AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0133260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0133260 MtrunA17_Chr1g0202741 90.275 473 11 3 18 455 230 702 0.0 865
Msa0133260 MtrunA17_Chr1g0202731 84.342 479 39 4 12 455 230 707 0.0 822
Msa0133260 MtrunA17_Chr8g0348521 53.830 483 183 8 9 455 223 701 3.59e-159 466
Msa0133260 MtrunA17_Chr8g0348531 53.306 484 189 5 8 455 234 716 2.25e-158 465
Msa0133260 MtrunA17_Chr8g0349071 55.921 304 120 4 20 311 2 303 3.01e-106 317
Msa0133260 MtrunA17_Chr4g0058571 32.829 463 269 11 17 438 242 703 1.69e-74 248
Msa0133260 MtrunA17_Chr2g0291481 30.709 508 287 12 3 454 241 739 5.01e-69 233
Msa0133260 MtrunA17_Chr8g0349081 53.279 122 42 2 348 455 1 121 5.93e-37 131
Msa0133260 MtrunA17_Chr4g0061441 30.435 207 124 6 50 238 473 677 3.97e-22 99.8
Msa0133260 MtrunA17_Chr8g0385411 27.586 232 129 6 45 239 508 737 6.81e-21 95.9
Msa0133260 MtrunA17_Chr8g0387591 28.440 218 117 7 48 232 552 763 7.79e-21 95.9
Msa0133260 MtrunA17_Chr2g0301511 28.959 221 121 8 48 236 541 757 9.90e-20 92.4
Msa0133260 MtrunA17_Chr3g0131361 27.679 224 120 7 55 239 522 742 2.84e-19 90.9
Msa0133260 MtrunA17_Chr1g0192121 25.328 229 134 6 46 239 500 726 5.78e-19 90.1
Msa0133260 MtrunA17_Chr3g0131401 26.126 222 123 7 55 239 541 758 1.06e-18 89.4
Msa0133260 MtrunA17_Chr7g0272591 25.806 217 127 5 55 239 524 738 5.87e-18 87.0
Msa0133260 MtrunA17_Chr3g0131381 26.872 227 128 6 48 239 527 750 2.24e-17 85.1
Msa0133260 MtrunA17_Chr7g0238371 26.840 231 120 8 55 239 469 696 7.09e-15 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0133260 AT5G23990.2 57.411 479 162 6 18 455 222 699 0.0 563
Msa0133260 AT5G23990.1 57.411 479 162 6 18 455 180 657 0.0 562
Msa0133260 AT5G23990.3 57.411 479 162 6 18 455 90 567 0.0 561
Msa0133260 AT5G23980.1 58.038 479 159 6 18 455 222 699 0.0 559
Msa0133260 AT1G01580.1 50.313 479 199 6 16 455 247 725 3.61e-163 478
Msa0133260 AT1G01580.2 50.313 479 199 6 16 455 325 803 2.90e-162 478
Msa0133260 AT1G01590.1 47.951 488 199 6 9 455 231 704 1.33e-156 460
Msa0133260 AT1G23020.4 47.571 494 203 11 1 455 217 693 3.50e-145 431
Msa0133260 AT1G23020.3 47.571 494 203 11 1 455 217 693 3.50e-145 431
Msa0133260 AT1G23020.6 47.571 494 203 11 1 455 218 694 3.53e-145 431
Msa0133260 AT1G23020.7 47.571 494 203 11 1 455 214 690 3.65e-145 431
Msa0133260 AT1G23020.1 47.571 494 203 11 1 455 240 716 4.15e-145 431
Msa0133260 AT1G23020.5 47.571 494 203 11 1 455 240 716 4.15e-145 431
Msa0133260 AT1G23020.2 47.571 494 203 11 1 455 241 717 4.27e-145 431
Msa0133260 AT5G50160.2 31.323 514 258 13 21 454 50 548 3.33e-76 248
Msa0133260 AT5G50160.1 31.323 514 258 13 21 454 229 727 2.10e-74 248
Msa0133260 AT5G49740.1 33.333 504 264 14 15 454 251 746 4.44e-70 236
Msa0133260 AT5G49730.1 33.203 512 270 14 9 454 232 737 1.20e-67 229
Msa0133260 AT5G49740.3 33.860 443 245 12 15 417 251 685 3.75e-65 223
Msa0133260 AT5G49740.2 39.100 289 152 4 15 279 251 539 5.45e-61 208
Msa0133260 AT5G49730.2 39.130 299 154 5 9 279 232 530 3.50e-59 203
Msa0133260 AT1G19230.1 28.571 224 125 8 48 239 536 756 8.24e-22 99.4
Msa0133260 AT4G25090.1 31.280 211 116 8 55 239 484 691 1.01e-21 99.0
Msa0133260 AT1G19230.2 28.571 224 125 8 48 239 562 782 1.01e-21 99.0
Msa0133260 AT4G25090.2 31.280 211 116 8 55 239 472 679 1.25e-21 98.6
Msa0133260 AT1G64060.1 27.650 217 120 6 48 232 558 769 3.49e-21 97.4
Msa0133260 AT1G09090.2 27.511 229 128 9 45 238 465 690 1.62e-19 92.0
Msa0133260 AT4G11230.1 27.984 243 138 8 44 253 539 777 2.74e-19 91.7
Msa0133260 AT5G47910.1 26.941 219 126 5 46 232 543 759 8.51e-19 90.1
Msa0133260 AT5G51060.1 26.606 218 124 6 55 239 531 745 2.42e-18 88.6
Msa0133260 AT5G07390.1 25.943 212 120 6 55 232 522 730 1.98e-17 85.9
Msa0133260 AT5G07390.2 25.943 212 120 6 55 232 490 698 2.10e-17 85.5
Msa0133260 AT1G09090.1 28.859 149 89 7 45 179 465 610 2.30e-12 69.7

Find 158 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGCCACAACCAGTTATT+TGG 0.102710 1_3:-64538321 None:intergenic
AGAACTTTCTTCTTCATCTT+TGG 0.207308 1_3:+64537507 Msa0133260:CDS
ACAGCCTACACTTCGATTCT+TGG 0.252099 1_3:+64536383 Msa0133260:five_prime_UTR
CAACTAGAAGACACCGTAAA+AGG 0.252647 1_3:-64537415 None:intergenic
CAAGCTACCAATGTACATTT+TGG 0.258420 1_3:+64538657 Msa0133260:CDS
CACATTCTGCACAATTTCTA+AGG 0.259434 1_3:+64537566 Msa0133260:CDS
TCACCAGGGTCATGGATTTA+TGG 0.263989 1_3:+64538591 Msa0133260:CDS
TGAAAATATATGTAAGGTTC+GGG 0.284788 1_3:-64536476 None:intergenic
GTTCTAGTGTTGTATTTCTT+TGG 0.285019 1_3:+64538502 Msa0133260:CDS
GGTGTCTTCTAGTTGTAATT+TGG 0.286944 1_3:+64537423 Msa0133260:CDS
CTGGCTTGGGCAATTATCTA+TGG 0.296562 1_3:+64535103 Msa0133260:five_prime_UTR
AAGAAAACGGGATTAATTAA+TGG 0.306878 1_3:+64535857 Msa0133260:five_prime_UTR
ATGGAAGAACCTCTTGTTAC+TGG 0.310648 1_3:-64535032 None:intergenic
CAGTAGATCCTTGCCATTAT+AGG 0.313726 1_3:-64535340 None:intergenic
ATATATACTGTCCCTTCATT+TGG 0.318958 1_3:+64535389 Msa0133260:five_prime_UTR
CAAGGGCATCACAAGGTAAA+AGG 0.320473 1_3:-64537078 None:intergenic
TCTCCTATCTCAGCTGTATT+AGG 0.324457 1_3:+64538297 Msa0133260:CDS
AACGAGTAACAATTCCTAAA+AGG 0.325542 1_3:-64538380 None:intergenic
TCTCGCCTTCTTTGTGCATA+TGG 0.327570 1_3:-64534350 None:intergenic
TGGAGAGAAGATAAAATTCT+AGG 0.330952 1_3:-64535714 None:intergenic
TAGAATTTGTGCTTCTGGTT+TGG 0.336429 1_3:+64538932 Msa0133260:CDS
TAACAAGCATTCCACGAATA+AGG 0.339631 1_3:+64536873 Msa0133260:CDS
GTTGCTAGAATTTGTGCTTC+TGG 0.342401 1_3:+64538927 Msa0133260:CDS
TTCTTGGATGGCTAACAGTT+TGG 0.352809 1_3:+64533752 Msa0133260:five_prime_UTR
CTGTATTAGGCCCAAATAAC+TGG 0.356173 1_3:+64538310 Msa0133260:CDS
