AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0133180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0133180 MtrunA17_Chr1g0202741 89.266 177 19 0 50 226 41 217 8.69e-108 326
Msa0133180 MtrunA17_Chr1g0202731 75.141 177 44 0 50 226 46 222 2.73e-85 268
Msa0133180 MtrunA17_Chr8g0348531 47.222 180 88 3 50 225 54 230 3.90e-45 160
Msa0133180 MtrunA17_Chr8g0348521 43.258 178 98 2 50 225 41 217 1.05e-39 145
Msa0133180 MtrunA17_Chr2g0291481 30.890 191 123 4 65 250 85 271 7.76e-20 88.6
Msa0133180 MtrunA17_Chr8g0349061 35.000 100 64 1 50 149 41 139 2.28e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0133180 AT5G23980.1 56.024 166 64 5 61 225 51 208 1.50e-50 176
Msa0133180 AT5G23990.2 52.023 173 74 4 54 225 44 208 4.85e-48 169
Msa0133180 AT1G01590.1 44.318 176 90 3 53 223 51 223 1.22e-43 157
Msa0133180 AT1G01580.2 49.390 164 77 2 63 223 151 311 3.92e-43 156
Msa0133180 AT1G01580.1 48.795 166 79 2 63 225 73 235 4.25e-43 155
Msa0133180 AT1G23020.1 44.512 164 87 2 63 223 84 246 4.42e-41 150
Msa0133180 AT1G23020.5 44.512 164 87 2 63 223 84 246 4.42e-41 150
Msa0133180 AT1G23020.4 44.512 164 87 2 63 223 61 223 4.55e-41 150
Msa0133180 AT1G23020.3 44.512 164 87 2 63 223 61 223 4.55e-41 150
Msa0133180 AT1G23020.2 44.512 164 88 1 63 223 84 247 4.62e-41 150
Msa0133180 AT1G23020.6 44.512 164 88 1 63 223 61 224 4.67e-41 150
Msa0133180 AT1G23020.7 43.902 164 85 2 63 223 61 220 3.18e-40 147
Msa0133180 AT5G23990.3 70.312 64 19 0 162 225 13 76 1.48e-23 99.8
Msa0133180 AT5G23990.1 70.968 62 18 0 164 225 105 166 6.97e-22 95.1
Msa0133180 AT5G49740.3 27.363 201 138 4 28 225 44 239 6.49e-18 83.6
Msa0133180 AT5G49740.2 27.363 201 138 4 28 225 44 239 7.25e-18 83.2
Msa0133180 AT5G49740.1 27.363 201 138 4 28 225 44 239 7.31e-18 83.2
Msa0133180 AT5G49730.1 31.288 163 104 3 66 225 73 230 3.89e-17 81.3
Msa0133180 AT5G49730.2 31.288 163 104 3 66 225 73 230 5.67e-17 80.5
Msa0133180 AT5G50160.1 29.940 167 108 4 50 213 39 199 6.15e-14 71.6

Find 135 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTTATGCTTCCTGTTTC+TGG 0.045402 1_3:-64457297 Msa0133180:three_prime_UTR
CCAAGCCACAACCAGTTATT+TGG 0.102710 1_3:+64457123 None:intergenic
AGAACTTTCTTCTTCATCTT+TGG 0.207308 1_3:-64457937 Msa0133180:three_prime_UTR
CAACTAGAAGACACCGTAAA+AGG 0.252647 1_3:+64458022 None:intergenic
CAAGCTACCAATGTACATTT+TGG 0.258420 1_3:-64456787 Msa0133180:three_prime_UTR
CACATTCTGCACAATTTCTA+AGG 0.259434 1_3:-64457878 Msa0133180:intron
TCACCAGGGTCATGGATTTA+TGG 0.263989 1_3:-64456853 Msa0133180:three_prime_UTR
GTTCTAGTGTTGTATTTCTT+TGG 0.285019 1_3:-64456942 Msa0133180:three_prime_UTR
GGTGTCTTCTAGTTGTAATT+TGG 0.286944 1_3:-64458014 Msa0133180:three_prime_UTR
GATTCTCCTATGTTATAATT+AGG 0.290296 1_3:-64456376 Msa0133180:three_prime_UTR
CTGGCTTGGGCAATTATCTA+TGG 0.296562 1_3:-64460335 Msa0133180:CDS
ATGGAAGAACCTCTTGTTAC+TGG 0.310648 1_3:+64460406 None:intergenic
CAAGGGCATCACAAGGTAAA+AGG 0.320473 1_3:+64458359 None:intergenic
AAATTATTAAGTGCAACTTT+TGG 0.323174 1_3:+64456267 None:intergenic
TCTCCTATCTCAGCTGTATT+AGG 0.324457 1_3:-64457147 Msa0133180:three_prime_UTR
AACGAGTAACAATTCCTAAA+AGG 0.325542 1_3:+64457064 None:intergenic
TCTCGCCTTCTTTGTGCATA+TGG 0.327570 1_3:+64461088 None:intergenic
TAGAATTTGTGCTTCTGGTT+TGG 0.336429 1_3:-64456512 Msa0133180:three_prime_UTR
TAACAAGCATTCCACGAATA+AGG 0.339631 1_3:-64458564 Msa0133180:CDS
GTTGCTAGAATTTGTGCTTC+TGG 0.342401 1_3:-64456517 Msa0133180:three_prime_UTR
ATATATACTATAGTATAATA+TGG 0.349805 1_3:-64461904 None:intergenic
TTCTTGGATGGCTAACAGTT+TGG 0.352809 1_3:-64461686 Msa0133180:CDS
CTGTATTAGGCCCAAATAAC+TGG 0.356173 1_3:-64457134 Msa0133180:three_prime_UTR
AGGCAAAGATGTTGGAGTTA+TGG 0.357291 1_3:-64456569 Msa0133180:three_prime_UTR
GTACAGTGATGCAACATTAT+AGG 0.357711 1_3:+64456448 None:intergenic
ACATTCCCTATGATGTTCAT+TGG 0.361666 1_3:-64461443 Msa0133180:CDS
ACACAAACAAGTAGGAGTTT+TGG 0.366649 1_3:+64457351 None:intergenic
GCTGAAACAATTCCAATTGT+AGG 0.367850 1_3:+64461195 None:intergenic
CAAGCATCAAATATCATATC+TGG 0.370925 1_3:-64460354 Msa0133180:CDS
ACACAGGTGAAGTGTATAAC+TGG 0.374089 1_3:-64457017 Msa0133180:three_prime_UTR
AGAGCTCCAATGAACATCAT+AGG 0.376728 1_3:+64461437 None:intergenic
CATTGCAGCTTGGAAACCTT+TGG 0.378460 1_3:+64458049 None:intergenic
GGCGAGATTGTAAGAATCTA+AGG 0.379884 1_3:+64458407 None:intergenic
ATTGAGCTTGATTTCTAGCT+TGG 0.383594 1_3:+64461623 None:intergenic
TTTCCTGAGACGTCCATTCC+TGG 0.389736 1_3:-64461223 Msa0133180:CDS
GGTGTCTATCAATGAGGAAT+AGG 0.392092 1_3:+64458428 None:intergenic
ATCAAATATCATATCTGGCT+TGG 0.394614 1_3:-64460349 Msa0133180:CDS
ATACTATAACCCCACAAGTT+TGG 0.395633 1_3:-64458086 Msa0133180:three_prime_UTR
CATATGGAGGTGAGCAAAAC+TGG 0.398421 1_3:+64461104 None:intergenic
GTAGATGGGAAGCGAAGTTC+AGG 0.406799 1_3:-64460486 Msa0133180:intron
GAGGTTGAAATTCTTGTTGT+TGG 0.408231 1_3:+64457373 None:intergenic
TGAGTTGTTGAACCAGAAAC+AGG 0.415265 1_3:+64457285 None:intergenic
TCTTCCATTCTACGTCTTGT+TGG 0.419851 1_3:-64460391 Msa0133180:CDS
TATTGTCTTACTAGGATCCT+TGG 0.429043 1_3:+64458324 None:intergenic
TTCCTGGTCATGCCTACAAT+TGG 0.433473 1_3:-64461207 Msa0133180:CDS
GTGTTTATCTCCATCTTCAT+CGG 0.438108 1_3:-64461409 Msa0133180:CDS
