AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0134750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134750 MtrunA17_Chr1g0205611 97.664 856 20 0 1 856 1 856 0.0 1743
Msa0134750 MtrunA17_Chr7g0272791 64.160 851 295 6 9 856 24 867 0.0 1161
Msa0134750 MtrunA17_Chr1g0191921 63.850 852 298 6 6 856 16 858 0.0 1137
Msa0134750 MtrunA17_Chr8g0342881 57.998 869 324 11 8 856 9 856 0.0 1028
Msa0134750 MtrunA17_Chr2g0329901 57.094 874 336 10 3 856 9 863 0.0 1021
Msa0134750 MtrunA17_Chr2g0329911 56.322 870 347 10 3 856 9 861 0.0 1012
Msa0134750 MtrunA17_Chr8g0343021 56.229 875 339 10 7 856 9 864 0.0 997
Msa0134750 MtrunA17_Chr8g0344211 54.868 873 354 9 7 856 13 868 0.0 993
Msa0134750 MtrunA17_Chr8g0343031 56.150 878 341 10 4 856 7 865 0.0 991
Msa0134750 MtrunA17_Chr8g0342971 55.479 876 346 12 7 856 13 870 0.0 989
Msa0134750 MtrunA17_Chr8g0342951 56.128 873 343 9 7 856 13 868 0.0 989
Msa0134750 MtrunA17_Chr8g0342891 55.006 869 355 9 7 856 10 861 0.0 986
Msa0134750 MtrunA17_Chr5g0406871 55.782 882 345 15 1 856 5 867 0.0 981
Msa0134750 MtrunA17_Chr8g0343011 55.074 877 351 10 3 856 9 865 0.0 981
Msa0134750 MtrunA17_Chr3g0120071 54.724 868 359 9 6 856 8 858 0.0 976
Msa0134750 MtrunA17_Chr8g0342921 54.171 875 358 11 7 856 13 869 0.0 965
Msa0134750 MtrunA17_Chr8g0342931 58.453 763 301 6 97 856 1 750 0.0 942
Msa0134750 MtrunA17_Chr8g0342901 52.005 873 342 12 7 856 10 828 0.0 909
Msa0134750 MtrunA17_Chr8g0343001 48.727 864 373 13 3 856 4 807 0.0 840
Msa0134750 MtrunA17_Chr8g0342991 49.017 865 369 16 3 856 4 807 0.0 838
Msa0134750 MtrunA17_Chr8g0342981 50.482 830 358 14 39 856 35 823 0.0 807
Msa0134750 MtrunA17_Chr8g0344201 44.820 859 453 12 2 855 84 926 0.0 726
Msa0134750 MtrunA17_Chr8g0338451 42.735 819 441 13 30 834 46 850 0.0 690
Msa0134750 MtrunA17_Chr3g0118651 45.408 784 400 12 83 856 138 903 0.0 684
Msa0134750 MtrunA17_Chr8g0377101 42.326 860 454 19 13 856 83 916 0.0 679
Msa0134750 MtrunA17_Chr3g0118641 43.515 825 436 14 39 856 101 902 0.0 670
Msa0134750 MtrunA17_Chr3g0118621 43.369 837 437 15 31 856 55 865 0.0 640
Msa0134750 MtrunA17_Chr4g0033171 45.822 718 367 12 146 856 23 725 0.0 638
Msa0134750 MtrunA17_Chr4g0047281 41.476 786 407 15 79 855 153 894 0.0 621
Msa0134750 MtrunA17_Chr8g0344241 61.000 400 150 2 458 856 67 461 8.04e-179 523
Msa0134750 MtrunA17_Chr6g0471951 42.240 509 252 5 310 814 12 482 1.14e-143 433
Msa0134750 MtrunA17_Chr7g0218231 57.983 119 49 1 504 621 14 132 4.92e-40 144
Msa0134750 MtrunA17_Chr6g0468081 52.809 89 41 1 534 621 1 89 5.10e-23 94.4
Msa0134750 MtrunA17_Chr2g0277191 65.455 55 19 0 725 779 58 112 1.17e-18 82.8
Msa0134750 MtrunA17_Chr3g0137991 40.458 131 54 3 728 856 1 109 3.08e-17 78.2
Msa0134750 MtrunA17_Chr7g0272781 59.322 59 24 0 747 805 11 69 9.40e-17 76.3
Msa0134750 MtrunA17_Chr4g0047271 37.500 96 54 2 761 855 1 91 1.70e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134750 AT3G22400.1 68.360 866 262 6 1 856 23 886 0.0 1269
Msa0134750 AT1G55020.1 62.911 852 303 7 7 856 19 859 0.0 1128
Msa0134750 AT1G17420.1 43.911 854 459 14 6 856 83 919 0.0 706
Msa0134750 AT1G72520.1 43.977 855 458 15 6 856 89 926 0.0 706
Msa0134750 AT3G45140.1 43.365 844 424 19 28 856 92 896 0.0 662
Msa0134750 AT3G45140.2 45.431 777 384 16 95 856 3 754 0.0 657
Msa0134750 AT1G67560.1 40.772 829 459 15 38 856 111 917 0.0 624

Find 228 sgRNAs with CRISPR-Local

Find 822 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTGATGGATTGGAAATA+TGG 0.195211 1_3:+66341398 Msa0134750:CDS
AATGAGCTTGGACTATTTAA+AGG 0.196439 1_3:-66342442 None:intergenic
CCAACACCTCTGATTATTCT+AGG 0.202417 1_3:+66342028 Msa0134750:CDS
GCAGAGTTCAATTCTAAATA+AGG 0.214356 1_3:+66334972 Msa0134750:five_prime_UTR
AATCATGCACCATTATTATA+TGG 0.217985 1_3:+66341596 Msa0134750:CDS
CCATTTCTGTTCTTCAAACT+TGG 0.226207 1_3:-66341973 None:intergenic
CTGTTTGTAGCTATTATAAA+TGG 0.235592 1_3:-66340947 None:intergenic
TATTGCCTTTGCATATTCTA+AGG 0.236092 1_3:-66342544 None:intergenic
TTGCTTGGATGGAACTGTTT+TGG 0.264526 1_3:-66340354 None:intergenic
GCTCAGTTCCAAACTCTTCT+TGG 0.275910 1_3:+66341784 Msa0134750:CDS
AAGCTGGACCCAAGTGTTTA+TGG 0.279198 1_3:+66340328 Msa0134750:CDS
TTACTGTCTTGAGGTAAAAT+TGG 0.280689 1_3:-66336793 None:intergenic
GAACATAAATGTTTAGATTC+AGG 0.281536 1_3:-66339533 None:intergenic
TGAGGGTCATGGCGACTTAA+AGG 0.288673 1_3:+66341528 Msa0134750:CDS
TTGCTATTGCTAACCTGTTT+TGG 0.294946 1_3:-66339411 None:intergenic
CGACTAACCGTTGGACGATT+TGG 0.306665 1_3:-66341679 None:intergenic
CATGAGAAGATGGGAGTTCC+AGG 0.310878 1_3:+66336740 Msa0134750:CDS
AATGTCTAATTTGCAAGAAA+TGG 0.311515 1_3:-66342596 None:intergenic
GATTATGCACGTCCTGTTAT+TGG 0.313044 1_3:+66339335 Msa0134750:CDS
ACACTAGACATGACACTTAC+AGG 0.318567 1_3:-66342272 None:intergenic
AATTCTCAGTTACATTTGAT+TGG 0.321925 1_3:+66336714 Msa0134750:CDS
AACACTTGGGTCCAGCTTGC+TGG 0.325774 1_3:-66340323 None:intergenic
TGACACCAAAGCAAAGTCTT+TGG 0.333137 1_3:-66342133 None:intergenic
TTCTATGTGCTTTGCTTGGA+TGG 0.334407 1_3:-66340365 None:intergenic
TTGAAGTAGTGTTTAGGTAT+TGG 0.337605 1_3:+66335169 Msa0134750:intron
CTGAACCATTGGCAGCATTT+AGG 0.343244 1_3:+66341893 Msa0134750:CDS
GCTCTTGAAGCCACATTTCA+AGG 0.348885 1_3:+66341000 Msa0134750:CDS
CTTTAGATTGAAGGCGTGTT+TGG 0.354996 1_3:+66342178 Msa0134750:three_prime_UTR
CTCAACTTGCGCAGTGGCTC+CGG 0.379170 1_3:-66339200 None:intergenic
AGAAAGGCAAAGGTGATAAA+AGG 0.379868 1_3:+66342569 Msa0134750:three_prime_UTR
TCGACTGAAGAGGTTTATCT+TGG 0.381313 1_3:+66341838 Msa0134750:CDS
AGAGAACTTGTTAGGAATGA+TGG 0.388843 1_3:+66339780 Msa0134750:CDS
TCCAATCCATCAACAGCAAA+AGG 0.389933 1_3:-66341391 None:intergenic
TATGCTGCTGTCAATGATTC+CGG 0.392299 1_3:+66340798 Msa0134750:CDS
ATGACACACCAAGAAGAGTT+TGG 0.394806 1_3:-66341792 None:intergenic
AGTGTTACTGCTCCTGATCC+AGG 0.395801 1_3:+66335356 Msa0134750:CDS
CCAAGTTTGAAGAACAGAAA+TGG 0.396374 1_3:+66341973 Msa0134750:CDS
TTTAATGAAGAAAAGCTTGT+TGG 0.401300 1_3:+66335256 Msa0134750:CDS
ATAACAGGACGTGCATAATC+TGG 0.402270 1_3:-66339332 None:intergenic
TCAATTCTAGTCTTCATTTG+TGG 0.405339 1_3:-66341565 None:intergenic
ATTCGTAATACTTTCTGAAC+TGG 0.407877 1_3:+66342462 Msa0134750:three_prime_UTR
CATTTCTGTTCTTCAAACTT+GGG 0.408863 1_3:-66341972 None:intergenic
CCCTCCGTGGTAAAGGGATT+GGG 0.410795 1_3:+66339240 Msa0134750:CDS
GTTCCAAGAGATGAACAGTT+TGG 0.412030 1_3:+66339552 Msa0134750:CDS
GTTCTTCCTCGACGTGGATA+AGG 0.412854 1_3:-66339374 None:intergenic
TGGAGGACTGATGAGGAGTT+TGG 0.413208 1_3:+66339950 Msa0134750:CDS
GAGTTGCAAACAAAAGTTAC+AGG 0.414236 1_3:-66336842 None:intergenic
TTTCATGCAGCTGTGAACTT+TGG 0.414934 1_3:+66341631 Msa0134750:CDS
TGCCATCATCTTGTAGAAAC+AGG 0.415749 1_3:-66340647 None:intergenic
TGAATGTACCCACATATGTT+TGG 0.419253 1_3:-66342214 None:intergenic
ATTCTCAGTTACATTTGATT+GGG 0.419719 1_3:+66336715 Msa0134750:CDS
TTGGGAAACAGAAGAGTATA+AGG 0.420916 1_3:-66342009 None:intergenic
ACCCTCCGTGGTAAAGGGAT+TGG 0.422875 1_3:+66339239 Msa0134750:CDS
CCATGAGGGCTATTTGAATC+TGG 0.424740 1_3:-66341343 None:intergenic
CTTGCTACCCTCCGTGGTAA+AGG 0.427794 1_3:+66339233 Msa0134750:CDS
TAGCAAGAATTCAAAGAGAA+TGG 0.431016 1_3:-66342101 None:intergenic
TTTGGAAGAGAAATGCTTGC+TGG 0.431144 1_3:+66339968 Msa0134750:CDS
GCATAATCTGGACCATCATC+TGG 0.433208 1_3:-66339320 None:intergenic
TGACCAAACTGTTCATCTCT+TGG 0.434284 1_3:-66339555 None:intergenic
TCAGCATCTGAAGTCCAATC+AGG 0.434438 1_3:-66341874 None:intergenic
CATAAATATCAAGTACATCT+TGG 0.438116 1_3:-66339686 None:intergenic
TTGCTACCCTCCGTGGTAAA+GGG 0.442904 1_3:+66339234 Msa0134750:CDS
AGTCGTCCACATACCAAAAC+AGG 0.445120 1_3:+66339398 Msa0134750:CDS
AGAAGCCACCCATATAATAA+TGG 0.446648 1_3:-66341605 None:intergenic
TTCACTCAAATCCGTCGCTC+AGG 0.447395 1_3:+66339605 Msa0134750:CDS
TCAAACCAAAGACTTTGCTT+TGG 0.447658 1_3:+66342128 Msa0134750:three_prime_UTR
TGATTGGGAGCATGAGAAGA+TGG 0.450644 1_3:+66336730 Msa0134750:CDS
TGTAGACGGCGAATGATAAC+AGG 0.451680 1_3:-66339998 None:intergenic
TCTAGGGAGGGTGGACTCAC+TGG 0.452810 1_3:+66342045 Msa0134750:CDS
GACAGACAGTAGACCCTGAT+TGG 0.453708 1_3:+66341860 Msa0134750:CDS
TATTAGCAAAGGGGCTGAAA+GGG 0.454636 1_3:+66336618 Msa0134750:intron
ACATGGAAAAGTGGCATGCT+TGG 0.457740 1_3:+66336643 Msa0134750:CDS
GTCAAAGTTTAGAGGGAATG+AGG 0.457958 1_3:-66342623 None:intergenic
GAGGGTGGACTCACTGGTAA+AGG 0.459557 1_3:+66342051 Msa0134750:CDS
GCTAACTAGTTGATGATATC+CGG 0.459666 1_3:-66340817 None:intergenic
GAACGTTTGATTTGATGTCA+TGG 0.461854 1_3:-66335283 None:intergenic
GTCTTCAAATTATCATATGT+TGG 0.462320 1_3:+66342411 Msa0134750:three_prime_UTR
GATGTACTTGATATTTATGA+AGG 0.463379 1_3:+66339690 Msa0134750:CDS
TCATTCAGACACTCTAGTCT+TGG 0.464247 1_3:-66342371 None:intergenic
GAAAGTATTACGAATGAGCT+TGG 0.464361 1_3:-66342454 None:intergenic
GATTGGGAGCATGAGAAGAT+GGG 0.465067 1_3:+66336731 Msa0134750:CDS
TACTCTGGTGTACCTTGCTC+AGG 0.466421 1_3:-66341712 None:intergenic
GGCTTCAAGAGCTTATGAAT+TGG 0.467742 1_3:-66340989 None:intergenic
CGTGTCCTGGAATGTCATCT+AGG 0.470457 1_3:-66336817 None:intergenic
ATCATGCACCATTATTATAT+GGG 0.471863 1_3:+66341597 Msa0134750:CDS
TTTCCCTGGTAAATTTGCAT+TGG 0.472021 1_3:+66341093 Msa0134750:CDS
CTAGAATAATCAGAGGTGTT+GGG 0.474495 1_3:-66342027 None:intergenic
TTTCTGATTATGAAAGCTCC+TGG 0.475739 1_3:-66336758 None:intergenic
TCACCGACACTTTAGATTGA+AGG 0.476255 1_3:+66342169 Msa0134750:three_prime_UTR
CAAGTTTGAAGAACAGAAAT+GGG 0.479323 1_3:+66341974 Msa0134750:CDS
CCTAGAATAATCAGAGGTGT+TGG 0.480588 1_3:-66342028 None:intergenic
TTTGGCAGGTAACCTGCATA+AGG 0.481527 1_3:-66341661 None:intergenic
CTTGGGTCCAGCTTGCTGGC+AGG 0.483218 1_3:-66340319 None:intergenic
GACTTCAGATGCTGAACCAT+TGG 0.484611 1_3:+66341882 Msa0134750:CDS
TACCTCTTGAGCAGATTAGC+AGG 0.485331 1_3:-66341166 None:intergenic
TTGGAAGAGAAATGCTTGCT+GGG 0.486947 1_3:+66339969 Msa0134750:CDS
GTAACCCTAGATGACATTCC+AGG 0.492472 1_3:+66336812 Msa0134750:CDS
TGTTGATGGATTGGAAATAT+GGG 0.500247 1_3:+66341399 Msa0134750:CDS
ATTTCCAATGCAAATTTACC+AGG 0.500259 1_3:-66341097 None:intergenic
CACATAGAAAATAGTTTAGA+CGG 0.501898 1_3:+66340379 Msa0134750:CDS
CTATGCATGCTACAATGACT+TGG 0.502290 1_3:+66339292 Msa0134750:CDS
GAGTTTATTCTACTTAGGTA+TGG 0.503850 1_3:-66340591 None:intergenic
TAACCGTTGGACGATTTGGC+AGG 0.504486 1_3:-66341675 None:intergenic
ATTTCCTCCTGCCAGCAAGC+TGG 0.504571 1_3:+66340312 Msa0134750:CDS
AAAGTTACAGGACCGTGTCC+TGG 0.504639 1_3:-66336830 None:intergenic
GTACGTAACAAGAAGAATCA+TGG 0.508161 1_3:+66335196 Msa0134750:exon
TATATACCTTTGATCACGTC+AGG 0.508817 1_3:-66339828 None:intergenic
AGGCATACACTTATCAATGC+TGG 0.509065 1_3:+66341049 Msa0134750:CDS
TTACTATGCAAAGGTCCACT+TGG 0.509317 1_3:-66339726 None:intergenic
TGTTCTAGTGGCATAAGTCT+TGG 0.510087 1_3:-66340622 None:intergenic
TGTTGTTCACCTTGTGGATG+AGG 0.510839 1_3:-66340702 None:intergenic
TATGGGATGCAATTGAAACT+TGG 0.511065 1_3:+66341416 Msa0134750:CDS
TTGAGAATAATATCATGAAA+AGG 0.511936 1_3:+66341941 Msa0134750:CDS
CCTTTGATCACGTCAGGCAC+AGG 0.514728 1_3:-66339822 None:intergenic
TAAACTTTCTTACTTGTAGA+CGG 0.515365 1_3:-66340012 None:intergenic
