AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0134480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134480 MtrunA17_Chr8g0389281 78.442 385 37 4 1 377 1 347 0.0 581
Msa0134480 MtrunA17_Chr1g0151691 59.892 369 94 4 21 377 2 328 2.38e-145 415
Msa0134480 MtrunA17_Chr1g0190891 49.747 396 138 5 1 377 1 354 1.04e-124 363
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134480 AT5G56750.1 62.304 382 98 4 1 374 1 344 2.01e-163 461
Msa0134480 AT5G56750.2 62.707 362 89 4 21 374 2 325 8.56e-155 439
Msa0134480 AT5G11790.1 59.278 388 101 7 1 375 1 344 1.11e-148 424
Msa0134480 AT2G19620.1 57.513 386 108 7 1 373 1 343 4.14e-148 423
Msa0134480 AT2G19620.2 57.923 366 98 7 21 373 2 324 2.97e-141 404
Msa0134480 AT2G19620.3 63.907 302 77 3 72 373 20 289 4.72e-138 395
Msa0134480 AT5G11790.2 66.118 304 70 3 72 375 20 290 1.03e-137 394

Find 118 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCGAAACACGCGTCTTTA+TGG 0.099306 1_3:+65990532 None:intergenic
ATTCATATCCATAATATTTA+TGG 0.134547 1_3:-65990201 Msa0134480:three_prime_UTR
CCTTATGCAAAGCACCTTCT+TGG 0.232192 1_3:-65992112 Msa0134480:CDS
AGCTTCAACCCCATGCTTTC+CGG 0.245987 1_3:+65990560 None:intergenic
GCTGGTCACCATAAATATTA+TGG 0.275588 1_3:+65990193 None:intergenic
TTTCCTTGCTCAACTTTATC+AGG 0.276417 1_3:-65991853 Msa0134480:CDS
TGATTCCGTTTCAGTTGATA+TGG 0.277119 1_3:-65994333 Msa0134480:CDS
TCTAATCCTTCTGTAATATC+AGG 0.279231 1_3:+65991488 None:intergenic
GATATGGAAAAGATCTTTCT+TGG 0.298817 1_3:-65994317 Msa0134480:CDS
TTTAGTGCGGTCTTGAATAA+AGG 0.300865 1_3:-65990271 Msa0134480:three_prime_UTR
AGCGAAACACGCGTCTTTAT+GGG 0.326221 1_3:+65990533 None:intergenic
ATGGGCTAAGTGGGCTCCTT+GGG 0.341176 1_3:+65990609 None:intergenic
AAAAGAGGTATGGTAGAGTT+TGG 0.351107 1_3:-65990396 Msa0134480:three_prime_UTR
TGATGGGGTATGGGTTGTAT+AGG 0.367144 1_3:-65990652 Msa0134480:CDS
GATGGGCTAAGTGGGCTCCT+TGG 0.387609 1_3:+65990608 None:intergenic
CAACAAGAGTTCTTGCAGTT+AGG 0.388719 1_3:-65992518 Msa0134480:CDS
AAGAAGAGAGAGAAAATTGT+TGG 0.392374 1_3:-65994434 Msa0134480:five_prime_UTR
TATTTATCTGTAAATCCAAT+TGG 0.398532 1_3:-65990235 Msa0134480:three_prime_UTR
TTCTTTGAAGTTCTTCAGAA+AGG 0.400309 1_3:-65994395 Msa0134480:five_prime_UTR
CAGGAGCATCATATTCAAAC+TGG 0.411787 1_3:-65993224 Msa0134480:CDS
ATTAAGGGGTCAATGATTGC+TGG 0.415224 1_3:+65990175 None:intergenic
TGTGTTGTTGTTTATGTGTC+AGG 0.418622 1_3:+65994472 None:intergenic
GCTTGGTGCTGTGATGTGTA+TGG 0.420350 1_3:-65992314 Msa0134480:CDS
TTCAACTTATGAAATAAAAG+AGG 0.421381 1_3:+65991876 None:intergenic
CCAAGAAGGTGCTTTGCATA+AGG 0.422664 1_3:+65992112 None:intergenic
GAGATATATATTAATAATGT+AGG 0.428351 1_3:-65990335 Msa0134480:three_prime_UTR
AAGCACCTTCTTGGACTGAA+TGG 0.428934 1_3:-65992103 Msa0134480:CDS
CATAAAGACGCGTGTTTCGC+TGG 0.429083 1_3:-65990531 Msa0134480:CDS
TCTTTGAAGTTCTTCAGAAA+GGG 0.429525 1_3:-65994394 Msa0134480:five_prime_UTR
CTTCTTTCTCCGGAAAGCAT+GGG 0.432890 1_3:-65990569 Msa0134480:CDS
ACTATGTAAATAATAATATT+CGG 0.434338 1_3:+65992557 None:intergenic
CTCCCCGGAGCTTCTTTCTC+CGG 0.435564 1_3:-65990579 Msa0134480:CDS
GAATATAGCTAGAGTCCAAT+TGG 0.436757 1_3:+65990220 None:intergenic
AGCAGCAAAGAAGCAGCCTC+TGG 0.437665 1_3:+65992669 None:intergenic
TGAAGAACTTCAAAGAAAGA+AGG 0.444254 1_3:+65994401 None:intergenic
AAATATAGGAATCGCGTTGT+TGG 0.444613 1_3:-65992152 Msa0134480:CDS
TCAAATTTGTTACATTTCTA+CGG 0.444894 1_3:-65991984 Msa0134480:CDS
TGCCCCTTCCGCTGAAGACT+TGG 0.450271 1_3:-65992468 Msa0134480:CDS
TATTTACATAGTTTCTCCTC+TGG 0.455521 1_3:-65992546 Msa0134480:CDS
CAAGAAGGTGCTTTGCATAA+GGG 0.465836 1_3:+65992113 None:intergenic
GCTTCTTTCTCCGGAAAGCA+TGG 0.467061 1_3:-65990570 Msa0134480:CDS
GGATAGCCTCAGAATGGAAT+GGG 0.467778 1_3:+65991423 None:intergenic
AAGAAGAAGAGAAAGAAAAG+AGG 0.481042 1_3:-65994519 Msa0134480:five_prime_UTR
AAGATTTAGTGCCTTGGTTG+AGG 0.482830 1_3:-65991378 Msa0134480:intron
AGAGGTATGGTAGAGTTTGG+AGG 0.485998 1_3:-65990393 Msa0134480:three_prime_UTR
AGAGAAAATTGTTGGGTGGG+TGG 0.487770 1_3:-65994426 Msa0134480:five_prime_UTR
GACTTACAAACCTCGTGTCC+AGG 0.494595 1_3:+65992615 None:intergenic
TGATAGAAGATTTAGTGCCT+TGG 0.501311 1_3:-65991384 Msa0134480:CDS
TGCCAAGTCTTCAGCGGAAG+GGG 0.501435 1_3:+65992466 None:intergenic
CTTTCCGGAGAAAGAAGCTC+CGG 0.501653 1_3:+65990575 None:intergenic
GAGGTATGGTAGAGTTTGGA+GGG 0.510380 1_3:-65990392 Msa0134480:three_prime_UTR
GAGAGAGAAAATTGTTGGGT+GGG 0.512997 1_3:-65994429 Msa0134480:five_prime_UTR
GCTTGAACTATCTCTGACTC+TGG 0.514137 1_3:+65991807 None:intergenic
CTTTGAAGTTCTTCAGAAAG+GGG 0.516116 1_3:-65994393 Msa0134480:five_prime_UTR