AGGCAAAGATGTTGGAGTTA+TGG 0.357291 1_3:+64538875 Msa0133260:intron
CATAATTTGAGGTCCTATAA+TGG 0.359178 1_3:+64535327 Msa0133260:five_prime_UTR
ACATTCCCTATGATGTTCAT+TGG 0.361666 1_3:+64533995 Msa0133260:five_prime_UTR
ACACAAACAAGTAGGAGTTT+TGG 0.366649 1_3:-64538093 None:intergenic
GCTGAAACAATTCCAATTGT+AGG 0.367850 1_3:-64534243 None:intergenic
ATAATAATCAATCTCTTAAT+CGG 0.369844 1_3:+64535558 Msa0133260:five_prime_UTR
CAAGCATCAAATATCATATC+TGG 0.370925 1_3:+64535084 Msa0133260:five_prime_UTR
ACACAGGTGAAGTGTATAAC+TGG 0.374089 1_3:+64538427 Msa0133260:intron
AGAGCTCCAATGAACATCAT+AGG 0.376728 1_3:-64534001 None:intergenic
CATTGCAGCTTGGAAACCTT+TGG 0.378460 1_3:-64537388 None:intergenic
GGCGAGATTGTAAGAATCTA+AGG 0.379884 1_3:-64537030 None:intergenic
ATGAAAATATATGTAAGGTT+CGG 0.379925 1_3:-64536477 None:intergenic
ATTGAGCTTGATTTCTAGCT+TGG 0.383594 1_3:-64533815 None:intergenic
TAGATATATACATGCATGAT+TGG 0.383701 1_3:-64536754 None:intergenic
GCATAAACAAAAGACCTATA+TGG 0.383951 1_3:-64535305 None:intergenic
TTTCCTGAGACGTCCATTCC+TGG 0.389736 1_3:+64534215 Msa0133260:five_prime_UTR
GGTGTCTATCAATGAGGAAT+AGG 0.392092 1_3:-64537009 None:intergenic
ATCAAATATCATATCTGGCT+TGG 0.394614 1_3:+64535089 Msa0133260:five_prime_UTR
ATACTATAACCCCACAAGTT+TGG 0.395633 1_3:+64537351 Msa0133260:CDS
CATATGGAGGTGAGCAAAAC+TGG 0.398421 1_3:-64534334 None:intergenic
ATCTACTGCCTCTTTCTGAT+TGG 0.401798 1_3:+64535355 Msa0133260:five_prime_UTR
GTAGATGGGAAGCGAAGTTC+AGG 0.406799 1_3:+64534952 Msa0133260:intron
GAGGTTGAAATTCTTGTTGT+TGG 0.408231 1_3:-64538071 None:intergenic
TCTTCCATTCTACGTCTTGT+TGG 0.419851 1_3:+64535047 Msa0133260:five_prime_UTR
ATTTGATCGTAATATGTTGA+TGG 0.420922 1_3:+64536677 Msa0133260:five_prime_UTR
TTTATCTTCTCTCCATCAAA+AGG 0.423004 1_3:+64535722 Msa0133260:five_prime_UTR
TATTGTCTTACTAGGATCCT+TGG 0.429043 1_3:-64537113 None:intergenic
ATGTGCATTTACAAAGAAAA+CGG 0.429100 1_3:+64535844 Msa0133260:five_prime_UTR
TTCCTGGTCATGCCTACAAT+TGG 0.433473 1_3:+64534231 Msa0133260:five_prime_UTR
GTGTTTATCTCCATCTTCAT+CGG 0.438108 1_3:+64534029 Msa0133260:five_prime_UTR
ACATACCTCAACCATTTGAT+TGG 0.438129 1_3:-64535174 None:intergenic
CATCTTAATGTCTCGGTTGA+AGG 0.443438 1_3:+64537532 Msa0133260:CDS
TGTTTATCTCCATCTTCATC+GGG 0.445261 1_3:+64534030 Msa0133260:five_prime_UTR
CAAGCCACAACCAGTTATTT+GGG 0.445497 1_3:-64538320 None:intergenic
CATGACCCTGGTGATCTTGT+TGG 0.446030 1_3:-64538582 None:intergenic
TCTCATTCATATAGCCATAT+AGG 0.449680 1_3:+64535291 Msa0133260:five_prime_UTR
CATCAATGTTGTCCAAATGA+AGG 0.450685 1_3:-64535401 None:intergenic
TGTGCATTTACAAAGAAAAC+GGG 0.458483 1_3:+64535845 Msa0133260:five_prime_UTR
TTGAGCTTGATTTCTAGCTT+GGG 0.460467 1_3:-64533814 None:intergenic
TTTGGATCATCTTAATGTCT+CGG 0.460525 1_3:+64537525 Msa0133260:CDS
AATTGGAATTGTTTCAGCTA+TGG 0.460958 1_3:+64534248 Msa0133260:five_prime_UTR
TACATCTTACGCCTTATTCG+TGG 0.460998 1_3:-64536884 None:intergenic
ATGATGTTCATTGGAGCTCT+AGG 0.465216 1_3:+64534004 Msa0133260:five_prime_UTR
ATGTGAAAATTTGAAAATGA+TGG 0.465344 1_3:-64535509 None:intergenic
TTTATGAACACCAAACTTGT+GGG 0.465358 1_3:-64537361 None:intergenic
TCTTGCTCCACTCTAACGCC+TGG 0.465698 1_3:-64536793 None:intergenic
TCAAATATCATATCTGGCTT+GGG 0.467506 1_3:+64535090 Msa0133260:five_prime_UTR
TCTAATGATCTAGCATTTCG+TGG 0.472808 1_3:-64536600 None:intergenic
GGGCCTAATACAGCTGAGAT+AGG 0.482185 1_3:-64538300 None:intergenic
CCTGGTGATCTTGTTGGTGT+TGG 0.482209 1_3:-64538576 None:intergenic
TGCAATCTCTCCAGCTACAT+TGG 0.482582 1_3:-64536825 None:intergenic
GTCTCGGTTGAAGGACCCTA+TGG 0.485389 1_3:+64537541 Msa0133260:CDS
GATCTAGCATTTCGTGGCTA+TGG 0.487506 1_3:-64536594 None:intergenic
TGACCAGGAATGGACGTCTC+AGG 0.492465 1_3:-64534218 None:intergenic
TTGTGCAGAATGTGGTCCAT+AGG 0.494669 1_3:-64537557 None:intergenic
GATGTTGGAGTTATGGTTTG+TGG 0.495679 1_3:+64538882 Msa0133260:CDS
TACATGTGCATGATTGCTCC+TGG 0.499735 1_3:+64536980 Msa0133260:CDS
TACAATCTCGCCAACATGCT+CGG 0.502728 1_3:+64537041 Msa0133260:CDS
GAGACCAACAAGACGTAGAA+TGG 0.503751 1_3:-64535051 None:intergenic
CCAAATAACTGGTTGTGGCT+TGG 0.505006 1_3:+64538321 Msa0133260:CDS
AACTAGAAGACACCGTAAAA+GGG 0.507134 1_3:-64537414 None:intergenic
GGCCATAAAATCTCTTACTA+CGG 0.508657 1_3:+64535579 Msa0133260:five_prime_UTR
TTGGGGCATCACCAATCAAA+TGG 0.509212 1_3:+64535163 Msa0133260:five_prime_UTR
ACATATGTATCCAATGTAGC+TGG 0.511036 1_3:+64536815 Msa0133260:CDS
CGCCTTCTTTGTGCATATGG+AGG 0.515718 1_3:-64534347 None:intergenic
TCACGGATTATAGATATGAA+TGG 0.518337 1_3:-64538033 None:intergenic
GAGTGTAAAGGCAAAGATGT+TGG 0.518341 1_3:+64538867 Msa0133260:intron
ATTGTAGGCATGACCAGGAA+TGG 0.518429 1_3:-64534228 None:intergenic
TCATAGGGAATGTGAAAAGC+AGG 0.518452 1_3:-64533985 None:intergenic
ATTTATGAACACCAAACTTG+TGG 0.522214 1_3:-64537362 None:intergenic
GGCTTTGAAATATGAGATCA+CGG 0.523890 1_3:-64538050 None:intergenic
TAGGCCCAAATAACTGGTTG+TGG 0.527436 1_3:+64538316 Msa0133260:CDS
GAGCTCCAATGAACATCATA+GGG 0.528983 1_3:-64534000 None:intergenic
GGTGTTCATAAATGTTCCAA+AGG 0.529380 1_3:+64537372 Msa0133260:CDS
AGGTCACCAATTAAAACTGA+TGG 0.530758 1_3:-64538976 None:intergenic
TTACATAGGAAACATATGTT+GGG 0.532430 1_3:+64534995 Msa0133260:five_prime_UTR
GTGATGGTGAGTGGTGGAAG+TGG 0.534156 1_3:+64538003 Msa0133260:CDS
GTTACATAGGAAACATATGT+TGG 0.535893 1_3:+64534994 Msa0133260:five_prime_UTR
CCAACACCAACAAGATCACC+AGG 0.536301 1_3:+64538576 Msa0133260:CDS
TGTGCAGAATGTGGTCCATA+GGG 0.536839 1_3:-64537556 None:intergenic
AAATTACCCCAAATTGATCA+AGG 0.540847 1_3:+64535252 Msa0133260:five_prime_UTR
GGAGAGAAGATAAAATTCTA+GGG 0.543391 1_3:-64535713 None:intergenic
CACCTCCATATGCACAAAGA+AGG 0.544934 1_3:+64534345 Msa0133260:five_prime_UTR