TTTGGACAATACCCTTATGC+AGG 0.516651 1_3:+66341649 Msa0134750:CDS
TGGAGGGTCATAATGTCATA+TGG 0.519668 1_3:-66334947 None:intergenic
TGGTAGAGTTTATTCTACTT+AGG 0.520535 1_3:-66340596 None:intergenic
CAACACCTCTGATTATTCTA+GGG 0.521711 1_3:+66342029 Msa0134750:CDS
GCTGCTACTCCTTCATGTGA+TGG 0.522089 1_3:-66340750 None:intergenic
CGTCACGAACCAAACATATG+TGG 0.527411 1_3:+66342205 Msa0134750:three_prime_UTR
CCAGATTCAAATAGCCCTCA+TGG 0.529426 1_3:+66341343 Msa0134750:CDS
TCAAAGAGAATGGTTTCAGA+TGG 0.529655 1_3:-66342091 None:intergenic
TCATGTGTGTAACGATGAGT+AGG 0.529926 1_3:-66336875 None:intergenic
TCACACAGAGATCTAAGCTC+TGG 0.533691 1_3:-66339636 None:intergenic
GTTTCAGATGGATATGCTGT+TGG 0.534874 1_3:-66342079 None:intergenic
AGCAGCCACCGTGTGGCAGT+TGG 0.535364 1_3:+66340767 Msa0134750:CDS
TTATTAGCAAAGGGGCTGAA+AGG 0.536922 1_3:+66336617 Msa0134750:intron
ATGCAAAGGCAATACAAGAA+AGG 0.538599 1_3:+66342553 Msa0134750:three_prime_UTR
GACTCAAGCTCTTCATACTC+TGG 0.539130 1_3:-66341727 None:intergenic
ATGACTATGAACTCCAACTC+TGG 0.543976 1_3:+66341488 Msa0134750:CDS
CCAATCCATCAACAGCAAAA+GGG 0.547802 1_3:-66341390 None:intergenic
CCCAATCCCTTTACCACGGA+GGG 0.549341 1_3:-66339240 None:intergenic
TACTATGCAAAGGTCCACTT+GGG 0.549633 1_3:-66339725 None:intergenic
TTTAGAATTGAACTCTGCAG+TGG 0.550510 1_3:-66334967 None:intergenic
AGTGGCATAAGTCTTGGTGT+TGG 0.551056 1_3:-66340616 None:intergenic
GGACTTCTTTCCACCAGAGT+TGG 0.552594 1_3:-66341501 None:intergenic
AGAGTATAAGGCAATTTCAC+TGG 0.553038 1_3:-66341997 None:intergenic
TTTGGTCTCCATAAACACTT+GGG 0.553303 1_3:-66340336 None:intergenic
TATGCACGTCCTGTTATTGG+TGG 0.553422 1_3:+66339338 Msa0134750:CDS
CTCCTGTTTCTACAAGATGA+TGG 0.553973 1_3:+66340645 Msa0134750:CDS
ATCATCAACTAGTTAGCCAT+TGG 0.556688 1_3:+66340823 Msa0134750:CDS
GAATTGAACTCTGCAGTGGA+GGG 0.560537 1_3:-66334963 None:intergenic
GTAGTGTTTAGGTATTGGCT+TGG 0.560740 1_3:+66335174 Msa0134750:intron
TTGGCAGGTAACCTGCATAA+GGG 0.562312 1_3:-66341660 None:intergenic
TTTCAGATGGATATGCTGTT+GGG 0.562946 1_3:-66342078 None:intergenic
AAGTGGCATGCTTGGAGAGG+TGG 0.564306 1_3:+66336651 Msa0134750:CDS
AGAATTGAACTCTGCAGTGG+AGG 0.564548 1_3:-66334964 None:intergenic
CACATATGTTTGGTTCGTGA+CGG 0.565565 1_3:-66342204 None:intergenic
GTCTAGGCATTCGACTGAAG+AGG 0.565700 1_3:+66341828 Msa0134750:CDS
CATTGATAGAAGTTCTGTCT+AGG 0.566059 1_3:+66341812 Msa0134750:CDS
AGCTTGGACTATTTAAAGGA+AGG 0.567876 1_3:-66342438 None:intergenic
GACTTGGGAACTCCAGATGA+TGG 0.568774 1_3:+66339308 Msa0134750:CDS
GATTGGGAAACTTAATGAGT+GGG 0.571518 1_3:+66339256 Msa0134750:CDS
CGTCAGGCACAGGGAATCTG+AGG 0.571634 1_3:-66339812 None:intergenic
TGGAAAGAAGTCCGCAATGA+GGG 0.572321 1_3:+66341511 Msa0134750:CDS
ATGGGATGCAATTGAAACTT+GGG 0.572488 1_3:+66341417 Msa0134750:CDS
GAAAGGGAAACATGGAAAAG+TGG 0.573606 1_3:+66336634 Msa0134750:CDS
CCTGTGCCTGACGTGATCAA+AGG 0.574820 1_3:+66339822 Msa0134750:CDS
ACATAGAAAATAGTTTAGAC+GGG 0.577772 1_3:+66340380 Msa0134750:CDS
GATAAGTGTATGCCTAGCTA+AGG 0.581024 1_3:-66341041 None:intergenic
GCTCCATGTTGTTCACCTTG+TGG 0.582232 1_3:-66340708 None:intergenic
TGCATATAAATGCCTTAGCT+AGG 0.583152 1_3:+66341029 Msa0134750:CDS
ACCTCTGATTATTCTAGGGA+GGG 0.585554 1_3:+66342033 Msa0134750:CDS
CATCTAGGGTTACTGTCTTG+AGG 0.585735 1_3:-66336802 None:intergenic
ATGCACCATTATTATATGGG+TGG 0.585985 1_3:+66341600 Msa0134750:CDS
CATCCACAAGGTGAACAACA+TGG 0.588457 1_3:+66340705 Msa0134750:CDS
TTGTAGCTAGTAAGACTGCA+TGG 0.588566 1_3:+66339930 Msa0134750:intron
AAGCTTAATTCAATAGCAAG+TGG 0.589339 1_3:-66340678 None:intergenic
GTGTCCTGGAATGTCATCTA+GGG 0.589851 1_3:-66336816 None:intergenic
GGGTCCAGCTTGCTGGCAGG+AGG 0.590471 1_3:-66340316 None:intergenic
ATCGTCCAACGGTTAGTCGT+AGG 0.590754 1_3:+66341683 Msa0134750:CDS
TGCCTGCTAATCTGCTCAAG+AGG 0.591981 1_3:+66341164 Msa0134750:CDS
CACCTCTGATTATTCTAGGG+AGG 0.592228 1_3:+66342032 Msa0134750:CDS
TATGCAAAGGTCCACTTGGG+AGG 0.595917 1_3:-66339722 None:intergenic
GAAGTCCGCAATGAGGGTCA+TGG 0.598469 1_3:+66341517 Msa0134750:CDS
ACTATGAACTCCAACTCTGG+TGG 0.599037 1_3:+66341491 Msa0134750:CDS
TCTTGAGGTAAAATTGGCTA+TGG 0.600403 1_3:-66336787 None:intergenic
TAGAAACAGGAGTGTTCTAG+TGG 0.602943 1_3:-66340634 None:intergenic
TCTTCTCTCAACTTGCGCAG+TGG 0.608433 1_3:-66339206 None:intergenic
AGGCAATACAAGAAAGGCAA+AGG 0.609221 1_3:+66342559 Msa0134750:three_prime_UTR
AAGGGGCTGAAAGGGAAACA+TGG 0.613623 1_3:+66336626 Msa0134750:CDS
CAGCATCTGAAGTCCAATCA+GGG 0.613932 1_3:-66341873 None:intergenic
TCTGATTATTCTAGGGAGGG+TGG 0.616659 1_3:+66342036 Msa0134750:CDS
TAAATTTGCATTGGAAATGT+CGG 0.617266 1_3:+66341102 Msa0134750:CDS
CGTAGGTTTATGCCTGAGCA+AGG 0.621400 1_3:+66341700 Msa0134750:CDS
TGGAAGCAAAACCTGAGCGA+CGG 0.624168 1_3:-66339616 None:intergenic
TTTCCAATGCAAATTTACCA+GGG 0.625740 1_3:-66341096 None:intergenic
TATGCATGCTACAATGACTT+GGG 0.625848 1_3:+66339293 Msa0134750:CDS
CTTTGATCACGTCAGGCACA+GGG 0.626045 1_3:-66339821 None:intergenic
AAAATCCTTAGAATATGCAA+AGG 0.628506 1_3:+66342539 Msa0134750:three_prime_UTR
GCGACTTAAAGGATAGGTCA+TGG 0.629220 1_3:+66341539 Msa0134750:CDS
TTATCTTCCATGTGATACAC+CGG 0.631553 1_3:+66339181 Msa0134750:CDS
AATCGCCTAAATGCTGCCAA+TGG 0.632305 1_3:-66341898 None:intergenic
ATACACTTATCAATGCTGGA+GGG 0.636307 1_3:+66341053 Msa0134750:CDS
AGTGGCTCCGGTGTATCACA+TGG 0.636429 1_3:-66339188 None:intergenic
CATACACTTATCAATGCTGG+AGG 0.637914 1_3:+66341052 Msa0134750:CDS
GGATTGGGAAACTTAATGAG+TGG 0.639444 1_3:+66339255 Msa0134750:CDS
ACGCCTTCAATCTAAAGTGT+CGG 0.639497 1_3:-66342172 None:intergenic
GACTGCATGGAGGACTGATG+AGG 0.640401 1_3:+66339943 Msa0134750:CDS
AGTCGCCATGACCCTCATTG+CGG 0.642860 1_3:-66341522 None:intergenic
TGCTTTAGCCAACTGCCACA+CGG 0.644354 1_3:-66340775 None:intergenic
GTTTCCCAATCCCTTTACCA+CGG 0.644963 1_3:-66339244 None:intergenic
GAAGAACTTGCTACCCTCCG+TGG 0.645545 1_3:+66339227 Msa0134750:CDS
CTGTGGGAATGAAAGAGCAA+AGG 0.646874 1_3:+66342496 Msa0134750:three_prime_UTR
TGGAAGAGAAATGCTTGCTG+GGG 0.650436 1_3:+66339970 Msa0134750:CDS
CATGTGTGTAACGATGAGTA+GGG 0.652673 1_3:-66336874 None:intergenic
GTCACGAACCAAACATATGT+GGG 0.654782 1_3:+66342206 Msa0134750:three_prime_UTR
TACACTTATCAATGCTGGAG+GGG 0.655663 1_3:+66341054 Msa0134750:CDS
CTAGATGACATTCCAGGACA+CGG 0.658294 1_3:+66336818 Msa0134750:CDS
TTCACTATGAAGTACTGACA+CGG 0.658854 1_3:-66342295 None:intergenic
TCCCAATCCCTTTACCACGG+AGG 0.660448 1_3:-66339241 None:intergenic
TGCATTGTATCCTTGAAATG+TGG 0.660791 1_3:-66341010 None:intergenic
GTGGAAAGAAGTCCGCAATG+AGG 0.664613 1_3:+66341510 Msa0134750:CDS
AAGTTTCCTTATCCACGTCG+AGG 0.665623 1_3:+66339368 Msa0134750:CDS
CGACTAGTTCTTCCTCGACG+TGG 0.666072 1_3:-66339380 None:intergenic
GTCATGGCGACTTAAAGGAT+AGG 0.670364 1_3:+66341533 Msa0134750:CDS
AGACGGGCTAACAATAGATG+AGG 0.673101 1_3:+66340396 Msa0134750:CDS
TTACCTGCCAAATCGTCCAA+CGG 0.676858 1_3:+66341672 Msa0134750:CDS
ATAAACCTACGACTAACCGT+TGG 0.677401 1_3:-66341688 None:intergenic
GTGTGTTATTATTAGCAAAG+GGG 0.681021 1_3:+66336609 Msa0134750:intron
AAGGAGTAGCAGCCACCGTG+TGG 0.681369 1_3:+66340760 Msa0134750:CDS
ACCCTCCCTAGAATAATCAG+AGG 0.688724 1_3:-66342034 None:intergenic
TTAAGCTTACCTCATCCACA+AGG 0.695542 1_3:+66340693 Msa0134750:CDS
GAAAAGTGGCATGCTTGGAG+AGG 0.698902 1_3:+66336648 Msa0134750:CDS
ACTTAAAGGATAGGTCATGG+TGG 0.760119 1_3:+66341542 Msa0134750:CDS
TTTAGCCAACTGCCACACGG+TGG 0.765531 1_3:-66340772 None:intergenic
TAGCTAGTAAGACTGCATGG+AGG 0.781786 1_3:+66339933 Msa0134750:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAATATAAAATTTAA+TGG - chr1_3:66335991-66336010 None:intergenic 0.0%
!! AATTAAAATATAAAATTTAA+TGG - chr1_3:66335991-66336010 None:intergenic 0.0%
!! GTTAAATTAATTAAAAAGTA+GGG - chr1_3:66335692-66335711 None:intergenic 10.0%
!! AGTTAAATTAATTAAAAAGT+AGG - chr1_3:66335693-66335712 None:intergenic 10.0%
!! TTAAATATAAACAAAATAGA+AGG - chr1_3:66336050-66336069 None:intergenic 10.0%
!!! TTAGATTTTTTGATTAAATT+TGG - chr1_3:66336082-66336101 None:intergenic 10.0%
!!! TTTATATCTTAAAAATTTTG+TGG - chr1_3:66337946-66337965 None:intergenic 10.0%
!!! ACAAAATTTTTAAGATATAA+AGG + chr1_3:66337945-66337964 Msa0134750:intron 10.0%
!!! ATAACTTTTTTTTTTTTTTG+AGG - chr1_3:66338015-66338034 None:intergenic 10.0%
!!! ATCTTTTAAATATAATTCAT+TGG + chr1_3:66338427-66338446 Msa0134750:intron 10.0%
!! AAAAAAAGATAATACTAATA+TGG + chr1_3:66338542-66338561 Msa0134750:intron 10.0%
!!! AATAAAAAAAGTCATTTTTT+TGG + chr1_3:66338624-66338643 Msa0134750:intron 10.0%
!!! AATTAAAAAGTCATTTTTTT+TGG + chr1_3:66338665-66338684 Msa0134750:intron 10.0%
!! GTTAAATTAATTAAAAAGTA+GGG - chr1_3:66335692-66335711 None:intergenic 10.0%
!! AGTTAAATTAATTAAAAAGT+AGG - chr1_3:66335693-66335712 None:intergenic 10.0%
!! TTAAATATAAACAAAATAGA+AGG - chr1_3:66336050-66336069 None:intergenic 10.0%
!!! TTAGATTTTTTGATTAAATT+TGG - chr1_3:66336082-66336101 None:intergenic 10.0%
!!! TTTATATCTTAAAAATTTTG+TGG - chr1_3:66337946-66337965 None:intergenic 10.0%
!!! ACAAAATTTTTAAGATATAA+AGG + chr1_3:66337945-66337964 Msa0134750:intron 10.0%
!!! ATAACTTTTTTTTTTTTTTG+AGG - chr1_3:66338015-66338034 None:intergenic 10.0%
!!! ATCTTTTAAATATAATTCAT+TGG + chr1_3:66338427-66338446 Msa0134750:intron 10.0%
!! AAAAAAAGATAATACTAATA+TGG + chr1_3:66338542-66338561 Msa0134750:intron 10.0%
!!! AATAAAAAAAGTCATTTTTT+TGG + chr1_3:66338624-66338643 Msa0134750:intron 10.0%
!!! AATTAAAAAGTCATTTTTTT+TGG + chr1_3:66338665-66338684 Msa0134750:intron 10.0%
!! TTAAATAATAACAGTAAATC+TGG - chr1_3:66336181-66336200 None:intergenic 15.0%
!! TGAATGTATAATTACTAAAA+TGG - chr1_3:66336402-66336421 None:intergenic 15.0%
!! ATAATGTAGAATTGATTAAA+TGG - chr1_3:66336464-66336483 None:intergenic 15.0%
!! TGAGATAATTAATTTATGTT+TGG - chr1_3:66336492-66336511 None:intergenic 15.0%
!!! ACACACTTAATTAATTTTTT+GGG + chr1_3:66336587-66336606 Msa0134750:intron 15.0%
!!! GGTAATTTTTTAATTTCTAA+TGG + chr1_3:66336919-66336938 Msa0134750:intron 15.0%
!! AGAAATAAATTCAGAAATAT+TGG + chr1_3:66337464-66337483 Msa0134750:intron 15.0%
!! TATATATGAATGATTATGAA+TGG - chr1_3:66338142-66338161 None:intergenic 15.0%
!!! TTTTTATCTTATTTGATGTT+AGG - chr1_3:66338263-66338282 None:intergenic 15.0%
!!! ATACAGATAGATTTTATAAT+TGG + chr1_3:66338574-66338593 Msa0134750:intron 15.0%
!! AAACGAAATACTAAAAAAAT+AGG + chr1_3:66339093-66339112 Msa0134750:intron 15.0%
!! ACTAAAATATAAGCAAAAAA+AGG - chr1_3:66340119-66340138 None:intergenic 15.0%
!! TATTAAAATTTCAAACACTT+CGG - chr1_3:66340883-66340902 None:intergenic 15.0%
!!! GTTTTTTTTTTTTTTCCAAT+AGG - chr1_3:66341245-66341264 None:intergenic 15.0%
!! AAGATAAAAATACAAGAATA+TGG - chr1_3:66342342-66342361 None:intergenic 15.0%
!! TTAAATAATAACAGTAAATC+TGG - chr1_3:66336181-66336200 None:intergenic 15.0%
!! TGAATGTATAATTACTAAAA+TGG - chr1_3:66336402-66336421 None:intergenic 15.0%
!! ATAATGTAGAATTGATTAAA+TGG - chr1_3:66336464-66336483 None:intergenic 15.0%
!! TGAGATAATTAATTTATGTT+TGG - chr1_3:66336492-66336511 None:intergenic 15.0%
!!! ACACACTTAATTAATTTTTT+GGG + chr1_3:66336587-66336606 Msa0134750:intron 15.0%