CATCTTAATGTCTCGGTTGA+AGG 0.443438 1_3:-64457912 Msa0133180:three_prime_UTR
TGTTTATCTCCATCTTCATC+GGG 0.445261 1_3:-64461408 Msa0133180:CDS
CAAGCCACAACCAGTTATTT+GGG 0.445497 1_3:+64457124 None:intergenic
CATGACCCTGGTGATCTTGT+TGG 0.446030 1_3:+64456862 None:intergenic
GAAATTCTGTTTGAGTGTAA+AGG 0.455524 1_3:-64456589 Msa0133180:three_prime_UTR
TTGAGCTTGATTTCTAGCTT+GGG 0.460467 1_3:+64461624 None:intergenic
TTTGGATCATCTTAATGTCT+CGG 0.460525 1_3:-64457919 Msa0133180:three_prime_UTR
AATTGGAATTGTTTCAGCTA+TGG 0.460958 1_3:-64461190 Msa0133180:CDS
TACATCTTACGCCTTATTCG+TGG 0.460998 1_3:+64458553 None:intergenic
ATGATGTTCATTGGAGCTCT+AGG 0.465216 1_3:-64461434 Msa0133180:CDS
TTTATGAACACCAAACTTGT+GGG 0.465358 1_3:+64458076 None:intergenic
TCAAATATCATATCTGGCTT+GGG 0.467506 1_3:-64460348 Msa0133180:CDS
GGGCCTAATACAGCTGAGAT+AGG 0.482185 1_3:+64457144 None:intergenic
CCTGGTGATCTTGTTGGTGT+TGG 0.482209 1_3:+64456868 None:intergenic
TGCAATCTCTCCAGCTACAT+TGG 0.482582 1_3:+64458612 None:intergenic
CCTCACTTACTCTTGAGATC+AGG 0.482923 1_3:+64456757 None:intergenic
GTCTCGGTTGAAGGACCCTA+TGG 0.485389 1_3:-64457903 Msa0133180:three_prime_UTR
TGACCAGGAATGGACGTCTC+AGG 0.492465 1_3:+64461220 None:intergenic
TTGTGCAGAATGTGGTCCAT+AGG 0.494669 1_3:+64457887 None:intergenic
GATGTTGGAGTTATGGTTTG+TGG 0.495679 1_3:-64456562 Msa0133180:three_prime_UTR
TACATGTGCATGATTGCTCC+TGG 0.499735 1_3:-64458457 Msa0133180:three_prime_UTR
TACAATCTCGCCAACATGCT+CGG 0.502728 1_3:-64458396 Msa0133180:three_prime_UTR
GAGACCAACAAGACGTAGAA+TGG 0.503751 1_3:+64460387 None:intergenic
CCAAATAACTGGTTGTGGCT+TGG 0.505006 1_3:-64457123 Msa0133180:three_prime_UTR
AACTAGAAGACACCGTAAAA+GGG 0.507134 1_3:+64458023 None:intergenic
ACATATGTATCCAATGTAGC+TGG 0.511036 1_3:-64458622 Msa0133180:CDS
CGCCTTCTTTGTGCATATGG+AGG 0.515718 1_3:+64461091 None:intergenic
TCACGGATTATAGATATGAA+TGG 0.518337 1_3:+64457411 None:intergenic
GAGTGTAAAGGCAAAGATGT+TGG 0.518341 1_3:-64456577 Msa0133180:three_prime_UTR
ATTGTAGGCATGACCAGGAA+TGG 0.518429 1_3:+64461210 None:intergenic
TCATAGGGAATGTGAAAAGC+AGG 0.518452 1_3:+64461453 None:intergenic
ATTTATGAACACCAAACTTG+TGG 0.522214 1_3:+64458075 None:intergenic
GGCTTTGAAATATGAGATCA+CGG 0.523890 1_3:+64457394 None:intergenic
TAGGCCCAAATAACTGGTTG+TGG 0.527436 1_3:-64457128 Msa0133180:three_prime_UTR
GAGCTCCAATGAACATCATA+GGG 0.528983 1_3:+64461438 None:intergenic
GGTGTTCATAAATGTTCCAA+AGG 0.529380 1_3:-64458065 Msa0133180:three_prime_UTR
AGGTCACCAATTAAAACTGA+TGG 0.530758 1_3:+64456468 None:intergenic
TTACATAGGAAACATATGTT+GGG 0.532430 1_3:-64460443 Msa0133180:CDS
GTGATGGTGAGTGGTGGAAG+TGG 0.534156 1_3:-64457441 Msa0133180:three_prime_UTR
ACATTGCCTAATTATAACAT+AGG 0.534790 1_3:+64456370 None:intergenic
GTTACATAGGAAACATATGT+TGG 0.535893 1_3:-64460444 Msa0133180:CDS
CCAACACCAACAAGATCACC+AGG 0.536301 1_3:-64456868 Msa0133180:three_prime_UTR
TGTGCAGAATGTGGTCCATA+GGG 0.536839 1_3:+64457888 None:intergenic
CACCTCCATATGCACAAAGA+AGG 0.544934 1_3:-64461093 Msa0133180:CDS
ACTGGACTTACAAGGTTATG+TGG 0.547151 1_3:-64456999 Msa0133180:three_prime_UTR
TTATTCTATGCCATCCATGT+TGG 0.547960 1_3:-64458487 Msa0133180:three_prime_UTR
AGATATAGAGAATGTAGAGA+TGG 0.551790 1_3:+64458509 None:intergenic
CCTTGGAGAAGTTGAGCTCA+AGG 0.557986 1_3:+64458341 None:intergenic
CTGATAGTAACCGAGCATGT+TGG 0.558645 1_3:+64458386 None:intergenic
AAAAGGGTGCCATTGCAGCT+TGG 0.560802 1_3:+64458039 None:intergenic
CAAAGGTTTCCAAGCTGCAA+TGG 0.560929 1_3:-64458048 Msa0133180:three_prime_UTR
CAACAAGATCACCAGGGTCA+TGG 0.560968 1_3:-64456861 Msa0133180:three_prime_UTR
CTTAGAAATTGTGCAGAATG+TGG 0.565118 1_3:+64457879 None:intergenic
TCTACATACTTCAGAGAGCA+AGG 0.565212 1_3:-64461600 Msa0133180:intron
TGATTTCCCAGGCGTTAGAG+TGG 0.569832 1_3:-64458651 Msa0133180:intron
TTCCAATTGTAGGCATGACC+AGG 0.569930 1_3:+64461205 None:intergenic
AGTGTATAACTGGACTTACA+AGG 0.572164 1_3:-64457007 Msa0133180:three_prime_UTR
TTGTTCTTTCCAGTAACAAG+AGG 0.575453 1_3:-64460415 Msa0133180:CDS
ATGTAAGCTTCGATTTGTAA+CGG 0.578008 1_3:+64457249 None:intergenic
TGATTGTTAATCAAATCAAA+CGG 0.579471 1_3:+64456176 None:intergenic
AATATACATGCAAAACATAG+AGG 0.581947 1_3:+64456302 None:intergenic
AAACGAATCAACCTTGTGGA+AGG 0.590519 1_3:+64461365 None:intergenic
TTGGATCTTGTTGCCCACAA+AGG 0.591496 1_3:-64461667 Msa0133180:CDS
CACAAAAGTTACCTTCCACA+AGG 0.596116 1_3:-64461376 Msa0133180:intron
ATGAGGAATAGGAAAATCCC+AGG 0.598597 1_3:+64458439 None:intergenic
AAATGATCCTTAGGAATGTG+TGG 0.600017 1_3:+64461721 None:intergenic
GTATTCAACTCCAACATGGA+TGG 0.603192 1_3:+64458477 None:intergenic
TGAAGAGCCACACATTCCTA+AGG 0.606681 1_3:-64461728 Msa0133180:CDS
CCTTGCACCAAAATGTACAT+TGG 0.609618 1_3:+64456780 None:intergenic
TATCCAATTGAAAATAACAC+AGG 0.610435 1_3:-64457033 Msa0133180:three_prime_UTR
GCACTAAAGATTGATGAGGA+AGG 0.616155 1_3:+64456809 None:intergenic
TGGAATGCTTGTTATCCACA+TGG 0.616270 1_3:+64458573 None:intergenic
CCTTGAGCTCAACTTCTCCA+AGG 0.626515 1_3:-64458341 Msa0133180:three_prime_UTR
GTTTAATAGCATTAGCCATG+TGG 0.627630 1_3:-64458588 Msa0133180:CDS
CAGATTGTGATGGTGAGTGG+TGG 0.628879 1_3:-64457447 Msa0133180:three_prime_UTR
TTATGAACACCAAACTTGTG+GGG 0.629351 1_3:+64458077 None:intergenic