ATTAATAATGTAGGGAGGAG+AGG 0.517515 1_3:-65990326 Msa0134480:three_prime_UTR
TGTTTGCAGGTCCAGGCTTG+TGG 0.517552 1_3:-65990731 Msa0134480:intron
AAAGATCTTTCTTGGTGGAA+AGG 0.519204 1_3:-65994309 Msa0134480:intron
GGGCTGTGACTGAACTTGCA+TGG 0.530749 1_3:+65990629 None:intergenic
AAAGAATCGAATTGTGACAT+TGG 0.535573 1_3:-65994576 Msa0134480:five_prime_UTR
ATGGAAAAGATCTTTCTTGG+TGG 0.538424 1_3:-65994314 Msa0134480:CDS
AGATGCAAGATGGGCTAAGT+GGG 0.538699 1_3:+65990600 None:intergenic
AGCTCCGGGGAGATGCAAGA+TGG 0.541313 1_3:+65990590 None:intergenic
CTTGGTGCTGTGATGTGTAT+GGG 0.542761 1_3:-65992313 Msa0134480:CDS
TCACCATTGATCCACAAGCC+TGG 0.543442 1_3:+65990720 None:intergenic
ATATATCATATCAGTCCTCC+TGG 0.544551 1_3:-65992633 Msa0134480:CDS
GCATGCGATGCTGATACCTA+TGG 0.544656 1_3:-65990684 Msa0134480:CDS
GGTCCAGGCTTGTGGATCAA+TGG 0.547337 1_3:-65990723 Msa0134480:CDS
CAACTTTATCAGGAAGTTCG+CGG 0.549393 1_3:-65991843 Msa0134480:CDS
TGGATAGCCTCAGAATGGAA+TGG 0.551882 1_3:+65991422 None:intergenic
TTCTTTCTCCGGAAAGCATG+GGG 0.553544 1_3:-65990568 Msa0134480:CDS
TAGCCCATCTTGCATCTCCC+CGG 0.558551 1_3:-65990594 Msa0134480:CDS
CATCATATTCAAACTGGCTG+TGG 0.559367 1_3:-65993218 Msa0134480:CDS
GCAGATATGTCATGTTTCCA+AGG 0.559903 1_3:-65992705 Msa0134480:intron
AGATATATATTAATAATGTA+GGG 0.561752 1_3:-65990334 Msa0134480:three_prime_UTR
GCTCCGGGGAGATGCAAGAT+GGG 0.562541 1_3:+65990591 None:intergenic
GCAGCAAAGAAGCAGCCTCT+GGG 0.566376 1_3:+65992670 None:intergenic
AGAAGAGAGAGAAAATTGTT+GGG 0.568050 1_3:-65994433 Msa0134480:five_prime_UTR
GAGATGCAAGATGGGCTAAG+TGG 0.573247 1_3:+65990599 None:intergenic
TTTCCGGAGAAAGAAGCTCC+GGG 0.574094 1_3:+65990576 None:intergenic
CAGTTCCCCATTCCATTCTG+AGG 0.577238 1_3:-65991429 Msa0134480:CDS
GGAATCATTTGATTCTGCCA+TGG 0.577286 1_3:+65994349 None:intergenic
TCATGTGGATAGCCTCAGAA+TGG 0.577878 1_3:+65991417 None:intergenic
AGAGAGAGAAAATTGTTGGG+TGG 0.580911 1_3:-65994430 Msa0134480:five_prime_UTR
GAAAGAAAACAAATGTCTTG+CGG 0.581540 1_3:-65991622 Msa0134480:CDS
CTGCCAAGTCTTCAGCGGAA+GGG 0.583824 1_3:+65992465 None:intergenic
TAAAAGAGTGTTTACTTCAG+CGG 0.584282 1_3:-65991947 Msa0134480:CDS
GCAAGTTCAGTCACAGCCCA+AGG 0.585749 1_3:-65990625 Msa0134480:CDS
TTACATTTCTACGGCATGTG+TGG 0.586202 1_3:-65991975 Msa0134480:CDS
AGACTTGGCAGATCAAATAG+TGG 0.587192 1_3:-65992453 Msa0134480:CDS
AACTCTTGTTGAAGTTCCAG+AGG 0.590898 1_3:+65992530 None:intergenic
CCCGTAGACTATGACAGATA+CGG 0.591367 1_3:+65993193 None:intergenic
TCAACTTATGAAATAAAAGA+GGG 0.596860 1_3:+65991877 None:intergenic
TATCAAGTTTCGAAGTCATG+TGG 0.597724 1_3:+65991402 None:intergenic
TAAAACCATTCAGTCCAAGA+AGG 0.602523 1_3:+65992098 None:intergenic
TCTGCCAAGTCTTCAGCGGA+AGG 0.604002 1_3:+65992464 None:intergenic
AGGAGGCCTGATATTACAGA+AGG 0.604098 1_3:-65991494 Msa0134480:CDS
CTTCCTGATAAAGTTGAGCA+AGG 0.608911 1_3:+65991850 None:intergenic
ATGTGTATGGGAGTAACGGC+TGG 0.609518 1_3:-65992301 Msa0134480:CDS
GGTATGGTAGAGTTTGGAGG+GGG 0.612771 1_3:-65990390 Msa0134480:three_prime_UTR
TGTCGGTGGTTGTTAACCGT+AGG 0.623522 1_3:-65994647 None:intergenic
ACTTCAGCGGTACTTCAGCA+AGG 0.629263 1_3:-65991934 Msa0134480:CDS
TTGATCTGCCAAGTCTTCAG+CGG 0.631136 1_3:+65992460 None:intergenic
ATCATCAAGAGCGACATCCA+TGG 0.635085 1_3:-65994366 Msa0134480:exon
TGTGATGTGTATGGGAGTAA+CGG 0.638338 1_3:-65992305 Msa0134480:CDS
GATAGTTCAAGCTTGCCGAA+AGG 0.640690 1_3:-65991796 Msa0134480:intron
TATATATTAATAATGTAGGG+AGG 0.643617 1_3:-65990331 Msa0134480:three_prime_UTR
TTGTGGATCAATGGTGACAG+AGG 0.643977 1_3:-65990714 Msa0134480:CDS
TATCAGTCCTCCTGGACACG+AGG 0.645279 1_3:-65992625 Msa0134480:CDS
CCCATCAGAAAATACTCCAT+AGG 0.649901 1_3:+65990668 None:intergenic
CGACAGAGCTACAATCCTCA+CGG 0.660629 1_3:+65991904 None:intergenic
AGGTATGGTAGAGTTTGGAG+GGG 0.662668 1_3:-65990391 Msa0134480:three_prime_UTR
CTTGGCAGATCAAATAGTGG+AGG 0.676605 1_3:-65992450 Msa0134480:CDS
TTACAAACCTCGTGTCCAGG+AGG 0.698406 1_3:+65992618 None:intergenic
ATAGGTATCAGCATCGCATG+CGG 0.699214 1_3:+65990686 None:intergenic
CAGCAAGGTATTGTACCGTG+AGG 0.702573 1_3:-65991919 Msa0134480:CDS
GATAGCCTCAGAATGGAATG+GGG 0.713909 1_3:+65991424 None:intergenic
GGATATACATACCTCAACCA+AGG 0.717535 1_3:+65991367 None:intergenic
TTCCGGAGAAAGAAGCTCCG+GGG 0.722655 1_3:+65990577 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGGTATATTTTTTTTAAT+GGG - chr1_3:65990510-65990529 Msa0134480:exon 10.0%
!! ACTATGTAAATAATAATATT+CGG + chr1_3:65992247-65992266 None:intergenic 10.0%
!! AGATATATATTAATAATGTA+GGG - chr1_3:65994467-65994486 Msa0134480:five_prime_UTR 10.0%
!!! GAAAGGTATATTTTTTTTAA+TGG - chr1_3:65990509-65990528 Msa0134480:exon 15.0%
!!! TATATTTTTTTTAATGGGTT+TGG - chr1_3:65990515-65990534 Msa0134480:exon 15.0%