!!! GGTAATTTTTTAATTTCTAA+TGG + chr1_3:66336919-66336938 Msa0134750:intron 15.0%
!! AGAAATAAATTCAGAAATAT+TGG + chr1_3:66337464-66337483 Msa0134750:intron 15.0%
!! TATATATGAATGATTATGAA+TGG - chr1_3:66338142-66338161 None:intergenic 15.0%
!!! TTTTTATCTTATTTGATGTT+AGG - chr1_3:66338263-66338282 None:intergenic 15.0%
!!! ATACAGATAGATTTTATAAT+TGG + chr1_3:66338574-66338593 Msa0134750:intron 15.0%
!! AAACGAAATACTAAAAAAAT+AGG + chr1_3:66339093-66339112 Msa0134750:intron 15.0%
!! ACTAAAATATAAGCAAAAAA+AGG - chr1_3:66340119-66340138 None:intergenic 15.0%
!! TATTAAAATTTCAAACACTT+CGG - chr1_3:66340883-66340902 None:intergenic 15.0%
!!! GTTTTTTTTTTTTTTCCAAT+AGG - chr1_3:66341245-66341264 None:intergenic 15.0%
!! AAGATAAAAATACAAGAATA+TGG - chr1_3:66342342-66342361 None:intergenic 15.0%
!! TCTAATTATATTATTGCTTC+TGG - chr1_3:66335796-66335815 None:intergenic 20.0%
!!! AATATTTTATGGGTCTAATT+TGG - chr1_3:66336109-66336128 None:intergenic 20.0%
!! TTAGACCCATAAAATATTTA+TGG + chr1_3:66336111-66336130 Msa0134750:intron 20.0%
!!! CATGACCATAAATATTTTAT+GGG - chr1_3:66336119-66336138 None:intergenic 20.0%
!!! TCATGACCATAAATATTTTA+TGG - chr1_3:66336120-66336139 None:intergenic 20.0%
!! AAATTAATTAAGTGTGTGTT+TGG - chr1_3:66336584-66336603 None:intergenic 20.0%
!!! CACACACTTAATTAATTTTT+TGG + chr1_3:66336586-66336605 Msa0134750:intron 20.0%
!!! TCACAAAAGTTATTGATTTT+TGG - chr1_3:66336987-66337006 None:intergenic 20.0%
!!! TCTACTTTTTCTTTGAAAAT+TGG - chr1_3:66337016-66337035 None:intergenic 20.0%
!! AACATAATTCATTATCAACA+AGG + chr1_3:66337601-66337620 Msa0134750:intron 20.0%
!! AATAAATATTTACGAACAGA+AGG - chr1_3:66337657-66337676 None:intergenic 20.0%
!! TCTTCCTAAAAGTAAAATAA+AGG + chr1_3:66337745-66337764 Msa0134750:intron 20.0%
!!! GTATCCTTTATTTTACTTTT+AGG - chr1_3:66337752-66337771 None:intergenic 20.0%
!!! ATATGGAACAACTTTTTATT+TGG + chr1_3:66337919-66337938 Msa0134750:intron 20.0%
!!! GAATGGAATTTTTTTTTTGA+GGG - chr1_3:66338125-66338144 None:intergenic 20.0%
!!! TGAATGGAATTTTTTTTTTG+AGG - chr1_3:66338126-66338145 None:intergenic 20.0%
!! TATTTAAAAGATGTTGAGAT+TGG - chr1_3:66338419-66338438 None:intergenic 20.0%
!!! ACAATAAAAGTATAGACTTT+TGG - chr1_3:66338727-66338746 None:intergenic 20.0%
!!! TCTATATGTAGTTTGTTTTA+CGG + chr1_3:66338808-66338827 Msa0134750:intron 20.0%
!!! AGTCACTTTTTTTTTTTTGA+AGG - chr1_3:66338883-66338902 None:intergenic 20.0%
!! TAAAAATCTCATAAGGAATA+AGG - chr1_3:66339761-66339780 None:intergenic 20.0%
!! TTAACCTTCCTTTAATAAAA+TGG + chr1_3:66339858-66339877 Msa0134750:intron 20.0%
!!! CAATGATTCCATTTTATTAA+AGG - chr1_3:66339869-66339888 None:intergenic 20.0%
!! AATGTTTCATGTAAAATTCA+AGG - chr1_3:66340193-66340212 None:intergenic 20.0%
!!! AATAGAATTACAATTTGCTT+AGG - chr1_3:66341293-66341312 None:intergenic 20.0%
!! TTGAGAATAATATCATGAAA+AGG + chr1_3:66341941-66341960 Msa0134750:CDS 20.0%
!! TAAAAATACAAGAATATGGT+AGG - chr1_3:66342338-66342357 None:intergenic 20.0%
!! TCTAATTATATTATTGCTTC+TGG - chr1_3:66335796-66335815 None:intergenic 20.0%
!!! AATATTTTATGGGTCTAATT+TGG - chr1_3:66336109-66336128 None:intergenic 20.0%
!! TTAGACCCATAAAATATTTA+TGG + chr1_3:66336111-66336130 Msa0134750:intron 20.0%
!!! CATGACCATAAATATTTTAT+GGG - chr1_3:66336119-66336138 None:intergenic 20.0%
!!! TCATGACCATAAATATTTTA+TGG - chr1_3:66336120-66336139 None:intergenic 20.0%
!! AAATTAATTAAGTGTGTGTT+TGG - chr1_3:66336584-66336603 None:intergenic 20.0%
!!! CACACACTTAATTAATTTTT+TGG + chr1_3:66336586-66336605 Msa0134750:intron 20.0%
!!! TCACAAAAGTTATTGATTTT+TGG - chr1_3:66336987-66337006 None:intergenic 20.0%
!!! TCTACTTTTTCTTTGAAAAT+TGG - chr1_3:66337016-66337035 None:intergenic 20.0%
!! AACATAATTCATTATCAACA+AGG + chr1_3:66337601-66337620 Msa0134750:intron 20.0%
!! AATAAATATTTACGAACAGA+AGG - chr1_3:66337657-66337676 None:intergenic 20.0%
!! TCTTCCTAAAAGTAAAATAA+AGG + chr1_3:66337745-66337764 Msa0134750:intron 20.0%
!!! GTATCCTTTATTTTACTTTT+AGG - chr1_3:66337752-66337771 None:intergenic 20.0%
!!! ATATGGAACAACTTTTTATT+TGG + chr1_3:66337919-66337938 Msa0134750:intron 20.0%
!!! GAATGGAATTTTTTTTTTGA+GGG - chr1_3:66338125-66338144 None:intergenic 20.0%
!!! TGAATGGAATTTTTTTTTTG+AGG - chr1_3:66338126-66338145 None:intergenic 20.0%
!! TATTTAAAAGATGTTGAGAT+TGG - chr1_3:66338419-66338438 None:intergenic 20.0%
!!! ACAATAAAAGTATAGACTTT+TGG - chr1_3:66338727-66338746 None:intergenic 20.0%
!!! TCTATATGTAGTTTGTTTTA+CGG + chr1_3:66338808-66338827 Msa0134750:intron 20.0%
!!! AGTCACTTTTTTTTTTTTGA+AGG - chr1_3:66338883-66338902 None:intergenic 20.0%
!! TAAAAATCTCATAAGGAATA+AGG - chr1_3:66339761-66339780 None:intergenic 20.0%
!! TTAACCTTCCTTTAATAAAA+TGG + chr1_3:66339858-66339877 Msa0134750:intron 20.0%
!!! CAATGATTCCATTTTATTAA+AGG - chr1_3:66339869-66339888 None:intergenic 20.0%
!! AATGTTTCATGTAAAATTCA+AGG - chr1_3:66340193-66340212 None:intergenic 20.0%
!!! AATAGAATTACAATTTGCTT+AGG - chr1_3:66341293-66341312 None:intergenic 20.0%
!! TTGAGAATAATATCATGAAA+AGG + chr1_3:66341941-66341960 Msa0134750:CDS 20.0%
!! TAAAAATACAAGAATATGGT+AGG - chr1_3:66342338-66342357 None:intergenic 20.0%
! CTAATAGCAATTGGAAAATT+TGG - chr1_3:66335003-66335022 None:intergenic 25.0%
! TCTATCAAGAAAAGAGATAT+TGG - chr1_3:66335051-66335070 None:intergenic 25.0%
! TGGAGATGAATTACAAAAAA+AGG + chr1_3:66335216-66335235 Msa0134750:CDS 25.0%
! GGAGATGAATTACAAAAAAA+GGG + chr1_3:66335217-66335236 Msa0134750:CDS 25.0%
! AATTACAAAAAAAGGGTTAG+AGG + chr1_3:66335224-66335243 Msa0134750:CDS 25.0%
! ATTACAAAAAAAGGGTTAGA+GGG + chr1_3:66335225-66335244 Msa0134750:CDS 25.0%
! TTTAATGAAGAAAAGCTTGT+TGG + chr1_3:66335256-66335275 Msa0134750:CDS 25.0%
! TATATAGTAGTACAAGCTTA+TGG - chr1_3:66335409-66335428 None:intergenic 25.0%
! TGTGTAATAAAGATCTGATT+CGG + chr1_3:66335611-66335630 Msa0134750:intron 25.0%
! TTCTGTTGTACTAATATTAG+TGG + chr1_3:66335658-66335677 Msa0134750:intron 25.0%
! TAATATAATTAGAGCCTGTT+TGG + chr1_3:66335803-66335822 Msa0134750:intron 25.0%
! AGGACAATAAAGGAAAATAA+TGG - chr1_3:66336021-66336040 None:intergenic 25.0%
! AACAAAATAGAAGGAGATAA+AGG - chr1_3:66336041-66336060 None:intergenic 25.0%
! GTAAAGAAAAATCCAAAACT+TGG - chr1_3:66336147-66336166 None:intergenic 25.0%
! ATAATAACAGTAAATCTGGA+CGG - chr1_3:66336177-66336196 None:intergenic 25.0%
! CATAGCTAAATACAAATAAC+TGG - chr1_3:66336378-66336397 None:intergenic 25.0%
! GTAGAATTGATTAAATGGAA+TGG - chr1_3:66336459-66336478 None:intergenic 25.0%
! AATTCTCAGTTACATTTGAT+TGG + chr1_3:66336714-66336733 Msa0134750:CDS 25.0%
! ATTCTCAGTTACATTTGATT+GGG + chr1_3:66336715-66336734 Msa0134750:CDS 25.0%
! TGTATAGAAAAGATGGTATA+TGG + chr1_3:66337243-66337262 Msa0134750:intron 25.0%
! CATTCAAGAATTAAGATGTA+TGG + chr1_3:66337401-66337420 Msa0134750:intron 25.0%
! AATTCAGAAATATTGGTCAT+TGG + chr1_3:66337471-66337490 Msa0134750:intron 25.0%
! AAATAAGTTTCTTGTGTTCA+AGG - chr1_3:66337725-66337744 None:intergenic 25.0%
!!! CAAAGTTTTTTTTTCTTGTG+TGG - chr1_3:66337804-66337823 None:intergenic 25.0%
! GTAAACATAATAGATAGAGA+GGG - chr1_3:66338039-66338058 None:intergenic 25.0%
!!! TTTTTTTTTGAGGGAATGAA+TGG - chr1_3:66338116-66338135 None:intergenic 25.0%
!! TTATCTTATTTGATGTTAGG+CGG - chr1_3:66338260-66338279 None:intergenic 25.0%
! AAGTTAACCTTATTATCAGT+TGG + chr1_3:66338496-66338515 Msa0134750:intron 25.0%
! AAATCAACCAACTGATAATA+AGG - chr1_3:66338506-66338525 None:intergenic 25.0%
! AAAAAGTGACTGAGTTTAAA+TGG + chr1_3:66338892-66338911 Msa0134750:intron 25.0%
! GTCTAATCAATAATTGTTCT+AGG - chr1_3:66338962-66338981 None:intergenic 25.0%
! GAACATAAATGTTTAGATTC+AGG - chr1_3:66339536-66339555 None:intergenic 25.0%
! CATAAATATCAAGTACATCT+TGG - chr1_3:66339689-66339708 None:intergenic 25.0%
! GATGTACTTGATATTTATGA+AGG + chr1_3:66339690-66339709 Msa0134750:CDS 25.0%
!! TCTCTAATTTTACTATGCAA+AGG - chr1_3:66339738-66339757 None:intergenic 25.0%
!! AGTTCTCTAAAAATCTCATA+AGG - chr1_3:66339768-66339787 None:intergenic 25.0%
!!! AGATTTTTAGAGAACTTGTT+AGG + chr1_3:66339772-66339791 Msa0134750:CDS 25.0%
!! GATTCCATTTTATTAAAGGA+AGG - chr1_3:66339865-66339884 None:intergenic 25.0%
! TAAACTTTCTTACTTGTAGA+CGG - chr1_3:66340015-66340034 None:intergenic 25.0%
! ATATGTACTTCGTCTAAATT+CGG - chr1_3:66340095-66340114 None:intergenic 25.0%
! CACATAGAAAATAGTTTAGA+CGG + chr1_3:66340379-66340398 Msa0134750:CDS 25.0%
! ACATAGAAAATAGTTTAGAC+GGG + chr1_3:66340380-66340399 Msa0134750:CDS 25.0%
!! TTTTGTGAATAACATACCAA+TGG - chr1_3:66340842-66340861 None:intergenic 25.0%
! CTGTTTGTAGCTATTATAAA+TGG - chr1_3:66340950-66340969 None:intergenic 25.0%
! TAAATTTGCATTGGAAATGT+CGG + chr1_3:66341102-66341121 Msa0134750:CDS 25.0%
! GGCTGTTGTATATAAAAATT+GGG + chr1_3:66341123-66341142 Msa0134750:CDS 25.0%
!! TACAATTTGCTTAGGTAAAT+TGG - chr1_3:66341285-66341304 None:intergenic 25.0%
!! ATTTCATTTGAAACTTTCAG+AGG + chr1_3:66341310-66341329 Msa0134750:intron 25.0%
! AATCATGCACCATTATTATA+TGG + chr1_3:66341596-66341615 Msa0134750:CDS 25.0%
! ATCATGCACCATTATTATAT+GGG + chr1_3:66341597-66341616 Msa0134750:CDS 25.0%
!!! GTTTTTAAGAATGCTAATTC+AGG - chr1_3:66341757-66341776 None:intergenic 25.0%
! GTCTTCAAATTATCATATGT+TGG + chr1_3:66342411-66342430 Msa0134750:three_prime_UTR 25.0%
! AAAATCCTTAGAATATGCAA+AGG + chr1_3:66342539-66342558 Msa0134750:three_prime_UTR 25.0%
!! AATGTCTAATTTGCAAGAAA+TGG - chr1_3:66342599-66342618 None:intergenic 25.0%
! CTAATAGCAATTGGAAAATT+TGG - chr1_3:66335003-66335022 None:intergenic 25.0%
! TCTATCAAGAAAAGAGATAT+TGG - chr1_3:66335051-66335070 None:intergenic 25.0%
! TGGAGATGAATTACAAAAAA+AGG + chr1_3:66335216-66335235 Msa0134750:CDS 25.0%
! GGAGATGAATTACAAAAAAA+GGG + chr1_3:66335217-66335236 Msa0134750:CDS 25.0%
! AATTACAAAAAAAGGGTTAG+AGG + chr1_3:66335224-66335243 Msa0134750:CDS 25.0%
! ATTACAAAAAAAGGGTTAGA+GGG + chr1_3:66335225-66335244 Msa0134750:CDS 25.0%
! TTTAATGAAGAAAAGCTTGT+TGG + chr1_3:66335256-66335275 Msa0134750:CDS 25.0%
! TATATAGTAGTACAAGCTTA+TGG - chr1_3:66335409-66335428 None:intergenic 25.0%
! TGTGTAATAAAGATCTGATT+CGG + chr1_3:66335611-66335630 Msa0134750:intron 25.0%
! TTCTGTTGTACTAATATTAG+TGG + chr1_3:66335658-66335677 Msa0134750:intron 25.0%
! TAATATAATTAGAGCCTGTT+TGG + chr1_3:66335803-66335822 Msa0134750:intron 25.0%
! AGGACAATAAAGGAAAATAA+TGG - chr1_3:66336021-66336040 None:intergenic 25.0%
! AACAAAATAGAAGGAGATAA+AGG - chr1_3:66336041-66336060 None:intergenic 25.0%
! GTAAAGAAAAATCCAAAACT+TGG - chr1_3:66336147-66336166 None:intergenic 25.0%
! ATAATAACAGTAAATCTGGA+CGG - chr1_3:66336177-66336196 None:intergenic 25.0%
! CATAGCTAAATACAAATAAC+TGG - chr1_3:66336378-66336397 None:intergenic 25.0%
! GTAGAATTGATTAAATGGAA+TGG - chr1_3:66336459-66336478 None:intergenic 25.0%
! AATTCTCAGTTACATTTGAT+TGG + chr1_3:66336714-66336733 Msa0134750:CDS 25.0%
! ATTCTCAGTTACATTTGATT+GGG + chr1_3:66336715-66336734 Msa0134750:CDS 25.0%
! TGTATAGAAAAGATGGTATA+TGG + chr1_3:66337243-66337262 Msa0134750:intron 25.0%
! CATTCAAGAATTAAGATGTA+TGG + chr1_3:66337401-66337420 Msa0134750:intron 25.0%
! AATTCAGAAATATTGGTCAT+TGG + chr1_3:66337471-66337490 Msa0134750:intron 25.0%