CTTGGAGAAGTTGAGCTCAA+GGG 0.630131 1_3:+64458342 None:intergenic
AGGAAGCATAAGATCTAACA+TGG 0.631448 1_3:+64457305 None:intergenic
ATCTAAGGTGTCTATCAATG+AGG 0.634860 1_3:+64458422 None:intergenic
GAGTAACAATTCCTAAAAGG+AGG 0.636071 1_3:+64457067 None:intergenic
GAGCAGATTGTGATGGTGAG+TGG 0.648818 1_3:-64457450 Msa0133180:three_prime_UTR
ACATGTGCATGATTGCTCCT+GGG 0.659062 1_3:-64458456 Msa0133180:three_prime_UTR
GCTTGCACTAAAGATTGATG+AGG 0.661055 1_3:+64456805 None:intergenic
TTGAGCTCAAGGGCATCACA+AGG 0.661183 1_3:+64458352 None:intergenic
GAACCATAAATCCATGACCC+TGG 0.663108 1_3:+64456850 None:intergenic
CTGAGATAGGAGAATCTGAG+AGG 0.667792 1_3:+64457157 None:intergenic
ACATGTATTCAACTCCAACA+TGG 0.684245 1_3:+64458473 None:intergenic
CAGGCATGAGCAGATTGTGA+TGG 0.694392 1_3:-64457457 Msa0133180:three_prime_UTR
CAACACCAACAAGATCACCA+GGG 0.799066 1_3:-64456867 Msa0133180:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTGTTAATGATTTTA+GGG - chr1_3:64456591-64456610 Msa0133180:three_prime_UTR 10.0%
!! AACAAATTATTCTATTAAAT+TGG - chr1_3:64457129-64457148 Msa0133180:three_prime_UTR 10.0%
!!! TTAAACTTTATTTTTTCATT+CGG + chr1_3:64457270-64457289 None:intergenic 10.0%
!!! ATAATATTATTTTTTCATTC+AGG + chr1_3:64457536-64457555 None:intergenic 10.0%
!! AATATTATACCTTTATAATT+TGG - chr1_3:64457548-64457567 Msa0133180:intron 10.0%
!!! TTTGACAATTTTATTATTTT+TGG + chr1_3:64458271-64458290 None:intergenic 10.0%
!!! ACATTAATCTTTTTTTTTTA+GGG + chr1_3:64458313-64458332 None:intergenic 10.0%
!!! TACATTAATCTTTTTTTTTT+AGG + chr1_3:64458314-64458333 None:intergenic 10.0%
!!! AAAATAACACAAATTTTTTT+AGG - chr1_3:64458422-64458441 Msa0133180:three_prime_UTR 10.0%
!!! AAATAACACAAATTTTTTTA+GGG - chr1_3:64458423-64458442 Msa0133180:three_prime_UTR 10.0%
!! AAAAAATGAAAATATATGTA+AGG + chr1_3:64459123-64459142 None:intergenic 10.0%
!!! CATTAATTGTTAATGATTTT+AGG - chr1_3:64456590-64456609 Msa0133180:three_prime_UTR 15.0%
!!! TTAATTGTTAATGATTTTAG+GGG - chr1_3:64456592-64456611 Msa0133180:intron 15.0%
!! TCAAAGTAGTTAATTATTAA+AGG + chr1_3:64456763-64456782 None:intergenic 15.0%
!!! TAATAGAATAATTTGTTGTT+AGG + chr1_3:64457126-64457145 None:intergenic 15.0%
!! TATTCTATTAAATTGGAATT+TGG - chr1_3:64457136-64457155 Msa0133180:three_prime_UTR 15.0%
!! GATTCTATTAAATTTGAATT+TGG + chr1_3:64457425-64457444 None:intergenic 15.0%
!! ATGAAAAAATAAACTTTATC+CGG + chr1_3:64457473-64457492 None:intergenic 15.0%
!!! GATAAAGTTTATTTTTTCAT+CGG - chr1_3:64457473-64457492 Msa0133180:intron 15.0%
!! TAATCAATACCAAATTATAA+AGG + chr1_3:64457560-64457579 None:intergenic 15.0%
!!! TATAATTTGGTATTGATTAT+TGG - chr1_3:64457561-64457580 Msa0133180:intron 15.0%
!! ATAATAATCAATCTCTTAAT+CGG - chr1_3:64458195-64458214 Msa0133180:intron 15.0%
!!! AATACAATTATTCACTTTTT+GGG + chr1_3:64458242-64458261 None:intergenic 15.0%
!!! TAATACAATTATTCACTTTT+TGG + chr1_3:64458243-64458262 None:intergenic 15.0%
!!! AATAACACAAATTTTTTTAG+GGG - chr1_3:64458424-64458443 Msa0133180:three_prime_UTR 15.0%
!! ATTATTGCCAATAATTTATT+GGG + chr1_3:64458629-64458648 None:intergenic 15.0%
!! AATTATTGCCAATAATTTAT+TGG + chr1_3:64458630-64458649 None:intergenic 15.0%
!! ACATTGAAAAATTTATAGAA+AGG - chr1_3:64458916-64458935 Msa0133180:intron 15.0%
!!! TTTCGTTTTTTTTTTTTTTG+TGG - chr1_3:64459078-64459097 Msa0133180:intron 15.0%
!!! TAAAACGTTCTTTTTTTTAA+TGG - chr1_3:64459173-64459192 Msa0133180:intron 15.0%
!! TAAACAAAAAATGATAACTT+TGG + chr1_3:64459949-64459968 None:intergenic 15.0%
!! GTTTATAATGTGATAAAATA+AGG - chr1_3:64460372-64460391 Msa0133180:CDS 15.0%
!!! ATTTTTCTTTTGATGTTTCT+TGG - chr1_3:64456373-64456392 Msa0133180:three_prime_UTR 20.0%
!! AAAAGTTCATTAAGAATGTT+TGG + chr1_3:64457168-64457187 None:intergenic 20.0%
!! AAAAAATAAAGTTTAACTCG+AGG - chr1_3:64457274-64457293 Msa0133180:three_prime_UTR 20.0%
!! AAAAATAAAGTTTAACTCGA+GGG - chr1_3:64457275-64457294 Msa0133180:three_prime_UTR 20.0%
!! TGAATTGAATAATCATTGAT+TGG + chr1_3:64457226-64457245 None:intergenic 20.0%
!! AATCAATGATTATTCAATTC+AGG - chr1_3:64457334-64457353 Msa0133180:three_prime_UTR 20.0%
!!! ACTAAAGTACTTTAATCATT+CGG - chr1_3:64457362-64457381 Msa0133180:three_prime_UTR 20.0%
!!! TTTTAACGAACTTTTACTTA+TGG + chr1_3:64457388-64457407 None:intergenic 20.0%
!! AAAAGTTCGTTAAAATTGTT+TGG - chr1_3:64457393-64457412 Msa0133180:three_prime_UTR 20.0%
!!! CATAGGTTTTTTCATATATT+GGG - chr1_3:64457782-64457801 Msa0133180:intron 20.0%
!!! ATAGGTTTTTTCATATATTG+GGG - chr1_3:64457783-64457802 Msa0133180:intron 20.0%
!!! TTTTGTTTATGCATAATTTG+AGG - chr1_3:64457953-64457972 Msa0133180:three_prime_UTR 20.0%
!! ATGTGAAAATTTGAAAATGA+TGG + chr1_3:64458149-64458168 None:intergenic 20.0%
!! AATGTAAAAATCTCTAAACA+AGG - chr1_3:64458328-64458347 Msa0133180:intron 20.0%
!!! TTTTCTCAAAAATTTGAAGT+TGG - chr1_3:64458842-64458861 Msa0133180:intron 20.0%
!! TAGAAGCTCTTAAAATAAAA+AGG - chr1_3:64458881-64458900 Msa0133180:intron 20.0%
!! AGCTTAGAAAAAATTGAAAA+GGG - chr1_3:64458939-64458958 Msa0133180:intron 20.0%
!! TGAAAATATATGTAAGGTTA+GGG + chr1_3:64459117-64459136 None:intergenic 20.0%
!! ATGAAAATATATGTAAGGTT+AGG + chr1_3:64459118-64459137 None:intergenic 20.0%
!!! AAATTTTGTATTGTCTTACT+AGG + chr1_3:64459762-64459781 None:intergenic 20.0%
