AGG | 0.588770 | 1_1:-59672429 | Msa0032500:CDS |
| AGATGTTTCAAACCATGCAA+AGG | 0.589368 | 1_1:-59675280 | Msa0032500:CDS |
| TTTCTGAGGCACATTGAGGT+GGG | 0.592064 | 1_1:+59673638 | None:intergenic |
| AAAGCTCTACAAAATCATCA+AGG | 0.594973 | 1_1:-59672630 | Msa0032500:CDS |
| CATGGAAGAAAAGGTGATGG+TGG | 0.599419 | 1_1:-59672296 | Msa0032500:CDS |
| TAAGTGACAACATAATGAAG+TGG | 0.601855 | 1_1:+59674788 | None:intergenic |
| CATATCCCTACTTTGAACCT+CGG | 0.606736 | 1_1:+59674302 | None:intergenic |
| GTGCTCCTCATATATAGTTG+GGG | 0.610822 | 1_1:+59674525 | None:intergenic |
| CGCAACACGGAACCAAGATG+AGG | 0.611483 | 1_1:-59674434 | Msa0032500:CDS |
| AGAAGACAGATTTAACAGCA+TGG | 0.621284 | 1_1:-59673581 | Msa0032500:CDS |
| GTGACAACATAATGAAGTGG+AGG | 0.623561 | 1_1:+59674791 | None:intergenic |
| GTTCTTAGGCAAACCAGCAA+AGG | 0.627546 | 1_1:-59674195 | Msa0032500:CDS |
| CATGGTATGCAACACATCAA+GGG | 0.628447 | 1_1:-59673563 | Msa0032500:CDS |
| CAAAGCATGGCCTAGATGCA+TGG | 0.630631 | 1_1:-59672386 | Msa0032500:CDS |
| TGACTGTGTAAGTGAATGCA+TGG | 0.630868 | 1_1:-59672443 | Msa0032500:CDS |
| GGTGGATGAGCTTGTTAGCA+AGG | 0.631696 | 1_1:-59672278 | Msa0032500:CDS |
| CAGATAAAGATGGATGACAA+TGG | 0.635008 | 1_1:-59674951 | Msa0032500:CDS |
| GATAGTGAAGATAGCACATG+TGG | 0.644975 | 1_1:-59673124 | Msa0032500:intron |
| AAGCATGGAAGAAAAGGTGA+TGG | 0.648437 | 1_1:-59672299 | Msa0032500:CDS |
| ATATAGCATGACAGAAAGCA+GGG | 0.649280 | 1_1:-59673872 | Msa0032500:CDS |
| TGCAGATCAAGAGTTCTCAA+GGG | 0.654144 | 1_1:+59674474 | None:intergenic |
| GAGTCTGGCTACTAGCCCTG+GGG | 0.654903 | 1_1:+59674842 | None:intergenic |
| AATGTGCCTCAGAAATAGAA+CGG | 0.658499 | 1_1:-59673630 | Msa0032500:CDS |
| AAGGGTGTGATAAGGCCCCA+GGG | 0.660078 | 1_1:-59674857 | Msa0032500:CDS |
| TCCATTACATGTAACCTCGT+AGG | 0.664556 | 1_1:+59673697 | None:intergenic |
| CGTGATCAGAATGACGCACG+AGG | 0.670720 | 1_1:-59673976 | Msa0032500:CDS |
| GGCATCTGCTAAGAGCATTG+AGG | 0.678302 | 1_1:-59674553 | Msa0032500:CDS |
| GCATGGTGGCATCAGTGATG+AGG | 0.679121 | 1_1:-59672369 | Msa0032500:CDS |
| TTAGTAGTGATGATGATGAA+GGG | 0.685067 | 1_1:-59674875 | Msa0032500:CDS |
| GTGGCATCAGTGATGAGGAA+AGG | 0.685249 | 1_1:-59672364 | Msa0032500:CDS |
| GGAGAATCGGAGAACTGGTG+TGG | 0.691183 | 1_1:-59672509 | Msa0032500:CDS |
| TGTAACACCATCCAATGCCG+AGG | 0.692381 | 1_1:-59674319 | Msa0032500:CDS |
| GAGCTTGTTAGCAAGGACAT+GGG | 0.693709 | 1_1:-59672271 | Msa0032500:CDS |
| AAATTGGAAACAGCGCAACA+CGG | 0.695462 | 1_1:-59674447 | Msa0032500:CDS |
| AGCATGGCCTAGATGCATGG+TGG | 0.715972 | 1_1:-59672383 | Msa0032500:CDS |
| AATTATCATTATCTCCTACG+AGG | 0.717855 | 1_1:-59673711 | Msa0032500:CDS |
| AGGACGATAACAAACAAATG+CGG | 0.767520 | 1_1:-59674102 | Msa0032500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTAATAATAATAAGAAA+GGG | + | chr1_1:59672699-59672718 | None:intergenic | 10.0% |