ACTGGACTTACAAGGTTATG+TGG 0.547151 1_3:+64538445 Msa0133260:CDS
ATCAATGTTGTCCAAATGAA+GGG 0.547582 1_3:-64535400 None:intergenic
TTATTCTATGCCATCCATGT+TGG 0.547960 1_3:+64536950 Msa0133260:CDS
AGATATAGAGAATGTAGAGA+TGG 0.551790 1_3:-64536928 None:intergenic
GCTCAATTCCAATCAGAAAG+AGG 0.557001 1_3:-64535363 None:intergenic
CCTTGGAGAAGTTGAGCTCA+AGG 0.557986 1_3:-64537096 None:intergenic
CTGATAGTAACCGAGCATGT+TGG 0.558645 1_3:-64537051 None:intergenic
AAAAGGGTGCCATTGCAGCT+TGG 0.560802 1_3:-64537398 None:intergenic
CAAAGGTTTCCAAGCTGCAA+TGG 0.560929 1_3:+64537389 Msa0133260:CDS
CAACAAGATCACCAGGGTCA+TGG 0.560968 1_3:+64538583 Msa0133260:CDS
CTTAGAAATTGTGCAGAATG+TGG 0.565118 1_3:-64537565 None:intergenic
CATCACCAATCAAATGGTTG+AGG 0.565173 1_3:+64535169 Msa0133260:five_prime_UTR
TCTACATACTTCAGAGAGCA+AGG 0.565212 1_3:+64533838 Msa0133260:five_prime_UTR
AAGGTTCGGGGTTCAAACCC+CGG 0.568594 1_3:-64536463 None:intergenic
TGATTTCCCAGGCGTTAGAG+TGG 0.569832 1_3:+64536786 Msa0133260:CDS
TTCCAATTGTAGGCATGACC+AGG 0.569930 1_3:-64534233 None:intergenic
AGTGTATAACTGGACTTACA+AGG 0.572164 1_3:+64538437 Msa0133260:CDS
TTGTTCTTTCCAGTAACAAG+AGG 0.575453 1_3:+64535023 Msa0133260:five_prime_UTR
ATGTAAGCTTCGATTTGTAA+CGG 0.578008 1_3:-64538195 None:intergenic
AAACGAATCAACCTTGTGGA+AGG 0.590519 1_3:-64534073 None:intergenic
CTTGCTCCACTCTAACGCCT+GGG 0.591015 1_3:-64536792 None:intergenic
TTGGATCTTGTTGCCCACAA+AGG 0.591496 1_3:+64533771 Msa0133260:five_prime_UTR
CACAAAAGTTACCTTCCACA+AGG 0.596116 1_3:+64534062 Msa0133260:five_prime_UTR
ATGAGGAATAGGAAAATCCC+AGG 0.598597 1_3:-64536998 None:intergenic
AAATGATCCTTAGGAATGTG+TGG 0.600017 1_3:-64533717 None:intergenic
GTATTCAACTCCAACATGGA+TGG 0.603192 1_3:-64536960 None:intergenic
TGAAGAGCCACACATTCCTA+AGG 0.606681 1_3:+64533710 Msa0133260:five_prime_UTR
CCTTGCACCAAAATGTACAT+TGG 0.609618 1_3:-64538664 None:intergenic
GCACTAAAGATTGATGAGGA+AGG 0.616155 1_3:-64538635 None:intergenic
TGGAATGCTTGTTATCCACA+TGG 0.616270 1_3:-64536864 None:intergenic
CCTTGAGCTCAACTTCTCCA+AGG 0.626515 1_3:+64537096 Msa0133260:CDS
ATTGCCAAGAATCGAAGTGT+AGG 0.626591 1_3:-64536387 None:intergenic
GTTTAATAGCATTAGCCATG+TGG 0.627630 1_3:+64536849 Msa0133260:CDS
CAGATTGTGATGGTGAGTGG+TGG 0.628879 1_3:+64537997 Msa0133260:CDS
TTATGAACACCAAACTTGTG+GGG 0.629351 1_3:-64537360 None:intergenic
CTTGGAGAAGTTGAGCTCAA+GGG 0.630131 1_3:-64537095 None:intergenic
AGGAAGCATAAGATCTAACA+TGG 0.631448 1_3:-64538139 None:intergenic
TTTGAGGTCCTATAATGGCA+AGG 0.631719 1_3:+64535332 Msa0133260:five_prime_UTR
ATCTAAGGTGTCTATCAATG+AGG 0.634860 1_3:-64537015 None:intergenic
GAGTAACAATTCCTAAAAGG+AGG 0.636071 1_3:-64538377 None:intergenic
GAGCAGATTGTGATGGTGAG+TGG 0.648818 1_3:+64537994 Msa0133260:CDS
ACATGTGCATGATTGCTCCT+GGG 0.659062 1_3:+64536981 Msa0133260:CDS
GCTTGCACTAAAGATTGATG+AGG 0.661055 1_3:-64538639 None:intergenic
TTGAGCTCAAGGGCATCACA+AGG 0.661183 1_3:-64537085 None:intergenic
GAACCATAAATCCATGACCC+TGG 0.663108 1_3:-64538594 None:intergenic
CTGAGATAGGAGAATCTGAG+AGG 0.667792 1_3:-64538287 None:intergenic
ACATGTATTCAACTCCAACA+TGG 0.684245 1_3:-64536964 None:intergenic
GAAAATATATGTAAGGTTCG+GGG 0.691899 1_3:-64536475 None:intergenic
CAGGCATGAGCAGATTGTGA+TGG 0.694392 1_3:+64537987 Msa0133260:intron
CAACACCAACAAGATCACCA+GGG 0.799066 1_3:+64538577 Msa0133260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTGTTAATGATTTTA+GGG + chr1_3:64533954-64533973 Msa0133260:intron 10.0%
!! AACAAATTATTCTATTAAAT+TGG + chr1_3:64534492-64534511 Msa0133260:intron 10.0%
!!! TTAAACTTTATTTTTTCATT+CGG - chr1_3:64534633-64534652 None:intergenic 10.0%
!!! ATAATATTATTTTTTCATTC+AGG - chr1_3:64534899-64534918 None:intergenic 10.0%
!! AATATTATACCTTTATAATT+TGG + chr1_3:64534911-64534930 Msa0133260:intron 10.0%
!!! TTTGACAATTTTATTATTTT+TGG - chr1_3:64535634-64535653 None:intergenic 10.0%
!!! TACATTAATCTTTTTTTTTA+GGG - chr1_3:64535676-64535695 None:intergenic 10.0%
!!! TTACATTAATCTTTTTTTTT+AGG - chr1_3:64535677-64535696 None:intergenic 10.0%
!!! AAAATAACACAAATTTTTTT+AGG + chr1_3:64535784-64535803 Msa0133260:five_prime_UTR 10.0%
!!! AAATAACACAAATTTTTTTA+GGG + chr1_3:64535785-64535804 Msa0133260:five_prime_UTR 10.0%
!! AAAAAATGAAAATATATGTA+AGG - chr1_3:64536485-64536504 None:intergenic 10.0%
!!! CATTAATTGTTAATGATTTT+AGG + chr1_3:64533953-64533972 Msa0133260:intron 15.0%
!!! TTAATTGTTAATGATTTTAG+GGG + chr1_3:64533955-64533974 Msa0133260:intron 15.0%
!! TCAAAGTAGTTAATTATTAA+AGG - chr1_3:64534126-64534145 None:intergenic 15.0%
!!! TAATAGAATAATTTGTTGTT+AGG - chr1_3:64534489-64534508 None:intergenic 15.0%
!! TATTCTATTAAATTGGAATT+TGG + chr1_3:64534499-64534518 Msa0133260:intron 15.0%
!! GATTCTATTAAATTTGAATT+TGG - chr1_3:64534788-64534807 None:intergenic 15.0%
!! ATGAAAAAATAAACTTTATC+CGG - chr1_3:64534836-64534855 None:intergenic 15.0%
!!! GATAAAGTTTATTTTTTCAT+CGG + chr1_3:64534836-64534855 Msa0133260:intron 15.0%
!! TAATCAATACCAAATTATAA+AGG - chr1_3:64534923-64534942 None:intergenic 15.0%
!!! TATAATTTGGTATTGATTAT+TGG + chr1_3:64534924-64534943 Msa0133260:intron 15.0%
!! ATAATAATCAATCTCTTAAT+CGG + chr1_3:64535558-64535577 Msa0133260:five_prime_UTR 15.0%
!!! AATACAATTATTCACTTTTT+GGG - chr1_3:64535605-64535624 None:intergenic 15.0%
!!! TAATACAATTATTCACTTTT+TGG - chr1_3:64535606-64535625 None:intergenic 15.0%
!!! AATAACACAAATTTTTTTAG+GGG + chr1_3:64535786-64535805 Msa0133260:five_prime_UTR 15.0%
!! ATTATTGCCAATAATTTATT+GGG - chr1_3:64535991-64536010 None:intergenic 15.0%
!! AATTATTGCCAATAATTTAT+TGG - chr1_3:64535992-64536011 None:intergenic 15.0%