!! TAGTGTTACAATTAAAAATG+TGG - chr1_3:64460097-64460116 Msa0133180:intron 20.0%
!! AGTGTTACAATTAAAAATGT+GGG - chr1_3:64460098-64460117 Msa0133180:intron 20.0%
!! TCATATACTATGTATATGAA+GGG - chr1_3:64460235-64460254 Msa0133180:intron 20.0%
!!! TTTTAAAAACACAAACAAGT+AGG + chr1_3:64460735-64460754 None:intergenic 20.0%
!! AAAAACAAATCCAAACTATA+TGG - chr1_3:64460884-64460903 Msa0133180:intron 20.0%
!!! TTGTTTTAAACCATATAGTT+TGG + chr1_3:64460897-64460916 None:intergenic 20.0%
!!! TTTTATTGTTGTGTGTAAAT+TGG - chr1_3:64461371-64461390 Msa0133180:intron 20.0%
!! TTTATTGTTGTGTGTAAATT+GGG - chr1_3:64461372-64461391 Msa0133180:intron 20.0%
!!! AATTATTAAGTGCAACTTTT+GGG + chr1_3:64461810-64461829 None:intergenic 20.0%
!!! AAATTATTAAGTGCAACTTT+TGG + chr1_3:64461811-64461830 None:intergenic 20.0%
! TCAAAAGAAAAATGATCCTT+AGG + chr1_3:64456366-64456385 None:intergenic 25.0%
!! TAATTATTAAAGGCTAGCTA+GGG + chr1_3:64456753-64456772 None:intergenic 25.0%
!! TTAATTATTAAAGGCTAGCT+AGG + chr1_3:64456754-64456773 None:intergenic 25.0%
!!! ATATGTTTTTGTTTCAGTAC+TGG - chr1_3:64456808-64456827 Msa0133180:three_prime_UTR 25.0%
!!! TATGTTTTTGTTTCAGTACT+GGG - chr1_3:64456809-64456828 Msa0133180:three_prime_UTR 25.0%
!! ACTAAAGTACTCTAATCATT+CGG + chr1_3:64457199-64457218 None:intergenic 25.0%
! GATCAATGATTATTCAATTC+AGG + chr1_3:64457227-64457246 None:intergenic 25.0%
!!! ACTTTATTTTTTCATTCGGT+CGG + chr1_3:64457266-64457285 None:intergenic 25.0%
! CAAACTTTATTATAACTCTC+CGG - chr1_3:64457451-64457470 Msa0133180:three_prime_UTR 25.0%
!!! AAAGTTTATTTTTTCATCGG+AGG - chr1_3:64457476-64457495 Msa0133180:intron 25.0%
!!! AAGTTTATTTTTTCATCGGA+GGG - chr1_3:64457477-64457496 Msa0133180:intron 25.0%
! TTACATAGGAAACATATGTT+GGG - chr1_3:64457632-64457651 Msa0133180:intron 25.0%
! CCAATATATGAAAAAACCTA+TGG + chr1_3:64457784-64457803 None:intergenic 25.0%
!!! CCATAGGTTTTTTCATATAT+TGG - chr1_3:64457781-64457800 Msa0133180:intron 25.0%
!! TCTTTTTCCTTGATCAATTT+GGG + chr1_3:64457899-64457918 None:intergenic 25.0%
!! TTCTTTTTCCTTGATCAATT+TGG + chr1_3:64457900-64457919 None:intergenic 25.0%
! ATGTGCATTTACAAAGAAAA+CGG - chr1_3:64458482-64458501 Msa0133180:three_prime_UTR 25.0%
! AAGAAAACGGGATTAATTAA+TGG - chr1_3:64458495-64458514 Msa0133180:three_prime_UTR 25.0%
!!! CACTAGTTCATAGTTTTTTT+TGG - chr1_3:64458520-64458539 Msa0133180:three_prime_UTR 25.0%
! TCACTAGTTCATAGTTTAAA+GGG - chr1_3:64458547-64458566 Msa0133180:exon 25.0%
!! GAATTCTTCGAAGATTATTT+TGG + chr1_3:64458592-64458611 None:intergenic 25.0%
! GGCAATAATTAAGATTAAGA+TGG - chr1_3:64458640-64458659 Msa0133180:CDS 25.0%
! AAAATTATGTGAGACTTTGT+TGG + chr1_3:64458763-64458782 None:intergenic 25.0%
! GAGCTTAGAAAAAATTGAAA+AGG - chr1_3:64458938-64458957 Msa0133180:intron 25.0%
!!! GTTTTTTTTTTTTTTGTGGC+CGG - chr1_3:64459082-64459101 Msa0133180:intron 25.0%
!!! TTTTTTTTTTTTTTGTGGCC+GGG - chr1_3:64459083-64459102 Msa0133180:intron 25.0%
! GAAAATATATGTAAGGTTAG+GGG + chr1_3:64459116-64459135 None:intergenic 25.0%
! ATTTGATCGTAATATGTTGA+TGG - chr1_3:64459315-64459334 Msa0133180:intron 25.0%
! TAGATATATACATGCATGAT+TGG + chr1_3:64459395-64459414 None:intergenic 25.0%
!!! TACAAATATTTTGATTTCCC+AGG - chr1_3:64459413-64459432 Msa0133180:intron 25.0%
! TATAGTATAAACCTGAAGTT+AGG + chr1_3:64459977-64459996 None:intergenic 25.0%
!!! CACAATTTCTAAGGTAAATT+TGG - chr1_3:64460206-64460225 Msa0133180:intron 25.0%
! CTCATATACTATGTATATGA+AGG - chr1_3:64460234-64460253 Msa0133180:intron 25.0%
! ATAAGGATAAATTACTGTTG+CGG - chr1_3:64460389-64460408 Msa0133180:CDS 25.0%
! TATCCAATTGAAAATAACAC+AGG - chr1_3:64461042-64461061 Msa0133180:intron 25.0%
! GATTCTCCTATGTTATAATT+AGG - chr1_3:64461699-64461718 Msa0133180:CDS 25.0%
! ACATTGCCTAATTATAACAT+AGG + chr1_3:64461708-64461727 None:intergenic 25.0%
! AATATACATGCAAAACATAG+AGG + chr1_3:64461776-64461795 None:intergenic 25.0%
!! ATTATTAAGTGCAACTTTTG+GGG + chr1_3:64461809-64461828 None:intergenic 25.0%
! TTCTTTTGATGTTTCTTGGA+TGG - chr1_3:64456377-64456396 Msa0133180:three_prime_UTR 30.0%
!!! TTATTTTTTCCCGATGAAGA+TGG + chr1_3:64456679-64456698 None:intergenic 30.0%
!! ATGTTTTTGTTTCAGTACTG+GGG - chr1_3:64456810-64456829 Msa0133180:three_prime_UTR 30.0%
AATTGGAATTGTTTCAGCTA+TGG - chr1_3:64456885-64456904 Msa0133180:three_prime_UTR 30.0%
!! TGTTTGTTGCACTTTTGATA+TGG - chr1_3:64456926-64456945 Msa0133180:three_prime_UTR 30.0%
! TCGAGGGTTAATCTAAAATT+CGG - chr1_3:64457291-64457310 Msa0133180:three_prime_UTR 30.0%
!! TGATTATTGGTCTTTGTAGA+TGG - chr1_3:64457574-64457593 Msa0133180:intron 30.0%
!! GATTATTGGTCTTTGTAGAT+GGG - chr1_3:64457575-64457594 Msa0133180:intron 30.0%
!!! TTTTTGAGACTAGGTTACAT+AGG - chr1_3:64457618-64457637 Msa0133180:intron 30.0%
GTTACATAGGAAACATATGT+TGG - chr1_3:64457631-64457650 Msa0133180:intron 30.0%
CAAGCATCAAATATCATATC+TGG - chr1_3:64457721-64457740 Msa0133180:intron 30.0%
ATCAAATATCATATCTGGCT+TGG - chr1_3:64457726-64457745 Msa0133180:intron 30.0%
! TCAAATATCATATCTGGCTT+GGG - chr1_3:64457727-64457746 Msa0133180:intron 30.0%
AAATTACCCCAAATTGATCA+AGG - chr1_3:64457889-64457908 Msa0133180:three_prime_UTR 30.0%
! CTTTTTCCTTGATCAATTTG+GGG + chr1_3:64457898-64457917 None:intergenic 30.0%