! AAATAAGTTTCTTGTGTTCA+AGG - chr1_3:66337725-66337744 None:intergenic 25.0%
!!! CAAAGTTTTTTTTTCTTGTG+TGG - chr1_3:66337804-66337823 None:intergenic 25.0%
! GTAAACATAATAGATAGAGA+GGG - chr1_3:66338039-66338058 None:intergenic 25.0%
!!! TTTTTTTTTGAGGGAATGAA+TGG - chr1_3:66338116-66338135 None:intergenic 25.0%
!! TTATCTTATTTGATGTTAGG+CGG - chr1_3:66338260-66338279 None:intergenic 25.0%
! AAGTTAACCTTATTATCAGT+TGG + chr1_3:66338496-66338515 Msa0134750:intron 25.0%
! AAATCAACCAACTGATAATA+AGG - chr1_3:66338506-66338525 None:intergenic 25.0%
! AAAAAGTGACTGAGTTTAAA+TGG + chr1_3:66338892-66338911 Msa0134750:intron 25.0%
! GTCTAATCAATAATTGTTCT+AGG - chr1_3:66338962-66338981 None:intergenic 25.0%
! GAACATAAATGTTTAGATTC+AGG - chr1_3:66339536-66339555 None:intergenic 25.0%
! CATAAATATCAAGTACATCT+TGG - chr1_3:66339689-66339708 None:intergenic 25.0%
! GATGTACTTGATATTTATGA+AGG + chr1_3:66339690-66339709 Msa0134750:CDS 25.0%
!! TCTCTAATTTTACTATGCAA+AGG - chr1_3:66339738-66339757 None:intergenic 25.0%
!! AGTTCTCTAAAAATCTCATA+AGG - chr1_3:66339768-66339787 None:intergenic 25.0%
!!! AGATTTTTAGAGAACTTGTT+AGG + chr1_3:66339772-66339791 Msa0134750:CDS 25.0%
!! GATTCCATTTTATTAAAGGA+AGG - chr1_3:66339865-66339884 None:intergenic 25.0%
! TAAACTTTCTTACTTGTAGA+CGG - chr1_3:66340015-66340034 None:intergenic 25.0%
! ATATGTACTTCGTCTAAATT+CGG - chr1_3:66340095-66340114 None:intergenic 25.0%
! CACATAGAAAATAGTTTAGA+CGG + chr1_3:66340379-66340398 Msa0134750:CDS 25.0%
! ACATAGAAAATAGTTTAGAC+GGG + chr1_3:66340380-66340399 Msa0134750:CDS 25.0%
!! TTTTGTGAATAACATACCAA+TGG - chr1_3:66340842-66340861 None:intergenic 25.0%
! CTGTTTGTAGCTATTATAAA+TGG - chr1_3:66340950-66340969 None:intergenic 25.0%
! TAAATTTGCATTGGAAATGT+CGG + chr1_3:66341102-66341121 Msa0134750:CDS 25.0%
! GGCTGTTGTATATAAAAATT+GGG + chr1_3:66341123-66341142 Msa0134750:CDS 25.0%
!! TACAATTTGCTTAGGTAAAT+TGG - chr1_3:66341285-66341304 None:intergenic 25.0%
!! ATTTCATTTGAAACTTTCAG+AGG + chr1_3:66341310-66341329 Msa0134750:intron 25.0%
! AATCATGCACCATTATTATA+TGG + chr1_3:66341596-66341615 Msa0134750:CDS 25.0%
! ATCATGCACCATTATTATAT+GGG + chr1_3:66341597-66341616 Msa0134750:CDS 25.0%
!!! GTTTTTAAGAATGCTAATTC+AGG - chr1_3:66341757-66341776 None:intergenic 25.0%
! GTCTTCAAATTATCATATGT+TGG + chr1_3:66342411-66342430 Msa0134750:three_prime_UTR 25.0%
! AAAATCCTTAGAATATGCAA+AGG + chr1_3:66342539-66342558 Msa0134750:three_prime_UTR 25.0%
!! AATGTCTAATTTGCAAGAAA+TGG - chr1_3:66342599-66342618 None:intergenic 25.0%
GCAGAGTTCAATTCTAAATA+AGG + chr1_3:66334972-66334991 Msa0134750:five_prime_UTR 30.0%
TACGTACTACTAATAGCAAT+TGG - chr1_3:66335012-66335031 None:intergenic 30.0%
AAGTAAGAATCAGACATTAG+AGG - chr1_3:66335080-66335099 None:intergenic 30.0%
ACAAGTGTATCAGTACAAAT+AGG - chr1_3:66335148-66335167 None:intergenic 30.0%
!!! CTTGTTTTGAAGTAGTGTTT+AGG + chr1_3:66335163-66335182 Msa0134750:intron 30.0%
TTGAAGTAGTGTTTAGGTAT+TGG + chr1_3:66335169-66335188 Msa0134750:intron 30.0%
! TGATCGAATTGATGAGTTTT+TGG + chr1_3:66335307-66335326 Msa0134750:CDS 30.0%
! GATCGAATTGATGAGTTTTT+GGG + chr1_3:66335308-66335327 Msa0134750:CDS 30.0%
AAGTCAAGTCAACTACATTA+TGG + chr1_3:66335569-66335588 Msa0134750:intron 30.0%
TTCTTGTAAACTCAAAAGCT+AGG - chr1_3:66335960-66335979 None:intergenic 30.0%
AAGGAGATAAAGGACAATAA+AGG - chr1_3:66336031-66336050 None:intergenic 30.0%
TAAATGGAATGGATGTTGTT+TGG - chr1_3:66336448-66336467 None:intergenic 30.0%
! GGTGTGTTATTATTAGCAAA+GGG + chr1_3:66336608-66336627 Msa0134750:intron 30.0%
! GTGTGTTATTATTAGCAAAG+GGG + chr1_3:66336609-66336628 Msa0134750:intron 30.0%
TTACTGTCTTGAGGTAAAAT+TGG - chr1_3:66336796-66336815 None:intergenic 30.0%
!! TAACTTTTGTTTGCAACTCT+TGG + chr1_3:66336846-66336865 Msa0134750:CDS 30.0%
!! AACTTTTGTTTGCAACTCTT+GGG + chr1_3:66336847-66336866 Msa0134750:CDS 30.0%
AGAAAAAGTAGATAGTGACA+CGG + chr1_3:66337024-66337043 Msa0134750:intron 30.0%
TCACATAAGTTGTCACAAAA+TGG + chr1_3:66337106-66337125 Msa0134750:intron 30.0%
TTGGGTTTATTTAATCCACA+TGG + chr1_3:66337218-66337237 Msa0134750:intron 30.0%
! TCTTTTCTATACATTCCATG+TGG - chr1_3:66337236-66337255 None:intergenic 30.0%
CATGGAATGTATAGAAAAGA+TGG + chr1_3:66337236-66337255 Msa0134750:intron 30.0%
!! AACTGTCAAGTTGAATTCAA+TGG + chr1_3:66337357-66337376 Msa0134750:intron 30.0%
TCAAGAATTAAGATGTATGG+TGG + chr1_3:66337404-66337423 Msa0134750:intron 30.0%
CAAGAATTAAGATGTATGGT+GGG + chr1_3:66337405-66337424 Msa0134750:intron 30.0%
!!! GTTGCGCTTGTTTTTTTTTT+TGG + chr1_3:66337493-66337512 Msa0134750:intron 30.0%
!! TTTCGTTCGTTTCTGAAATA+TGG + chr1_3:66337902-66337921 Msa0134750:intron 30.0%
CGTAAACATAATAGATAGAG+AGG - chr1_3:66338040-66338059 None:intergenic 30.0%
!!! CAGCAATTTCTTTTTTGAAG+AGG + chr1_3:66338289-66338308 Msa0134750:intron 30.0%
ACACTTATCATATCGCAATA+TGG - chr1_3:66339047-66339066 None:intergenic 30.0%
TCAATGTTTCTTCTACATGT+AGG + chr1_3:66340288-66340307 Msa0134750:intron 30.0%
! TATTTTCTATGTGCTTTGCT+TGG - chr1_3:66340372-66340391 None:intergenic 30.0%
ATCAAACTTCTTTATGTTGC+AGG + chr1_3:66340518-66340537 Msa0134750:intron 30.0%
GAGTTTATTCTACTTAGGTA+TGG - chr1_3:66340594-66340613 None:intergenic 30.0%
TGGTAGAGTTTATTCTACTT+AGG - chr1_3:66340599-66340618 None:intergenic 30.0%
AAGCTTAATTCAATAGCAAG+TGG - chr1_3:66340681-66340700 None:intergenic 30.0%
TTTCCAATGCAAATTTACCA+GGG - chr1_3:66341099-66341118 None:intergenic 30.0%
ATTTCCAATGCAAATTTACC+AGG - chr1_3:66341100-66341119 None:intergenic 30.0%
CGGCTGTTGTATATAAAAAT+TGG + chr1_3:66341122-66341141 Msa0134750:CDS 30.0%
!! TGTTGATGGATTGGAAATAT+GGG + chr1_3:66341399-66341418 Msa0134750:CDS 30.0%
! TCAATTCTAGTCTTCATTTG+TGG - chr1_3:66341568-66341587 None:intergenic 30.0%
CATTTCTGTTCTTCAAACTT+GGG - chr1_3:66341975-66341994 None:intergenic 30.0%
CAAGTTTGAAGAACAGAAAT+GGG + chr1_3:66341974-66341993 Msa0134750:CDS 30.0%
TAGCAAGAATTCAAAGAGAA+TGG - chr1_3:66342104-66342123 None:intergenic 30.0%
AATGAGCTTGGACTATTTAA+AGG - chr1_3:66342445-66342464 None:intergenic 30.0%
ATTCGTAATACTTTCTGAAC+TGG + chr1_3:66342462-66342481 Msa0134750:three_prime_UTR 30.0%
TATTGCCTTTGCATATTCTA+AGG - chr1_3:66342547-66342566 None:intergenic 30.0%
GCAGAGTTCAATTCTAAATA+AGG + chr1_3:66334972-66334991 Msa0134750:five_prime_UTR 30.0%
TACGTACTACTAATAGCAAT+TGG - chr1_3:66335012-66335031 None:intergenic 30.0%
AAGTAAGAATCAGACATTAG+AGG - chr1_3:66335080-66335099 None:intergenic 30.0%
ACAAGTGTATCAGTACAAAT+AGG - chr1_3:66335148-66335167 None:intergenic 30.0%
!!! CTTGTTTTGAAGTAGTGTTT+AGG + chr1_3:66335163-66335182 Msa0134750:intron 30.0%
TTGAAGTAGTGTTTAGGTAT+TGG + chr1_3:66335169-66335188 Msa0134750:intron 30.0%
! TGATCGAATTGATGAGTTTT+TGG + chr1_3:66335307-66335326 Msa0134750:CDS 30.0%
! GATCGAATTGATGAGTTTTT+GGG + chr1_3:66335308-66335327 Msa0134750:CDS 30.0%
AAGTCAAGTCAACTACATTA+TGG + chr1_3:66335569-66335588 Msa0134750:intron 30.0%
TTCTTGTAAACTCAAAAGCT+AGG - chr1_3:66335960-66335979 None:intergenic 30.0%
AAGGAGATAAAGGACAATAA+AGG - chr1_3:66336031-66336050 None:intergenic 30.0%
TAAATGGAATGGATGTTGTT+TGG - chr1_3:66336448-66336467 None:intergenic 30.0%
! GGTGTGTTATTATTAGCAAA+GGG + chr1_3:66336608-66336627 Msa0134750:intron 30.0%
! GTGTGTTATTATTAGCAAAG+GGG + chr1_3:66336609-66336628 Msa0134750:intron 30.0%
TTACTGTCTTGAGGTAAAAT+TGG - chr1_3:66336796-66336815 None:intergenic 30.0%
!! TAACTTTTGTTTGCAACTCT+TGG + chr1_3:66336846-66336865 Msa0134750:CDS 30.0%
!! AACTTTTGTTTGCAACTCTT+GGG + chr1_3:66336847-66336866 Msa0134750:CDS 30.0%
AGAAAAAGTAGATAGTGACA+CGG + chr1_3:66337024-66337043 Msa0134750:intron 30.0%
TCACATAAGTTGTCACAAAA+TGG + chr1_3:66337106-66337125 Msa0134750:intron 30.0%
TTGGGTTTATTTAATCCACA+TGG + chr1_3:66337218-66337237 Msa0134750:intron 30.0%
! TCTTTTCTATACATTCCATG+TGG - chr1_3:66337236-66337255 None:intergenic 30.0%
CATGGAATGTATAGAAAAGA+TGG + chr1_3:66337236-66337255 Msa0134750:intron 30.0%
!! AACTGTCAAGTTGAATTCAA+TGG + chr1_3:66337357-66337376 Msa0134750:intron 30.0%
TCAAGAATTAAGATGTATGG+TGG + chr1_3:66337404-66337423 Msa0134750:intron 30.0%
CAAGAATTAAGATGTATGGT+GGG + chr1_3:66337405-66337424 Msa0134750:intron 30.0%
!!! GTTGCGCTTGTTTTTTTTTT+TGG + chr1_3:66337493-66337512 Msa0134750:intron 30.0%
!! TTTCGTTCGTTTCTGAAATA+TGG + chr1_3:66337902-66337921 Msa0134750:intron 30.0%
CGTAAACATAATAGATAGAG+AGG - chr1_3:66338040-66338059 None:intergenic 30.0%
!!! CAGCAATTTCTTTTTTGAAG+AGG + chr1_3:66338289-66338308 Msa0134750:intron 30.0%
ACACTTATCATATCGCAATA+TGG - chr1_3:66339047-66339066 None:intergenic 30.0%
TCAATGTTTCTTCTACATGT+AGG + chr1_3:66340288-66340307 Msa0134750:intron 30.0%
! TATTTTCTATGTGCTTTGCT+TGG - chr1_3:66340372-66340391 None:intergenic 30.0%
ATCAAACTTCTTTATGTTGC+AGG + chr1_3:66340518-66340537 Msa0134750:intron 30.0%
GAGTTTATTCTACTTAGGTA+TGG - chr1_3:66340594-66340613 None:intergenic 30.0%
TGGTAGAGTTTATTCTACTT+AGG - chr1_3:66340599-66340618 None:intergenic 30.0%
AAGCTTAATTCAATAGCAAG+TGG - chr1_3:66340681-66340700 None:intergenic 30.0%
TTTCCAATGCAAATTTACCA+GGG - chr1_3:66341099-66341118 None:intergenic 30.0%
ATTTCCAATGCAAATTTACC+AGG - chr1_3:66341100-66341119 None:intergenic 30.0%
CGGCTGTTGTATATAAAAAT+TGG + chr1_3:66341122-66341141 Msa0134750:CDS 30.0%
!! TGTTGATGGATTGGAAATAT+GGG + chr1_3:66341399-66341418 Msa0134750:CDS 30.0%
! TCAATTCTAGTCTTCATTTG+TGG - chr1_3:66341568-66341587 None:intergenic 30.0%
CATTTCTGTTCTTCAAACTT+GGG - chr1_3:66341975-66341994 None:intergenic 30.0%
CAAGTTTGAAGAACAGAAAT+GGG + chr1_3:66341974-66341993 Msa0134750:CDS 30.0%
TAGCAAGAATTCAAAGAGAA+TGG - chr1_3:66342104-66342123 None:intergenic 30.0%
AATGAGCTTGGACTATTTAA+AGG - chr1_3:66342445-66342464 None:intergenic 30.0%
ATTCGTAATACTTTCTGAAC+TGG + chr1_3:66342462-66342481 Msa0134750:three_prime_UTR 30.0%
TATTGCCTTTGCATATTCTA+AGG - chr1_3:66342547-66342566 None:intergenic 30.0%
! TTTAGAATTGAACTCTGCAG+TGG - chr1_3:66334970-66334989 None:intergenic 35.0%
GTACGTAACAAGAAGAATCA+TGG + chr1_3:66335196-66335215 Msa0134750:exon 35.0%
!! GAACGTTTGATTTGATGTCA+TGG - chr1_3:66335286-66335305 None:intergenic 35.0%
!! AATTGATGAGTTTTTGGGCA+AGG + chr1_3:66335313-66335332 Msa0134750:CDS 35.0%
!! ATTGATGAGTTTTTGGGCAA+GGG + chr1_3:66335314-66335333 Msa0134750:CDS 35.0%
GCTTATGGTGAAATTAAGCA+AGG - chr1_3:66335394-66335413 None:intergenic 35.0%
ACAGATTTACAACTTGCAAC+AGG - chr1_3:66335540-66335559 None:intergenic 35.0%
! GGGTGTGTTATTATTAGCAA+AGG + chr1_3:66336607-66336626 Msa0134750:intron 35.0%
TTTCTGATTATGAAAGCTCC+TGG - chr1_3:66336761-66336780 None:intergenic 35.0%
TCTTGAGGTAAAATTGGCTA+TGG - chr1_3:66336790-66336809 None:intergenic 35.0%
GAGTTGCAAACAAAAGTTAC+AGG - chr1_3:66336845-66336864 None:intergenic 35.0%
! TCGTGTTTTCTTTGCAAACA+AGG + chr1_3:66336898-66336917 Msa0134750:CDS 35.0%
ACTTTCTCTCTCTATTGCTT+TGG - chr1_3:66337053-66337072 None:intergenic 35.0%
! CAAGTTGAATTCAATGGCTT+TGG + chr1_3:66337363-66337382 Msa0134750:intron 35.0%
! CTTTCTTTTTCTTCTTTGCC+TGG + chr1_3:66337519-66337538 Msa0134750:intron 35.0%
