AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0134760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134760 MtrunA17_Chr5g0394361 57.870 216 29 3 1 161 1 209 1.84e-74 221
Msa0134760 MtrunA17_Chr1g0205601 64.948 97 20 2 1 90 1 90 4.44e-34 115
Msa0134760 MtrunA17_Chr1g0205591 93.878 49 3 0 113 161 41 89 6.60e-27 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134760 AT4G02770.1 63.087 149 17 1 51 161 60 208 2.74e-59 183
Msa0134760 AT1G03130.1 63.699 146 15 1 54 161 59 204 5.09e-59 182

Find 64 sgRNAs with CRISPR-Local

Find 440 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGTGCTGCCACTGAAAAT+TGG 0.193952 1_3:-66343360 None:intergenic
CGACCAGGGTTCACTTTCTC+TGG 0.220355 1_3:-66345246 None:intergenic
CAACTTGGGCCTTACATAAA+AGG 0.267884 1_3:-66343386 None:intergenic
AAAATTGGGGAGGGAGTGTC+TGG 0.303697 1_3:-66343345 None:intergenic
ATTTCAAAGATTTGTTCTTT+TGG 0.309811 1_3:-66343438 None:intergenic
CAGTGCTGCCACTGAAAATT+GGG 0.315756 1_3:-66343359 None:intergenic
GGTCAGAACTTTAGAACTAT+TGG 0.337450 1_3:+66345279 Msa0134760:CDS
ATTGTGAGCTTGAGAGGGTT+TGG 0.372107 1_3:-66343251 None:intergenic
AGAGATACGGTCATTAGGTT+TGG 0.376453 1_3:-66343189 None:intergenic
CTCTTCACCCCTCCTCTCTC+TGG 0.385923 1_3:+66343164 Msa0134760:CDS
GGTACAGAGATACGGTCATT+AGG 0.394276 1_3:-66343194 None:intergenic
CCACTGAACTTAACCTCTAT+AGG 0.417689 1_3:-66345315 None:intergenic
GAGATACGGTCATTAGGTTT+GGG 0.426468 1_3:-66343188 None:intergenic
TCTGGGTACACACCATCCTT+AGG 0.434810 1_3:-66345228 None:intergenic
AGAGAGAGGAGGGGTGAAGA+GGG 0.442080 1_3:-66343162 None:intergenic
TGACCAACCCCTTGGCGACC+AGG 0.470301 1_3:-66345261 None:intergenic
TAAGAATGTTAGTCCTATAG+AGG 0.473752 1_3:+66345302 Msa0134760:CDS
TTGCTGAGGAAGGCACCAAT+TGG 0.475146 1_3:+66343300 Msa0134760:intron
GTTTGGGACCAGAGAGAGGA+GGG 0.477785 1_3:-66343172 None:intergenic
CAGAGAGAGGAGGGGTGAAG+AGG 0.479426 1_3:-66343163 None:intergenic
CTTGAAATTGTGAGCTTGAG+AGG 0.480961 1_3:-66343257 None:intergenic
CAAATCTTTGAAATGCCTAC+TGG 0.482126 1_3:+66343447 Msa0134760:CDS
GAGAGGAGGGGTGAAGAGGG+AGG 0.499448 1_3:-66343159 None:intergenic
AACCCTGGTCGCCAAGGGGT+TGG 0.500962 1_3:+66345258 Msa0134760:CDS
TCACATAAAATTCCTCAACT+TGG 0.507482 1_3:-66343401 None:intergenic
TCAGGTGGGGTGAAGCCAAT+TGG 0.510396 1_3:-66343315 None:intergenic
GACCAGGGTTCACTTTCTCT+GGG 0.517976 1_3:-66345245 None:intergenic
AATGTGGGTGATTGTTTCCA+TGG 0.524862 1_3:-66343215 None:intergenic
GAGCTTGAGAGGGTTTGGAT+TGG 0.531093 1_3:-66343246 None:intergenic
TAAAGTTCTGACCAACCCCT+TGG 0.532779 1_3:-66345269 None:intergenic
GAGAGGGTTTGGATTGGTGA+AGG 0.539245 1_3:-66343240 None:intergenic
GAGGGAGGTTTGAGTTGTCA+TGG 0.540329 1_3:-66343144 None:intergenic
TGGATTGGTGAAGGACAATG+TGG 0.545639 1_3:-66343231 None:intergenic
AAAGTGAACCCTGGTCGCCA+AGG 0.548177 1_3:+66345252 Msa0134760:CDS
GTTTCCATGGTACAGAGATA+CGG 0.551001 1_3:-66343202 None:intergenic
CACATAAAATTCCTCAACTT+GGG 0.551301 1_3:-66343400 None:intergenic
GGAGTGTCTGGGACTAACTC+AGG 0.553809 1_3:-66343333 None:intergenic
TGTCTGGGACTAACTCAGGT+GGG 0.554597 1_3:-66343329 None:intergenic
TTGAAATTGTGAGCTTGAGA+GGG 0.558382 1_3:-66343256 None:intergenic
GGTTTGGGACCAGAGAGAGG+AGG 0.559759 1_3:-66343173 None:intergenic
AAGTGAACCCTGGTCGCCAA+GGG 0.562644 1_3:+66345253 Msa0134760:CDS
ATTGGGACCTTCCCTCATGA+TGG 0.564788 1_3:-66343478 None:intergenic