TCTCATTCATATAGCCATAT+AGG - chr1_3:64457928-64457947 Msa0133180:three_prime_UTR 30.0%
GCATAAACAAAAGACCTATA+TGG + chr1_3:64457945-64457964 None:intergenic 30.0%
! CATAATTTGAGGTCCTATAA+TGG - chr1_3:64457964-64457983 Msa0133180:three_prime_UTR 30.0%
ATATATACTGTCCCTTCATT+TGG - chr1_3:64458026-64458045 Msa0133180:three_prime_UTR 30.0%
ATCAATGTTGTCCAAATGAA+GGG + chr1_3:64458040-64458059 None:intergenic 30.0%
GGAGAGAAGATAAAATTCTA+GGG + chr1_3:64458354-64458373 None:intergenic 30.0%
TGGAGAGAAGATAAAATTCT+AGG + chr1_3:64458355-64458374 None:intergenic 30.0%
TTTATCTTCTCTCCATCAAA+AGG - chr1_3:64458360-64458379 Msa0133180:three_prime_UTR 30.0%
TGTGCATTTACAAAGAAAAC+GGG - chr1_3:64458483-64458502 Msa0133180:three_prime_UTR 30.0%
CTCACTAGTTCATAGTTTAA+AGG - chr1_3:64458546-64458565 Msa0133180:exon 30.0%
AGTTCATAGTTTAAAGGGAT+TGG - chr1_3:64458552-64458571 Msa0133180:exon 30.0%
TTCGAAGAATTCATTCATGT+TGG - chr1_3:64458600-64458619 Msa0133180:CDS 30.0%
TCGAAGAATTCATTCATGTT+GGG - chr1_3:64458601-64458620 Msa0133180:CDS 30.0%
! TAGTTTGTAACTATGCTCTT+TGG + chr1_3:64458683-64458702 None:intergenic 30.0%
TATCATATGAGTTGTACTTC+CGG - chr1_3:64458782-64458801 Msa0133180:intron 30.0%
!!! TTTTTTTTTTTTTGTGGCCG+GGG - chr1_3:64459084-64459103 Msa0133180:intron 30.0%
AGATATAGAGAATGTAGAGA+TGG + chr1_3:64459569-64459588 None:intergenic 30.0%
TATGCTTCAATACAATGTGT+TGG + chr1_3:64459820-64459839 None:intergenic 30.0%
!! TGTTTACTTTTCCTAACTTC+AGG - chr1_3:64459963-64459982 Msa0133180:intron 30.0%
TTTATGAACACCAAACTTGT+GGG + chr1_3:64460002-64460021 None:intergenic 30.0%
ATTTATGAACACCAAACTTG+TGG + chr1_3:64460003-64460022 None:intergenic 30.0%
AGAACTTTCTTCTTCATCTT+TGG - chr1_3:64460138-64460157 Msa0133180:intron 30.0%
TTTGGATCATCTTAATGTCT+CGG - chr1_3:64460156-64460175 Msa0133180:intron 30.0%
GATTTCACAGATATGACTAT+GGG + chr1_3:64460304-64460323 None:intergenic 30.0%
AGATTTCACAGATATGACTA+TGG + chr1_3:64460305-64460324 None:intergenic 30.0%
ATAGTCATATCTGTGAAATC+TGG - chr1_3:64460304-64460323 Msa0133180:intron 30.0%
! GGACTGCAATTTAAAACTAT+TGG - chr1_3:64460410-64460429 Msa0133180:CDS 30.0%
! CAATTTAAAACTATTGGAGC+AGG - chr1_3:64460416-64460435 Msa0133180:CDS 30.0%
GTCACATTGTTCATAAATCT+AGG - chr1_3:64460486-64460505 Msa0133180:intron 30.0%
AACCGAAATCTAAAGAAAGA+CGG + chr1_3:64460535-64460554 None:intergenic 30.0%
!! CATCATTCTATCTCTAAAAC+AGG - chr1_3:64460599-64460618 Msa0133180:intron 30.0%
! TCACGGATTATAGATATGAA+TGG + chr1_3:64460667-64460686 None:intergenic 30.0%
! ATGTAAGCTTCGATTTGTAA+CGG + chr1_3:64460829-64460848 None:intergenic 30.0%
!!! TGTTTTTGAGTATCTCTTGA+AGG + chr1_3:64460871-64460890 None:intergenic 30.0%
AACGAGTAACAATTCCTAAA+AGG + chr1_3:64461014-64461033 None:intergenic 30.0%
!!! TCACCTGTGTTATTTTCAAT+TGG + chr1_3:64461048-64461067 None:intergenic 30.0%
GTTCTAGTGTTGTATTTCTT+TGG - chr1_3:64461133-64461152 Msa0133180:CDS 30.0%
TACCATGTCTATTGTATCAA+TGG - chr1_3:64461431-64461450 Msa0133180:CDS 30.0%
ACCATGTCTATTGTATCAAT+GGG - chr1_3:64461432-64461451 Msa0133180:CDS 30.0%
GAAATTCTGTTTGAGTGTAA+AGG - chr1_3:64461486-64461505 Msa0133180:intron 30.0%
!! TTGAGTCCATCAGTTTTAAT+TGG - chr1_3:64461601-64461620 Msa0133180:CDS 30.0%
!! TACATTTTAGAGATGGTAGA+AGG + chr1_3:64461673-64461692 None:intergenic 30.0%
!! CAACATGTACATTTTAGAGA+TGG + chr1_3:64461680-64461699 None:intergenic 30.0%
TAGAAAAGTCAGACACCTTA+GGG + chr1_3:64456225-64456244 None:intergenic 35.0%
ATAGAAAAGTCAGACACCTT+AGG + chr1_3:64456226-64456245 None:intergenic 35.0%
AAATGATCCTTAGGAATGTG+TGG + chr1_3:64456357-64456376 None:intergenic 35.0%
!! GTGTTTTTGTAGACCTTTGT+GGG + chr1_3:64456424-64456443 None:intergenic 35.0%
!! TGTGTTTTTGTAGACCTTTG+TGG + chr1_3:64456425-64456444 None:intergenic 35.0%
CAAAGGTCTACAAAAACACA+TGG - chr1_3:64456425-64456444 Msa0133180:three_prime_UTR 35.0%
!! TTGAGCTTGATTTCTAGCTT+GGG + chr1_3:64456454-64456473 None:intergenic 35.0%
!! ATTGAGCTTGATTTCTAGCT+TGG + chr1_3:64456455-64456474 None:intergenic 35.0%
ACATTCCCTATGATGTTCAT+TGG - chr1_3:64456632-64456651 Msa0133180:intron 35.0%
GTGTTTATCTCCATCTTCAT+CGG - chr1_3:64456666-64456685 Msa0133180:intron 35.0%
TGTTTATCTCCATCTTCATC+GGG - chr1_3:64456667-64456686 Msa0133180:intron 35.0%
TTAGAAACGAATCAACCTTG+TGG + chr1_3:64456717-64456736 None:intergenic 35.0%
GCTGAAACAATTCCAATTGT+AGG + chr1_3:64456883-64456902 None:intergenic 35.0%
! GAACTCCAGACTCTAAAAAT+CGG + chr1_3:64457077-64457096 None:intergenic 35.0%
!!! TATTTTTTCATTCGGTCGGA+AGG + chr1_3:64457262-64457281 None:intergenic 35.0%
! GGGTTAATCTAAAATTCGGT+CGG - chr1_3:64457295-64457314 Msa0133180:three_prime_UTR 35.0%
! TAATCTAAAATTCGGTCGGA+AGG - chr1_3:64457299-64457318 Msa0133180:three_prime_UTR 35.0%
!!! AGGAGTGTATTTTTGAGACT+AGG - chr1_3:64457609-64457628 Msa0133180:intron 35.0%
TTGTTCTTTCCAGTAACAAG+AGG - chr1_3:64457660-64457679 Msa0133180:intron 35.0%
ACATACCTCAACCATTTGAT+TGG + chr1_3:64457814-64457833 None:intergenic 35.0%
CATCAATGTTGTCCAAATGA+AGG + chr1_3:64458041-64458060 None:intergenic 35.0%
GGCCATAAAATCTCTTACTA+CGG - chr1_3:64458216-64458235 Msa0133180:intron 35.0%
! TGTAAAACGAGTCCTTTTGA+TGG + chr1_3:64458375-64458394 None:intergenic 35.0%
CGAAGAATTCATTCATGTTG+GGG - chr1_3:64458602-64458621 Msa0133180:CDS 35.0%