| !! | AATTGTAATAATAATAAGAA+AGG | + | chr1_1:59672700-59672719 | None:intergenic | 10.0% |
| !! | TATAAAATGTAATGTTACAA+TGG | - | chr1_1:59673758-59673777 | Msa0032500:CDS | 15.0% |
| !! | AAGAAAAAAATGGTTAAACT+AGG | + | chr1_1:59672488-59672507 | None:intergenic | 20.0% |
| !!! | ATCACTACTAATTGATAATA+AGG | + | chr1_1:59672791-59672810 | None:intergenic | 20.0% |
| !! | ATTCTAACATTGAATCTAAA+AGG | - | chr1_1:59673601-59673620 | Msa0032500:CDS | 20.0% |
| !!! | TTACTCATTTTCATTTGTTA+TGG | - | chr1_1:59674276-59674295 | Msa0032500:CDS | 20.0% |
| !! | TAAACATAGTATATTATCCT+TGG | - | chr1_1:59674322-59674341 | Msa0032500:CDS | 20.0% |
| !!! | GAACAAGCATTAATATTTTA+TGG | + | chr1_1:59674906-59674925 | None:intergenic | 20.0% |
| !!! | TCATATATAACCCTTTTTTT+AGG | - | chr1_1:59674924-59674943 | Msa0032500:CDS | 20.0% |
| !!! | TCTTTCTTTGTTGATGATAA+TGG | - | chr1_1:59672182-59672201 | Msa0032500:CDS | 25.0% |
| !!! | TTGTGATAAAAGTGTTTCTT+TGG | + | chr1_1:59672264-59672283 | None:intergenic | 25.0% |
| ! | AAATAATTACCAGGTAAGTT+AGG | + | chr1_1:59672288-59672307 | None:intergenic | 25.0% |
| ! | AAAGACTAGAAATAATTACC+AGG | + | chr1_1:59672297-59672316 | None:intergenic | 25.0% |
| ! | GAGCAAAAAATATTCAGAAT+AGG | + | chr1_1:59672365-59672384 | None:intergenic | 25.0% |
| ! | TTAAACTAGGAAACTAAGAA+AGG | + | chr1_1:59672475-59672494 | None:intergenic | 25.0% |
| ! | GTCTTAACAAAATGTCATTA+GGG | + | chr1_1:59672553-59672572 | None:intergenic | 25.0% |
| ! | TGTCTTAACAAAATGTCATT+AGG | + | chr1_1:59672554-59672573 | None:intergenic | 25.0% |
| !! | CTACATAAAACTTCCTTTTT+AGG | - | chr1_1:59672635-59672654 | Msa0032500:CDS | 25.0% |
| ! | ACAATTGTTTCAGATAAAGA+TGG | - | chr1_1:59672714-59672733 | Msa0032500:CDS | 25.0% |
| ! | TTGTTATGAGTAACTGAAAT+GGG | + | chr1_1:59673042-59673061 | None:intergenic | 25.0% |
| !! | TTTGTTATGAGTAACTGAAA+TGG | + | chr1_1:59673043-59673062 | None:intergenic | 25.0% |
| ! | TGTTGAATTTGAATGGAAAT+AGG | - | chr1_1:59673394-59673413 | Msa0032500:intron | 25.0% |
| ! | TCAAACCAGAAAAATTGTAA+TGG | - | chr1_1:59673444-59673463 | Msa0032500:intron | 25.0% |
| ! | AAAAGAATCAACATCAATTC+TGG | + | chr1_1:59673916-59673935 | None:intergenic | 25.0% |
| !! | GGAGATAATGATAATTTTTC+AGG | + | chr1_1:59673960-59673979 | None:intergenic | 25.0% |
| ! | TCAAATTATGATACAATGCT+TGG | - | chr1_1:59674206-59674225 | Msa0032500:CDS | 25.0% |
| ! | TGTAACAACAAAAATGAAAG+CGG | - | chr1_1:59674455-59674474 | Msa0032500:CDS | 25.0% |
| ! | ACTTCAAAGTTAAGCAAAAT+TGG | + | chr1_1:59674729-59674748 | None:intergenic | 25.0% |
| !!! | TATATAACCCTTTTTTTAGG+AGG | - | chr1_1:59674927-59674946 | Msa0032500:CDS | 25.0% |
| ! | AACCAATTCATCTTATATTC+AGG | + | chr1_1:59675020-59675039 | None:intergenic | 25.0% |