!! AGAAGCATGTTTTGTGATAC+AGG + chr1_3:66339157-66339176 Msa0134750:intron 35.0%
TTATCTTCCATGTGATACAC+CGG + chr1_3:66339181-66339200 Msa0134750:CDS 35.0%
GATTGGGAAACTTAATGAGT+GGG + chr1_3:66339256-66339275 Msa0134750:CDS 35.0%
TATGCATGCTACAATGACTT+GGG + chr1_3:66339293-66339312 Msa0134750:CDS 35.0%
! TTTTCTGATCCACCAATAAC+AGG - chr1_3:66339350-66339369 None:intergenic 35.0%
!! TTGCTATTGCTAACCTGTTT+TGG - chr1_3:66339414-66339433 None:intergenic 35.0%
GCAACACAAACATTAGAGAT+CGG + chr1_3:66339430-66339449 Msa0134750:intron 35.0%
! TGCAATCTTGACTCAGTTTT+AGG - chr1_3:66339510-66339529 None:intergenic 35.0%
!! AGAGAACTTGTTAGGAATGA+TGG + chr1_3:66339780-66339799 Msa0134750:CDS 35.0%
TATATACCTTTGATCACGTC+AGG - chr1_3:66339831-66339850 None:intergenic 35.0%
CAAGGAACATATTGAGAACA+AGG - chr1_3:66340175-66340194 None:intergenic 35.0%
TTTGGTCTCCATAAACACTT+GGG - chr1_3:66340339-66340358 None:intergenic 35.0%
! TTTTGGTCTCCATAAACACT+TGG - chr1_3:66340340-66340359 None:intergenic 35.0%
!! GCTAACTAGTTGATGATATC+CGG - chr1_3:66340820-66340839 None:intergenic 35.0%
ATCATCAACTAGTTAGCCAT+TGG + chr1_3:66340823-66340842 Msa0134750:CDS 35.0%
ATAAACTATGATTCCTGTGC+AGG + chr1_3:66340900-66340919 Msa0134750:intron 35.0%
TGCATTGTATCCTTGAAATG+TGG - chr1_3:66341013-66341032 None:intergenic 35.0%
TGCATATAAATGCCTTAGCT+AGG + chr1_3:66341029-66341048 Msa0134750:CDS 35.0%
ATACACTTATCAATGCTGGA+GGG + chr1_3:66341053-66341072 Msa0134750:CDS 35.0%
TTTCCCTGGTAAATTTGCAT+TGG + chr1_3:66341093-66341112 Msa0134750:CDS 35.0%
!! TCAGAAGTTTTAGTCCATGA+GGG - chr1_3:66341360-66341379 None:intergenic 35.0%
!! ATCAGAAGTTTTAGTCCATG+AGG - chr1_3:66341361-66341380 None:intergenic 35.0%
!! CTGTTGATGGATTGGAAATA+TGG + chr1_3:66341398-66341417 Msa0134750:CDS 35.0%
TATGGGATGCAATTGAAACT+TGG + chr1_3:66341416-66341435 Msa0134750:CDS 35.0%
ATGGGATGCAATTGAAACTT+GGG + chr1_3:66341417-66341436 Msa0134750:CDS 35.0%
ATGCACCATTATTATATGGG+TGG + chr1_3:66341600-66341619 Msa0134750:CDS 35.0%
AGAAGCCACCCATATAATAA+TGG - chr1_3:66341608-66341627 None:intergenic 35.0%
CATTGATAGAAGTTCTGTCT+AGG + chr1_3:66341812-66341831 Msa0134750:CDS 35.0%
CCATTTCTGTTCTTCAAACT+TGG - chr1_3:66341976-66341995 None:intergenic 35.0%
CCAAGTTTGAAGAACAGAAA+TGG + chr1_3:66341973-66341992 Msa0134750:CDS 35.0%
AGAGTATAAGGCAATTTCAC+TGG - chr1_3:66342000-66342019 None:intergenic 35.0%
! TTGGGAAACAGAAGAGTATA+AGG - chr1_3:66342012-66342031 None:intergenic 35.0%
!! CTAGAATAATCAGAGGTGTT+GGG - chr1_3:66342030-66342049 None:intergenic 35.0%
CAACACCTCTGATTATTCTA+GGG + chr1_3:66342029-66342048 Msa0134750:CDS 35.0%
TTTCAGATGGATATGCTGTT+GGG - chr1_3:66342081-66342100 None:intergenic 35.0%
TCAAAGAGAATGGTTTCAGA+TGG - chr1_3:66342094-66342113 None:intergenic 35.0%
TCAAACCAAAGACTTTGCTT+TGG + chr1_3:66342128-66342147 Msa0134750:three_prime_UTR 35.0%
TGAATGTACCCACATATGTT+TGG - chr1_3:66342217-66342236 None:intergenic 35.0%
!! TTCACTATGAAGTACTGACA+CGG - chr1_3:66342298-66342317 None:intergenic 35.0%
AGCTTGGACTATTTAAAGGA+AGG - chr1_3:66342441-66342460 None:intergenic 35.0%
!! GAAAGTATTACGAATGAGCT+TGG - chr1_3:66342457-66342476 None:intergenic 35.0%
ATGCAAAGGCAATACAAGAA+AGG + chr1_3:66342553-66342572 Msa0134750:three_prime_UTR 35.0%
AGAAAGGCAAAGGTGATAAA+AGG + chr1_3:66342569-66342588 Msa0134750:three_prime_UTR 35.0%
! TTTAGAATTGAACTCTGCAG+TGG - chr1_3:66334970-66334989 None:intergenic 35.0%
GTACGTAACAAGAAGAATCA+TGG + chr1_3:66335196-66335215 Msa0134750:exon 35.0%
!! GAACGTTTGATTTGATGTCA+TGG - chr1_3:66335286-66335305 None:intergenic 35.0%
!! AATTGATGAGTTTTTGGGCA+AGG + chr1_3:66335313-66335332 Msa0134750:CDS 35.0%
!! ATTGATGAGTTTTTGGGCAA+GGG + chr1_3:66335314-66335333 Msa0134750:CDS 35.0%
GCTTATGGTGAAATTAAGCA+AGG - chr1_3:66335394-66335413 None:intergenic 35.0%
ACAGATTTACAACTTGCAAC+AGG - chr1_3:66335540-66335559 None:intergenic 35.0%
! GGGTGTGTTATTATTAGCAA+AGG + chr1_3:66336607-66336626 Msa0134750:intron 35.0%
TTTCTGATTATGAAAGCTCC+TGG - chr1_3:66336761-66336780 None:intergenic 35.0%
TCTTGAGGTAAAATTGGCTA+TGG - chr1_3:66336790-66336809 None:intergenic 35.0%
GAGTTGCAAACAAAAGTTAC+AGG - chr1_3:66336845-66336864 None:intergenic 35.0%
! TCGTGTTTTCTTTGCAAACA+AGG + chr1_3:66336898-66336917 Msa0134750:CDS 35.0%
ACTTTCTCTCTCTATTGCTT+TGG - chr1_3:66337053-66337072 None:intergenic 35.0%
! CAAGTTGAATTCAATGGCTT+TGG + chr1_3:66337363-66337382 Msa0134750:intron 35.0%
! CTTTCTTTTTCTTCTTTGCC+TGG + chr1_3:66337519-66337538 Msa0134750:intron 35.0%
!! AGAAGCATGTTTTGTGATAC+AGG + chr1_3:66339157-66339176 Msa0134750:intron 35.0%
TTATCTTCCATGTGATACAC+CGG + chr1_3:66339181-66339200 Msa0134750:CDS 35.0%
GATTGGGAAACTTAATGAGT+GGG + chr1_3:66339256-66339275 Msa0134750:CDS 35.0%
TATGCATGCTACAATGACTT+GGG + chr1_3:66339293-66339312 Msa0134750:CDS 35.0%
! TTTTCTGATCCACCAATAAC+AGG - chr1_3:66339350-66339369 None:intergenic 35.0%
!! TTGCTATTGCTAACCTGTTT+TGG - chr1_3:66339414-66339433 None:intergenic 35.0%
GCAACACAAACATTAGAGAT+CGG + chr1_3:66339430-66339449 Msa0134750:intron 35.0%
! TGCAATCTTGACTCAGTTTT+AGG - chr1_3:66339510-66339529 None:intergenic 35.0%
!! AGAGAACTTGTTAGGAATGA+TGG + chr1_3:66339780-66339799 Msa0134750:CDS 35.0%
TATATACCTTTGATCACGTC+AGG - chr1_3:66339831-66339850 None:intergenic 35.0%
CAAGGAACATATTGAGAACA+AGG - chr1_3:66340175-66340194 None:intergenic 35.0%
TTTGGTCTCCATAAACACTT+GGG - chr1_3:66340339-66340358 None:intergenic 35.0%
! TTTTGGTCTCCATAAACACT+TGG - chr1_3:66340340-66340359 None:intergenic 35.0%
!! GCTAACTAGTTGATGATATC+CGG - chr1_3:66340820-66340839 None:intergenic 35.0%
ATCATCAACTAGTTAGCCAT+TGG + chr1_3:66340823-66340842 Msa0134750:CDS 35.0%
ATAAACTATGATTCCTGTGC+AGG + chr1_3:66340900-66340919 Msa0134750:intron 35.0%
TGCATTGTATCCTTGAAATG+TGG - chr1_3:66341013-66341032 None:intergenic 35.0%
TGCATATAAATGCCTTAGCT+AGG + chr1_3:66341029-66341048 Msa0134750:CDS 35.0%
ATACACTTATCAATGCTGGA+GGG + chr1_3:66341053-66341072 Msa0134750:CDS 35.0%
TTTCCCTGGTAAATTTGCAT+TGG + chr1_3:66341093-66341112 Msa0134750:CDS 35.0%
!! TCAGAAGTTTTAGTCCATGA+GGG - chr1_3:66341360-66341379 None:intergenic 35.0%
!! ATCAGAAGTTTTAGTCCATG+AGG - chr1_3:66341361-66341380 None:intergenic 35.0%
!! CTGTTGATGGATTGGAAATA+TGG + chr1_3:66341398-66341417 Msa0134750:CDS 35.0%
TATGGGATGCAATTGAAACT+TGG + chr1_3:66341416-66341435 Msa0134750:CDS 35.0%
ATGGGATGCAATTGAAACTT+GGG + chr1_3:66341417-66341436 Msa0134750:CDS 35.0%
ATGCACCATTATTATATGGG+TGG + chr1_3:66341600-66341619 Msa0134750:CDS 35.0%
AGAAGCCACCCATATAATAA+TGG - chr1_3:66341608-66341627 None:intergenic 35.0%
CATTGATAGAAGTTCTGTCT+AGG + chr1_3:66341812-66341831 Msa0134750:CDS 35.0%
CCATTTCTGTTCTTCAAACT+TGG - chr1_3:66341976-66341995 None:intergenic 35.0%
CCAAGTTTGAAGAACAGAAA+TGG + chr1_3:66341973-66341992 Msa0134750:CDS 35.0%
AGAGTATAAGGCAATTTCAC+TGG - chr1_3:66342000-66342019 None:intergenic 35.0%
! TTGGGAAACAGAAGAGTATA+AGG - chr1_3:66342012-66342031 None:intergenic 35.0%
!! CTAGAATAATCAGAGGTGTT+GGG - chr1_3:66342030-66342049 None:intergenic 35.0%
CAACACCTCTGATTATTCTA+GGG + chr1_3:66342029-66342048 Msa0134750:CDS 35.0%
TTTCAGATGGATATGCTGTT+GGG - chr1_3:66342081-66342100 None:intergenic 35.0%
TCAAAGAGAATGGTTTCAGA+TGG - chr1_3:66342094-66342113 None:intergenic 35.0%
TCAAACCAAAGACTTTGCTT+TGG + chr1_3:66342128-66342147 Msa0134750:three_prime_UTR 35.0%
TGAATGTACCCACATATGTT+TGG - chr1_3:66342217-66342236 None:intergenic 35.0%
!! TTCACTATGAAGTACTGACA+CGG - chr1_3:66342298-66342317 None:intergenic 35.0%
AGCTTGGACTATTTAAAGGA+AGG - chr1_3:66342441-66342460 None:intergenic 35.0%
!! GAAAGTATTACGAATGAGCT+TGG - chr1_3:66342457-66342476 None:intergenic 35.0%
ATGCAAAGGCAATACAAGAA+AGG + chr1_3:66342553-66342572 Msa0134750:three_prime_UTR 35.0%
AGAAAGGCAAAGGTGATAAA+AGG + chr1_3:66342569-66342588 Msa0134750:three_prime_UTR 35.0%
TGGAGGGTCATAATGTCATA+TGG - chr1_3:66334950-66334969 None:intergenic 40.0%
!! GTAGTGTTTAGGTATTGGCT+TGG + chr1_3:66335174-66335193 Msa0134750:intron 40.0%
AAAAAGGGTTAGAGGGAAAG+TGG + chr1_3:66335232-66335251 Msa0134750:CDS 40.0%
GTGAAATTAAGCAAGGAGAG+TGG - chr1_3:66335387-66335406 None:intergenic 40.0%
GAAGAGTGAAGAAGAAGCAA+AGG + chr1_3:66335484-66335503 Msa0134750:intron 40.0%
ATGCAGAAGCTAAACCAAAC+AGG - chr1_3:66335820-66335839 None:intergenic 40.0%
GCATCCTTCAAAAGCAATTC+TGG + chr1_3:66335836-66335855 Msa0134750:intron 40.0%
!! GCTACCAGAATTGCTTTTGA+AGG - chr1_3:66335843-66335862 None:intergenic 40.0%
ACTAGCAATTCCAGCATGTT+TGG + chr1_3:66335876-66335895 Msa0134750:intron 40.0%
AGAAGCTAAACCAAACATGC+TGG - chr1_3:66335889-66335908 None:intergenic 40.0%
CTCATCTCCAAAAGCAATTC+TGG + chr1_3:66335920-66335939 Msa0134750:intron 40.0%
! GCTTCAACCAGAATTGCTTT+TGG - chr1_3:66335930-66335949 None:intergenic 40.0%
! GGTCATGAGTTACCAAGTTT+TGG + chr1_3:66336132-66336151 Msa0134750:intron 40.0%
! GTGTGTGTTTGGTTCAACTT+TGG - chr1_3:66336573-66336592 None:intergenic 40.0%
TTATTAGCAAAGGGGCTGAA+AGG + chr1_3:66336617-66336636 Msa0134750:intron 40.0%
TATTAGCAAAGGGGCTGAAA+GGG + chr1_3:66336618-66336637 Msa0134750:intron 40.0%
GAAAGGGAAACATGGAAAAG+TGG + chr1_3:66336634-66336653 Msa0134750:CDS 40.0%
CATGTGTGTAACGATGAGTA+GGG - chr1_3:66336877-66336896 None:intergenic 40.0%
TCATGTGTGTAACGATGAGT+AGG - chr1_3:66336878-66336897 None:intergenic 40.0%
CTGTTGTGACAACTAAGCTT+GGG + chr1_3:66337200-66337219 Msa0134750:intron 40.0%
!! GTTGAATTCAATGGCTTTGG+AGG + chr1_3:66337366-66337385 Msa0134750:intron 40.0%
CAAAGTCATCAGGTCTGTTT+GGG - chr1_3:66338383-66338402 None:intergenic 40.0%
! AGACCTGATGACTTTGGAAA+TGG + chr1_3:66338387-66338406 Msa0134750:intron 40.0%
TGTCCATTTCCAAAGTCATC+AGG - chr1_3:66338393-66338412 None:intergenic 40.0%
GGATTGGGAAACTTAATGAG+TGG + chr1_3:66339255-66339274 Msa0134750:CDS 40.0%
CTATGCATGCTACAATGACT+TGG + chr1_3:66339292-66339311 Msa0134750:CDS 40.0%
ATAACAGGACGTGCATAATC+TGG - chr1_3:66339335-66339354 None:intergenic 40.0%
GATTATGCACGTCCTGTTAT+TGG + chr1_3:66339335-66339354 Msa0134750:CDS 40.0%
!!! TGCTAACCTGTTTTGGTATG+TGG - chr1_3:66339407-66339426 None:intergenic 40.0%
GTTCCAAGAGATGAACAGTT+TGG + chr1_3:66339552-66339571 Msa0134750:CDS 40.0%
TGACCAAACTGTTCATCTCT+TGG - chr1_3:66339558-66339577 None:intergenic 40.0%
TACTATGCAAAGGTCCACTT+GGG - chr1_3:66339728-66339747 None:intergenic 40.0%
TTACTATGCAAAGGTCCACT+TGG - chr1_3:66339729-66339748 None:intergenic 40.0%
TTTGGAAGAGAAATGCTTGC+TGG + chr1_3:66339968-66339987 Msa0134750:CDS 40.0%
TTGGAAGAGAAATGCTTGCT+GGG + chr1_3:66339969-66339988 Msa0134750:CDS 40.0%
! TTGCTTGGATGGAACTGTTT+TGG - chr1_3:66340357-66340376 None:intergenic 40.0%
TTCTATGTGCTTTGCTTGGA+TGG - chr1_3:66340368-66340387 None:intergenic 40.0%
TGTTCTAGTGGCATAAGTCT+TGG - chr1_3:66340625-66340644 None:intergenic 40.0%
!! TAGAAACAGGAGTGTTCTAG+TGG - chr1_3:66340637-66340656 None:intergenic 40.0%
!! CTCCTGTTTCTACAAGATGA+TGG + chr1_3:66340645-66340664 Msa0134750:CDS 40.0%
TGCCATCATCTTGTAGAAAC+AGG - chr1_3:66340650-66340669 None:intergenic 40.0%
TTAAGCTTACCTCATCCACA+AGG + chr1_3:66340693-66340712 Msa0134750:CDS 40.0%