!! ACATTGAAAAATTTATAGAA+AGG + chr1_3:64536278-64536297 Msa0133260:intron 15.0%
!!! TTTCGTTTTTTTTTTTTTTG+TGG + chr1_3:64536440-64536459 Msa0133260:five_prime_UTR 15.0%
!!! TAAAACGTTCTTTTTTTTAA+TGG + chr1_3:64536535-64536554 Msa0133260:five_prime_UTR 15.0%
!! TAAACAAAAAATGATAACTT+TGG - chr1_3:64537311-64537330 None:intergenic 15.0%
!! GTTTATAATGTGATAAAATA+AGG + chr1_3:64537741-64537760 Msa0133260:intron 15.0%
!!! ATTTTTCTTTTGATGTTTCT+TGG + chr1_3:64533736-64533755 Msa0133260:five_prime_UTR 20.0%
!! AAAAGTTCATTAAGAATGTT+TGG - chr1_3:64534531-64534550 None:intergenic 20.0%
!! AAAAAATAAAGTTTAACTCG+AGG + chr1_3:64534637-64534656 Msa0133260:intron 20.0%
!! AAAAATAAAGTTTAACTCGA+GGG + chr1_3:64534638-64534657 Msa0133260:intron 20.0%
!! TGAATTGAATAATCATTGAT+TGG - chr1_3:64534589-64534608 None:intergenic 20.0%
!! AATCAATGATTATTCAATTC+AGG + chr1_3:64534697-64534716 Msa0133260:intron 20.0%
!!! ACTAAAGTACTTTAATCATT+CGG + chr1_3:64534725-64534744 Msa0133260:intron 20.0%
!!! TTTTAACGAACTTTTACTTA+TGG - chr1_3:64534751-64534770 None:intergenic 20.0%
!! AAAAGTTCGTTAAAATTGTT+TGG + chr1_3:64534756-64534775 Msa0133260:intron 20.0%
!!! CATAGGTTTTTTCATATATT+GGG + chr1_3:64535145-64535164 Msa0133260:five_prime_UTR 20.0%
!!! ATAGGTTTTTTCATATATTG+GGG + chr1_3:64535146-64535165 Msa0133260:five_prime_UTR 20.0%
!!! TTTTGTTTATGCATAATTTG+AGG + chr1_3:64535316-64535335 Msa0133260:five_prime_UTR 20.0%
!! ATGTGAAAATTTGAAAATGA+TGG - chr1_3:64535512-64535531 None:intergenic 20.0%
!! AATGTAAAAATCTCTAAACA+AGG + chr1_3:64535690-64535709 Msa0133260:five_prime_UTR 20.0%
!!! TTTTCTCAAAAATTTGAAGT+TGG + chr1_3:64536204-64536223 Msa0133260:intron 20.0%
!! TAGAAGCTCTTAAAATAAAA+AGG + chr1_3:64536243-64536262 Msa0133260:intron 20.0%
!! AGCTTAGAAAAAATTGAAAA+GGG + chr1_3:64536301-64536320 Msa0133260:intron 20.0%
!! ATGAAAATATATGTAAGGTT+CGG - chr1_3:64536480-64536499 None:intergenic 20.0%
!!! AAATTTTGTATTGTCTTACT+AGG - chr1_3:64537124-64537143 None:intergenic 20.0%
!! TAGTGTTACAATTAAAAATG+TGG + chr1_3:64537459-64537478 Msa0133260:CDS 20.0%
!! AGTGTTACAATTAAAAATGT+GGG + chr1_3:64537460-64537479 Msa0133260:CDS 20.0%
!! TCATATACTATGTATATGAA+GGG + chr1_3:64537604-64537623 Msa0133260:intron 20.0%
!!! TTTTAAAAACACAAACAAGT+AGG - chr1_3:64538104-64538123 None:intergenic 20.0%
!! AAAAACAAATCCAAACTATA+TGG + chr1_3:64538253-64538272 Msa0133260:CDS 20.0%
!!! TTGTTTTAAACCATATAGTT+TGG - chr1_3:64538266-64538285 None:intergenic 20.0%
!!! TTTTATTGTTGTGTGTAAAT+TGG + chr1_3:64538740-64538759 Msa0133260:intron 20.0%
!! TTTATTGTTGTGTGTAAATT+GGG + chr1_3:64538741-64538760 Msa0133260:intron 20.0%
! TCAAAAGAAAAATGATCCTT+AGG - chr1_3:64533729-64533748 None:intergenic 25.0%
!! TAATTATTAAAGGCTAGCTA+GGG - chr1_3:64534116-64534135 None:intergenic 25.0%
!! TTAATTATTAAAGGCTAGCT+AGG - chr1_3:64534117-64534136 None:intergenic 25.0%
!!! ATATGTTTTTGTTTCAGTAC+TGG + chr1_3:64534171-64534190 Msa0133260:intron 25.0%
!!! TATGTTTTTGTTTCAGTACT+GGG + chr1_3:64534172-64534191 Msa0133260:intron 25.0%
!! ACTAAAGTACTCTAATCATT+CGG - chr1_3:64534562-64534581 None:intergenic 25.0%
! GATCAATGATTATTCAATTC+AGG - chr1_3:64534590-64534609 None:intergenic 25.0%
!!! ACTTTATTTTTTCATTCGGT+CGG - chr1_3:64534629-64534648 None:intergenic 25.0%
! CAAACTTTATTATAACTCTC+CGG + chr1_3:64534814-64534833 Msa0133260:intron 25.0%
!!! AAAGTTTATTTTTTCATCGG+AGG + chr1_3:64534839-64534858 Msa0133260:intron 25.0%
!!! AAGTTTATTTTTTCATCGGA+GGG + chr1_3:64534840-64534859 Msa0133260:intron 25.0%
! TTACATAGGAAACATATGTT+GGG + chr1_3:64534995-64535014 Msa0133260:five_prime_UTR 25.0%
! CCAATATATGAAAAAACCTA+TGG - chr1_3:64535147-64535166 None:intergenic 25.0%
!!! CCATAGGTTTTTTCATATAT+TGG + chr1_3:64535144-64535163 Msa0133260:five_prime_UTR 25.0%
!! TCTTTTTCCTTGATCAATTT+GGG - chr1_3:64535262-64535281 None:intergenic 25.0%
!! TTCTTTTTCCTTGATCAATT+TGG - chr1_3:64535263-64535282 None:intergenic 25.0%
! ATGTGCATTTACAAAGAAAA+CGG + chr1_3:64535844-64535863 Msa0133260:five_prime_UTR 25.0%
! AAGAAAACGGGATTAATTAA+TGG + chr1_3:64535857-64535876 Msa0133260:five_prime_UTR 25.0%
!!! CACTAGTTCATAGTTTTTTT+TGG + chr1_3:64535882-64535901 Msa0133260:five_prime_UTR 25.0%
! TCACTAGTTCATAGTTTAAA+GGG + chr1_3:64535909-64535928 Msa0133260:intron 25.0%
!! GAATTCTTCGAAGATTATTT+TGG - chr1_3:64535954-64535973 None:intergenic 25.0%
! GGCAATAATTAAGATTAAGA+TGG + chr1_3:64536002-64536021 Msa0133260:intron 25.0%
! AAAATTATGTGAGACTTTGT+TGG - chr1_3:64536125-64536144 None:intergenic 25.0%
! GAGCTTAGAAAAAATTGAAA+AGG + chr1_3:64536300-64536319 Msa0133260:intron 25.0%
!!! GTTTTTTTTTTTTTTGTGGC+CGG + chr1_3:64536444-64536463 Msa0133260:five_prime_UTR 25.0%
!!! TTTTTTTTTTTTTTGTGGCC+GGG + chr1_3:64536445-64536464 Msa0133260:five_prime_UTR 25.0%
! TGAAAATATATGTAAGGTTC+GGG - chr1_3:64536479-64536498 None:intergenic 25.0%
! ATTTGATCGTAATATGTTGA+TGG + chr1_3:64536677-64536696 Msa0133260:five_prime_UTR 25.0%
! TAGATATATACATGCATGAT+TGG - chr1_3:64536757-64536776 None:intergenic 25.0%
!!! TACAAATATTTTGATTTCCC+AGG + chr1_3:64536775-64536794 Msa0133260:CDS 25.0%
! TATAGTATAAACCTGAAGTT+AGG - chr1_3:64537339-64537358 None:intergenic 25.0%
!!! CACAATTTCTAAGGTAAATT+TGG + chr1_3:64537575-64537594 Msa0133260:intron 25.0%
! CTCATATACTATGTATATGA+AGG + chr1_3:64537603-64537622 Msa0133260:intron 25.0%
! ATAAGGATAAATTACTGTTG+CGG + chr1_3:64537758-64537777 Msa0133260:intron 25.0%
! TATCCAATTGAAAATAACAC+AGG + chr1_3:64538411-64538430 Msa0133260:intron 25.0%
! TTCTTTTGATGTTTCTTGGA+TGG + chr1_3:64533740-64533759 Msa0133260:five_prime_UTR 30.0%
!!! TTATTTTTTCCCGATGAAGA+TGG - chr1_3:64534042-64534061 None:intergenic 30.0%