!!! ATATTTTTTTTAATGGGTTT+GGG - chr1_3:65990516-65990535 Msa0134480:exon 15.0%
!!! TTTGTTATTTTGAAGAATAA+TGG - chr1_3:65990564-65990583 Msa0134480:CDS 15.0%
!!! TTGTTATTTTGAAGAATAAT+GGG - chr1_3:65990565-65990584 Msa0134480:CDS 15.0%
!!! AATAATGGGTTTTTTTTTTT+GGG - chr1_3:65990579-65990598 Msa0134480:CDS 15.0%
!!! ATTTTGTATGTTTTTTTGAA+CGG - chr1_3:65990613-65990632 Msa0134480:CDS 15.0%
!!! TTTTTCTTCTTTCAATAATT+AGG - chr1_3:65990649-65990668 Msa0134480:CDS 15.0%
!!! TTTTTAAGTGATTAATGATT+TGG - chr1_3:65990672-65990691 Msa0134480:CDS 15.0%
!!! CTTTTACTTTATGTTTATTT+GGG - chr1_3:65991159-65991178 Msa0134480:intron 15.0%
!!! TTTTACTTTATGTTTATTTG+GGG - chr1_3:65991160-65991179 Msa0134480:intron 15.0%
!!! TTGATTTACTGATTAAAATT+TGG + chr1_3:65993250-65993269 None:intergenic 15.0%
!! TGAAGAAAAAAATAAAAAAG+TGG + chr1_3:65994348-65994367 None:intergenic 15.0%
!! GAGATATATATTAATAATGT+AGG - chr1_3:65994466-65994485 Msa0134480:five_prime_UTR 15.0%
!! ATTCATATCCATAATATTTA+TGG - chr1_3:65994600-65994619 Msa0134480:five_prime_UTR 15.0%
!!! TTTTTGTTTTTCCAGAATAA+TGG - chr1_3:65990539-65990558 Msa0134480:CDS 20.0%
!!! TTTTGTTTTTCCAGAATAAT+GGG - chr1_3:65990540-65990559 Msa0134480:CDS 20.0%
!!! GAATAATGGGTTTTTTTTTT+TGG - chr1_3:65990578-65990597 Msa0134480:CDS 20.0%
!!! GTTTTTTTTTTTGGGTTTAA+AGG - chr1_3:65990587-65990606 Msa0134480:CDS 20.0%
!!! TTTTGTATGTTTTTTTGAAC+GGG - chr1_3:65990614-65990633 Msa0134480:CDS 20.0%
!!! GATTATCTTATTTATGAATG+TGG - chr1_3:65990782-65990801 Msa0134480:intron 20.0%
!!! TATCAATTGTTTAAAGTCAA+TGG - chr1_3:65990808-65990827 Msa0134480:intron 20.0%
!!! ATCAATTGTTTAAAGTCAAT+GGG - chr1_3:65990809-65990828 Msa0134480:intron 20.0%
!! TTCAAAGAAAGAAAACAAAA+AGG + chr1_3:65990931-65990950 None:intergenic 20.0%
!!! ATTTTCTCATGTTATGAATT+TGG - chr1_3:65990963-65990982 Msa0134480:intron 20.0%
!!! TTTTCTCATGTTATGAATTT+GGG - chr1_3:65990964-65990983 Msa0134480:intron 20.0%
!! CCAAATAAACATAAAGTAAA+AGG + chr1_3:65991161-65991180 None:intergenic 20.0%
!!! CCTTTTACTTTATGTTTATT+TGG - chr1_3:65991158-65991177 Msa0134480:intron 20.0%
!!! ATGTATGTAAATACTTTTGT+TGG - chr1_3:65991185-65991204 Msa0134480:intron 20.0%
!! ATAAGGTTAAAATTCCTAAA+TGG + chr1_3:65991430-65991449 None:intergenic 20.0%
!! TATTTCCAGAGTAAATTAAA+AGG + chr1_3:65992047-65992066 None:intergenic 20.0%
!!! TGTTTTTACAGATGAAATAT+AGG - chr1_3:65992635-65992654 Msa0134480:CDS 20.0%
!! TCATTGTATCAAATCATAAA+AGG + chr1_3:65992762-65992781 None:intergenic 20.0%
!! TACAAATTATTAATCGTTTC+AGG + chr1_3:65992790-65992809 None:intergenic 20.0%
!!! TGAAACGATTAATAATTTGT+AGG - chr1_3:65992789-65992808 Msa0134480:intron 20.0%
!!! TCAAATTTGTTACATTTCTA+CGG - chr1_3:65992817-65992836 Msa0134480:intron 20.0%
!! TCAACTTATGAAATAAAAGA+GGG + chr1_3:65992927-65992946 None:intergenic 20.0%
!! TTCAACTTATGAAATAAAAG+AGG + chr1_3:65992928-65992947 None:intergenic 20.0%
!! TATATATTAATAATGTAGGG+AGG - chr1_3:65994470-65994489 Msa0134480:five_prime_UTR 20.0%
!! TATTTATCTGTAAATCCAAT+TGG - chr1_3:65994566-65994585 Msa0134480:five_prime_UTR 20.0%
!!! CTTCGTTTTTTTTTAACCTA+CGG + chr1_3:65990173-65990192 None:intergenic 25.0%
!!! TTCTTCTTGTATGGTTTTAA+TGG + chr1_3:65990264-65990283 None:intergenic 25.0%
!! TTTTCTCTCTCTTCTTTTAT+GGG + chr1_3:65990363-65990382 None:intergenic 25.0%
!! ATTTTCTCTCTCTTCTTTTA+TGG + chr1_3:65990364-65990383 None:intergenic 25.0%
! AATAACAAAACCCATTATTC+TGG + chr1_3:65990553-65990572 None:intergenic 25.0%
!!! TTTGTATGTTTTTTTGAACG+GGG - chr1_3:65990615-65990634 Msa0134480:CDS 25.0%
!!! AACAAGAAACGTTTTTTACT+TGG - chr1_3:65990852-65990871 Msa0134480:intron 25.0%
! ACTCTTGTGAAAAATTAATG+AGG - chr1_3:65990883-65990902 Msa0134480:intron 25.0%
! ACAAAAAGGATTACAGAAAA+AGG + chr1_3:65990917-65990936 None:intergenic 25.0%
!! GCATTTGTGAATTTTACATT+TGG - chr1_3:65991028-65991047 Msa0134480:intron 25.0%
!! TTTGTGAATTTTACATTTGG+TGG - chr1_3:65991031-65991050 Msa0134480:intron 25.0%
! TGTCTTCAATTATTAGAATC+TGG - chr1_3:65991286-65991305 Msa0134480:intron 25.0%
! CATTTAGAAAACAAATAGCT+TGG - chr1_3:65991397-65991416 Msa0134480:CDS 25.0%
!!! GAATTTTAACCTTATCCAAA+TGG - chr1_3:65991435-65991454 Msa0134480:CDS 25.0%
!!! ATATTCTTTGCTTTTGATGA+AGG - chr1_3:65991477-65991496 Msa0134480:CDS 25.0%
!! TGCTATGTTGATTATGATTA+TGG - chr1_3:65991543-65991562 Msa0134480:intron 25.0%
!!! TTAAGCTATTTTTCCAAACA+GGG + chr1_3:65991698-65991717 None:intergenic 25.0%
!!! ATTAAGCTATTTTTCCAAAC+AGG + chr1_3:65991699-65991718 None:intergenic 25.0%
! AATCAGCTGTAAACAATTTA+TGG - chr1_3:65991858-65991877 Msa0134480:CDS 25.0%