! GTTTTCACTCCATCACATGA+AGG + chr1_3:66340741-66340760 Msa0134750:CDS 40.0%
TATGCTGCTGTCAATGATTC+CGG + chr1_3:66340798-66340817 Msa0134750:CDS 40.0%
CATGAGTAAATAACCTGCAC+AGG - chr1_3:66340916-66340935 None:intergenic 40.0%
GGCTTCAAGAGCTTATGAAT+TGG - chr1_3:66340992-66341011 None:intergenic 40.0%
GATAAGTGTATGCCTAGCTA+AGG - chr1_3:66341044-66341063 None:intergenic 40.0%
AGGCATACACTTATCAATGC+TGG + chr1_3:66341049-66341068 Msa0134750:CDS 40.0%
CATACACTTATCAATGCTGG+AGG + chr1_3:66341052-66341071 Msa0134750:CDS 40.0%
TACACTTATCAATGCTGGAG+GGG + chr1_3:66341054-66341073 Msa0134750:CDS 40.0%
! CTAGAGAAAACAGTTTTCCC+TGG + chr1_3:66341079-66341098 Msa0134750:CDS 40.0%
TATGCGCACTGTTAGAAGTT+CGG - chr1_3:66341202-66341221 None:intergenic 40.0%
CCAATCCATCAACAGCAAAA+GGG - chr1_3:66341393-66341412 None:intergenic 40.0%
TCCAATCCATCAACAGCAAA+AGG - chr1_3:66341394-66341413 None:intergenic 40.0%
ATGACTATGAACTCCAACTC+TGG + chr1_3:66341488-66341507 Msa0134750:CDS 40.0%
ACTTAAAGGATAGGTCATGG+TGG + chr1_3:66341542-66341561 Msa0134750:CDS 40.0%
TTTCATGCAGCTGTGAACTT+TGG + chr1_3:66341631-66341650 Msa0134750:CDS 40.0%
TTTGGACAATACCCTTATGC+AGG + chr1_3:66341649-66341668 Msa0134750:CDS 40.0%
ATAAACCTACGACTAACCGT+TGG - chr1_3:66341691-66341710 None:intergenic 40.0%
ATGACACACCAAGAAGAGTT+TGG - chr1_3:66341795-66341814 None:intergenic 40.0%
TCGACTGAAGAGGTTTATCT+TGG + chr1_3:66341838-66341857 Msa0134750:CDS 40.0%
! CCTAGAATAATCAGAGGTGT+TGG - chr1_3:66342031-66342050 None:intergenic 40.0%
CCAACACCTCTGATTATTCT+AGG + chr1_3:66342028-66342047 Msa0134750:CDS 40.0%
! ACCTCTGATTATTCTAGGGA+GGG + chr1_3:66342033-66342052 Msa0134750:CDS 40.0%
GTTTCAGATGGATATGCTGT+TGG - chr1_3:66342082-66342101 None:intergenic 40.0%
TGACACCAAAGCAAAGTCTT+TGG - chr1_3:66342136-66342155 None:intergenic 40.0%
TCACCGACACTTTAGATTGA+AGG + chr1_3:66342169-66342188 Msa0134750:three_prime_UTR 40.0%
! ACGCCTTCAATCTAAAGTGT+CGG - chr1_3:66342175-66342194 None:intergenic 40.0%
! CTTTAGATTGAAGGCGTGTT+TGG + chr1_3:66342178-66342197 Msa0134750:three_prime_UTR 40.0%
! CACATATGTTTGGTTCGTGA+CGG - chr1_3:66342207-66342226 None:intergenic 40.0%
GTCACGAACCAAACATATGT+GGG + chr1_3:66342206-66342225 Msa0134750:three_prime_UTR 40.0%
ACACTAGACATGACACTTAC+AGG - chr1_3:66342275-66342294 None:intergenic 40.0%
TCATTCAGACACTCTAGTCT+TGG - chr1_3:66342374-66342393 None:intergenic 40.0%
!!! AACTGGTTTTTGTGCAACTG+TGG + chr1_3:66342479-66342498 Msa0134750:three_prime_UTR 40.0%
!!! ACTGGTTTTTGTGCAACTGT+GGG + chr1_3:66342480-66342499 Msa0134750:three_prime_UTR 40.0%
AGGCAATACAAGAAAGGCAA+AGG + chr1_3:66342559-66342578 Msa0134750:three_prime_UTR 40.0%
TGGAGGGTCATAATGTCATA+TGG - chr1_3:66334950-66334969 None:intergenic 40.0%
!! GTAGTGTTTAGGTATTGGCT+TGG + chr1_3:66335174-66335193 Msa0134750:intron 40.0%
AAAAAGGGTTAGAGGGAAAG+TGG + chr1_3:66335232-66335251 Msa0134750:CDS 40.0%
GTGAAATTAAGCAAGGAGAG+TGG - chr1_3:66335387-66335406 None:intergenic 40.0%
GAAGAGTGAAGAAGAAGCAA+AGG + chr1_3:66335484-66335503 Msa0134750:intron 40.0%
ATGCAGAAGCTAAACCAAAC+AGG - chr1_3:66335820-66335839 None:intergenic 40.0%
GCATCCTTCAAAAGCAATTC+TGG + chr1_3:66335836-66335855 Msa0134750:intron 40.0%
!! GCTACCAGAATTGCTTTTGA+AGG - chr1_3:66335843-66335862 None:intergenic 40.0%
ACTAGCAATTCCAGCATGTT+TGG + chr1_3:66335876-66335895 Msa0134750:intron 40.0%
AGAAGCTAAACCAAACATGC+TGG - chr1_3:66335889-66335908 None:intergenic 40.0%
CTCATCTCCAAAAGCAATTC+TGG + chr1_3:66335920-66335939 Msa0134750:intron 40.0%
! GCTTCAACCAGAATTGCTTT+TGG - chr1_3:66335930-66335949 None:intergenic 40.0%
! GGTCATGAGTTACCAAGTTT+TGG + chr1_3:66336132-66336151 Msa0134750:intron 40.0%
! GTGTGTGTTTGGTTCAACTT+TGG - chr1_3:66336573-66336592 None:intergenic 40.0%
TTATTAGCAAAGGGGCTGAA+AGG + chr1_3:66336617-66336636 Msa0134750:intron 40.0%
TATTAGCAAAGGGGCTGAAA+GGG + chr1_3:66336618-66336637 Msa0134750:intron 40.0%
GAAAGGGAAACATGGAAAAG+TGG + chr1_3:66336634-66336653 Msa0134750:CDS 40.0%
CATGTGTGTAACGATGAGTA+GGG - chr1_3:66336877-66336896 None:intergenic 40.0%
TCATGTGTGTAACGATGAGT+AGG - chr1_3:66336878-66336897 None:intergenic 40.0%
CTGTTGTGACAACTAAGCTT+GGG + chr1_3:66337200-66337219 Msa0134750:intron 40.0%
!! GTTGAATTCAATGGCTTTGG+AGG + chr1_3:66337366-66337385 Msa0134750:intron 40.0%
CAAAGTCATCAGGTCTGTTT+GGG - chr1_3:66338383-66338402 None:intergenic 40.0%
! AGACCTGATGACTTTGGAAA+TGG + chr1_3:66338387-66338406 Msa0134750:intron 40.0%
TGTCCATTTCCAAAGTCATC+AGG - chr1_3:66338393-66338412 None:intergenic 40.0%
GGATTGGGAAACTTAATGAG+TGG + chr1_3:66339255-66339274 Msa0134750:CDS 40.0%
CTATGCATGCTACAATGACT+TGG + chr1_3:66339292-66339311 Msa0134750:CDS 40.0%
ATAACAGGACGTGCATAATC+TGG - chr1_3:66339335-66339354 None:intergenic 40.0%
GATTATGCACGTCCTGTTAT+TGG + chr1_3:66339335-66339354 Msa0134750:CDS 40.0%
!!! TGCTAACCTGTTTTGGTATG+TGG - chr1_3:66339407-66339426 None:intergenic 40.0%
GTTCCAAGAGATGAACAGTT+TGG + chr1_3:66339552-66339571 Msa0134750:CDS 40.0%
TGACCAAACTGTTCATCTCT+TGG - chr1_3:66339558-66339577 None:intergenic 40.0%
TACTATGCAAAGGTCCACTT+GGG - chr1_3:66339728-66339747 None:intergenic 40.0%
TTACTATGCAAAGGTCCACT+TGG - chr1_3:66339729-66339748 None:intergenic 40.0%
TTTGGAAGAGAAATGCTTGC+TGG + chr1_3:66339968-66339987 Msa0134750:CDS 40.0%
TTGGAAGAGAAATGCTTGCT+GGG + chr1_3:66339969-66339988 Msa0134750:CDS 40.0%
! TTGCTTGGATGGAACTGTTT+TGG - chr1_3:66340357-66340376 None:intergenic 40.0%
TTCTATGTGCTTTGCTTGGA+TGG - chr1_3:66340368-66340387 None:intergenic 40.0%
TGTTCTAGTGGCATAAGTCT+TGG - chr1_3:66340625-66340644 None:intergenic 40.0%
!! TAGAAACAGGAGTGTTCTAG+TGG - chr1_3:66340637-66340656 None:intergenic 40.0%
!! CTCCTGTTTCTACAAGATGA+TGG + chr1_3:66340645-66340664 Msa0134750:CDS 40.0%
TGCCATCATCTTGTAGAAAC+AGG - chr1_3:66340650-66340669 None:intergenic 40.0%
TTAAGCTTACCTCATCCACA+AGG + chr1_3:66340693-66340712 Msa0134750:CDS 40.0%
! GTTTTCACTCCATCACATGA+AGG + chr1_3:66340741-66340760 Msa0134750:CDS 40.0%
TATGCTGCTGTCAATGATTC+CGG + chr1_3:66340798-66340817 Msa0134750:CDS 40.0%
CATGAGTAAATAACCTGCAC+AGG - chr1_3:66340916-66340935 None:intergenic 40.0%
GGCTTCAAGAGCTTATGAAT+TGG - chr1_3:66340992-66341011 None:intergenic 40.0%
GATAAGTGTATGCCTAGCTA+AGG - chr1_3:66341044-66341063 None:intergenic 40.0%
AGGCATACACTTATCAATGC+TGG + chr1_3:66341049-66341068 Msa0134750:CDS 40.0%
CATACACTTATCAATGCTGG+AGG + chr1_3:66341052-66341071 Msa0134750:CDS 40.0%
TACACTTATCAATGCTGGAG+GGG + chr1_3:66341054-66341073 Msa0134750:CDS 40.0%
! CTAGAGAAAACAGTTTTCCC+TGG + chr1_3:66341079-66341098 Msa0134750:CDS 40.0%
TATGCGCACTGTTAGAAGTT+CGG - chr1_3:66341202-66341221 None:intergenic 40.0%
CCAATCCATCAACAGCAAAA+GGG - chr1_3:66341393-66341412 None:intergenic 40.0%
TCCAATCCATCAACAGCAAA+AGG - chr1_3:66341394-66341413 None:intergenic 40.0%
ATGACTATGAACTCCAACTC+TGG + chr1_3:66341488-66341507 Msa0134750:CDS 40.0%
ACTTAAAGGATAGGTCATGG+TGG + chr1_3:66341542-66341561 Msa0134750:CDS 40.0%
TTTCATGCAGCTGTGAACTT+TGG + chr1_3:66341631-66341650 Msa0134750:CDS 40.0%
TTTGGACAATACCCTTATGC+AGG + chr1_3:66341649-66341668 Msa0134750:CDS 40.0%
ATAAACCTACGACTAACCGT+TGG - chr1_3:66341691-66341710 None:intergenic 40.0%
ATGACACACCAAGAAGAGTT+TGG - chr1_3:66341795-66341814 None:intergenic 40.0%
TCGACTGAAGAGGTTTATCT+TGG + chr1_3:66341838-66341857 Msa0134750:CDS 40.0%
! CCTAGAATAATCAGAGGTGT+TGG - chr1_3:66342031-66342050 None:intergenic 40.0%
CCAACACCTCTGATTATTCT+AGG + chr1_3:66342028-66342047 Msa0134750:CDS 40.0%
! ACCTCTGATTATTCTAGGGA+GGG + chr1_3:66342033-66342052 Msa0134750:CDS 40.0%
GTTTCAGATGGATATGCTGT+TGG - chr1_3:66342082-66342101 None:intergenic 40.0%
TGACACCAAAGCAAAGTCTT+TGG - chr1_3:66342136-66342155 None:intergenic 40.0%
TCACCGACACTTTAGATTGA+AGG + chr1_3:66342169-66342188 Msa0134750:three_prime_UTR 40.0%
! ACGCCTTCAATCTAAAGTGT+CGG - chr1_3:66342175-66342194 None:intergenic 40.0%
! CTTTAGATTGAAGGCGTGTT+TGG + chr1_3:66342178-66342197 Msa0134750:three_prime_UTR 40.0%
! CACATATGTTTGGTTCGTGA+CGG - chr1_3:66342207-66342226 None:intergenic 40.0%
GTCACGAACCAAACATATGT+GGG + chr1_3:66342206-66342225 Msa0134750:three_prime_UTR 40.0%
ACACTAGACATGACACTTAC+AGG - chr1_3:66342275-66342294 None:intergenic 40.0%
TCATTCAGACACTCTAGTCT+TGG - chr1_3:66342374-66342393 None:intergenic 40.0%
!!! AACTGGTTTTTGTGCAACTG+TGG + chr1_3:66342479-66342498 Msa0134750:three_prime_UTR 40.0%
!!! ACTGGTTTTTGTGCAACTGT+GGG + chr1_3:66342480-66342499 Msa0134750:three_prime_UTR 40.0%
AGGCAATACAAGAAAGGCAA+AGG + chr1_3:66342559-66342578 Msa0134750:three_prime_UTR 40.0%
GAATTGAACTCTGCAGTGGA+GGG - chr1_3:66334966-66334985 None:intergenic 45.0%
AGAATTGAACTCTGCAGTGG+AGG - chr1_3:66334967-66334986 None:intergenic 45.0%
AGAGTGGAAAAACCTGGATC+AGG - chr1_3:66335371-66335390 None:intergenic 45.0%
ACATGGAAAAGTGGCATGCT+TGG + chr1_3:66336643-66336662 Msa0134750:CDS 45.0%
! TGATTGGGAGCATGAGAAGA+TGG + chr1_3:66336730-66336749 Msa0134750:CDS 45.0%
! GATTGGGAGCATGAGAAGAT+GGG + chr1_3:66336731-66336750 Msa0134750:CDS 45.0%
! CATCTAGGGTTACTGTCTTG+AGG - chr1_3:66336805-66336824 None:intergenic 45.0%
GTAACCCTAGATGACATTCC+AGG + chr1_3:66336812-66336831 Msa0134750:CDS 45.0%
GTGTCCTGGAATGTCATCTA+GGG - chr1_3:66336819-66336838 None:intergenic 45.0%
CTAGATGACATTCCAGGACA+CGG + chr1_3:66336818-66336837 Msa0134750:CDS 45.0%
CCAAGCTTAGTTGTCACAAC+AGG - chr1_3:66337202-66337221 None:intergenic 45.0%
CCTGTTGTGACAACTAAGCT+TGG + chr1_3:66337199-66337218 Msa0134750:intron 45.0%
CCAAAGTCATCAGGTCTGTT+TGG - chr1_3:66338384-66338403 None:intergenic 45.0%
CCAAACAGACCTGATGACTT+TGG + chr1_3:66338381-66338400 Msa0134750:intron 45.0%
GTTTCCCAATCCCTTTACCA+CGG - chr1_3:66339247-66339266 None:intergenic 45.0%
GCATAATCTGGACCATCATC+TGG - chr1_3:66339323-66339342 None:intergenic 45.0%
TATGCACGTCCTGTTATTGG+TGG + chr1_3:66339338-66339357 Msa0134750:CDS 45.0%
AAGTTTCCTTATCCACGTCG+AGG + chr1_3:66339368-66339387 Msa0134750:CDS 45.0%
AGTCGTCCACATACCAAAAC+AGG + chr1_3:66339398-66339417 Msa0134750:CDS 45.0%
TCACACAGAGATCTAAGCTC+TGG - chr1_3:66339639-66339658 None:intergenic 45.0%
!! GGAAGTTTTAACCTCCCAAG+TGG + chr1_3:66339711-66339730 Msa0134750:CDS 45.0%
! TGGAAGAGAAATGCTTGCTG+GGG + chr1_3:66339970-66339989 Msa0134750:CDS 45.0%
TGTAGACGGCGAATGATAAC+AGG - chr1_3:66340001-66340020 None:intergenic 45.0%
AAGCTGGACCCAAGTGTTTA+TGG + chr1_3:66340328-66340347 Msa0134750:CDS 45.0%
!! AGACGGGCTAACAATAGATG+AGG + chr1_3:66340396-66340415 Msa0134750:CDS 45.0%
! AGTGGCATAAGTCTTGGTGT+TGG - chr1_3:66340619-66340638 None:intergenic 45.0%
TGTTGTTCACCTTGTGGATG+AGG - chr1_3:66340705-66340724 None:intergenic 45.0%
CATCCACAAGGTGAACAACA+TGG + chr1_3:66340705-66340724 Msa0134750:CDS 45.0%
GCTCTTGAAGCCACATTTCA+AGG + chr1_3:66341000-66341019 Msa0134750:CDS 45.0%
TACCTCTTGAGCAGATTAGC+AGG - chr1_3:66341169-66341188 None:intergenic 45.0%
TGCGCATATGATTACCTCGT+GGG + chr1_3:66341214-66341233 Msa0134750:intron 45.0%
CCATGAGGGCTATTTGAATC+TGG - chr1_3:66341346-66341365 None:intergenic 45.0%
CCAGATTCAAATAGCCCTCA+TGG + chr1_3:66341343-66341362 Msa0134750:CDS 45.0%