!! ATGTTTTTGTTTCAGTACTG+GGG + chr1_3:64534173-64534192 Msa0133260:intron 30.0%
AATTGGAATTGTTTCAGCTA+TGG + chr1_3:64534248-64534267 Msa0133260:five_prime_UTR 30.0%
!! TGTTTGTTGCACTTTTGATA+TGG + chr1_3:64534289-64534308 Msa0133260:five_prime_UTR 30.0%
! TCGAGGGTTAATCTAAAATT+CGG + chr1_3:64534654-64534673 Msa0133260:intron 30.0%
!! TGATTATTGGTCTTTGTAGA+TGG + chr1_3:64534937-64534956 Msa0133260:intron 30.0%
!! GATTATTGGTCTTTGTAGAT+GGG + chr1_3:64534938-64534957 Msa0133260:intron 30.0%
!!! TTTTTGAGACTAGGTTACAT+AGG + chr1_3:64534981-64535000 Msa0133260:five_prime_UTR 30.0%
GTTACATAGGAAACATATGT+TGG + chr1_3:64534994-64535013 Msa0133260:five_prime_UTR 30.0%
CAAGCATCAAATATCATATC+TGG + chr1_3:64535084-64535103 Msa0133260:five_prime_UTR 30.0%
ATCAAATATCATATCTGGCT+TGG + chr1_3:64535089-64535108 Msa0133260:five_prime_UTR 30.0%
! TCAAATATCATATCTGGCTT+GGG + chr1_3:64535090-64535109 Msa0133260:five_prime_UTR 30.0%
AAATTACCCCAAATTGATCA+AGG + chr1_3:64535252-64535271 Msa0133260:five_prime_UTR 30.0%
! CTTTTTCCTTGATCAATTTG+GGG - chr1_3:64535261-64535280 None:intergenic 30.0%
TCTCATTCATATAGCCATAT+AGG + chr1_3:64535291-64535310 Msa0133260:five_prime_UTR 30.0%
GCATAAACAAAAGACCTATA+TGG - chr1_3:64535308-64535327 None:intergenic 30.0%
! CATAATTTGAGGTCCTATAA+TGG + chr1_3:64535327-64535346 Msa0133260:five_prime_UTR 30.0%
ATATATACTGTCCCTTCATT+TGG + chr1_3:64535389-64535408 Msa0133260:five_prime_UTR 30.0%
ATCAATGTTGTCCAAATGAA+GGG - chr1_3:64535403-64535422 None:intergenic 30.0%
GGAGAGAAGATAAAATTCTA+GGG - chr1_3:64535716-64535735 None:intergenic 30.0%
TGGAGAGAAGATAAAATTCT+AGG - chr1_3:64535717-64535736 None:intergenic 30.0%
TTTATCTTCTCTCCATCAAA+AGG + chr1_3:64535722-64535741 Msa0133260:five_prime_UTR 30.0%
TGTGCATTTACAAAGAAAAC+GGG + chr1_3:64535845-64535864 Msa0133260:five_prime_UTR 30.0%
CTCACTAGTTCATAGTTTAA+AGG + chr1_3:64535908-64535927 Msa0133260:intron 30.0%
AGTTCATAGTTTAAAGGGAT+TGG + chr1_3:64535914-64535933 Msa0133260:intron 30.0%
TTCGAAGAATTCATTCATGT+TGG + chr1_3:64535962-64535981 Msa0133260:intron 30.0%
TCGAAGAATTCATTCATGTT+GGG + chr1_3:64535963-64535982 Msa0133260:intron 30.0%
! TAGTTTGTAACTATGCTCTT+TGG - chr1_3:64536045-64536064 None:intergenic 30.0%
TATCATATGAGTTGTACTTC+CGG + chr1_3:64536144-64536163 Msa0133260:intron 30.0%
!!! TTTTTTTTTTTTTGTGGCCG+GGG + chr1_3:64536446-64536465 Msa0133260:five_prime_UTR 30.0%
GAAAATATATGTAAGGTTCG+GGG - chr1_3:64536478-64536497 None:intergenic 30.0%
AGATATAGAGAATGTAGAGA+TGG - chr1_3:64536931-64536950 None:intergenic 30.0%
TATGCTTCAATACAATGTGT+TGG - chr1_3:64537182-64537201 None:intergenic 30.0%
!! TGTTTACTTTTCCTAACTTC+AGG + chr1_3:64537325-64537344 Msa0133260:intron 30.0%
TTTATGAACACCAAACTTGT+GGG - chr1_3:64537364-64537383 None:intergenic 30.0%
ATTTATGAACACCAAACTTG+TGG - chr1_3:64537365-64537384 None:intergenic 30.0%
AGAACTTTCTTCTTCATCTT+TGG + chr1_3:64537507-64537526 Msa0133260:CDS 30.0%
TTTGGATCATCTTAATGTCT+CGG + chr1_3:64537525-64537544 Msa0133260:CDS 30.0%
GATTTCACAGATATGACTAT+GGG - chr1_3:64537673-64537692 None:intergenic 30.0%
AGATTTCACAGATATGACTA+TGG - chr1_3:64537674-64537693 None:intergenic 30.0%
ATAGTCATATCTGTGAAATC+TGG + chr1_3:64537673-64537692 Msa0133260:intron 30.0%
! GGACTGCAATTTAAAACTAT+TGG + chr1_3:64537779-64537798 Msa0133260:intron 30.0%
! CAATTTAAAACTATTGGAGC+AGG + chr1_3:64537785-64537804 Msa0133260:intron 30.0%
GTCACATTGTTCATAAATCT+AGG + chr1_3:64537855-64537874 Msa0133260:intron 30.0%
AACCGAAATCTAAAGAAAGA+CGG - chr1_3:64537904-64537923 None:intergenic 30.0%
!! CATCATTCTATCTCTAAAAC+AGG + chr1_3:64537968-64537987 Msa0133260:intron 30.0%
! TCACGGATTATAGATATGAA+TGG - chr1_3:64538036-64538055 None:intergenic 30.0%
! ATGTAAGCTTCGATTTGTAA+CGG - chr1_3:64538198-64538217 None:intergenic 30.0%
!!! TGTTTTTGAGTATCTCTTGA+AGG - chr1_3:64538240-64538259 None:intergenic 30.0%
AACGAGTAACAATTCCTAAA+AGG - chr1_3:64538383-64538402 None:intergenic 30.0%
!!! TCACCTGTGTTATTTTCAAT+TGG - chr1_3:64538417-64538436 None:intergenic 30.0%
GTTCTAGTGTTGTATTTCTT+TGG + chr1_3:64538502-64538521 Msa0133260:CDS 30.0%
TACCATGTCTATTGTATCAA+TGG + chr1_3:64538800-64538819 Msa0133260:intron 30.0%
ACCATGTCTATTGTATCAAT+GGG + chr1_3:64538801-64538820 Msa0133260:intron 30.0%
GAAATTCTGTTTGAGTGTAA+AGG + chr1_3:64538855-64538874 Msa0133260:intron 30.0%
!! TTGAGTCCATCAGTTTTAAT+TGG + chr1_3:64538970-64538989 Msa0133260:CDS 30.0%
AAATGATCCTTAGGAATGTG+TGG - chr1_3:64533720-64533739 None:intergenic 35.0%
!! GTGTTTTTGTAGACCTTTGT+GGG - chr1_3:64533787-64533806 None:intergenic 35.0%
!! TGTGTTTTTGTAGACCTTTG+TGG - chr1_3:64533788-64533807 None:intergenic 35.0%
CAAAGGTCTACAAAAACACA+TGG + chr1_3:64533788-64533807 Msa0133260:five_prime_UTR 35.0%
!! TTGAGCTTGATTTCTAGCTT+GGG - chr1_3:64533817-64533836 None:intergenic 35.0%
!! ATTGAGCTTGATTTCTAGCT+TGG - chr1_3:64533818-64533837 None:intergenic 35.0%
ACATTCCCTATGATGTTCAT+TGG + chr1_3:64533995-64534014 Msa0133260:five_prime_UTR 35.0%
GTGTTTATCTCCATCTTCAT+CGG + chr1_3:64534029-64534048 Msa0133260:five_prime_UTR 35.0%
TGTTTATCTCCATCTTCATC+GGG + chr1_3:64534030-64534049 Msa0133260:five_prime_UTR 35.0%
TTAGAAACGAATCAACCTTG+TGG - chr1_3:64534080-64534099 None:intergenic 35.0%
GCTGAAACAATTCCAATTGT+AGG - chr1_3:64534246-64534265 None:intergenic 35.0%
! GAACTCCAGACTCTAAAAAT+CGG - chr1_3:64534440-64534459 None:intergenic 35.0%
!!! TATTTTTTCATTCGGTCGGA+AGG - chr1_3:64534625-64534644 None:intergenic 35.0%
! GGGTTAATCTAAAATTCGGT+CGG + chr1_3:64534658-64534677 Msa0133260:intron 35.0%
! TAATCTAAAATTCGGTCGGA+AGG + chr1_3:64534662-64534681 Msa0133260:intron 35.0%
!!! AGGAGTGTATTTTTGAGACT+AGG + chr1_3:64534972-64534991 Msa0133260:five_prime_UTR 35.0%