!!! ATTGTCCTTTTAATTTACTC+TGG - chr1_3:65992039-65992058 Msa0134480:intron 25.0%
! TGAGTTAATATTTACTTGCA+TGG - chr1_3:65992067-65992086 Msa0134480:intron 25.0%
!! ATATTTACTTGCATGGATTA+TGG - chr1_3:65992074-65992093 Msa0134480:intron 25.0%
!! TTACTGATTAAAATTTGGTC+AGG + chr1_3:65993245-65993264 None:intergenic 25.0%
! TATTAGAGAAACCATTAGAA+AGG - chr1_3:65993664-65993683 Msa0134480:intron 25.0%
! GTTCTATCATAAACCATATT+TGG + chr1_3:65993713-65993732 None:intergenic 25.0%
! ATTTAGAGATAGAAAACTGT+GGG + chr1_3:65993865-65993884 None:intergenic 25.0%
! TCTAAATCAATGATAGCAAT+TGG - chr1_3:65993878-65993897 Msa0134480:intron 25.0%
! ATGAATGTTTATCTTATAGC+AGG - chr1_3:65993976-65993995 Msa0134480:intron 25.0%
! TGAATGTTTATCTTATAGCA+GGG - chr1_3:65993977-65993996 Msa0134480:intron 25.0%
! AACTAACTATAGAAATCATG+CGG + chr1_3:65994012-65994031 None:intergenic 25.0%
! ACGATGAACATATAATAACT+TGG - chr1_3:65994041-65994060 Msa0134480:intron 25.0%
! ATAGAGAAAAAAAAGAGGTA+TGG - chr1_3:65994395-65994414 Msa0134480:five_prime_UTR 25.0%
!!! ACTTTGATTCATTTTTAGTG+CGG - chr1_3:65994517-65994536 Msa0134480:five_prime_UTR 25.0%
AAAGAATCGAATTGTGACAT+TGG - chr1_3:65990225-65990244 Msa0134480:three_prime_UTR 30.0%
AAGAAGAAGAGAAAGAAAAG+AGG - chr1_3:65990282-65990301 Msa0134480:three_prime_UTR 30.0%
AAGAAGAGAGAGAAAATTGT+TGG - chr1_3:65990367-65990386 Msa0134480:three_prime_UTR 30.0%
AGAAGAGAGAGAAAATTGTT+GGG - chr1_3:65990368-65990387 Msa0134480:three_prime_UTR 30.0%
TGAAGAACTTCAAAGAAAGA+AGG + chr1_3:65990403-65990422 None:intergenic 30.0%
!! TTCTTTGAAGTTCTTCAGAA+AGG - chr1_3:65990406-65990425 Msa0134480:three_prime_UTR 30.0%
!! TCTTTGAAGTTCTTCAGAAA+GGG - chr1_3:65990407-65990426 Msa0134480:three_prime_UTR 30.0%
! CTTTTCCATATCAACTGAAA+CGG + chr1_3:65990476-65990495 None:intergenic 30.0%
GATATGGAAAAGATCTTTCT+TGG - chr1_3:65990484-65990503 Msa0134480:three_prime_UTR 30.0%
! GTGCTGCATTTTATGTTTTT+TGG - chr1_3:65990760-65990779 Msa0134480:intron 30.0%
! GTTATGAATTTGGGATATAG+TGG - chr1_3:65990973-65990992 Msa0134480:intron 30.0%
GCAGAAATATGTGACAAATA+AGG + chr1_3:65991010-65991029 None:intergenic 30.0%
CTCATAGAAATTGTCAGATT+TGG - chr1_3:65991062-65991081 Msa0134480:intron 30.0%
GAAATTGTCAGATTTGGATT+TGG - chr1_3:65991068-65991087 Msa0134480:intron 30.0%
!! CTTTTTGCTTTTGTTCTTTG+TGG - chr1_3:65991092-65991111 Msa0134480:intron 30.0%
! CAGTATCTTAGGCTTTTTAA+AGG + chr1_3:65991242-65991261 None:intergenic 30.0%
TAGTTTGGTTGTCCAATAAA+AGG - chr1_3:65991365-65991384 Msa0134480:intron 30.0%
AGTTTGGTTGTCCAATAAAA+GGG - chr1_3:65991366-65991385 Msa0134480:intron 30.0%
CATTATGAATGTAGTCCATT+TGG + chr1_3:65991453-65991472 None:intergenic 30.0%
TAATCAACATAGCATAAGCA+GGG + chr1_3:65991537-65991556 None:intergenic 30.0%
ATAATCAACATAGCATAAGC+AGG + chr1_3:65991538-65991557 None:intergenic 30.0%
GATTATGGATTTACCATTTC+AGG - chr1_3:65991558-65991577 Msa0134480:intron 30.0%
TTACAATTTAGCGCTAAATC+TGG + chr1_3:65991664-65991683 None:intergenic 30.0%
! CTGATTTTATTAAGCTCTTC+AGG + chr1_3:65991844-65991863 None:intergenic 30.0%
TAAACTATCGTGAGACTATT+TGG + chr1_3:65991914-65991933 None:intergenic 30.0%
!! GTCAACTGATTTGAATGTAT+TGG - chr1_3:65992206-65992225 Msa0134480:intron 30.0%
TATTTACATAGTTTCTCCTC+TGG - chr1_3:65992255-65992274 Msa0134480:intron 30.0%
TACATACTGCAAAAAGAGTA+AGG + chr1_3:65992535-65992554 None:intergenic 30.0%
!!! TATGTACCCTTTTAACTTGA+CGG - chr1_3:65992549-65992568 Msa0134480:CDS 30.0%
TTCTTTCCGTCAAGTTAAAA+GGG + chr1_3:65992558-65992577 None:intergenic 30.0%
TTTCTTTCCGTCAAGTTAAA+AGG + chr1_3:65992559-65992578 None:intergenic 30.0%
CTTGACGGAAAGAAAATATT+AGG - chr1_3:65992564-65992583 Msa0134480:intron 30.0%
!!! TTGTTGATTTGTTCCTTTTC+TGG - chr1_3:65992610-65992629 Msa0134480:intron 30.0%
!!! GACTGAATGGTTTTATAACA+AGG - chr1_3:65992711-65992730 Msa0134480:intron 30.0%
!! TAAAAGAGTGTTTACTTCAG+CGG - chr1_3:65992854-65992873 Msa0134480:intron 30.0%
GAAAGAAAACAAATGTCTTG+CGG - chr1_3:65993179-65993198 Msa0134480:intron 30.0%
TCTAATCCTTCTGTAATATC+AGG + chr1_3:65993316-65993335 None:intergenic 30.0%
ATCAAATTTCGAAGTCATGT+GGG + chr1_3:65993459-65993478 None:intergenic 30.0%
TATCAAATTTCGAAGTCATG+TGG + chr1_3:65993460-65993479 None:intergenic 30.0%
ACATGACTTCGAAATTTGAT+AGG - chr1_3:65993459-65993478 Msa0134480:intron 30.0%
TTGATCTACTCTTCTTACAA+CGG + chr1_3:65993597-65993616 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - chr1_3:65993598-65993617 Msa0134480:intron 30.0%
! GTTTCTCTAATAGTTTTCCT+AGG + chr1_3:65993656-65993675 None:intergenic 30.0%
AACCATTAGAAAGGATTTAG+AGG - chr1_3:65993673-65993692 Msa0134480:intron 30.0%