!!! GACTACCCTTTTGCTGTTGA+TGG + chr1_3:66341385-66341404 Msa0134750:CDS 45.0%
!!! CCCTTTTGCTGTTGATGGAT+TGG + chr1_3:66341390-66341409 Msa0134750:CDS 45.0%
ACTATGAACTCCAACTCTGG+TGG + chr1_3:66341491-66341510 Msa0134750:CDS 45.0%
TGGAAAGAAGTCCGCAATGA+GGG + chr1_3:66341511-66341530 Msa0134750:CDS 45.0%
GTCATGGCGACTTAAAGGAT+AGG + chr1_3:66341533-66341552 Msa0134750:CDS 45.0%
GCGACTTAAAGGATAGGTCA+TGG + chr1_3:66341539-66341558 Msa0134750:CDS 45.0%
TTGGCAGGTAACCTGCATAA+GGG - chr1_3:66341663-66341682 None:intergenic 45.0%
TTTGGCAGGTAACCTGCATA+AGG - chr1_3:66341664-66341683 None:intergenic 45.0%
TTACCTGCCAAATCGTCCAA+CGG + chr1_3:66341672-66341691 Msa0134750:CDS 45.0%
GACTCAAGCTCTTCATACTC+TGG - chr1_3:66341730-66341749 None:intergenic 45.0%
GCTCAGTTCCAAACTCTTCT+TGG + chr1_3:66341784-66341803 Msa0134750:CDS 45.0%
! CAGCATCTGAAGTCCAATCA+GGG - chr1_3:66341876-66341895 None:intergenic 45.0%
! TCAGCATCTGAAGTCCAATC+AGG - chr1_3:66341877-66341896 None:intergenic 45.0%
GACTTCAGATGCTGAACCAT+TGG + chr1_3:66341882-66341901 Msa0134750:CDS 45.0%
CTGAACCATTGGCAGCATTT+AGG + chr1_3:66341893-66341912 Msa0134750:CDS 45.0%
AATCGCCTAAATGCTGCCAA+TGG - chr1_3:66341901-66341920 None:intergenic 45.0%
! CACCTCTGATTATTCTAGGG+AGG + chr1_3:66342032-66342051 Msa0134750:CDS 45.0%
ACCCTCCCTAGAATAATCAG+AGG - chr1_3:66342037-66342056 None:intergenic 45.0%
! TCTGATTATTCTAGGGAGGG+TGG + chr1_3:66342036-66342055 Msa0134750:CDS 45.0%
CGTCACGAACCAAACATATG+TGG + chr1_3:66342205-66342224 Msa0134750:three_prime_UTR 45.0%
CTGTGGGAATGAAAGAGCAA+AGG + chr1_3:66342496-66342515 Msa0134750:three_prime_UTR 45.0%
GAATTGAACTCTGCAGTGGA+GGG - chr1_3:66334966-66334985 None:intergenic 45.0%
AGAATTGAACTCTGCAGTGG+AGG - chr1_3:66334967-66334986 None:intergenic 45.0%
AGAGTGGAAAAACCTGGATC+AGG - chr1_3:66335371-66335390 None:intergenic 45.0%
ACATGGAAAAGTGGCATGCT+TGG + chr1_3:66336643-66336662 Msa0134750:CDS 45.0%
! TGATTGGGAGCATGAGAAGA+TGG + chr1_3:66336730-66336749 Msa0134750:CDS 45.0%
! GATTGGGAGCATGAGAAGAT+GGG + chr1_3:66336731-66336750 Msa0134750:CDS 45.0%
! CATCTAGGGTTACTGTCTTG+AGG - chr1_3:66336805-66336824 None:intergenic 45.0%
GTAACCCTAGATGACATTCC+AGG + chr1_3:66336812-66336831 Msa0134750:CDS 45.0%
GTGTCCTGGAATGTCATCTA+GGG - chr1_3:66336819-66336838 None:intergenic 45.0%
CTAGATGACATTCCAGGACA+CGG + chr1_3:66336818-66336837 Msa0134750:CDS 45.0%
CCAAGCTTAGTTGTCACAAC+AGG - chr1_3:66337202-66337221 None:intergenic 45.0%
CCTGTTGTGACAACTAAGCT+TGG + chr1_3:66337199-66337218 Msa0134750:intron 45.0%
CCAAAGTCATCAGGTCTGTT+TGG - chr1_3:66338384-66338403 None:intergenic 45.0%
CCAAACAGACCTGATGACTT+TGG + chr1_3:66338381-66338400 Msa0134750:intron 45.0%
GTTTCCCAATCCCTTTACCA+CGG - chr1_3:66339247-66339266 None:intergenic 45.0%
GCATAATCTGGACCATCATC+TGG - chr1_3:66339323-66339342 None:intergenic 45.0%
TATGCACGTCCTGTTATTGG+TGG + chr1_3:66339338-66339357 Msa0134750:CDS 45.0%
AAGTTTCCTTATCCACGTCG+AGG + chr1_3:66339368-66339387 Msa0134750:CDS 45.0%
AGTCGTCCACATACCAAAAC+AGG + chr1_3:66339398-66339417 Msa0134750:CDS 45.0%
TCACACAGAGATCTAAGCTC+TGG - chr1_3:66339639-66339658 None:intergenic 45.0%
!! GGAAGTTTTAACCTCCCAAG+TGG + chr1_3:66339711-66339730 Msa0134750:CDS 45.0%
! TGGAAGAGAAATGCTTGCTG+GGG + chr1_3:66339970-66339989 Msa0134750:CDS 45.0%
TGTAGACGGCGAATGATAAC+AGG - chr1_3:66340001-66340020 None:intergenic 45.0%
AAGCTGGACCCAAGTGTTTA+TGG + chr1_3:66340328-66340347 Msa0134750:CDS 45.0%
!! AGACGGGCTAACAATAGATG+AGG + chr1_3:66340396-66340415 Msa0134750:CDS 45.0%
! AGTGGCATAAGTCTTGGTGT+TGG - chr1_3:66340619-66340638 None:intergenic 45.0%
TGTTGTTCACCTTGTGGATG+AGG - chr1_3:66340705-66340724 None:intergenic 45.0%
CATCCACAAGGTGAACAACA+TGG + chr1_3:66340705-66340724 Msa0134750:CDS 45.0%
GCTCTTGAAGCCACATTTCA+AGG + chr1_3:66341000-66341019 Msa0134750:CDS 45.0%
TACCTCTTGAGCAGATTAGC+AGG - chr1_3:66341169-66341188 None:intergenic 45.0%
TGCGCATATGATTACCTCGT+GGG + chr1_3:66341214-66341233 Msa0134750:intron 45.0%
CCATGAGGGCTATTTGAATC+TGG - chr1_3:66341346-66341365 None:intergenic 45.0%
CCAGATTCAAATAGCCCTCA+TGG + chr1_3:66341343-66341362 Msa0134750:CDS 45.0%
!!! GACTACCCTTTTGCTGTTGA+TGG + chr1_3:66341385-66341404 Msa0134750:CDS 45.0%
!!! CCCTTTTGCTGTTGATGGAT+TGG + chr1_3:66341390-66341409 Msa0134750:CDS 45.0%
ACTATGAACTCCAACTCTGG+TGG + chr1_3:66341491-66341510 Msa0134750:CDS 45.0%
TGGAAAGAAGTCCGCAATGA+GGG + chr1_3:66341511-66341530 Msa0134750:CDS 45.0%
GTCATGGCGACTTAAAGGAT+AGG + chr1_3:66341533-66341552 Msa0134750:CDS 45.0%
GCGACTTAAAGGATAGGTCA+TGG + chr1_3:66341539-66341558 Msa0134750:CDS 45.0%
TTGGCAGGTAACCTGCATAA+GGG - chr1_3:66341663-66341682 None:intergenic 45.0%
TTTGGCAGGTAACCTGCATA+AGG - chr1_3:66341664-66341683 None:intergenic 45.0%
TTACCTGCCAAATCGTCCAA+CGG + chr1_3:66341672-66341691 Msa0134750:CDS 45.0%
GACTCAAGCTCTTCATACTC+TGG - chr1_3:66341730-66341749 None:intergenic 45.0%
GCTCAGTTCCAAACTCTTCT+TGG + chr1_3:66341784-66341803 Msa0134750:CDS 45.0%
! CAGCATCTGAAGTCCAATCA+GGG - chr1_3:66341876-66341895 None:intergenic 45.0%
! TCAGCATCTGAAGTCCAATC+AGG - chr1_3:66341877-66341896 None:intergenic 45.0%
GACTTCAGATGCTGAACCAT+TGG + chr1_3:66341882-66341901 Msa0134750:CDS 45.0%
CTGAACCATTGGCAGCATTT+AGG + chr1_3:66341893-66341912 Msa0134750:CDS 45.0%
AATCGCCTAAATGCTGCCAA+TGG - chr1_3:66341901-66341920 None:intergenic 45.0%
! CACCTCTGATTATTCTAGGG+AGG + chr1_3:66342032-66342051 Msa0134750:CDS 45.0%
ACCCTCCCTAGAATAATCAG+AGG - chr1_3:66342037-66342056 None:intergenic 45.0%
! TCTGATTATTCTAGGGAGGG+TGG + chr1_3:66342036-66342055 Msa0134750:CDS 45.0%
CGTCACGAACCAAACATATG+TGG + chr1_3:66342205-66342224 Msa0134750:three_prime_UTR 45.0%
CTGTGGGAATGAAAGAGCAA+AGG + chr1_3:66342496-66342515 Msa0134750:three_prime_UTR 45.0%
!! AACAAAATAAATATAAATAT+AGG + chr1_3:66337320-66337339 Msa0134750:intron 5.0%
!! TATGATTAATATTAAAAAAA+AGG - chr1_3:66337695-66337714 None:intergenic 5.0%
!! TTTCATTAATTAATTAATAT+TGG + chr1_3:66339901-66339920 Msa0134750:intron 5.0%
!!! TTTTTACTTATATTTAAATT+CGG - chr1_3:66340055-66340074 None:intergenic 5.0%
!! AACAAAATAAATATAAATAT+AGG + chr1_3:66337320-66337339 Msa0134750:intron 5.0%
!! TATGATTAATATTAAAAAAA+AGG - chr1_3:66337695-66337714 None:intergenic 5.0%
!! TTTCATTAATTAATTAATAT+TGG + chr1_3:66339901-66339920 Msa0134750:intron 5.0%
!!! TTTTTACTTATATTTAAATT+CGG - chr1_3:66340055-66340074 None:intergenic 5.0%
! AGTGTTACTGCTCCTGATCC+AGG + chr1_3:66335356-66335375 Msa0134750:CDS 50.0%
GCAAGGAGAGTGGAAAAACC+TGG - chr1_3:66335377-66335396 None:intergenic 50.0%
AAGGGGCTGAAAGGGAAACA+TGG + chr1_3:66336626-66336645 Msa0134750:CDS 50.0%
GAAAAGTGGCATGCTTGGAG+AGG + chr1_3:66336648-66336667 Msa0134750:CDS 50.0%
CATGAGAAGATGGGAGTTCC+AGG + chr1_3:66336740-66336759 Msa0134750:CDS 50.0%
CGTGTCCTGGAATGTCATCT+AGG - chr1_3:66336820-66336839 None:intergenic 50.0%
AAAGTTACAGGACCGTGTCC+TGG - chr1_3:66336833-66336852 None:intergenic 50.0%
GAATTCCACAGTAGCACACC+AGG - chr1_3:66337540-66337559 None:intergenic 50.0%
TCTTCTCTCAACTTGCGCAG+TGG - chr1_3:66339209-66339228 None:intergenic 50.0%
TTGCTACCCTCCGTGGTAAA+GGG + chr1_3:66339234-66339253 Msa0134750:CDS 50.0%
GACTTGGGAACTCCAGATGA+TGG + chr1_3:66339308-66339327 Msa0134750:CDS 50.0%
GTTCTTCCTCGACGTGGATA+AGG - chr1_3:66339377-66339396 None:intergenic 50.0%
TTCACTCAAATCCGTCGCTC+AGG + chr1_3:66339605-66339624 Msa0134750:CDS 50.0%
TGGAAGCAAAACCTGAGCGA+CGG - chr1_3:66339619-66339638 None:intergenic 50.0%
TATGCAAAGGTCCACTTGGG+AGG - chr1_3:66339725-66339744 None:intergenic 50.0%
CTTTGATCACGTCAGGCACA+GGG - chr1_3:66339824-66339843 None:intergenic 50.0%
TGGAGGACTGATGAGGAGTT+TGG + chr1_3:66339950-66339969 Msa0134750:CDS 50.0%
GCTCCATGTTGTTCACCTTG+TGG - chr1_3:66340711-66340730 None:intergenic 50.0%
GCTGCTACTCCTTCATGTGA+TGG - chr1_3:66340753-66340772 None:intergenic 50.0%
TGCTTTAGCCAACTGCCACA+CGG - chr1_3:66340778-66340797 None:intergenic 50.0%
TGCCTGCTAATCTGCTCAAG+AGG + chr1_3:66341164-66341183 Msa0134750:CDS 50.0%
GTGCGCATATGATTACCTCG+TGG + chr1_3:66341213-66341232 Msa0134750:intron 50.0%
GCGCATATGATTACCTCGTG+GGG + chr1_3:66341215-66341234 Msa0134750:intron 50.0%
CGCATATGATTACCTCGTGG+GGG + chr1_3:66341216-66341235 Msa0134750:intron 50.0%
GCATATGATTACCTCGTGGG+GGG + chr1_3:66341217-66341236 Msa0134750:intron 50.0%
GGACTTCTTTCCACCAGAGT+TGG - chr1_3:66341504-66341523 None:intergenic 50.0%
GTGGAAAGAAGTCCGCAATG+AGG + chr1_3:66341510-66341529 Msa0134750:CDS 50.0%
TGAGGGTCATGGCGACTTAA+AGG + chr1_3:66341528-66341547 Msa0134750:CDS 50.0%
! TAACCGTTGGACGATTTGGC+AGG - chr1_3:66341678-66341697 None:intergenic 50.0%
CGACTAACCGTTGGACGATT+TGG - chr1_3:66341682-66341701 None:intergenic 50.0%
! ATCGTCCAACGGTTAGTCGT+AGG + chr1_3:66341683-66341702 Msa0134750:CDS 50.0%
CGTAGGTTTATGCCTGAGCA+AGG + chr1_3:66341700-66341719 Msa0134750:CDS 50.0%
TACTCTGGTGTACCTTGCTC+AGG - chr1_3:66341715-66341734 None:intergenic 50.0%
GTCTAGGCATTCGACTGAAG+AGG + chr1_3:66341828-66341847 Msa0134750:CDS 50.0%
GACAGACAGTAGACCCTGAT+TGG + chr1_3:66341860-66341879 Msa0134750:CDS 50.0%
! AGTGTTACTGCTCCTGATCC+AGG + chr1_3:66335356-66335375 Msa0134750:CDS 50.0%
GCAAGGAGAGTGGAAAAACC+TGG - chr1_3:66335377-66335396 None:intergenic 50.0%
AAGGGGCTGAAAGGGAAACA+TGG + chr1_3:66336626-66336645 Msa0134750:CDS 50.0%
GAAAAGTGGCATGCTTGGAG+AGG + chr1_3:66336648-66336667 Msa0134750:CDS 50.0%
CATGAGAAGATGGGAGTTCC+AGG + chr1_3:66336740-66336759 Msa0134750:CDS 50.0%
CGTGTCCTGGAATGTCATCT+AGG - chr1_3:66336820-66336839 None:intergenic 50.0%
AAAGTTACAGGACCGTGTCC+TGG - chr1_3:66336833-66336852 None:intergenic 50.0%
GAATTCCACAGTAGCACACC+AGG - chr1_3:66337540-66337559 None:intergenic 50.0%
TCTTCTCTCAACTTGCGCAG+TGG - chr1_3:66339209-66339228 None:intergenic 50.0%
TTGCTACCCTCCGTGGTAAA+GGG + chr1_3:66339234-66339253 Msa0134750:CDS 50.0%
GACTTGGGAACTCCAGATGA+TGG + chr1_3:66339308-66339327 Msa0134750:CDS 50.0%
GTTCTTCCTCGACGTGGATA+AGG - chr1_3:66339377-66339396 None:intergenic 50.0%
TTCACTCAAATCCGTCGCTC+AGG + chr1_3:66339605-66339624 Msa0134750:CDS 50.0%
TGGAAGCAAAACCTGAGCGA+CGG - chr1_3:66339619-66339638 None:intergenic 50.0%
TATGCAAAGGTCCACTTGGG+AGG - chr1_3:66339725-66339744 None:intergenic 50.0%
CTTTGATCACGTCAGGCACA+GGG - chr1_3:66339824-66339843 None:intergenic 50.0%
TGGAGGACTGATGAGGAGTT+TGG + chr1_3:66339950-66339969 Msa0134750:CDS 50.0%
GCTCCATGTTGTTCACCTTG+TGG - chr1_3:66340711-66340730 None:intergenic 50.0%
GCTGCTACTCCTTCATGTGA+TGG - chr1_3:66340753-66340772 None:intergenic 50.0%
TGCTTTAGCCAACTGCCACA+CGG - chr1_3:66340778-66340797 None:intergenic 50.0%
TGCCTGCTAATCTGCTCAAG+AGG + chr1_3:66341164-66341183 Msa0134750:CDS 50.0%
GTGCGCATATGATTACCTCG+TGG + chr1_3:66341213-66341232 Msa0134750:intron 50.0%
GCGCATATGATTACCTCGTG+GGG + chr1_3:66341215-66341234 Msa0134750:intron 50.0%
CGCATATGATTACCTCGTGG+GGG + chr1_3:66341216-66341235 Msa0134750:intron 50.0%
GCATATGATTACCTCGTGGG+GGG + chr1_3:66341217-66341236 Msa0134750:intron 50.0%
GGACTTCTTTCCACCAGAGT+TGG - chr1_3:66341504-66341523 None:intergenic 50.0%