TTGTTCTTTCCAGTAACAAG+AGG + chr1_3:64535023-64535042 Msa0133260:five_prime_UTR 35.0%
ACATACCTCAACCATTTGAT+TGG - chr1_3:64535177-64535196 None:intergenic 35.0%
CATCAATGTTGTCCAAATGA+AGG - chr1_3:64535404-64535423 None:intergenic 35.0%
GGCCATAAAATCTCTTACTA+CGG + chr1_3:64535579-64535598 Msa0133260:five_prime_UTR 35.0%
! TGTAAAACGAGTCCTTTTGA+TGG - chr1_3:64535737-64535756 None:intergenic 35.0%
CGAAGAATTCATTCATGTTG+GGG + chr1_3:64535964-64535983 Msa0133260:intron 35.0%
TTGGGGACCCAATAAATTAT+TGG + chr1_3:64535981-64536000 Msa0133260:intron 35.0%
ACAAACTAACACACACTAAG+TGG + chr1_3:64536057-64536076 Msa0133260:intron 35.0%
ATCATATGAGTTGTACTTCC+GGG + chr1_3:64536145-64536164 Msa0133260:intron 35.0%
TCTAATGATCTAGCATTTCG+TGG - chr1_3:64536603-64536622 None:intergenic 35.0%
ACATATGTATCCAATGTAGC+TGG + chr1_3:64536815-64536834 Msa0133260:CDS 35.0%
GTTTAATAGCATTAGCCATG+TGG + chr1_3:64536849-64536868 Msa0133260:CDS 35.0%
TAACAAGCATTCCACGAATA+AGG + chr1_3:64536873-64536892 Msa0133260:CDS 35.0%
TTATTCTATGCCATCCATGT+TGG + chr1_3:64536950-64536969 Msa0133260:CDS 35.0%
ACATGTATTCAACTCCAACA+TGG - chr1_3:64536967-64536986 None:intergenic 35.0%
! ATCTAAGGTGTCTATCAATG+AGG - chr1_3:64537018-64537037 None:intergenic 35.0%
TATTGTCTTACTAGGATCCT+TGG - chr1_3:64537116-64537135 None:intergenic 35.0%
TGAAGCATATGTCTAGTATC+CGG + chr1_3:64537193-64537212 Msa0133260:intron 35.0%
ATACTATAACCCCACAAGTT+TGG + chr1_3:64537351-64537370 Msa0133260:CDS 35.0%
TTATGAACACCAAACTTGTG+GGG - chr1_3:64537363-64537382 None:intergenic 35.0%
GGTGTTCATAAATGTTCCAA+AGG + chr1_3:64537372-64537391 Msa0133260:CDS 35.0%
AACTAGAAGACACCGTAAAA+GGG - chr1_3:64537417-64537436 None:intergenic 35.0%
! GGTGTCTTCTAGTTGTAATT+TGG + chr1_3:64537423-64537442 Msa0133260:CDS 35.0%
CAATTAAAAATGTGGGAAGC+TGG + chr1_3:64537467-64537486 Msa0133260:CDS 35.0%
CTTAGAAATTGTGCAGAATG+TGG - chr1_3:64537568-64537587 None:intergenic 35.0%
CACATTCTGCACAATTTCTA+AGG + chr1_3:64537566-64537585 Msa0133260:CDS 35.0%
ATCATGTTCCTTTGAGTACA+TGG + chr1_3:64537647-64537666 Msa0133260:intron 35.0%
! TTTAAAACTATTGGAGCAGG+CGG + chr1_3:64537788-64537807 Msa0133260:intron 35.0%
AACAATGTGACTACATTCCT+AGG - chr1_3:64537846-64537865 None:intergenic 35.0%
CTCCGTCTTTCTTTAGATTT+CGG + chr1_3:64537899-64537918 Msa0133260:intron 35.0%
!! GGCTTTGAAATATGAGATCA+CGG - chr1_3:64538053-64538072 None:intergenic 35.0%
! GAGGTTGAAATTCTTGTTGT+TGG - chr1_3:64538074-64538093 None:intergenic 35.0%
! ACACAAACAAGTAGGAGTTT+TGG - chr1_3:64538096-64538115 None:intergenic 35.0%
! AGGAAGCATAAGATCTAACA+TGG - chr1_3:64538142-64538161 None:intergenic 35.0%
! ATCATGTTTCTCCTCCTTTT+AGG + chr1_3:64538366-64538385 Msa0133260:CDS 35.0%
GAGTAACAATTCCTAAAAGG+AGG - chr1_3:64538380-64538399 None:intergenic 35.0%
AGTGTATAACTGGACTTACA+AGG + chr1_3:64538437-64538456 Msa0133260:CDS 35.0%
! CAAGCTACCAATGTACATTT+TGG + chr1_3:64538657-64538676 Msa0133260:CDS 35.0%
TCCCATTGATACAATAGACA+TGG - chr1_3:64538805-64538824 None:intergenic 35.0%
! ACTTCGTGTCTCAATTTTCT+TGG - chr1_3:64538909-64538928 None:intergenic 35.0%
! TAGAATTTGTGCTTCTGGTT+TGG + chr1_3:64538932-64538951 Msa0133260:CDS 35.0%
TTCTTGGATGGCTAACAGTT+TGG + chr1_3:64533752-64533771 Msa0133260:five_prime_UTR 40.0%
TCTACATACTTCAGAGAGCA+AGG + chr1_3:64533838-64533857 Msa0133260:five_prime_UTR 40.0%
ATACTTCAGAGAGCAAGGTT+AGG + chr1_3:64533843-64533862 Msa0133260:intron 40.0%
TCATAGGGAATGTGAAAAGC+AGG - chr1_3:64533988-64534007 None:intergenic 40.0%
GAGCTCCAATGAACATCATA+GGG - chr1_3:64534003-64534022 None:intergenic 40.0%
AGAGCTCCAATGAACATCAT+AGG - chr1_3:64534004-64534023 None:intergenic 40.0%
ATGATGTTCATTGGAGCTCT+AGG + chr1_3:64534004-64534023 Msa0133260:five_prime_UTR 40.0%
CACAAAAGTTACCTTCCACA+AGG + chr1_3:64534062-64534081 Msa0133260:five_prime_UTR 40.0%
AAACGAATCAACCTTGTGGA+AGG - chr1_3:64534076-64534095 None:intergenic 40.0%
! TCCAGACTCTAAAAATCGGA+GGG - chr1_3:64534436-64534455 None:intergenic 40.0%
ATGGAAGAACCTCTTGTTAC+TGG - chr1_3:64535035-64535054 None:intergenic 40.0%
TCTTCCATTCTACGTCTTGT+TGG + chr1_3:64535047-64535066 Msa0133260:five_prime_UTR 40.0%
CATCACCAATCAAATGGTTG+AGG + chr1_3:64535169-64535188 Msa0133260:five_prime_UTR 40.0%
! TTTGAGGTCCTATAATGGCA+AGG + chr1_3:64535332-64535351 Msa0133260:five_prime_UTR 40.0%
CAGTAGATCCTTGCCATTAT+AGG - chr1_3:64535343-64535362 None:intergenic 40.0%
ATCTACTGCCTCTTTCTGAT+TGG + chr1_3:64535355-64535374 Msa0133260:five_prime_UTR 40.0%
GCTCAATTCCAATCAGAAAG+AGG - chr1_3:64535366-64535385 None:intergenic 40.0%
! GGCCGTAGTAAGAGATTTTA+TGG - chr1_3:64535584-64535603 None:intergenic 40.0%
! TGAGACTTTGTTGGTTGCTA+AGG - chr1_3:64536116-64536135 None:intergenic 40.0%
TTGACCAAACACTAATGACC+CGG - chr1_3:64536166-64536185 None:intergenic 40.0%
ATTGCCAAGAATCGAAGTGT+AGG - chr1_3:64536390-64536409 None:intergenic 40.0%
!! TGGAATGCTTGTTATCCACA+TGG - chr1_3:64536867-64536886 None:intergenic 40.0%
! TACATCTTACGCCTTATTCG+TGG - chr1_3:64536887-64536906 None:intergenic 40.0%
GTATTCAACTCCAACATGGA+TGG - chr1_3:64536963-64536982 None:intergenic 40.0%
ATGAGGAATAGGAAAATCCC+AGG - chr1_3:64537001-64537020 None:intergenic 40.0%
GGTGTCTATCAATGAGGAAT+AGG - chr1_3:64537012-64537031 None:intergenic 40.0%
GGCGAGATTGTAAGAATCTA+AGG - chr1_3:64537033-64537052 None:intergenic 40.0%
CAACTAGAAGACACCGTAAA+AGG - chr1_3:64537418-64537437 None:intergenic 40.0%
CATCTTAATGTCTCGGTTGA+AGG + chr1_3:64537532-64537551 Msa0133260:CDS 40.0%
GACGTTCATAGTTAAACTGC+TGG + chr1_3:64537699-64537718 Msa0133260:intron 40.0%
!! CAAACAAGTAGGAGTTTTGG+AGG - chr1_3:64538093-64538112 None:intergenic 40.0%