| ! | TACCTATTTGATAGATGAAT+TGG | - | chr1_1:59675502-59675521 | Msa0032500:exon | 25.0% |
| ! | AACCAATTCATCTATCAAAT+AGG | + | chr1_1:59675507-59675526 | None:intergenic | 25.0% |
| AATGGAGAAAAGAAGTTACA+AGG | - | chr1_1:59672200-59672219 | Msa0032500:CDS | 30.0% | |
| ATGGAGAAAAGAAGTTACAA+GGG | - | chr1_1:59672201-59672220 | Msa0032500:CDS | 30.0% | |
| AAAGGTTGAAAAAATCACAC+TGG | + | chr1_1:59672457-59672476 | None:intergenic | 30.0% | |
| ! | ACTTGTTAAGAAGCCTAAAA+AGG | + | chr1_1:59672651-59672670 | None:intergenic | 30.0% |
| ! | ATTAGTAGTGATGATGATGA+AGG | - | chr1_1:59672799-59672818 | Msa0032500:intron | 30.0% |
| ! | TTAGTAGTGATGATGATGAA+GGG | - | chr1_1:59672800-59672819 | Msa0032500:intron | 30.0% |
| TAAGTGACAACATAATGAAG+TGG | + | chr1_1:59672890-59672909 | None:intergenic | 30.0% | |
| TCACTTAGATTCCTTAAACA+TGG | - | chr1_1:59672903-59672922 | Msa0032500:intron | 30.0% | |
| AAAATGAAACTTTGTCTCCA+AGG | - | chr1_1:59673007-59673026 | Msa0032500:intron | 30.0% | |
| ! | ATACTAACATGGCTTTTGAT+AGG | + | chr1_1:59673075-59673094 | None:intergenic | 30.0% |
| TCTAAATATGCTGCATTCTT+AGG | + | chr1_1:59673102-59673121 | None:intergenic | 30.0% | |
| TAAGAATGCAGCATATTTAG+AGG | - | chr1_1:59673101-59673120 | Msa0032500:intron | 30.0% | |
| CGAGAGATTCAGAAAATAAT+AGG | - | chr1_1:59673301-59673320 | Msa0032500:intron | 30.0% | |
| AGGGATATGTTGAATTTGAA+TGG | - | chr1_1:59673387-59673406 | Msa0032500:intron | 30.0% | |
| !! | ACAAGTTTGTGTTGACTTAT+TGG | + | chr1_1:59673529-59673548 | None:intergenic | 30.0% |
| AAGAGTAACTGATAAGCAAA+AGG | - | chr1_1:59673632-59673651 | Msa0032500:CDS | 30.0% | |
| !! | TTCTGAAGAACTCTTTCTTT+TGG | + | chr1_1:59673670-59673689 | None:intergenic | 30.0% |
| TTACATTTACATCTCCATTG+AGG | - | chr1_1:59673838-59673857 | Msa0032500:CDS | 30.0% | |
| ! | TGAGATATGTTTTTCCTCAA+TGG | + | chr1_1:59673855-59673874 | None:intergenic | 30.0% |
| ! | TTCTTTTCATCACGTTGATA+AGG | - | chr1_1:59673929-59673948 | Msa0032500:CDS | 30.0% |
| AATTATCATTATCTCCTACG+AGG | - | chr1_1:59673964-59673983 | Msa0032500:CDS | 30.0% | |
| AACCTGCTTAGTGATAAATT+GGG | - | chr1_1:59674158-59674177 | Msa0032500:CDS | 30.0% | |
| ATATCTACAGAAGAGAAGAA+TGG | + | chr1_1:59674412-59674431 | None:intergenic | 30.0% | |
| !!! | TCATTTTTGTTGTTACAGCT+TGG | + | chr1_1:59674452-59674471 | None:intergenic | 30.0% |
| !!! | AAGTTACTTTTGCTGATGAA+AGG | + | chr1_1:59674530-59674549 | None:intergenic | 30.0% |
| TTTCATCAGCAAAAGTAACT+TGG | - | chr1_1:59674529-59674548 | Msa0032500:CDS | 30.0% | |
| GCAAAATTATTCTTATCAGC+TGG | - | chr1_1:59674703-59674722 | Msa0032500:CDS | 30.0% | |
| ATATACTTCTTCATCTTGCA+TGG | + | chr1_1:59674970-59674989 | None:intergenic | 30.0% | |
| CACCTGAATATAAGATGAAT+TGG | - | chr1_1:59675015-59675034 | Msa0032500:intron | 30.0% | |