TGGTTTATGATAGAACACTA+TGG - chr1_3:65993717-65993736 Msa0134480:intron 30.0%
GATTTAGAGATAGAAAACTG+TGG + chr1_3:65993866-65993885 None:intergenic 30.0%
TTATCTTATAGCAGGGAATT+CGG - chr1_3:65993984-65994003 Msa0134480:intron 30.0%
GATTTCTATAGTTAGTTGAC+CGG - chr1_3:65994015-65994034 Msa0134480:intron 30.0%
CAGAGATAGAGAAAAAAAAG+AGG - chr1_3:65994390-65994409 Msa0134480:five_prime_UTR 30.0%
CTCTTCTTCTTCTTCTTGTA+TGG + chr1_3:65990273-65990292 None:intergenic 35.0%
!! TGTGTTGTTGTTTATGTGTC+AGG + chr1_3:65990332-65990351 None:intergenic 35.0%
!! CTTTGAAGTTCTTCAGAAAG+GGG - chr1_3:65990408-65990427 Msa0134480:three_prime_UTR 35.0%
! TGATTCCGTTTCAGTTGATA+TGG - chr1_3:65990468-65990487 Msa0134480:three_prime_UTR 35.0%
ATGGAAAAGATCTTTCTTGG+TGG - chr1_3:65990487-65990506 Msa0134480:three_prime_UTR 35.0%
AAAGATCTTTCTTGGTGGAA+AGG - chr1_3:65990492-65990511 Msa0134480:three_prime_UTR 35.0%
TTGTGGTATCTGATGCAATT+TGG - chr1_3:65991109-65991128 Msa0134480:intron 35.0%
TGTGGTATCTGATGCAATTT+GGG - chr1_3:65991110-65991129 Msa0134480:intron 35.0%
TACAAAGAGGACAGTATCTT+AGG + chr1_3:65991253-65991272 None:intergenic 35.0%
AGCTTGGAAAAGTTCCATTT+AGG - chr1_3:65991413-65991432 Msa0134480:CDS 35.0%
GAATGTAGTCCATTTGGATA+AGG + chr1_3:65991447-65991466 None:intergenic 35.0%
AATCAACATAGCATAAGCAG+GGG + chr1_3:65991536-65991555 None:intergenic 35.0%
TGAATATGATGCTCCTGAAA+TGG + chr1_3:65991574-65991593 None:intergenic 35.0%
AGACTATTTGGTAGAGCTTA+TGG + chr1_3:65991902-65991921 None:intergenic 35.0%
CTCACGATAGTTTATTTCAG+TGG - chr1_3:65991920-65991939 Msa0134480:CDS 35.0%
ATATATCATATCAGTCCTCC+TGG - chr1_3:65992168-65992187 Msa0134480:intron 35.0%
! TGGAGGTTCTCAACTATTTT+AGG - chr1_3:65992368-65992387 Msa0134480:intron 35.0%
TGGACAGGATATAATTCATG+CGG + chr1_3:65992466-65992485 None:intergenic 35.0%
CTGTAAAAACATGCCAGAAA+AGG + chr1_3:65992626-65992645 None:intergenic 35.0%
AAATATAGGAATCGCGTTGT+TGG - chr1_3:65992649-65992668 Msa0134480:CDS 35.0%
TAAAACCATTCAGTCCAAGA+AGG + chr1_3:65992706-65992725 None:intergenic 35.0%
ACAATCTGCAAGGATTTGAA+AGG + chr1_3:65992739-65992758 None:intergenic 35.0%
TCATAAAAGGACAATCTGCA+AGG + chr1_3:65992749-65992768 None:intergenic 35.0%
TTTCCTTGCTCAACTTTATC+AGG - chr1_3:65992948-65992967 Msa0134480:intron 35.0%
! TCAAGTGATAGAGTACTACA+GGG + chr1_3:65993058-65993077 None:intergenic 35.0%
! TTCAAGTGATAGAGTACTAC+AGG + chr1_3:65993059-65993078 None:intergenic 35.0%
AATGTGAGTACACCAAACAA+GGG + chr1_3:65993110-65993129 None:intergenic 35.0%
! TTATTGTCTTGCTAACTTGC+AGG - chr1_3:65993287-65993306 Msa0134480:intron 35.0%
TATCAAGTTTCGAAGTCATG+TGG + chr1_3:65993402-65993421 None:intergenic 35.0%
TGATAGAAGATTTAGTGCCT+TGG - chr1_3:65993417-65993436 Msa0134480:intron 35.0%
TCAAATTTCGAAGTCATGTG+GGG + chr1_3:65993458-65993477 None:intergenic 35.0%
AAGAAGAGTAGATCAAATGG+AGG - chr1_3:65993601-65993620 Msa0134480:intron 35.0%
GACCTCTAAATCCTTTCTAA+TGG + chr1_3:65993678-65993697 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr1_3:65993697-65993716 Msa0134480:intron 35.0%
! ACAAAAGCATGTCTATAACG+AGG - chr1_3:65993818-65993837 Msa0134480:intron 35.0%
ATTATATGTTCATCGTCGTC+CGG + chr1_3:65994037-65994056 None:intergenic 35.0%
!! AACTTGGTAATGTTGTTTGC+AGG - chr1_3:65994057-65994076 Msa0134480:intron 35.0%
!! ACCTATGGAGTATTTTCTGA+TGG - chr1_3:65994132-65994151 Msa0134480:intron 35.0%
!! CCTATGGAGTATTTTCTGAT+GGG - chr1_3:65994133-65994152 Msa0134480:intron 35.0%
!! CTATGGAGTATTTTCTGATG+GGG - chr1_3:65994134-65994153 Msa0134480:intron 35.0%
! AGTATTTTCTGATGGGGTAT+GGG - chr1_3:65994140-65994159 Msa0134480:intron 35.0%
! AAAAGAGGTATGGTAGAGTT+TGG - chr1_3:65994405-65994424 Msa0134480:five_prime_UTR 35.0%
ATTAATAATGTAGGGAGGAG+AGG - chr1_3:65994475-65994494 Msa0134480:five_prime_UTR 35.0%
TTTAGTGCGGTCTTGAATAA+AGG - chr1_3:65994530-65994549 Msa0134480:five_prime_UTR 35.0%
GAATATAGCTAGAGTCCAAT+TGG + chr1_3:65994584-65994603 None:intergenic 35.0%
GCTGGTCACCATAAATATTA+TGG + chr1_3:65994611-65994630 None:intergenic 35.0%
AGAGAGAGAAAATTGTTGGG+TGG - chr1_3:65990371-65990390 Msa0134480:three_prime_UTR 40.0%
GAGAGAGAAAATTGTTGGGT+GGG - chr1_3:65990372-65990391 Msa0134480:three_prime_UTR 40.0%
GGAATCATTTGATTCTGCCA+TGG + chr1_3:65990455-65990474 None:intergenic 40.0%
TGATGCAATTTGGGTGATGT+AGG - chr1_3:65991119-65991138 Msa0134480:intron 40.0%
AGTTGAAGACAGCTACAAAG+AGG + chr1_3:65991266-65991285 None:intergenic 40.0%
!! TGTGCTTTTGCTTGCTAGTT+TGG - chr1_3:65991350-65991369 Msa0134480:intron 40.0%
GTTGTCCAATAAAAGGGCAA+GGG - chr1_3:65991372-65991391 Msa0134480:intron 40.0%
!! CAGGAGCATCATATTCAAAC+TGG - chr1_3:65991577-65991596 Msa0134480:intron 40.0%