TTGGGGACCCAATAAATTAT+TGG - chr1_3:64458619-64458638 Msa0133180:CDS 35.0%
ACAAACTAACACACACTAAG+TGG - chr1_3:64458695-64458714 Msa0133180:intron 35.0%
ATCATATGAGTTGTACTTCC+GGG - chr1_3:64458783-64458802 Msa0133180:intron 35.0%
TCTAATGATCTAGCATTTCG+TGG + chr1_3:64459241-64459260 None:intergenic 35.0%
ACATATGTATCCAATGTAGC+TGG - chr1_3:64459453-64459472 Msa0133180:intron 35.0%
GTTTAATAGCATTAGCCATG+TGG - chr1_3:64459487-64459506 Msa0133180:intron 35.0%
TAACAAGCATTCCACGAATA+AGG - chr1_3:64459511-64459530 Msa0133180:intron 35.0%
TTATTCTATGCCATCCATGT+TGG - chr1_3:64459588-64459607 Msa0133180:intron 35.0%
ACATGTATTCAACTCCAACA+TGG + chr1_3:64459605-64459624 None:intergenic 35.0%
! ATCTAAGGTGTCTATCAATG+AGG + chr1_3:64459656-64459675 None:intergenic 35.0%
TATTGTCTTACTAGGATCCT+TGG + chr1_3:64459754-64459773 None:intergenic 35.0%
TGAAGCATATGTCTAGTATC+CGG - chr1_3:64459831-64459850 Msa0133180:intron 35.0%
ATACTATAACCCCACAAGTT+TGG - chr1_3:64459989-64460008 Msa0133180:intron 35.0%
TTATGAACACCAAACTTGTG+GGG + chr1_3:64460001-64460020 None:intergenic 35.0%
GGTGTTCATAAATGTTCCAA+AGG - chr1_3:64460010-64460029 Msa0133180:intron 35.0%
AACTAGAAGACACCGTAAAA+GGG + chr1_3:64460055-64460074 None:intergenic 35.0%
! GGTGTCTTCTAGTTGTAATT+TGG - chr1_3:64460061-64460080 Msa0133180:intron 35.0%
CAATTAAAAATGTGGGAAGC+TGG - chr1_3:64460105-64460124 Msa0133180:intron 35.0%
CTTAGAAATTGTGCAGAATG+TGG + chr1_3:64460199-64460218 None:intergenic 35.0%
CACATTCTGCACAATTTCTA+AGG - chr1_3:64460197-64460216 Msa0133180:intron 35.0%
ATCATGTTCCTTTGAGTACA+TGG - chr1_3:64460278-64460297 Msa0133180:intron 35.0%
! TTTAAAACTATTGGAGCAGG+CGG - chr1_3:64460419-64460438 Msa0133180:CDS 35.0%
AACAATGTGACTACATTCCT+AGG + chr1_3:64460477-64460496 None:intergenic 35.0%
CTCCGTCTTTCTTTAGATTT+CGG - chr1_3:64460530-64460549 Msa0133180:intron 35.0%
!! GGCTTTGAAATATGAGATCA+CGG + chr1_3:64460684-64460703 None:intergenic 35.0%
! GAGGTTGAAATTCTTGTTGT+TGG + chr1_3:64460705-64460724 None:intergenic 35.0%
! ACACAAACAAGTAGGAGTTT+TGG + chr1_3:64460727-64460746 None:intergenic 35.0%
! AGGAAGCATAAGATCTAACA+TGG + chr1_3:64460773-64460792 None:intergenic 35.0%
! ATCATGTTTCTCCTCCTTTT+AGG - chr1_3:64460997-64461016 Msa0133180:intron 35.0%
GAGTAACAATTCCTAAAAGG+AGG + chr1_3:64461011-64461030 None:intergenic 35.0%
AGTGTATAACTGGACTTACA+AGG - chr1_3:64461068-64461087 Msa0133180:intron 35.0%
! CAAGCTACCAATGTACATTT+TGG - chr1_3:64461288-64461307 Msa0133180:intron 35.0%
TCCCATTGATACAATAGACA+TGG + chr1_3:64461436-64461455 None:intergenic 35.0%
! ACTTCGTGTCTCAATTTTCT+TGG + chr1_3:64461540-64461559 None:intergenic 35.0%
! TAGAATTTGTGCTTCTGGTT+TGG - chr1_3:64461563-64461582 Msa0133180:intron 35.0%
AGGTCACCAATTAAAACTGA+TGG + chr1_3:64461610-64461629 None:intergenic 35.0%
GTACAGTGATGCAACATTAT+AGG + chr1_3:64461630-64461649 None:intergenic 35.0%
TTCTTGGATGGCTAACAGTT+TGG - chr1_3:64456389-64456408 Msa0133180:three_prime_UTR 40.0%
TCTACATACTTCAGAGAGCA+AGG - chr1_3:64456475-64456494 Msa0133180:three_prime_UTR 40.0%
ATACTTCAGAGAGCAAGGTT+AGG - chr1_3:64456480-64456499 Msa0133180:three_prime_UTR 40.0%
TCATAGGGAATGTGAAAAGC+AGG + chr1_3:64456625-64456644 None:intergenic 40.0%
GAGCTCCAATGAACATCATA+GGG + chr1_3:64456640-64456659 None:intergenic 40.0%
AGAGCTCCAATGAACATCAT+AGG + chr1_3:64456641-64456660 None:intergenic 40.0%
ATGATGTTCATTGGAGCTCT+AGG - chr1_3:64456641-64456660 Msa0133180:intron 40.0%
CACAAAAGTTACCTTCCACA+AGG - chr1_3:64456699-64456718 Msa0133180:intron 40.0%
AAACGAATCAACCTTGTGGA+AGG + chr1_3:64456713-64456732 None:intergenic 40.0%
! TCCAGACTCTAAAAATCGGA+GGG + chr1_3:64457073-64457092 None:intergenic 40.0%
ATGGAAGAACCTCTTGTTAC+TGG + chr1_3:64457672-64457691 None:intergenic 40.0%
TCTTCCATTCTACGTCTTGT+TGG - chr1_3:64457684-64457703 Msa0133180:intron 40.0%
CATCACCAATCAAATGGTTG+AGG - chr1_3:64457806-64457825 Msa0133180:intron 40.0%
! TTTGAGGTCCTATAATGGCA+AGG - chr1_3:64457969-64457988 Msa0133180:three_prime_UTR 40.0%
CAGTAGATCCTTGCCATTAT+AGG + chr1_3:64457980-64457999 None:intergenic 40.0%
ATCTACTGCCTCTTTCTGAT+TGG - chr1_3:64457992-64458011 Msa0133180:three_prime_UTR 40.0%
GCTCAATTCCAATCAGAAAG+AGG + chr1_3:64458003-64458022 None:intergenic 40.0%
! GGCCGTAGTAAGAGATTTTA+TGG + chr1_3:64458221-64458240 None:intergenic 40.0%
! TGAGACTTTGTTGGTTGCTA+AGG + chr1_3:64458754-64458773 None:intergenic 40.0%
TTGACCAAACACTAATGACC+CGG + chr1_3:64458804-64458823 None:intergenic 40.0%
ATTGCCAAGAATCGAAGTGT+AGG + chr1_3:64459028-64459047 None:intergenic 40.0%
!! TGGAATGCTTGTTATCCACA+TGG + chr1_3:64459505-64459524 None:intergenic 40.0%
! TACATCTTACGCCTTATTCG+TGG + chr1_3:64459525-64459544 None:intergenic 40.0%
GTATTCAACTCCAACATGGA+TGG + chr1_3:64459601-64459620 None:intergenic 40.0%
ATGAGGAATAGGAAAATCCC+AGG + chr1_3:64459639-64459658 None:intergenic 40.0%
GGTGTCTATCAATGAGGAAT+AGG + chr1_3:64459650-64459669 None:intergenic 40.0%
GGCGAGATTGTAAGAATCTA+AGG + chr1_3:64459671-64459690 None:intergenic 40.0%
CAACTAGAAGACACCGTAAA+AGG + chr1_3:64460056-64460075 None:intergenic 40.0%
CATCTTAATGTCTCGGTTGA+AGG - chr1_3:64460163-64460182 Msa0133180:intron 40.0%
GACGTTCATAGTTAAACTGC+TGG - chr1_3:64460330-64460349 Msa0133180:CDS 40.0%