| AAAGCTCTACAAAATCATCA+AGG | - | chr1_1:59675045-59675064 | Msa0032500:intron | 30.0% | |
| TACAAAATCATCAAGGATGA+TGG | - | chr1_1:59675052-59675071 | Msa0032500:intron | 30.0% | |
| GATGGAACTTGAATATGTAA+AGG | - | chr1_1:59675070-59675089 | Msa0032500:intron | 30.0% | |
| AAGAATACTCTAAGCTCATA+AGG | - | chr1_1:59675198-59675217 | Msa0032500:intron | 30.0% | |
| !! | AAATTCCAAGCCATTTTCAA+AGG | + | chr1_1:59675468-59675487 | None:intergenic | 30.0% |
| ! | ATGAATTGGTTTCTGATTTG+TGG | - | chr1_1:59675516-59675535 | Msa0032500:five_prime_UTR | 30.0% |
| TATCACAATCCTAACTTACC+TGG | - | chr1_1:59672276-59672295 | Msa0032500:CDS | 35.0% | |
| AGATGTTTCAAACCATGCAA+AGG | - | chr1_1:59672395-59672414 | Msa0032500:CDS | 35.0% | |
| GATGTTTCAAACCATGCAAA+GGG | - | chr1_1:59672396-59672415 | Msa0032500:CDS | 35.0% | |
| TTTCAATGTTTCCCTTTGCA+TGG | + | chr1_1:59672410-59672429 | None:intergenic | 35.0% | |
| TCGTGCTAACAAATTCTGTA+AGG | + | chr1_1:59672676-59672695 | None:intergenic | 35.0% | |
| CAGATAAAGATGGATGACAA+TGG | - | chr1_1:59672724-59672743 | Msa0032500:CDS | 35.0% | |
| TCACTACTTGCAATATCACT+AGG | + | chr1_1:59672757-59672776 | None:intergenic | 35.0% | |
| TGACTTAAGAGCCATGTTTA+AGG | + | chr1_1:59672917-59672936 | None:intergenic | 35.0% | |
| TTGTGATACCATTGAACCAA+AGG | - | chr1_1:59672948-59672967 | Msa0032500:intron | 35.0% | |
| ! | TTTATGAGCCTTTGGTTCAA+TGG | + | chr1_1:59672959-59672978 | None:intergenic | 35.0% |
| TGAACCAAAGGCTCATAAAA+TGG | - | chr1_1:59672960-59672979 | Msa0032500:intron | 35.0% | |
| GAACCAAAGGCTCATAAAAT+GGG | - | chr1_1:59672961-59672980 | Msa0032500:intron | 35.0% | |
| ! | TTTCCCATTTTATGAGCCTT+TGG | + | chr1_1:59672967-59672986 | None:intergenic | 35.0% |
| TCTTAGGCTTCATACTAACA+TGG | + | chr1_1:59673086-59673105 | None:intergenic | 35.0% | |
| TGTGCTCCTCATATATAGTT+GGG | + | chr1_1:59673154-59673173 | None:intergenic | 35.0% | |
| TTGTGCTCCTCATATATAGT+TGG | + | chr1_1:59673155-59673174 | None:intergenic | 35.0% | |
| TCTTGATCTGCAAGAGAAAT+TGG | - | chr1_1:59673212-59673231 | Msa0032500:CDS | 35.0% | |
| !! | ATATAACTTGCTCCTCATCT+TGG | + | chr1_1:59673256-59673275 | None:intergenic | 35.0% |
| AAGTCTACTTCAACCTTCAA+AGG | - | chr1_1:59673276-59673295 | Msa0032500:intron | 35.0% | |
| GAAAATAATAGGTCTTGCCT+AGG | - | chr1_1:59673312-59673331 | Msa0032500:intron | 35.0% | |
| ! | AAGCAGATTTTCCTTTACCT+AGG | + | chr1_1:59673332-59673351 | None:intergenic | 35.0% |
| ! | TCTGGCCATTACAATTTTTC+TGG | + | chr1_1:59673452-59673471 | None:intergenic | 35.0% |
| ! | TGAAGTTGATTTACCTTTGC+TGG | + | chr1_1:59673496-59673515 | None:intergenic | 35.0% |
| AGGACGATAACAAACAAATG+CGG | - | chr1_1:59673573-59673592 | Msa0032500:CDS | 35.0% | |
| AGAGTTCTTCAGAAAAGAAG+AGG | - | chr1_1:59673676-59673695 | Msa0032500:CDS | 35.0% | |