CATCATATTCAAACTGGCTG+TGG - chr1_3:65991583-65991602 Msa0134480:intron 40.0%
TCCGTATCTGTCATAGTCTA+CGG - chr1_3:65991607-65991626 Msa0134480:CDS 40.0%
GCAGATATGTCATGTTTCCA+AGG - chr1_3:65992096-65992115 Msa0134480:CDS 40.0%
CTGGGCAGAAAAATAATCCT+TGG + chr1_3:65992116-65992135 None:intergenic 40.0%
!! AGGATTATTTTTCTGCCCAG+AGG - chr1_3:65992116-65992135 Msa0134480:CDS 40.0%
AACTCTTGTTGAAGTTCCAG+AGG + chr1_3:65992274-65992293 None:intergenic 40.0%
CAACAAGAGTTCTTGCAGTT+AGG - chr1_3:65992283-65992302 Msa0134480:CDS 40.0%
AGACTTGGCAGATCAAATAG+TGG - chr1_3:65992348-65992367 Msa0134480:intron 40.0%
GCATGAATTATATCCTGTCC+AGG - chr1_3:65992465-65992484 Msa0134480:CDS 40.0%
AATTATATCCTGTCCAGGCT+TGG - chr1_3:65992470-65992489 Msa0134480:CDS 40.0%
TGTGATGTGTATGGGAGTAA+CGG - chr1_3:65992496-65992515 Msa0134480:CDS 40.0%
!! CAAGAAGGTGCTTTGCATAA+GGG + chr1_3:65992691-65992710 None:intergenic 40.0%
TTACATTTCTACGGCATGTG+TGG - chr1_3:65992826-65992845 Msa0134480:intron 40.0%
CTTCCTGATAAAGTTGAGCA+AGG + chr1_3:65992954-65992973 None:intergenic 40.0%
CAACTTTATCAGGAAGTTCG+CGG - chr1_3:65992958-65992977 Msa0134480:intron 40.0%
CTAGCTTAGCACTAACCTTT+CGG + chr1_3:65993023-65993042 None:intergenic 40.0%
TCTTTCATCCTTCCCTTGTT+TGG - chr1_3:65993095-65993114 Msa0134480:intron 40.0%
CAATGTGAGTACACCAAACA+AGG + chr1_3:65993111-65993130 None:intergenic 40.0%
!!! TGTGTTTCTTTTTCAGCTGC+TGG - chr1_3:65993150-65993169 Msa0134480:intron 40.0%
!!! TGCCGTACGCTTATTTTTGT+TGG - chr1_3:65993346-65993365 Msa0134480:intron 40.0%
!!! GCCGTACGCTTATTTTTGTT+GGG - chr1_3:65993347-65993366 Msa0134480:intron 40.0%
CCCCAACAAAAATAAGCGTA+CGG + chr1_3:65993351-65993370 None:intergenic 40.0%
!!! CCGTACGCTTATTTTTGTTG+GGG - chr1_3:65993348-65993367 Msa0134480:intron 40.0%
AAGATTTAGTGCCTTGGTTG+AGG - chr1_3:65993423-65993442 Msa0134480:intron 40.0%
GGATATACATACCTCAACCA+AGG + chr1_3:65993437-65993456 None:intergenic 40.0%
CTTCTTACAACGGCATCTAT+GGG + chr1_3:65993587-65993606 None:intergenic 40.0%
TCTTCTTACAACGGCATCTA+TGG + chr1_3:65993588-65993607 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - chr1_3:65993626-65993645 Msa0134480:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG - chr1_3:65993685-65993704 Msa0134480:intron 40.0%
CCCATCAGAAAATACTCCAT+AGG + chr1_3:65994136-65994155 None:intergenic 40.0%
! GAGTATTTTCTGATGGGGTA+TGG - chr1_3:65994139-65994158 Msa0134480:intron 40.0%
ATTAAGGGGTCAATGATTGC+TGG + chr1_3:65994629-65994648 None:intergenic 40.0%
AGAGAAAATTGTTGGGTGGG+TGG - chr1_3:65990375-65990394 Msa0134480:three_prime_UTR 45.0%
ATCATCAAGAGCGACATCCA+TGG - chr1_3:65990435-65990454 Msa0134480:three_prime_UTR 45.0%
GGTTGTCCAATAAAAGGGCA+AGG - chr1_3:65991371-65991390 Msa0134480:intron 45.0%
! ATGTGCCCTTGCCCTTTTAT+TGG + chr1_3:65991380-65991399 None:intergenic 45.0%
CCCGTAGACTATGACAGATA+CGG + chr1_3:65991611-65991630 None:intergenic 45.0%
CCGTATCTGTCATAGTCTAC+GGG - chr1_3:65991608-65991627 Msa0134480:CDS 45.0%
CGTATCTGTCATAGTCTACG+GGG - chr1_3:65991609-65991628 Msa0134480:CDS 45.0%
TCTGGATAAGTGATCAGAGC+TGG + chr1_3:65991646-65991665 None:intergenic 45.0%
AAGTGCATTACGACCCTGTT+TGG - chr1_3:65991682-65991701 Msa0134480:intron 45.0%
TTGATCTGCCAAGTCTTCAG+CGG + chr1_3:65992344-65992363 None:intergenic 45.0%
CTTGGCAGATCAAATAGTGG+AGG - chr1_3:65992351-65992370 Msa0134480:intron 45.0%
!! CTTGGTGCTGTGATGTGTAT+GGG - chr1_3:65992488-65992507 Msa0134480:CDS 45.0%
!! CCAAGAAGGTGCTTTGCATA+AGG + chr1_3:65992692-65992711 None:intergenic 45.0%
! CCTTATGCAAAGCACCTTCT+TGG - chr1_3:65992689-65992708 Msa0134480:CDS 45.0%
AAGCACCTTCTTGGACTGAA+TGG - chr1_3:65992698-65992717 Msa0134480:CDS 45.0%
GCTTGAACTATCTCTGACTC+TGG + chr1_3:65992997-65993016 None:intergenic 45.0%
GATAGTTCAAGCTTGCCGAA+AGG - chr1_3:65993005-65993024 Msa0134480:intron 45.0%
TGAGTACACCAAACAAGGGA+AGG + chr1_3:65993106-65993125 None:intergenic 45.0%
! TTGTCTTGCTAACTTGCAGG+AGG - chr1_3:65993290-65993309 Msa0134480:intron 45.0%
AGGAGGCCTGATATTACAGA+AGG - chr1_3:65993307-65993326 Msa0134480:intron 45.0%
GATAGCCTCAGAATGGAATG+GGG + chr1_3:65993380-65993399 None:intergenic 45.0%
GGATAGCCTCAGAATGGAAT+GGG + chr1_3:65993381-65993400 None:intergenic 45.0%
TGGATAGCCTCAGAATGGAA+TGG + chr1_3:65993382-65993401 None:intergenic 45.0%
TCATGTGGATAGCCTCAGAA+TGG + chr1_3:65993387-65993406 None:intergenic 45.0%
TGATAGGAGATTTAGTGCCG+TGG - chr1_3:65993475-65993494 Msa0134480:intron 45.0%
CATGCTACATACCACAACCA+CGG + chr1_3:65993495-65993514 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG - chr1_3:65993610-65993629 Msa0134480:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - chr1_3:65993620-65993639 Msa0134480:intron 45.0%