!! CAAACAAGTAGGAGTTTTGG+AGG + chr1_3:64460724-64460743 None:intergenic 40.0%
GATCTTATGCTTCCTGTTTC+TGG - chr1_3:64460778-64460797 Msa0133180:intron 40.0%
TGAGTTGTTGAACCAGAAAC+AGG + chr1_3:64460793-64460812 None:intergenic 40.0%
TCTCCTATCTCAGCTGTATT+AGG - chr1_3:64460928-64460947 Msa0133180:intron 40.0%
CTGTATTAGGCCCAAATAAC+TGG - chr1_3:64460941-64460960 Msa0133180:intron 40.0%
CAAGCCACAACCAGTTATTT+GGG + chr1_3:64460954-64460973 None:intergenic 40.0%
ACACAGGTGAAGTGTATAAC+TGG - chr1_3:64461058-64461077 Msa0133180:intron 40.0%
ACTGGACTTACAAGGTTATG+TGG - chr1_3:64461076-64461095 Msa0133180:intron 40.0%
GCACTAAAGATTGATGAGGA+AGG + chr1_3:64461269-64461288 None:intergenic 40.0%
GCTTGCACTAAAGATTGATG+AGG + chr1_3:64461273-64461292 None:intergenic 40.0%
CCTTGCACCAAAATGTACAT+TGG + chr1_3:64461298-64461317 None:intergenic 40.0%
!! CCAATGTACATTTTGGTGCA+AGG - chr1_3:64461295-64461314 Msa0133180:intron 40.0%
GAGTGTAAAGGCAAAGATGT+TGG - chr1_3:64461498-64461517 Msa0133180:intron 40.0%
AGGCAAAGATGTTGGAGTTA+TGG - chr1_3:64461506-64461525 Msa0133180:intron 40.0%
GATGTTGGAGTTATGGTTTG+TGG - chr1_3:64461513-64461532 Msa0133180:intron 40.0%
GTTGCTAGAATTTGTGCTTC+TGG - chr1_3:64461558-64461577 Msa0133180:intron 40.0%
TGAAGAGCCACACATTCCTA+AGG - chr1_3:64456347-64456366 Msa0133180:three_prime_UTR 45.0%
TTGGATCTTGTTGCCCACAA+AGG - chr1_3:64456408-64456427 Msa0133180:three_prime_UTR 45.0%
ATTGTAGGCATGACCAGGAA+TGG + chr1_3:64456868-64456887 None:intergenic 45.0%
TTCCTGGTCATGCCTACAAT+TGG - chr1_3:64456868-64456887 Msa0133180:three_prime_UTR 45.0%
TTCCAATTGTAGGCATGACC+AGG + chr1_3:64456873-64456892 None:intergenic 45.0%
CATATGGAGGTGAGCAAAAC+TGG + chr1_3:64456974-64456993 None:intergenic 45.0%
CACCTCCATATGCACAAAGA+AGG - chr1_3:64456982-64457001 Msa0133180:three_prime_UTR 45.0%
TCTCGCCTTCTTTGTGCATA+TGG + chr1_3:64456990-64457009 None:intergenic 45.0%
!!! ACCCTCCGATTTTTAGAGTC+TGG - chr1_3:64457069-64457088 Msa0133180:three_prime_UTR 45.0%
! CTCCAGACTCTAAAAATCGG+AGG + chr1_3:64457074-64457093 None:intergenic 45.0%
GAGACCAACAAGACGTAGAA+TGG + chr1_3:64457691-64457710 None:intergenic 45.0%
!! CTGGCTTGGGCAATTATCTA+TGG - chr1_3:64457740-64457759 Msa0133180:intron 45.0%
! CTTTTTGCTGCACACACCAT+AGG - chr1_3:64457765-64457784 Msa0133180:intron 45.0%
! TTGGGGCATCACCAATCAAA+TGG - chr1_3:64457800-64457819 Msa0133180:intron 45.0%
!! TTTAAAGGGATTGGCTCGAG+TGG - chr1_3:64458561-64458580 Msa0133180:CDS 45.0%
ACACACTAAGTGGAGAGAAG+AGG - chr1_3:64458705-64458724 Msa0133180:intron 45.0%
! TGGAGAGAAGAGGTATACTG+TGG - chr1_3:64458715-64458734 Msa0133180:intron 45.0%
ACTTCCGGGTCATTAGTGTT+TGG - chr1_3:64458797-64458816 Msa0133180:intron 45.0%
ACAGCCTACACTTCGATTCT+TGG - chr1_3:64459021-64459040 Msa0133180:intron 45.0%
GATCTAGCATTTCGTGGCTA+TGG + chr1_3:64459235-64459254 None:intergenic 45.0%
TGCAATCTCTCCAGCTACAT+TGG + chr1_3:64459466-64459485 None:intergenic 45.0%
TACATGTGCATGATTGCTCC+TGG - chr1_3:64459618-64459637 Msa0133180:intron 45.0%
ACATGTGCATGATTGCTCCT+GGG - chr1_3:64459619-64459638 Msa0133180:intron 45.0%
TACAATCTCGCCAACATGCT+CGG - chr1_3:64459679-64459698 Msa0133180:intron 45.0%
CTGATAGTAACCGAGCATGT+TGG + chr1_3:64459692-64459711 None:intergenic 45.0%
!! CAAGGGCATCACAAGGTAAA+AGG + chr1_3:64459719-64459738 None:intergenic 45.0%
CTTGGAGAAGTTGAGCTCAA+GGG + chr1_3:64459736-64459755 None:intergenic 45.0%
GTTAGAGTCGTGTCAATGTC+CGG + chr1_3:64459853-64459872 None:intergenic 45.0%
CATTGCAGCTTGGAAACCTT+TGG + chr1_3:64460029-64460048 None:intergenic 45.0%
CAAAGGTTTCCAAGCTGCAA+TGG - chr1_3:64460027-64460046 Msa0133180:intron 45.0%
TGTGCAGAATGTGGTCCATA+GGG + chr1_3:64460190-64460209 None:intergenic 45.0%
TTGTGCAGAATGTGGTCCAT+AGG + chr1_3:64460191-64460210 None:intergenic 45.0%
ACTATGGGCCATGTACTCAA+AGG + chr1_3:64460289-64460308 None:intergenic 45.0%
! ACTGCTGGTTGTCTTTATGC+TGG - chr1_3:64460345-64460364 Msa0133180:CDS 45.0%
CTGAGATAGGAGAATCTGAG+AGG + chr1_3:64460921-64460940 None:intergenic 45.0%
TAGGCCCAAATAACTGGTTG+TGG - chr1_3:64460947-64460966 Msa0133180:intron 45.0%
CCAAGCCACAACCAGTTATT+TGG + chr1_3:64460955-64460974 None:intergenic 45.0%
CCAAATAACTGGTTGTGGCT+TGG - chr1_3:64460952-64460971 Msa0133180:intron 45.0%
CAACACCAACAAGATCACCA+GGG - chr1_3:64461208-64461227 Msa0133180:CDS 45.0%
TCACCAGGGTCATGGATTTA+TGG - chr1_3:64461222-64461241 Msa0133180:CDS 45.0%
GAACCATAAATCCATGACCC+TGG + chr1_3:64461228-64461247 None:intergenic 45.0%
CCTCACTTACTCTTGAGATC+AGG + chr1_3:64461321-64461340 None:intergenic 45.0%
CCTGATCTCAAGAGTAAGTG+AGG - chr1_3:64461318-64461337 Msa0133180:intron 45.0%
ATCTCAAGAGTAAGTGAGGC+AGG - chr1_3:64461322-64461341 Msa0133180:intron 45.0%
TCTCAAGAGTAAGTGAGGCA+GGG - chr1_3:64461323-64461342 Msa0133180:intron 45.0%
!!! TATATTTTCATTTTTTTTAA+TGG - chr1_3:64459127-64459146 Msa0133180:intron 5.0%
AAAGTCAGACACCTTAGGGC+TGG + chr1_3:64456221-64456240 None:intergenic 50.0%
TTTCCTGAGACGTCCATTCC+TGG - chr1_3:64456852-64456871 Msa0133180:three_prime_UTR 50.0%
CGCCTTCTTTGTGCATATGG+AGG + chr1_3:64456987-64457006 None:intergenic 50.0%
GTAGATGGGAAGCGAAGTTC+AGG - chr1_3:64457589-64457608 Msa0133180:intron 50.0%
AAGGTTAGGGGTTCAAACCC+CGG + chr1_3:64459104-64459123 None:intergenic 50.0%