GATCTTATGCTTCCTGTTTC+TGG + chr1_3:64538147-64538166 Msa0133260:intron 40.0%
TGAGTTGTTGAACCAGAAAC+AGG - chr1_3:64538162-64538181 None:intergenic 40.0%
TCTCCTATCTCAGCTGTATT+AGG + chr1_3:64538297-64538316 Msa0133260:CDS 40.0%
CTGTATTAGGCCCAAATAAC+TGG + chr1_3:64538310-64538329 Msa0133260:CDS 40.0%
CAAGCCACAACCAGTTATTT+GGG - chr1_3:64538323-64538342 None:intergenic 40.0%
ACACAGGTGAAGTGTATAAC+TGG + chr1_3:64538427-64538446 Msa0133260:intron 40.0%
ACTGGACTTACAAGGTTATG+TGG + chr1_3:64538445-64538464 Msa0133260:CDS 40.0%
GCACTAAAGATTGATGAGGA+AGG - chr1_3:64538638-64538657 None:intergenic 40.0%
GCTTGCACTAAAGATTGATG+AGG - chr1_3:64538642-64538661 None:intergenic 40.0%
CCTTGCACCAAAATGTACAT+TGG - chr1_3:64538667-64538686 None:intergenic 40.0%
!! CCAATGTACATTTTGGTGCA+AGG + chr1_3:64538664-64538683 Msa0133260:intron 40.0%
GAGTGTAAAGGCAAAGATGT+TGG + chr1_3:64538867-64538886 Msa0133260:intron 40.0%
AGGCAAAGATGTTGGAGTTA+TGG + chr1_3:64538875-64538894 Msa0133260:intron 40.0%
GATGTTGGAGTTATGGTTTG+TGG + chr1_3:64538882-64538901 Msa0133260:CDS 40.0%
GTTGCTAGAATTTGTGCTTC+TGG + chr1_3:64538927-64538946 Msa0133260:CDS 40.0%
TGAAGAGCCACACATTCCTA+AGG + chr1_3:64533710-64533729 Msa0133260:five_prime_UTR 45.0%
TTGGATCTTGTTGCCCACAA+AGG + chr1_3:64533771-64533790 Msa0133260:five_prime_UTR 45.0%
ATTGTAGGCATGACCAGGAA+TGG - chr1_3:64534231-64534250 None:intergenic 45.0%
TTCCTGGTCATGCCTACAAT+TGG + chr1_3:64534231-64534250 Msa0133260:five_prime_UTR 45.0%
TTCCAATTGTAGGCATGACC+AGG - chr1_3:64534236-64534255 None:intergenic 45.0%
CATATGGAGGTGAGCAAAAC+TGG - chr1_3:64534337-64534356 None:intergenic 45.0%
CACCTCCATATGCACAAAGA+AGG + chr1_3:64534345-64534364 Msa0133260:five_prime_UTR 45.0%
TCTCGCCTTCTTTGTGCATA+TGG - chr1_3:64534353-64534372 None:intergenic 45.0%
!!! ACCCTCCGATTTTTAGAGTC+TGG + chr1_3:64534432-64534451 Msa0133260:intron 45.0%
! CTCCAGACTCTAAAAATCGG+AGG - chr1_3:64534437-64534456 None:intergenic 45.0%
GAGACCAACAAGACGTAGAA+TGG - chr1_3:64535054-64535073 None:intergenic 45.0%
!! CTGGCTTGGGCAATTATCTA+TGG + chr1_3:64535103-64535122 Msa0133260:five_prime_UTR 45.0%
! CTTTTTGCTGCACACACCAT+AGG + chr1_3:64535128-64535147 Msa0133260:five_prime_UTR 45.0%
! TTGGGGCATCACCAATCAAA+TGG + chr1_3:64535163-64535182 Msa0133260:five_prime_UTR 45.0%
!! TTTAAAGGGATTGGCTCGAG+TGG + chr1_3:64535923-64535942 Msa0133260:intron 45.0%
ACACACTAAGTGGAGAGAAG+AGG + chr1_3:64536067-64536086 Msa0133260:intron 45.0%
! TGGAGAGAAGAGGTATACTG+TGG + chr1_3:64536077-64536096 Msa0133260:intron 45.0%
ACTTCCGGGTCATTAGTGTT+TGG + chr1_3:64536159-64536178 Msa0133260:intron 45.0%
ACAGCCTACACTTCGATTCT+TGG + chr1_3:64536383-64536402 Msa0133260:five_prime_UTR 45.0%
GATCTAGCATTTCGTGGCTA+TGG - chr1_3:64536597-64536616 None:intergenic 45.0%
TGCAATCTCTCCAGCTACAT+TGG - chr1_3:64536828-64536847 None:intergenic 45.0%
TACATGTGCATGATTGCTCC+TGG + chr1_3:64536980-64536999 Msa0133260:CDS 45.0%
ACATGTGCATGATTGCTCCT+GGG + chr1_3:64536981-64537000 Msa0133260:CDS 45.0%
TACAATCTCGCCAACATGCT+CGG + chr1_3:64537041-64537060 Msa0133260:CDS 45.0%
CTGATAGTAACCGAGCATGT+TGG - chr1_3:64537054-64537073 None:intergenic 45.0%
!! CAAGGGCATCACAAGGTAAA+AGG - chr1_3:64537081-64537100 None:intergenic 45.0%
CTTGGAGAAGTTGAGCTCAA+GGG - chr1_3:64537098-64537117 None:intergenic 45.0%
GTTAGAGTCGTGTCAATGTC+CGG - chr1_3:64537215-64537234 None:intergenic 45.0%
CATTGCAGCTTGGAAACCTT+TGG - chr1_3:64537391-64537410 None:intergenic 45.0%
CAAAGGTTTCCAAGCTGCAA+TGG + chr1_3:64537389-64537408 Msa0133260:CDS 45.0%
TGTGCAGAATGTGGTCCATA+GGG - chr1_3:64537559-64537578 None:intergenic 45.0%
TTGTGCAGAATGTGGTCCAT+AGG - chr1_3:64537560-64537579 None:intergenic 45.0%
ACTATGGGCCATGTACTCAA+AGG - chr1_3:64537658-64537677 None:intergenic 45.0%
! ACTGCTGGTTGTCTTTATGC+TGG + chr1_3:64537714-64537733 Msa0133260:intron 45.0%
CTGAGATAGGAGAATCTGAG+AGG - chr1_3:64538290-64538309 None:intergenic 45.0%
TAGGCCCAAATAACTGGTTG+TGG + chr1_3:64538316-64538335 Msa0133260:CDS 45.0%
CCAAGCCACAACCAGTTATT+TGG - chr1_3:64538324-64538343 None:intergenic 45.0%
CCAAATAACTGGTTGTGGCT+TGG + chr1_3:64538321-64538340 Msa0133260:CDS 45.0%
CAACACCAACAAGATCACCA+GGG + chr1_3:64538577-64538596 Msa0133260:CDS 45.0%
TCACCAGGGTCATGGATTTA+TGG + chr1_3:64538591-64538610 Msa0133260:CDS 45.0%
GAACCATAAATCCATGACCC+TGG - chr1_3:64538597-64538616 None:intergenic 45.0%
CCTCACTTACTCTTGAGATC+AGG - chr1_3:64538690-64538709 None:intergenic 45.0%
CCTGATCTCAAGAGTAAGTG+AGG + chr1_3:64538687-64538706 Msa0133260:intron 45.0%
ATCTCAAGAGTAAGTGAGGC+AGG + chr1_3:64538691-64538710 Msa0133260:intron 45.0%
TCTCAAGAGTAAGTGAGGCA+GGG + chr1_3:64538692-64538711 Msa0133260:intron 45.0%
!!! TATATTTTCATTTTTTTTAA+TGG + chr1_3:64536489-64536508 Msa0133260:five_prime_UTR 5.0%
TTTCCTGAGACGTCCATTCC+TGG + chr1_3:64534215-64534234 Msa0133260:five_prime_UTR 50.0%
CGCCTTCTTTGTGCATATGG+AGG - chr1_3:64534350-64534369 None:intergenic 50.0%
GTAGATGGGAAGCGAAGTTC+AGG + chr1_3:64534952-64534971 Msa0133260:intron 50.0%
TGATTTCCCAGGCGTTAGAG+TGG + chr1_3:64536786-64536805 Msa0133260:CDS 50.0%
!! TTGAGCTCAAGGGCATCACA+AGG - chr1_3:64537088-64537107 None:intergenic 50.0%
CCTTGGAGAAGTTGAGCTCA+AGG - chr1_3:64537099-64537118 None:intergenic 50.0%
CCTTGAGCTCAACTTCTCCA+AGG + chr1_3:64537096-64537115 Msa0133260:CDS 50.0%
!! AAAAGGGTGCCATTGCAGCT+TGG - chr1_3:64537401-64537420 None:intergenic 50.0%
! GCTGCAATGGCACCCTTTTA+CGG + chr1_3:64537402-64537421 Msa0133260:CDS 50.0%
CTACATTCCTAGGAGCAGAG+CGG - chr1_3:64537836-64537855 None:intergenic 50.0%
CAGGCATGAGCAGATTGTGA+TGG + chr1_3:64537987-64538006 Msa0133260:intron 50.0%
! GAGCAGATTGTGATGGTGAG+TGG + chr1_3:64537994-64538013 Msa0133260:CDS 50.0%