AAAGAGGTAGAGGAAGACCT+AGG - chr1_3:65993636-65993655 Msa0134480:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr1_3:65993766-65993785 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr1_3:65993767-65993786 None:intergenic 45.0%
GCTGTCCGATCTCAAATTAG+CGG - chr1_3:65993932-65993951 Msa0134480:intron 45.0%
! GTAATGTTGTTTGCAGGTCC+AGG - chr1_3:65994063-65994082 Msa0134480:intron 45.0%
TTGTGGATCAATGGTGACAG+AGG - chr1_3:65994087-65994106 Msa0134480:intron 45.0%
ATAGGTATCAGCATCGCATG+CGG + chr1_3:65994118-65994137 None:intergenic 45.0%
! TGATGGGGTATGGGTTGTAT+AGG - chr1_3:65994149-65994168 Msa0134480:intron 45.0%
!! AGATGCAAGATGGGCTAAGT+GGG + chr1_3:65994204-65994223 None:intergenic 45.0%
! CTTCTTTCTCCGGAAAGCAT+GGG - chr1_3:65994232-65994251 Msa0134480:intron 45.0%
! TTCTTTCTCCGGAAAGCATG+GGG - chr1_3:65994233-65994252 Msa0134480:intron 45.0%
AGCGAAACACGCGTCTTTAT+GGG + chr1_3:65994271-65994290 None:intergenic 45.0%
! AGAGGTATGGTAGAGTTTGG+AGG - chr1_3:65994408-65994427 Msa0134480:five_prime_UTR 45.0%
GAGGTATGGTAGAGTTTGGA+GGG - chr1_3:65994409-65994428 Msa0134480:five_prime_UTR 45.0%
AGGTATGGTAGAGTTTGGAG+GGG - chr1_3:65994410-65994429 Msa0134480:five_prime_UTR 45.0%
! TTGGAGGGGGTGTAGATAAA+AGG - chr1_3:65994424-65994443 Msa0134480:five_prime_UTR 45.0%
! TGGAGGGGGTGTAGATAAAA+GGG - chr1_3:65994425-65994444 Msa0134480:five_prime_UTR 45.0%
TGTCATAGTCTACGGGGATC+AGG - chr1_3:65991615-65991634 Msa0134480:CDS 50.0%
TTACAAACCTCGTGTCCAGG+AGG + chr1_3:65992186-65992205 None:intergenic 50.0%
GACTTACAAACCTCGTGTCC+AGG + chr1_3:65992189-65992208 None:intergenic 50.0%
!! GCTTGGTGCTGTGATGTGTA+TGG - chr1_3:65992487-65992506 Msa0134480:CDS 50.0%
ATGTGTATGGGAGTAACGGC+TGG - chr1_3:65992500-65992519 Msa0134480:CDS 50.0%
ACTTCAGCGGTACTTCAGCA+AGG - chr1_3:65992867-65992886 Msa0134480:intron 50.0%
!! CAGCAAGGTATTGTACCGTG+AGG - chr1_3:65992882-65992901 Msa0134480:intron 50.0%
CGACAGAGCTACAATCCTCA+CGG + chr1_3:65992900-65992919 None:intergenic 50.0%
CAGTTCCCCATTCCATTCTG+AGG - chr1_3:65993372-65993391 Msa0134480:intron 50.0%
GAGATTTAGTGCCGTGGTTG+TGG - chr1_3:65993481-65993500 Msa0134480:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr1_3:65993762-65993781 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr1_3:65993768-65993787 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr1_3:65993765-65993784 Msa0134480:intron 50.0%
GTCCGATCTCAAATTAGCGG+CGG - chr1_3:65993935-65993954 Msa0134480:intron 50.0%
! CTCCGCCGCTAATTTGAGAT+CGG + chr1_3:65993940-65993959 None:intergenic 50.0%
TCACCATTGATCCACAAGCC+TGG + chr1_3:65994084-65994103 None:intergenic 50.0%
GCATGCGATGCTGATACCTA+TGG - chr1_3:65994117-65994136 Msa0134480:intron 50.0%
!! GAGATGCAAGATGGGCTAAG+TGG + chr1_3:65994205-65994224 None:intergenic 50.0%
TTTCCGGAGAAAGAAGCTCC+GGG + chr1_3:65994228-65994247 None:intergenic 50.0%
CTTTCCGGAGAAAGAAGCTC+CGG + chr1_3:65994229-65994248 None:intergenic 50.0%
GCTTCTTTCTCCGGAAAGCA+TGG - chr1_3:65994231-65994250 Msa0134480:intron 50.0%
AGCTTCAACCCCATGCTTTC+CGG + chr1_3:65994244-65994263 None:intergenic 50.0%
CAGCGAAACACGCGTCTTTA+TGG + chr1_3:65994272-65994291 None:intergenic 50.0%
CATAAAGACGCGTGTTTCGC+TGG - chr1_3:65994270-65994289 Msa0134480:intron 50.0%
GGTATGGTAGAGTTTGGAGG+GGG - chr1_3:65994411-65994430 Msa0134480:five_prime_UTR 50.0%
GCAGCAAAGAAGCAGCCTCT+GGG + chr1_3:65992134-65992153 None:intergenic 55.0%
AGCAGCAAAGAAGCAGCCTC+TGG + chr1_3:65992135-65992154 None:intergenic 55.0%
TATCAGTCCTCCTGGACACG+AGG - chr1_3:65992176-65992195 Msa0134480:intron 55.0%
TGCCAAGTCTTCAGCGGAAG+GGG + chr1_3:65992338-65992357 None:intergenic 55.0%
CTGCCAAGTCTTCAGCGGAA+GGG + chr1_3:65992339-65992358 None:intergenic 55.0%
TCTGCCAAGTCTTCAGCGGA+AGG + chr1_3:65992340-65992359 None:intergenic 55.0%
ACACATCACAGCACCAAGCC+TGG + chr1_3:65992486-65992505 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr1_3:65993754-65993773 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr1_3:65993753-65993772 Msa0134480:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr1_3:65993754-65993773 Msa0134480:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr1_3:65993760-65993779 Msa0134480:intron 55.0%
TGTTTGCAGGTCCAGGCTTG+TGG - chr1_3:65994070-65994089 Msa0134480:intron 55.0%
GGTCCAGGCTTGTGGATCAA+TGG - chr1_3:65994078-65994097 Msa0134480:intron 55.0%
GGGCTGTGACTGAACTTGCA+TGG + chr1_3:65994175-65994194 None:intergenic 55.0%
GCAAGTTCAGTCACAGCCCA+AGG - chr1_3:65994176-65994195 Msa0134480:intron 55.0%
! ATGGGCTAAGTGGGCTCCTT+GGG + chr1_3:65994195-65994214 None:intergenic 55.0%