GTGGAAAGAAGTCCGCAATG+AGG + chr1_3:66341510-66341529 Msa0134750:CDS 50.0%
TGAGGGTCATGGCGACTTAA+AGG + chr1_3:66341528-66341547 Msa0134750:CDS 50.0%
! TAACCGTTGGACGATTTGGC+AGG - chr1_3:66341678-66341697 None:intergenic 50.0%
CGACTAACCGTTGGACGATT+TGG - chr1_3:66341682-66341701 None:intergenic 50.0%
! ATCGTCCAACGGTTAGTCGT+AGG + chr1_3:66341683-66341702 Msa0134750:CDS 50.0%
CGTAGGTTTATGCCTGAGCA+AGG + chr1_3:66341700-66341719 Msa0134750:CDS 50.0%
TACTCTGGTGTACCTTGCTC+AGG - chr1_3:66341715-66341734 None:intergenic 50.0%
GTCTAGGCATTCGACTGAAG+AGG + chr1_3:66341828-66341847 Msa0134750:CDS 50.0%
GACAGACAGTAGACCCTGAT+TGG + chr1_3:66341860-66341879 Msa0134750:CDS 50.0%
AAGTGGCATGCTTGGAGAGG+TGG + chr1_3:66336651-66336670 Msa0134750:CDS 55.0%
! CTTTGCCTGGTGTGCTACTG+TGG + chr1_3:66337532-66337551 Msa0134750:intron 55.0%
AGTGGCTCCGGTGTATCACA+TGG - chr1_3:66339191-66339210 None:intergenic 55.0%
!! GAAGAACTTGCTACCCTCCG+TGG + chr1_3:66339227-66339246 Msa0134750:CDS 55.0%
CTTGCTACCCTCCGTGGTAA+AGG + chr1_3:66339233-66339252 Msa0134750:CDS 55.0%
ACCCTCCGTGGTAAAGGGAT+TGG + chr1_3:66339239-66339258 Msa0134750:CDS 55.0%
CCCAATCCCTTTACCACGGA+GGG - chr1_3:66339243-66339262 None:intergenic 55.0%
CCCTCCGTGGTAAAGGGATT+GGG + chr1_3:66339240-66339259 Msa0134750:CDS 55.0%
TCCCAATCCCTTTACCACGG+AGG - chr1_3:66339244-66339263 None:intergenic 55.0%
! CGACTAGTTCTTCCTCGACG+TGG - chr1_3:66339383-66339402 None:intergenic 55.0%
CCTTTGATCACGTCAGGCAC+AGG - chr1_3:66339825-66339844 None:intergenic 55.0%
CCTGTGCCTGACGTGATCAA+AGG + chr1_3:66339822-66339841 Msa0134750:CDS 55.0%
GACTGCATGGAGGACTGATG+AGG + chr1_3:66339943-66339962 Msa0134750:CDS 55.0%
ATTTCCTCCTGCCAGCAAGC+TGG + chr1_3:66340312-66340331 Msa0134750:CDS 55.0%
AACACTTGGGTCCAGCTTGC+TGG - chr1_3:66340326-66340345 None:intergenic 55.0%
TTTAGCCAACTGCCACACGG+TGG - chr1_3:66340775-66340794 None:intergenic 55.0%
GAAGTCCGCAATGAGGGTCA+TGG + chr1_3:66341517-66341536 Msa0134750:CDS 55.0%
AGTCGCCATGACCCTCATTG+CGG - chr1_3:66341525-66341544 None:intergenic 55.0%
! GCGATTTTCGCAGAAGCTGC+TGG + chr1_3:66341915-66341934 Msa0134750:CDS 55.0%
! GAGGGTGGACTCACTGGTAA+AGG + chr1_3:66342051-66342070 Msa0134750:CDS 55.0%
AAGTGGCATGCTTGGAGAGG+TGG + chr1_3:66336651-66336670 Msa0134750:CDS 55.0%
! CTTTGCCTGGTGTGCTACTG+TGG + chr1_3:66337532-66337551 Msa0134750:intron 55.0%
AGTGGCTCCGGTGTATCACA+TGG - chr1_3:66339191-66339210 None:intergenic 55.0%
!! GAAGAACTTGCTACCCTCCG+TGG + chr1_3:66339227-66339246 Msa0134750:CDS 55.0%
CTTGCTACCCTCCGTGGTAA+AGG + chr1_3:66339233-66339252 Msa0134750:CDS 55.0%
ACCCTCCGTGGTAAAGGGAT+TGG + chr1_3:66339239-66339258 Msa0134750:CDS 55.0%
CCCAATCCCTTTACCACGGA+GGG - chr1_3:66339243-66339262 None:intergenic 55.0%
CCCTCCGTGGTAAAGGGATT+GGG + chr1_3:66339240-66339259 Msa0134750:CDS 55.0%
TCCCAATCCCTTTACCACGG+AGG - chr1_3:66339244-66339263 None:intergenic 55.0%
! CGACTAGTTCTTCCTCGACG+TGG - chr1_3:66339383-66339402 None:intergenic 55.0%
CCTTTGATCACGTCAGGCAC+AGG - chr1_3:66339825-66339844 None:intergenic 55.0%
CCTGTGCCTGACGTGATCAA+AGG + chr1_3:66339822-66339841 Msa0134750:CDS 55.0%
GACTGCATGGAGGACTGATG+AGG + chr1_3:66339943-66339962 Msa0134750:CDS 55.0%
ATTTCCTCCTGCCAGCAAGC+TGG + chr1_3:66340312-66340331 Msa0134750:CDS 55.0%
AACACTTGGGTCCAGCTTGC+TGG - chr1_3:66340326-66340345 None:intergenic 55.0%
TTTAGCCAACTGCCACACGG+TGG - chr1_3:66340775-66340794 None:intergenic 55.0%
GAAGTCCGCAATGAGGGTCA+TGG + chr1_3:66341517-66341536 Msa0134750:CDS 55.0%
AGTCGCCATGACCCTCATTG+CGG - chr1_3:66341525-66341544 None:intergenic 55.0%
! GCGATTTTCGCAGAAGCTGC+TGG + chr1_3:66341915-66341934 Msa0134750:CDS 55.0%
! GAGGGTGGACTCACTGGTAA+AGG + chr1_3:66342051-66342070 Msa0134750:CDS 55.0%
CTCAACTTGCGCAGTGGCTC+CGG - chr1_3:66339203-66339222 None:intergenic 60.0%
CGTCAGGCACAGGGAATCTG+AGG - chr1_3:66339815-66339834 None:intergenic 60.0%
AAGGAGTAGCAGCCACCGTG+TGG + chr1_3:66340760-66340779 Msa0134750:CDS 60.0%
ACCTCGTGGGGGGAACCTAT+TGG + chr1_3:66341227-66341246 Msa0134750:intron 60.0%
TCCAATAGGTTCCCCCCACG+AGG - chr1_3:66341231-66341250 None:intergenic 60.0%
! TCTAGGGAGGGTGGACTCAC+TGG + chr1_3:66342045-66342064 Msa0134750:CDS 60.0%
CTCAACTTGCGCAGTGGCTC+CGG - chr1_3:66339203-66339222 None:intergenic 60.0%
CGTCAGGCACAGGGAATCTG+AGG - chr1_3:66339815-66339834 None:intergenic 60.0%
AAGGAGTAGCAGCCACCGTG+TGG + chr1_3:66340760-66340779 Msa0134750:CDS 60.0%
ACCTCGTGGGGGGAACCTAT+TGG + chr1_3:66341227-66341246 Msa0134750:intron 60.0%
TCCAATAGGTTCCCCCCACG+AGG - chr1_3:66341231-66341250 None:intergenic 60.0%
! TCTAGGGAGGGTGGACTCAC+TGG + chr1_3:66342045-66342064 Msa0134750:CDS 60.0%
!! CTTGGGTCCAGCTTGCTGGC+AGG - chr1_3:66340322-66340341 None:intergenic 65.0%
AGCAGCCACCGTGTGGCAGT+TGG + chr1_3:66340767-66340786 Msa0134750:CDS 65.0%
!! CTTGGGTCCAGCTTGCTGGC+AGG - chr1_3:66340322-66340341 None:intergenic 65.0%
AGCAGCCACCGTGTGGCAGT+TGG + chr1_3:66340767-66340786 Msa0134750:CDS 65.0%
!! GGGTCCAGCTTGCTGGCAGG+AGG - chr1_3:66340319-66340338 None:intergenic 70.0%
!! GGGTCCAGCTTGCTGGCAGG+AGG - chr1_3:66340319-66340338 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 66334942 66342634 66334942 ID=Msa0134750;Name=Msa0134750
chr1_3 mRNA 66334942 66342634 66334942 ID=Msa0134750-mRNA-1;Parent=Msa0134750;Name=Msa0134750-mRNA-1;_AED=0.08;_eAED=0.08;_QI=89|1|1|1|0.88|0.8|10|536|856
chr1_3 exon 66334942 66334993 66334942 ID=Msa0134750-mRNA-1:exon:22629;Parent=Msa0134750-mRNA-1
chr1_3 exon 66335178 66335377 66335178 ID=Msa0134750-mRNA-1:exon:22630;Parent=Msa0134750-mRNA-1
chr1_3 exon 66336624 66336919 66336624 ID=Msa0134750-mRNA-1:exon:22631;Parent=Msa0134750-mRNA-1
chr1_3 exon 66339179 66339419 66339179 ID=Msa0134750-mRNA-1:exon:22632;Parent=Msa0134750-mRNA-1
chr1_3 exon 66339505 66339843 66339505 ID=Msa0134750-mRNA-1:exon:22633;Parent=Msa0134750-mRNA-1
chr1_3 exon 66339936 66340021 66339936 ID=Msa0134750-mRNA-1:exon:22634;Parent=Msa0134750-mRNA-1
chr1_3 exon 66340310 66340417 66340310 ID=Msa0134750-mRNA-1:exon:22635;Parent=Msa0134750-mRNA-1
chr1_3 exon 66340540 66340844 66340540 ID=Msa0134750-mRNA-1:exon:22636;Parent=Msa0134750-mRNA-1
chr1_3 exon 66340922 66341185 66340922 ID=Msa0134750-mRNA-1:exon:22637;Parent=Msa0134750-mRNA-1
chr1_3 exon 66341330 66342634 66341330 ID=Msa0134750-mRNA-1:exon:22638;Parent=Msa0134750-mRNA-1
chr1_3 five_prime_UTR 66334942 66334993 66334942 ID=Msa0134750-mRNA-1:five_prime_utr;Parent=Msa0134750-mRNA-1
chr1_3 five_prime_UTR 66335178 66335214 66335178 ID=Msa0134750-mRNA-1:five_prime_utr;Parent=Msa0134750-mRNA-1
chr1_3 CDS 66335215 66335377 66335215 ID=Msa0134750-mRNA-1:cds;Parent=Msa0134750-mRNA-1
chr1_3 CDS 66336624 66336919 66336624 ID=Msa0134750-mRNA-1:cds;Parent=Msa0134750-mRNA-1
chr1_3 CDS 66339179 66339419 66339179 ID=Msa0134750-mRNA-1:cds;Parent=Msa0134750-mRNA-1
chr1_3 CDS 66339505 66339843 66339505 ID=Msa0134750-mRNA-1:cds;Parent=Msa0134750-mRNA-1
chr1_3 CDS 66339936 66340021 66339936 ID=Msa0134750-mRNA-1:cds;Parent=Msa0134750-mRNA-1
chr1_3 CDS 66340310 66340417 66340310 ID=Msa0134750-mRNA-1:cds;Parent=Msa0134750-mRNA-1
chr1_3 CDS 66340540 66340844 66340540 ID=Msa0134750-mRNA-1:cds;Parent=Msa0134750-mRNA-1
chr1_3 CDS 66340922 66341185 66340922 ID=Msa0134750-mRNA-1:cds;Parent=Msa0134750-mRNA-1
chr1_3 CDS 66341330 66342098 66341330 ID=Msa0134750-mRNA-1:cds;Parent=Msa0134750-mRNA-1
chr1_3 three_prime_UTR 66342099 66342634 66342099 ID=Msa0134750-mRNA-1:three_prime_utr;Parent=Msa0134750-mRNA-1
Gene Sequence

>Msa0134750

ATGGAGATGAATTACAAAAAAAGGGTTAGAGGGAAAGTGGTTTTAATGAAGAAAAGCTTGTTGGATTTCCATGACATCAAATCAAACGTTCTTGATCGAATTGATGAGTTTTTGGGCAAGGGTGTTTCACTTCAGCTCATTAGTGTTACTGCTCCTGATCCAGCAAAGGGGCTGAAAGGGAAACATGGAAAAGTGGCATGCTTGGAGAGGTGGATGTCAAGCATATCATCATTGACAACAGCTACAGACACAGAATTCTCAGTTACATTTGATTGGGAGCATGAGAAGATGGGAGTTCCAGGAGCTTTCATAATCAGAAATAATCACCATAGCCAATTTTACCTCAAGACAGTAACCCTAGATGACATTCCAGGACACGGTCCTGTAACTTTTGTTTGCAACTCTTGGGTTTACCCTACTCATCGTTACACACATGATCGTGTTTTCTTTGCAAACAAGGCTTATCTTCCATGTGATACACCGGAGCCACTGCGCAAGTTGAGAGAAGAAGAACTTGCTACCCTCCGTGGTAAAGGGATTGGGAAACTTAATGAGTGGGATAGAGTGTATGACTATGCATGCTACAATGACTTGGGAACTCCAGATGATGGTCCAGATTATGCACGTCCTGTTATTGGTGGATCAGAAAAGTTTCCTTATCCACGTCGAGGAAGAACTAGTCGTCCACATACCAAAACAGATCCTAAAACTGAGTCAAGATTGCATCTCCTGAATCTAAACATTTATGTTCCAAGAGATGAACAGTTTGGTCATGTAAAGTTTTCAGACTTTCTAGCTTATTCACTCAAATCCGTCGCTCAGGTTTTGCTTCCAGAGCTTAGATCTCTGTGTGACAAAACTATTAATGAGTTTGATACTTTCCAAGATGTACTTGATATTTATGAAGGAAGTTTTAACCTCCCAAGTGGACCTTTGCATAGTAAAATTAGAGACCTTATTCCTTATGAGATTTTTAGAGAACTTGTTAGGAATGATGGTGAGAAATTCCTCAGATTCCCTGTGCCTGACGTGATCAAAGCTAGTAAGACTGCATGGAGGACTGATGAGGAGTTTGGAAGAGAAATGCTTGCTGGGGTTAATCCTGTTATCATTCGCCGTCTACAAGAATTTCCTCCTGCCAGCAAGCTGGACCCAAGTGTTTATGGAGACCAAAACAGTTCCATCCAAGCAAAGCACATAGAAAATAGTTTAGACGGGCTAACAATAGATGAGGCTCTTGAAAGTGATAAGCTCTATATATTAGATCATCATGATGCTCTGATGCCATACCTAAGTAGAATAAACTCTACCAACACCAAGACTTATGCCACTAGAACACTCCTGTTTCTACAAGATGATGGCACGTTGAAGCCACTTGCTATTGAATTAAGCTTACCTCATCCACAAGGTGAACAACATGGAGCTGTCAGTAAAGTTTTCACTCCATCACATGAAGGAGTAGCAGCCACCGTGTGGCAGTTGGCTAAAGCATATGCTGCTGTCAATGATTCCGGATATCATCAACTAGTTAGCCATTGGTTATTTACTCATGCAGTGATTGAACCATTTATAATAGCTACAAACAGACAACTGAGTATTCTTCATCCAATTCATAAGCTCTTGAAGCCACATTTCAAGGATACAATGCATATAAATGCCTTAGCTAGGCATACACTTATCAATGCTGGAGGGGTACTAGAGAAAACAGTTTTCCCTGGTAAATTTGCATTGGAAATGTCGGCTGTTGTATATAAAAATTGGGTATTCACTGAACAAGCACTGCCTGCTAATCTGCTCAAGAGAGGCATAGCAGTTCCAGATTCAAATAGCCCTCATGGACTAAAACTTCTGATAGAAGACTACCCTTTTGCTGTTGATGGATTGGAAATATGGGATGCAATTGAAACTTGGGTGAGTGAATATTGTAATTTCTACTACACATCTGATGACATGATTGAGAATGACTATGAACTCCAACTCTGGTGGAAAGAAGTCCGCAATGAGGGTCATGGCGACTTAAAGGATAGGTCATGGTGGCCACAAATGAAGACTAGAATTGAGCTCATACAATCATGCACCATTATTATATGGGTGGCTTCTGCTTTTCATGCAGCTGTGAACTTTGGACAATACCCTTATGCAGGTTACCTGCCAAATCGTCCAACGGTTAGTCGTAGGTTTATGCCTGAGCAAGGTACACCAGAGTATGAAGAGCTTGAGTCAGATCCTGAATTAGCATTCTTAAAAACAATCACAGCTCAGTTCCAAACTCTTCTTGGTGTGTCATTGATAGAAGTTCTGTCTAGGCATTCGACTGAAGAGGTTTATCTTGGACAGACAGTAGACCCTGATTGGACTTCAGATGCTGAACCATTGGCAGCATTTAGGCGATTTTCGCAGAAGCTGCTGGAAATTGAGAATAATATCATGAAAAGGAACAAAGACCCAAGTTTGAAGAACAGAAATGGGCCAGTGAAATTGCCTTATACTCTTCTGTTTCCCAACACCTCTGATTATTCTAGGGAGGGTGGACTCACTGGTAAAGGAATTCCCAACAGCATATCCATCTGA
Protein sequence

>Msa0134750

MEMNYKKRVRGKVVLMKKSLLDFHDIKSNVLDRIDEFLGKGVSLQLISVTAPDPAKGLKGKHGKVACLERWMSSISSLTTATDTEFSVTFDWEHEKMGVPGAFIIRNNHHSQFYLKTVTLDDIPGHGPVTFVCNSWVYPTHRYTHDRVFFANKAYLPCDTPEPLRKLREEELATLRGKGIGKLNEWDRVYDYACYNDLGTPDDGPDYARPVIGGSEKFPYPRRGRTSRPHTKTDPKTESRLHLLNLNIYVPRDEQFGHVKFSDFLAYSLKSVAQVLLPELRSLCDKTINEFDTFQDVLDIYEGSFNLPSGPLHSKIRDLIPYEIFRELVRNDGEKFLRFPVPDVIKASKTAWRTDEEFGREMLAGVNPVIIRRLQEFPPASKLDPSVYGDQNSSIQAKHIENSLDGLTIDEALESDKLYILDHHDALMPYLSRINSTNTKTYATRTLLFLQDDGTLKPLAIELSLPHPQGEQHGAVSKVFTPSHEGVAATVWQLAKAYAAVNDSGYHQLVSHWLFTHAVIEPFIIATNRQLSILHPIHKLLKPHFKDTMHINALARHTLINAGGVLEKTVFPGKFALEMSAVVYKNWVFTEQALPANLLKRGIAVPDSNSPHGLKLLIEDYPFAVDGLEIWDAIETWVSEYCNFYYTSDDMIENDYELQLWWKEVRNEGHGDLKDRSWWPQMKTRIELIQSCTIIIWVASAFHAAVNFGQYPYAGYLPNRPTVSRRFMPEQGTPEYEELESDPELAFLKTITAQFQTLLGVSLIEVLSRHSTEEVYLGQTVDPDWTSDAEPLAAFRRFSQKLLEIENNIMKRNKDPSLKNRNGPVKLPYTLLFPNTSDYSREGGLTGKGIPNSISI*