| ATATAGCATGACAGAAAGCA+GGG | - | chr1_1:59673803-59673822 | Msa0032500:CDS | 35.0% | |
| AATGTGCCTCAGAAATAGAA+CGG | - | chr1_1:59674045-59674064 | Msa0032500:CDS | 35.0% | |
| AGAAGACAGATTTAACAGCA+TGG | - | chr1_1:59674094-59674113 | Msa0032500:CDS | 35.0% | |
| GAACCTGCTTAGTGATAAAT+TGG | - | chr1_1:59674157-59674176 | Msa0032500:CDS | 35.0% | |
| TATTATCCTTGGCAACTTTC+TGG | - | chr1_1:59674333-59674352 | Msa0032500:CDS | 35.0% | |
| ATCAGTTAGTCAAAGAGATG+AGG | - | chr1_1:59674357-59674376 | Msa0032500:CDS | 35.0% | |
| TCTGTAGATATCAGAACCAA+TGG | - | chr1_1:59674421-59674440 | Msa0032500:CDS | 35.0% | |
| ! | CAGAAGTGTAAAGACAATCA+AGG | + | chr1_1:59674589-59674608 | None:intergenic | 35.0% |
| TCTCAAGGTTATTCAAAGCA+TGG | + | chr1_1:59674677-59674696 | None:intergenic | 35.0% | |
| ! | TAATTTTGCAGCATGTCTCA+AGG | + | chr1_1:59674692-59674711 | None:intergenic | 35.0% |
| ACTCAGCAATGTAGAATTGA+TGG | - | chr1_1:59675097-59675116 | Msa0032500:intron | 35.0% | |
| TCTTTGATCTGTTGGAGAAT+CGG | - | chr1_1:59675153-59675172 | Msa0032500:intron | 35.0% | |
| AATGCATGGAATTAAGATGC+AGG | - | chr1_1:59675246-59675265 | Msa0032500:intron | 35.0% | |
| ! | GTTTAGAAGCATGGAAGAAA+AGG | - | chr1_1:59675370-59675389 | Msa0032500:intron | 35.0% |
| ! | GACATTGAAGCCTTTGAAAA+TGG | - | chr1_1:59675455-59675474 | Msa0032500:CDS | 35.0% |
| GCTTCCTTAGCTTCTTTGAT+CGG | - | chr1_1:59672226-59672245 | Msa0032500:CDS | 40.0% | |
| CATTCCGATCAAAGAAGCTA+AGG | + | chr1_1:59672233-59672252 | None:intergenic | 40.0% | |
| TGAAATCATGCCAATGTCAC+AGG | - | chr1_1:59672425-59672444 | Msa0032500:CDS | 40.0% | |
| ! | TGATGATGAAGGGTGTGATA+AGG | - | chr1_1:59672810-59672829 | Msa0032500:intron | 40.0% |
| GTGACAACATAATGAAGTGG+AGG | + | chr1_1:59672887-59672906 | None:intergenic | 40.0% | |
| CAAGTCCCCAACTATATATG+AGG | - | chr1_1:59673145-59673164 | Msa0032500:CDS | 40.0% | |
| GTGCTCCTCATATATAGTTG+GGG | + | chr1_1:59673153-59673172 | None:intergenic | 40.0% | |
| TGCAGATCAAGAGTTCTCAA+GGG | + | chr1_1:59673204-59673223 | None:intergenic | 40.0% | |
| TTGCAGATCAAGAGTTCTCA+AGG | + | chr1_1:59673205-59673224 | None:intergenic | 40.0% | |
| AAATTGGAAACAGCGCAACA+CGG | - | chr1_1:59673228-59673247 | Msa0032500:CDS | 40.0% | |
| TGAATCTCTCGAACCTTTGA+AGG | + | chr1_1:59673292-59673311 | None:intergenic | 40.0% | |
| AATAGGTCTTGCCTAGGTAA+AGG | - | chr1_1:59673318-59673337 | Msa0032500:intron | 40.0% | |
| CATATCCCTACTTTGAACCT+CGG | + | chr1_1:59673376-59673395 | None:intergenic | 40.0% | |
| !! | TTTGCTGGTTTGCCTAAGAA+CGG | + | chr1_1:59673481-59673500 | None:intergenic | 40.0% |
| CTTATCAGTTACTCTTGTGC+TGG | + | chr1_1:59673628-59673647 | None:intergenic | 40.0% | |
| CATATAGCATGACAGAAAGC+AGG | - | chr1_1:59673802-59673821 | Msa0032500:CDS | 40.0% | |