TGATTTCCCAGGCGTTAGAG+TGG - chr1_3:64459424-64459443 Msa0133180:intron 50.0%
!! TTGAGCTCAAGGGCATCACA+AGG + chr1_3:64459726-64459745 None:intergenic 50.0%
CCTTGGAGAAGTTGAGCTCA+AGG + chr1_3:64459737-64459756 None:intergenic 50.0%
CCTTGAGCTCAACTTCTCCA+AGG - chr1_3:64459734-64459753 Msa0133180:intron 50.0%
!! AAAAGGGTGCCATTGCAGCT+TGG + chr1_3:64460039-64460058 None:intergenic 50.0%
! GCTGCAATGGCACCCTTTTA+CGG - chr1_3:64460040-64460059 Msa0133180:intron 50.0%
CTACATTCCTAGGAGCAGAG+CGG + chr1_3:64460467-64460486 None:intergenic 50.0%
CAGGCATGAGCAGATTGTGA+TGG - chr1_3:64460618-64460637 Msa0133180:intron 50.0%
! GAGCAGATTGTGATGGTGAG+TGG - chr1_3:64460625-64460644 Msa0133180:intron 50.0%
! CAGATTGTGATGGTGAGTGG+TGG - chr1_3:64460628-64460647 Msa0133180:intron 50.0%
GGGCCTAATACAGCTGAGAT+AGG + chr1_3:64460934-64460953 None:intergenic 50.0%
CCTGGTGATCTTGTTGGTGT+TGG + chr1_3:64461210-64461229 None:intergenic 50.0%
CCAACACCAACAAGATCACC+AGG - chr1_3:64461207-64461226 Msa0133180:CDS 50.0%
CATGACCCTGGTGATCTTGT+TGG + chr1_3:64461216-64461235 None:intergenic 50.0%
CAACAAGATCACCAGGGTCA+TGG - chr1_3:64461214-64461233 Msa0133180:CDS 50.0%
!! AGACACCTTAGGGCTGGCTA+CGG + chr1_3:64456215-64456234 None:intergenic 55.0%
TGACCAGGAATGGACGTCTC+AGG + chr1_3:64456858-64456877 None:intergenic 55.0%
CTTGCTCCACTCTAACGCCT+GGG + chr1_3:64459433-64459452 None:intergenic 55.0%
TCTTGCTCCACTCTAACGCC+TGG + chr1_3:64459434-64459453 None:intergenic 55.0%
GTCTCGGTTGAAGGACCCTA+TGG - chr1_3:64460172-64460191 Msa0133180:intron 55.0%
! GTGATGGTGAGTGGTGGAAG+TGG - chr1_3:64460634-64460653 Msa0133180:intron 55.0%
CATCACCGTAGCCAGCCCTA+AGG - chr1_3:64456207-64456226 Msa0133180:three_prime_UTR 60.0%
AACCTAGCCGCTCTGCTCCT+AGG - chr1_3:64460457-64460476 Msa0133180:CDS 60.0%
TTCCTAGGAGCAGAGCGGCT+AGG + chr1_3:64460462-64460481 None:intergenic 60.0%
GTCTCAGCAGCTGCGTACAG+AGG + chr1_3:64461401-64461420 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 64456184 64461913 64456184 ID=Msa0133180;Name=Msa0133180
chr1_3 mRNA 64456184 64461913 64456184 ID=Msa0133180-mRNA-1;Parent=Msa0133180;Name=Msa0133180-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.62|0.55|0.88|0.5|0.44|9|1595|259
chr1_3 exon 64456184 64456610 64456184 ID=Msa0133180-mRNA-1:exon:21685;Parent=Msa0133180-mRNA-1
chr1_3 exon 64456767 64457476 64456767 ID=Msa0133180-mRNA-1:exon:21684;Parent=Msa0133180-mRNA-1
chr1_3 exon 64457879 64458112 64457879 ID=Msa0133180-mRNA-1:exon:21683;Parent=Msa0133180-mRNA-1
chr1_3 exon 64458335 64458662 64458335 ID=Msa0133180-mRNA-1:exon:21682;Parent=Msa0133180-mRNA-1
chr1_3 exon 64460311 64460504 64460311 ID=Msa0133180-mRNA-1:exon:21681;Parent=Msa0133180-mRNA-1
chr1_3 exon 64461084 64461272 64461084 ID=Msa0133180-mRNA-1:exon:21680;Parent=Msa0133180-mRNA-1
chr1_3 exon 64461377 64461478 64461377 ID=Msa0133180-mRNA-1:exon:21679;Parent=Msa0133180-mRNA-1
chr1_3 exon 64461601 64461782 64461601 ID=Msa0133180-mRNA-1:exon:21678;Parent=Msa0133180-mRNA-1
chr1_3 exon 64461905 64461913 64461905 ID=Msa0133180-mRNA-1:exon:21677;Parent=Msa0133180-mRNA-1
chr1_3 CDS 64461905 64461913 64461905 ID=Msa0133180-mRNA-1:cds;Parent=Msa0133180-mRNA-1
chr1_3 CDS 64461601 64461782 64461601 ID=Msa0133180-mRNA-1:cds;Parent=Msa0133180-mRNA-1
chr1_3 CDS 64461377 64461478 64461377 ID=Msa0133180-mRNA-1:cds;Parent=Msa0133180-mRNA-1
chr1_3 CDS 64461084 64461272 64461084 ID=Msa0133180-mRNA-1:cds;Parent=Msa0133180-mRNA-1
chr1_3 CDS 64460311 64460504 64460311 ID=Msa0133180-mRNA-1:cds;Parent=Msa0133180-mRNA-1
chr1_3 CDS 64458559 64458662 64458559 ID=Msa0133180-mRNA-1:cds;Parent=Msa0133180-mRNA-1
chr1_3 three_prime_UTR 64458335 64458558 64458335 ID=Msa0133180-mRNA-1:three_prime_utr;Parent=Msa0133180-mRNA-1
chr1_3 three_prime_UTR 64457879 64458112 64457879 ID=Msa0133180-mRNA-1:three_prime_utr;Parent=Msa0133180-mRNA-1
chr1_3 three_prime_UTR 64456767 64457476 64456767 ID=Msa0133180-mRNA-1:three_prime_utr;Parent=Msa0133180-mRNA-1
chr1_3 three_prime_UTR 64456184 64456610 64456184 ID=Msa0133180-mRNA-1:three_prime_utr;Parent=Msa0133180-mRNA-1
Gene Sequence

>Msa0133180

TATAATATGACTTTCTCTCTTCACACAAAAGTGTATGATGATGAAGAGCCACACATTCCTAAGGATCATTTTTCTTTTGATGTTTCTTGGATGGCTAACAGTTTGGATCTTGTTGCCCACAAAGGTCTACAAAAACACATGGACTCCCAAGCTAGAAATCAAGCTCAATTCTACATACTTCAGAGAGCAAGTATCCTGCTTTTCACATTCCCTATGATGTTCATTGGAGCTCTAGGTTGTGTTTATCTCCATCTTCATCGGGAAAAAATAACACAAAAGTTACCTTCCACAAGTACTGGGGCTCTTAAAAAATGTTTATGTTTCCTGAGACGTCCATTCCTGGTCATGCCTACAATTGGAATTGTTTCAGCTATGGAGCTTATTTTTGCAATCATGTTTGTTGCACTTTTGATATGGTCTCTTTACAATTACTTACGTACCAGTTTTGCTCACCTCCATATGCACAAAGAAGGCGAGAAAGTATGGGAAGCGAAGTTCAGGAGTGTATTTTTGAGACTAGGTTACATAGGAAACATATGTTGGGCATTTTTGTTCTTTCCAGTAACAAGAGGTTCTTCCATTCTACGTCTTGTTGGTCTCACATCTGAGTCAAGCATCAAATATCATATCTGGCTTGGGCAATTATCTATGGTTCTTTTTGCTGCACACACCATAGGCGTTAGAGTGGAGCAAGACATATGTATCCAATGTAGCTGGAGAGATTGCAAGTTTAATAGCATTAGCCATGTGGATAACAAGCATTCCACGAATAAGGCGTAA
Protein sequence

>Msa0133180

YNMTFSLHTKVYDDEEPHIPKDHFSFDVSWMANSLDLVAHKGLQKHMDSQARNQAQFYILQRASILLFTFPMMFIGALGCVYLHLHREKITQKLPSTSTGALKKCLCFLRRPFLVMPTIGIVSAMELIFAIMFVALLIWSLYNYLRTSFAHLHMHKEGEKVWEAKFRSVFLRLGYIGNICWAFLFFPVTRGSSILRLVGLTSESSIKYHIWLGQLSMVLFAAHTIGVRVEQDICIQCSWRDCKFNSISHVDNKHSTNKA*