TAGCCCATCTTGCATCTCCC+CGG - chr1_3:65994207-65994226 Msa0134480:intron 55.0%
TTCCGGAGAAAGAAGCTCCG+GGG + chr1_3:65994227-65994246 None:intergenic 55.0%
TGCCCCTTCCGCTGAAGACT+TGG - chr1_3:65992333-65992352 Msa0134480:intron 60.0%
TCACAGCACCAAGCCTGGAC+AGG + chr1_3:65992481-65992500 None:intergenic 60.0%
!! GATGGGCTAAGTGGGCTCCT+TGG + chr1_3:65994196-65994215 None:intergenic 60.0%
GCTCCGGGGAGATGCAAGAT+GGG + chr1_3:65994213-65994232 None:intergenic 60.0%
AGCTCCGGGGAGATGCAAGA+TGG + chr1_3:65994214-65994233 None:intergenic 60.0%
CTCCCCGGAGCTTCTTTCTC+CGG - chr1_3:65994222-65994241 Msa0134480:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 65990165 65994658 65990165 ID=Msa0134480;Name=Msa0134480
chr1_3 mRNA 65990165 65994658 65990165 ID=Msa0134480-mRNA-1;Parent=Msa0134480;Name=Msa0134480-mRNA-1;_AED=0.23;_eAED=0.23;_QI=289|0.77|0.6|1|0.77|0.8|10|358|377
chr1_3 exon 65990165 65990744 65990165 ID=Msa0134480-mRNA-1:exon:22522;Parent=Msa0134480-mRNA-1
chr1_3 exon 65991379 65991514 65991379 ID=Msa0134480-mRNA-1:exon:22521;Parent=Msa0134480-mRNA-1
chr1_3 exon 65991602 65991657 65991602 ID=Msa0134480-mRNA-1:exon:22520;Parent=Msa0134480-mRNA-1
chr1_3 exon 65991797 65992012 65991797 ID=Msa0134480-mRNA-1:exon:22519;Parent=Msa0134480-mRNA-1
chr1_3 exon 65992091 65992177 65992091 ID=Msa0134480-mRNA-1:exon:22518;Parent=Msa0134480-mRNA-1
chr1_3 exon 65992276 65992336 65992276 ID=Msa0134480-mRNA-1:exon:22517;Parent=Msa0134480-mRNA-1
chr1_3 exon 65992434 65992581 65992434 ID=Msa0134480-mRNA-1:exon:22516;Parent=Msa0134480-mRNA-1
chr1_3 exon 65992618 65992723 65992618 ID=Msa0134480-mRNA-1:exon:22515;Parent=Msa0134480-mRNA-1
chr1_3 exon 65993202 65993243 65993202 ID=Msa0134480-mRNA-1:exon:22514;Parent=Msa0134480-mRNA-1
chr1_3 exon 65994310 65994658 65994310 ID=Msa0134480-mRNA-1:exon:22513;Parent=Msa0134480-mRNA-1
chr1_3 five_prime_UTR 65994370 65994658 65994370 ID=Msa0134480-mRNA-1:five_prime_utr;Parent=Msa0134480-mRNA-1
chr1_3 CDS 65994310 65994369 65994310 ID=Msa0134480-mRNA-1:cds;Parent=Msa0134480-mRNA-1
chr1_3 CDS 65993202 65993243 65993202 ID=Msa0134480-mRNA-1:cds;Parent=Msa0134480-mRNA-1
chr1_3 CDS 65992618 65992723 65992618 ID=Msa0134480-mRNA-1:cds;Parent=Msa0134480-mRNA-1
chr1_3 CDS 65992434 65992581 65992434 ID=Msa0134480-mRNA-1:cds;Parent=Msa0134480-mRNA-1
chr1_3 CDS 65992276 65992336 65992276 ID=Msa0134480-mRNA-1:cds;Parent=Msa0134480-mRNA-1
chr1_3 CDS 65992091 65992177 65992091 ID=Msa0134480-mRNA-1:cds;Parent=Msa0134480-mRNA-1
chr1_3 CDS 65991797 65992012 65991797 ID=Msa0134480-mRNA-1:cds;Parent=Msa0134480-mRNA-1
chr1_3 CDS 65991602 65991657 65991602 ID=Msa0134480-mRNA-1:cds;Parent=Msa0134480-mRNA-1
chr1_3 CDS 65991379 65991514 65991379 ID=Msa0134480-mRNA-1:cds;Parent=Msa0134480-mRNA-1
chr1_3 CDS 65990523 65990744 65990523 ID=Msa0134480-mRNA-1:cds;Parent=Msa0134480-mRNA-1
chr1_3 three_prime_UTR 65990165 65990522 65990165 ID=Msa0134480-mRNA-1:three_prime_utr;Parent=Msa0134480-mRNA-1
Gene Sequence

>Msa0134480

ATGGCAGAATCAAATGATTCCGTTTCAGTTGATATGGAAAAGATCTTTCTTGGTGGAAAGGAGCATCATATTCAAACTGGCTGTGGTTCCGTATCTGTCATAATATGTCATGTTTCCAAGGATTATTTTTCTGCCCAGAGGCTGCTTCTTTGCTGCTTCATAACTTTTGCATATATCATATCAGTCCTCCTGGACACGAGGTTTGTAAAACCGAATATTATTATTTACATAGTTTCTCCTCTGGAACTTCAACAAGAGTTCTTGCAGTTAGGAGCTGCTGCGATTTGTTCTGATAATCATGCCCCTTCCGCTGAAGACTTGGCAGATCAAATAGTGGAGGTTCTCAACTATTTTAGGCTTGGTGCTGTGATGTGTATGGGAGTAACGGCTGGTGCTTATATCCTTACTCTTTTTGCAATGAAATATAGGAATCGCGTTGTTGGATTAATACTTGTATCTCCCTTATGCAAAGCACCTTCTTGGACTGAATGGTTTTATAACAAGGTGATGTCAAATTTGTTACATTTCTACGGCATGTGTGGTTTGCTAAAAGAGTGTTTACTTCAGCGGTACTTCAGCAAGGTATTGTACCGTGAGGATTGTAGCTCTGTCGTATTCCCTCTTTTATTTCATAAGTTGAATTTCCTTGCTCAACTTTATCAGGAAGTTCGCGGTAATGTTGAAGTTCCAGAGTCAGAGATAGTTCAAGCTTGCCGAAAGCTGCTGGATGAGAGAAAGAAAACAAATGTCTTGCGGTTTCTTCAAGCAATTGATCAGAGGCCTGATATTACAGAAGGATTAGAAAAATTAAACTGCCGTACGCTTATTTTTGTTGGGGACAGTTCCCCATTCCATTCTGAGGCTATCCACATGACTTCGAAACTTGATAGAAGATTTAGTGCCTTGGTTGAGGTCCAGGCTTGTGGATCAATGGTGACAGAGGAACAACCGCATGCGATGCTGATACCTATGGAGTATTTTCTGATGGGGTATGGGTTGTATAGGCCATGCAAGTTCAGTCACAGCCCAAGGAGCCCACTTAGCCCATCTTGCATCTCCCCGGAGCTTCTTTCTCCGGAAAGCATGGGGTTGAAGCTAAAGCCCATAAAGACGCGTGTTTCGCTGGAAGTTTGA
Protein sequence

>Msa0134480

MAESNDSVSVDMEKIFLGGKEHHIQTGCGSVSVIICHVSKDYFSAQRLLLCCFITFAYIISVLLDTRFVKPNIIIYIVSPLELQQEFLQLGAAAICSDNHAPSAEDLADQIVEVLNYFRLGAVMCMGVTAGAYILTLFAMKYRNRVVGLILVSPLCKAPSWTEWFYNKVMSNLLHFYGMCGLLKECLLQRYFSKVLYREDCSSVVFPLLFHKLNFLAQLYQEVRGNVEVPESEIVQACRKLLDERKKTNVLRFLQAIDQRPDITEGLEKLNCRTLIFVGDSSPFHSEAIHMTSKLDRRFSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGLYRPCKFSHSPRSPLSPSCISPELLSPESMGLKLKPIKTRVSLEV*