| ! | CTAAGCAAGTGATGGAAACA+AGG | - | chr1_1:59673889-59673908 | Msa0032500:CDS | 40.0% |
| TCCTACGAGGTTACATGTAA+TGG | - | chr1_1:59673977-59673996 | Msa0032500:CDS | 40.0% | |
| TCCATTACATGTAACCTCGT+AGG | + | chr1_1:59673981-59674000 | None:intergenic | 40.0% | |
| !! | TCTATTTCTGAGGCACATTG+AGG | + | chr1_1:59674044-59674063 | None:intergenic | 40.0% |
| !! | AGAACACCGTTCTATTTCTG+AGG | + | chr1_1:59674054-59674073 | None:intergenic | 40.0% |
| GAAATAGAACGGTGTTCTGT+TGG | - | chr1_1:59674056-59674075 | Msa0032500:CDS | 40.0% | |
| CATGGTATGCAACACATCAA+GGG | - | chr1_1:59674112-59674131 | Msa0032500:CDS | 40.0% | |
| TGCCCAATTTATCACTAAGC+AGG | + | chr1_1:59674163-59674182 | None:intergenic | 40.0% | |
| TAGTGATAAATTGGGCAGCA+TGG | - | chr1_1:59674166-59674185 | Msa0032500:CDS | 40.0% | |
| AGTTAGTCAAAGAGATGAGG+AGG | - | chr1_1:59674360-59674379 | Msa0032500:CDS | 40.0% | |
| TTACAGCTTGGATCTTCCAT+TGG | + | chr1_1:59674440-59674459 | None:intergenic | 40.0% | |
| GATAGTGAAGATAGCACATG+TGG | - | chr1_1:59674551-59674570 | Msa0032500:CDS | 40.0% | |
| CGTCGTTATAAAACATGCAG+GGG | + | chr1_1:59674793-59674812 | None:intergenic | 40.0% | |
| GCGTCGTTATAAAACATGCA+GGG | + | chr1_1:59674794-59674813 | None:intergenic | 40.0% | |
| AGCGTCGTTATAAAACATGC+AGG | + | chr1_1:59674795-59674814 | None:intergenic | 40.0% | |
| GGATGTATGTATTTGTGCAG+AGG | + | chr1_1:59674885-59674904 | None:intergenic | 40.0% | |
| TCTGCTGCCTCCTAAAAAAA+GGG | + | chr1_1:59674937-59674956 | None:intergenic | 40.0% | |
| TCCAACAGATCAAAGAGAGT+TGG | + | chr1_1:59675149-59675168 | None:intergenic | 40.0% | |
| TGACTGTGTAAGTGAATGCA+TGG | - | chr1_1:59675232-59675251 | Msa0032500:intron | 40.0% | |
| ! | GCAGGCAAGTTTTTGTTGAA+AGG | - | chr1_1:59675264-59675283 | Msa0032500:CDS | 40.0% |
| ! | TTGTTGAAAGGTGCAAAGCA+TGG | - | chr1_1:59675276-59675295 | Msa0032500:CDS | 40.0% |
| ! | GTTAGCAGAAGAAGTGTACA+AGG | - | chr1_1:59675337-59675356 | Msa0032500:intron | 40.0% |
| ! | AGAAGTGTACAAGGAGATGT+TGG | - | chr1_1:59675346-59675365 | Msa0032500:intron | 40.0% |
| GATGTTGGAGTTTAGAAGCA+TGG | - | chr1_1:59675361-59675380 | Msa0032500:intron | 40.0% | |
| AAGCATGGAAGAAAAGGTGA+TGG | - | chr1_1:59675376-59675395 | Msa0032500:intron | 40.0% | |
| ! | TGAAGCCTTTGAAAATGGCT+TGG | - | chr1_1:59675460-59675479 | Msa0032500:CDS | 40.0% |
| CTGGTGTTTACCTGTGACAT+TGG | + | chr1_1:59672438-59672457 | None:intergenic | 45.0% | |
| TGAATCCAAACCCATGAGTC+TGG | + | chr1_1:59672851-59672870 | None:intergenic | 45.0% | |
| ! | GAAATGGGTTTAGCAGACCT+TGG | + | chr1_1:59673027-59673046 | None:intergenic | 45.0% |
| ! | AGGAGCACAATGTCTTCAGT+TGG | - | chr1_1:59673165-59673184 | Msa0032500:CDS | 45.0% |
| CAATGCCGAGGTTCAAAGTA+GGG | - | chr1_1:59673368-59673387 | Msa0032500:intron | 45.0% | |