! CAGATTGTGATGGTGAGTGG+TGG + chr1_3:64537997-64538016 Msa0133260:CDS 50.0%
GGGCCTAATACAGCTGAGAT+AGG - chr1_3:64538303-64538322 None:intergenic 50.0%
CCTGGTGATCTTGTTGGTGT+TGG - chr1_3:64538579-64538598 None:intergenic 50.0%
CCAACACCAACAAGATCACC+AGG + chr1_3:64538576-64538595 Msa0133260:CDS 50.0%
CATGACCCTGGTGATCTTGT+TGG - chr1_3:64538585-64538604 None:intergenic 50.0%
CAACAAGATCACCAGGGTCA+TGG + chr1_3:64538583-64538602 Msa0133260:CDS 50.0%
TGACCAGGAATGGACGTCTC+AGG - chr1_3:64534221-64534240 None:intergenic 55.0%
AAGGTTCGGGGTTCAAACCC+CGG - chr1_3:64536466-64536485 None:intergenic 55.0%
CTTGCTCCACTCTAACGCCT+GGG - chr1_3:64536795-64536814 None:intergenic 55.0%
TCTTGCTCCACTCTAACGCC+TGG - chr1_3:64536796-64536815 None:intergenic 55.0%
GTCTCGGTTGAAGGACCCTA+TGG + chr1_3:64537541-64537560 Msa0133260:CDS 55.0%
! GTGATGGTGAGTGGTGGAAG+TGG + chr1_3:64538003-64538022 Msa0133260:CDS 55.0%
AACCTAGCCGCTCTGCTCCT+AGG + chr1_3:64537826-64537845 Msa0133260:intron 60.0%
TTCCTAGGAGCAGAGCGGCT+AGG - chr1_3:64537831-64537850 None:intergenic 60.0%
GTCTCAGCAGCTGCGTACAG+AGG - chr1_3:64538770-64538789 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 64533591 64538995 64533591 ID=Msa0133260;Name=Msa0133260
chr1_3 mRNA 64533591 64538995 64533591 ID=Msa0133260-mRNA-1;Parent=Msa0133260;Name=Msa0133260-mRNA-1;_AED=0.18;_eAED=0.18;_QI=1927|0.7|0.63|1|0.4|0.27|11|0|455
chr1_3 exon 64533591 64533671 64533591 ID=Msa0133260-mRNA-1:exon:21718;Parent=Msa0133260-mRNA-1
chr1_3 exon 64533693 64533859 64533693 ID=Msa0133260-mRNA-1:exon:21719;Parent=Msa0133260-mRNA-1
chr1_3 exon 64533975 64534083 64533975 ID=Msa0133260-mRNA-1:exon:21720;Parent=Msa0133260-mRNA-1
chr1_3 exon 64534188 64534376 64534188 ID=Msa0133260-mRNA-1:exon:21721;Parent=Msa0133260-mRNA-1
chr1_3 exon 64534956 64535903 64534956 ID=Msa0133260-mRNA-1:exon:21722;Parent=Msa0133260-mRNA-1
chr1_3 exon 64536310 64537124 64536310 ID=Msa0133260-mRNA-1:exon:21723;Parent=Msa0133260-mRNA-1
chr1_3 exon 64537347 64537587 64537347 ID=Msa0133260-mRNA-1:exon:21724;Parent=Msa0133260-mRNA-1
chr1_3 exon 64537990 64538161 64537990 ID=Msa0133260-mRNA-1:exon:21725;Parent=Msa0133260-mRNA-1
chr1_3 exon 64538192 64538399 64538192 ID=Msa0133260-mRNA-1:exon:21726;Parent=Msa0133260-mRNA-1
chr1_3 exon 64538433 64538678 64538433 ID=Msa0133260-mRNA-1:exon:21727;Parent=Msa0133260-mRNA-1
chr1_3 exon 64538877 64538995 64538877 ID=Msa0133260-mRNA-1:exon:21728;Parent=Msa0133260-mRNA-1
chr1_3 five_prime_UTR 64533591 64533671 64533591 ID=Msa0133260-mRNA-1:five_prime_utr;Parent=Msa0133260-mRNA-1
chr1_3 five_prime_UTR 64533693 64533859 64533693 ID=Msa0133260-mRNA-1:five_prime_utr;Parent=Msa0133260-mRNA-1
chr1_3 five_prime_UTR 64533975 64534083 64533975 ID=Msa0133260-mRNA-1:five_prime_utr;Parent=Msa0133260-mRNA-1
chr1_3 five_prime_UTR 64534188 64534376 64534188 ID=Msa0133260-mRNA-1:five_prime_utr;Parent=Msa0133260-mRNA-1
chr1_3 five_prime_UTR 64534956 64535903 64534956 ID=Msa0133260-mRNA-1:five_prime_utr;Parent=Msa0133260-mRNA-1
chr1_3 five_prime_UTR 64536310 64536742 64536310 ID=Msa0133260-mRNA-1:five_prime_utr;Parent=Msa0133260-mRNA-1
chr1_3 CDS 64536743 64537124 64536743 ID=Msa0133260-mRNA-1:cds;Parent=Msa0133260-mRNA-1
chr1_3 CDS 64537347 64537587 64537347 ID=Msa0133260-mRNA-1:cds;Parent=Msa0133260-mRNA-1
chr1_3 CDS 64537990 64538161 64537990 ID=Msa0133260-mRNA-1:cds;Parent=Msa0133260-mRNA-1
chr1_3 CDS 64538192 64538399 64538192 ID=Msa0133260-mRNA-1:cds;Parent=Msa0133260-mRNA-1
chr1_3 CDS 64538433 64538678 64538433 ID=Msa0133260-mRNA-1:cds;Parent=Msa0133260-mRNA-1
chr1_3 CDS 64538877 64538995 64538877 ID=Msa0133260-mRNA-1:cds;Parent=Msa0133260-mRNA-1
Gene Sequence

>Msa0133260

ATGCTTTTGTTCCAATCATGCATGTATATATCTACAAATATTTTGATTTCCCAGGCGTTAGAGTGGAGCAAGACATATGTATCCAATGTAGCTGGAGAGATTGCAAGTTTAATAGCATTAGCCATGTGGATAACAAGCATTCCACGAATAAGGCGTAAGATGTATGAAGTATTCTTCTACACTCACCATCTCTACATTCTCTATATCTTATTCTATGCCATCCATGTTGGAGTTGAATACATGTGCATGATTGCTCCTGGGATTTTCCTATTCCTCATTGATAGACACCTTAGATTCTTACAATCTCGCCAACATGCTCGGTTACTATCAGCTCGCCTTTTACCTTGTGATGCCCTTGAGCTCAACTTCTCCAAGGATCCTAGTTTATACTATAACCCCACAAGTTTGGTGTTCATAAATGTTCCAAAGGTTTCCAAGCTGCAATGGCACCCTTTTACGGTGTCTTCTAGTTGTAATTTGGAGACGAACTATCTTAGTGTTACAATTAAAAATGTGGGAAGCTGGTCAAACAAGCTTTATCAAGAACTTTCTTCTTCATCTTTGGATCATCTTAATGTCTCGGTTGAAGGACCCTATGGACCACATTCTGCACAATTTCTAAGGCATGAGCAGATTGTGATGGTGAGTGGTGGAAGTGGCATAACTCCATTCATATCTATAATCCGTGATCTCATATTTCAAAGCCAACAACAAGAATTTCAACCTCCAAAACTCCTACTTGTTTGTGTTTTTAAAAACTATGTTGATCTAACCATGTTAGATCTTATGCTTCCTCTTCCGTTACAAATCGAAGCTTACATCACAAGAGAAAAAGAAGAACCTTCAAGAGATACTCAAAAACAAATCCAAACTATATGGTTTAAAACAAACCTCTCAGATTCTCCTATCTCAGCTGTATTAGGCCCAAATAACTGGTTGTGGCTTGGTGCTATAATCACATCATCGTTCATCATGTTTCTCCTCCTTTTAGGAATTGTTACTCGTGAAGTGTATAACTGGACTTACAAGGTTATGTGGTACATGTTTCTGATTTGTGCATGTGTATGTATATGTTCTAGTGTTGTATTTCTTTGGTGTAAGAGACAGAACACTTTAGAAAATAAGCAAATAATGAATGTAGAAGTTCCAACACCAACAAGATCACCAGGGTCATGGATTTATGGTTCAGAAAGAGAGCTTGAAAGCCTTCCTCATCAATCTTTAGTGCAAGCTACCAATGTACATTTTGGCAAAGATGTTGGAGTTATGGTTTGTGGTCCAAGAAAATTGAGACACGAAGTTGCTAGAATTTGTGCTTCTGGTTTGGCTGATAATCTTCACTTTGAGTCCATCAGTTTTAATTGGTGA
Protein sequence

>Msa0133260

MLLFQSCMYISTNILISQALEWSKTYVSNVAGEIASLIALAMWITSIPRIRRKMYEVFFYTHHLYILYILFYAIHVGVEYMCMIAPGIFLFLIDRHLRFLQSRQHARLLSARLLPCDALELNFSKDPSLYYNPTSLVFINVPKVSKLQWHPFTVSSSCNLETNYLSVTIKNVGSWSNKLYQELSSSSLDHLNVSVEGPYGPHSAQFLRHEQIVMVSGGSGITPFISIIRDLIFQSQQQEFQPPKLLLVCVFKNYVDLTMLDLMLPLPLQIEAYITREKEEPSRDTQKQIQTIWFKTNLSDSPISAVLGPNNWLWLGAIITSSFIMFLLLLGIVTREVYNWTYKVMWYMFLICACVCICSSVVFLWCKRQNTLENKQIMNVEVPTPTRSPGSWIYGSERELESLPHQSLVQATNVHFGKDVGVMVCGPRKLRHEVARICASGLADNLHFESISFNW*