| GTTCTTAGGCAAACCAGCAA+AGG | - | chr1_1:59673480-59673499 | Msa0032500:CDS | 45.0% | |
| GTCGACTACTAAGCAAGTGA+TGG | - | chr1_1:59673881-59673900 | Msa0032500:CDS | 45.0% | |
| !! | TTTCTGAGGCACATTGAGGT+GGG | + | chr1_1:59674040-59674059 | None:intergenic | 45.0% |
| !! | ATTTCTGAGGCACATTGAGG+TGG | + | chr1_1:59674041-59674060 | None:intergenic | 45.0% |
| GCATGGTATGCAACACATCA+AGG | - | chr1_1:59674111-59674130 | Msa0032500:CDS | 45.0% | |
| TGGCATGAATCAGCAACTTC+AGG | - | chr1_1:59674226-59674245 | Msa0032500:CDS | 45.0% | |
| CTCTGCTGCCTCCTAAAAAA+AGG | + | chr1_1:59674938-59674957 | None:intergenic | 45.0% | |
| GCCAACTCTCTTTGATCTGT+TGG | - | chr1_1:59675145-59675164 | Msa0032500:intron | 45.0% | |
| CATCAGTGATGAGGAAAGGT+TGG | - | chr1_1:59675315-59675334 | Msa0032500:intron | 45.0% | |
| ! | CATGGAAGAAAAGGTGATGG+TGG | - | chr1_1:59675379-59675398 | Msa0032500:intron | 45.0% |
| !! | TGAGCTTGTTAGCAAGGACA+TGG | - | chr1_1:59675403-59675422 | Msa0032500:CDS | 45.0% |
| !! | GAGCTTGTTAGCAAGGACAT+GGG | - | chr1_1:59675404-59675423 | Msa0032500:CDS | 45.0% |
| AAGGACATGGGCACTTCATT+GGG | - | chr1_1:59675416-59675435 | Msa0032500:CDS | 45.0% | |
| !! | AAAAAATTAAAAGAAAAAAA+TGG | + | chr1_1:59672498-59672517 | None:intergenic | 5.0% |
| !!! | TTTTTTCTTTTAATTTTTTA+TGG | - | chr1_1:59672499-59672518 | Msa0032500:CDS | 5.0% |
| AGTAGCCAGACTCATGGGTT+TGG | - | chr1_1:59672843-59672862 | Msa0032500:intron | 50.0% | |
| !! | GGCATCTGCTAAGAGCATTG+AGG | - | chr1_1:59673122-59673141 | Msa0032500:intron | 50.0% |
| TGTAACACCATCCAATGCCG+AGG | - | chr1_1:59673356-59673375 | Msa0032500:intron | 50.0% | |
| ! | CTTTGAACCTCGGCATTGGA+TGG | + | chr1_1:59673366-59673385 | None:intergenic | 50.0% |
| CCTACTTTGAACCTCGGCAT+TGG | + | chr1_1:59673370-59673389 | None:intergenic | 50.0% | |
| CCAATGCCGAGGTTCAAAGT+AGG | - | chr1_1:59673367-59673386 | Msa0032500:intron | 50.0% | |
| !! | GTTTGTTATCGTCCTAGCGC+TGG | + | chr1_1:59673568-59673587 | None:intergenic | 50.0% |
| CTGATGCCAGAAAGTTGCCA+AGG | + | chr1_1:59674342-59674361 | None:intergenic | 50.0% | |
| CTGTTGGAGAATCGGAGAAC+TGG | - | chr1_1:59675161-59675180 | Msa0032500:intron | 50.0% | |
| CAAAGCATGGCCTAGATGCA+TGG | - | chr1_1:59675289-59675308 | Msa0032500:intron | 50.0% | |
| ACTGATGCCACCATGCATCT+AGG | + | chr1_1:59675302-59675321 | None:intergenic | 50.0% | |
| GTGGCATCAGTGATGAGGAA+AGG | - | chr1_1:59675311-59675330 | Msa0032500:intron | 50.0% | |
| !! | GGTGGATGAGCTTGTTAGCA+AGG | - | chr1_1:59675397-59675416 | Msa0032500:intron | 50.0% |
| CAAGGACATGGGCACTTCAT+TGG | - | chr1_1:59675415-59675434 | Msa0032500:CDS | 50.0% | |
| TGGGCACTTCATTGGGTAGA+TGG | - | chr1_1:59675423-59675442 | Msa0032500:CDS | 50.0% | |
| ! | AAGGGTGTGATAAGGCCCCA+GGG | - | chr1_1:59672818-59672837 | Msa0032500:intron | 55.0% |
| TGAGTCTGGCTACTAGCCCT+GGG | + | chr1_1:59672837-59672856 | None:intergenic | 55.0% | |
| ATGAGTCTGGCTACTAGCCC+TGG | + | chr1_1:59672838-59672857 | None:intergenic | 55.0% | |
| ! | AGGGCTAGTAGCCAGACTCA+TGG | - | chr1_1:59672837-59672856 | Msa0032500:intron | 55.0% |
| ! | GGGCTAGTAGCCAGACTCAT+GGG | - | chr1_1:59672838-59672857 | Msa0032500:intron | 55.0% |
| CGCAACACGGAACCAAGATG+AGG | - | chr1_1:59673241-59673260 | Msa0032500:CDS | 55.0% | |
| GCCAGAACAGCACCGTTCTT+AGG | - | chr1_1:59673466-59673485 | Msa0032500:CDS | 55.0% | |
| !! | GCCTAAGAACGGTGCTGTTC+TGG | + | chr1_1:59673470-59673489 | None:intergenic | 55.0% |
| CAGAAAGTTCGACCAGCGCT+AGG | - | chr1_1:59673553-59673572 | Msa0032500:CDS | 55.0% | |
| CGTGATCAGAATGACGCACG+AGG | - | chr1_1:59673699-59673718 | Msa0032500:CDS | 55.0% | |
| GGAGAATCGGAGAACTGGTG+TGG | - | chr1_1:59675166-59675185 | Msa0032500:intron | 55.0% | |
| AGCATGGCCTAGATGCATGG+TGG | - | chr1_1:59675292-59675311 | Msa0032500:intron | 55.0% | |
| GCATGGTGGCATCAGTGATG+AGG | - | chr1_1:59675306-59675325 | Msa0032500:intron | 55.0% | |
| ! | GAAGGGTGTGATAAGGCCCC+AGG | - | chr1_1:59672817-59672836 | Msa0032500:intron | 60.0% |
| GAGTCTGGCTACTAGCCCTG+GGG | + | chr1_1:59672836-59672855 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 59672150 | 59675547 | 59672150 | ID=Msa0032500;Name=Msa0032500 |
| chr1_1 | mRNA | 59672150 | 59675547 | 59672150 | ID=Msa0032500-mRNA-1;Parent=Msa0032500;Name=Msa0032500-mRNA-1;_AED=0.01;_eAED=0.01;_QI=45|0.5|0.4|1|1|1|5|0|806 |
| chr1_1 | exon | 59672150 | 59672751 | 59672150 | ID=Msa0032500-mRNA-1:exon:18452;Parent=Msa0032500-mRNA-1 |
| chr1_1 | exon | 59673125 | 59673269 | 59673125 | ID=Msa0032500-mRNA-1:exon:18451;Parent=Msa0032500-mRNA-1 |
| chr1_1 | exon | 59673450 | 59674970 | 59673450 | ID=Msa0032500-mRNA-1:exon:18450;Parent=Msa0032500-mRNA-1 |
| chr1_1 | exon | 59675251 | 59675300 | 59675251 | ID=Msa0032500-mRNA-1:exon:18449;Parent=Msa0032500-mRNA-1 |
| chr1_1 | exon | 59675400 | 59675547 | 59675400 | ID=Msa0032500-mRNA-1:exon:18448;Parent=Msa0032500-mRNA-1 |
| chr1_1 | five_prime_UTR | 59675503 | 59675547 | 59675503 | ID=Msa0032500-mRNA-1:five_prime_utr;Parent=Msa0032500-mRNA-1 |
| chr1_1 | CDS | 59675400 | 59675502 | 59675400 | ID=Msa0032500-mRNA-1:cds;Parent=Msa0032500-mRNA-1 |
| chr1_1 | CDS | 59675251 | 59675300 | 59675251 | ID=Msa0032500-mRNA-1:cds;Parent=Msa0032500-mRNA-1 |
| chr1_1 | CDS | 59673450 | 59674970 | 59673450 | ID=Msa0032500-mRNA-1:cds;Parent=Msa0032500-mRNA-1 |
| chr1_1 | CDS | 59673125 | 59673269 | 59673125 | ID=Msa0032500-mRNA-1:cds;Parent=Msa0032500-mRNA-1 |
| chr1_1 | CDS | 59672150 | 59672751 | 59672150 | ID=Msa0032500-mRNA-1:cds;Parent=Msa0032500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