GTGTCTGGGACTAACTCAGG+TGG 0.570065 1_3:-66343330 None:intergenic
TTTATGTAAGGCCCAAGTTG+AGG 0.578463 1_3:+66343389 Msa0134760:CDS
AGTTCAATACTTGCATCCTA+AGG 0.578655 1_3:+66345212 Msa0134760:intron
GACCAACCCCTTGGCGACCA+GGG 0.583738 1_3:-66345260 None:intergenic
CAATACTTGCATCCTAAGGA+TGG 0.585635 1_3:+66345216 Msa0134760:CDS
CTGGTGGTGCAGCCATCATG+AGG 0.591206 1_3:+66343466 Msa0134760:CDS
CCTATAGAGGTTAAGTTCAG+TGG 0.595489 1_3:+66345315 Msa0134760:CDS
TTAGGTTTGGGACCAGAGAG+AGG 0.606251 1_3:-66343176 None:intergenic
CTGCCACTGAAAATTGGGGA+GGG 0.607497 1_3:-66343354 None:intergenic
GTCTGGGACTAACTCAGGTG+GGG 0.609250 1_3:-66343328 None:intergenic
TTTGGGACCAGAGAGAGGAG+GGG 0.614499 1_3:-66343171 None:intergenic
AGTGCTGCCACTGAAAATTG+GGG 0.629529 1_3:-66343358 None:intergenic
GGTGCAGCCATCATGAGGGA+AGG 0.635464 1_3:+66343471 Msa0134760:CDS
AAATTGGGGAGGGAGTGTCT+GGG 0.645471 1_3:-66343344 None:intergenic
ATGATGGCTGCACCACCAGT+AGG 0.647307 1_3:-66343462 None:intergenic
GCTGCCACTGAAAATTGGGG+AGG 0.656201 1_3:-66343355 None:intergenic
ATCTTTGAAATGCCTACTGG+TGG 0.664160 1_3:+66343450 Msa0134760:CDS
TGGTGGTGCAGCCATCATGA+GGG 0.675901 1_3:+66343467 Msa0134760:CDS
TACCCAGAGAAAGTGAACCC+TGG 0.676997 1_3:+66345243 Msa0134760:CDS
ATGACCGTATCTCTGTACCA+TGG 0.695290 1_3:+66343198 Msa0134760:CDS
AGTGAACCCTGGTCGCCAAG+GGG 0.697482 1_3:+66345254 Msa0134760:CDS
GGATTGGTGAAGGACAATGT+GGG 0.717553 1_3:-66343230 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTTTTTTTTTAAAGA+TGG + chr1_3:66343767-66343786 Msa0134760:intron 10.0%
!!! ACTTGATTTTTTTTTTTAAA+TGG + chr1_3:66343853-66343872 Msa0134760:intron 10.0%
!!! GTTTTTTTTTTTTTTAAAGA+TGG + chr1_3:66343767-66343786 Msa0134760:intron 10.0%
!!! ACTTGATTTTTTTTTTTAAA+TGG + chr1_3:66343853-66343872 Msa0134760:intron 10.0%
!!! AAAAAACAGAATTTTAGAAT+TGG - chr1_3:66343754-66343773 None:intergenic 15.0%
!!! AATGAAATTTTTTGATAGAA+AGG + chr1_3:66344844-66344863 Msa0134760:intron 15.0%
!!! AAAAAACAGAATTTTAGAAT+TGG - chr1_3:66343754-66343773 None:intergenic 15.0%
!!! AATGAAATTTTTTGATAGAA+AGG + chr1_3:66344844-66344863 Msa0134760:intron 15.0%
!!! ATTTCAAAGATTTGTTCTTT+TGG - chr1_3:66343441-66343460 None:intergenic 20.0%
!! TTCTAGTAAATTATGTACAA+TGG - chr1_3:66344404-66344423 None:intergenic 20.0%
!! ATTATTCCTAGGAATAAATT+TGG - chr1_3:66344533-66344552 None:intergenic 20.0%
!! GTTTAACATTATAATATTCC+TGG + chr1_3:66344610-66344629 Msa0134760:intron 20.0%
!! AAAAAATTTCCCAAAGAAAA+GGG - chr1_3:66344688-66344707 None:intergenic 20.0%
!! AAAAAAATTTCCCAAAGAAA+AGG - chr1_3:66344689-66344708 None:intergenic 20.0%
!!! AGTTTACTAAATTTTATTCC+CGG - chr1_3:66344734-66344753 None:intergenic 20.0%
!!! ATTTTTTTATGCATGAAACA+AGG + chr1_3:66344879-66344898 Msa0134760:intron 20.0%
!! ATATATATGAAAGAGAGAAA+TGG + chr1_3:66345003-66345022 Msa0134760:intron 20.0%
!! ACTACATATACATATATTGA+TGG - chr1_3:66345062-66345081 None:intergenic 20.0%
!!! ATTTCAAAGATTTGTTCTTT+TGG - chr1_3:66343441-66343460 None:intergenic 20.0%
!! TTCTAGTAAATTATGTACAA+TGG - chr1_3:66344404-66344423 None:intergenic 20.0%
!! ATTATTCCTAGGAATAAATT+TGG - chr1_3:66344533-66344552 None:intergenic 20.0%
!! GTTTAACATTATAATATTCC+TGG + chr1_3:66344610-66344629 Msa0134760:intron 20.0%
!! AAAAAATTTCCCAAAGAAAA+GGG - chr1_3:66344688-66344707 None:intergenic 20.0%
!! AAAAAAATTTCCCAAAGAAA+AGG - chr1_3:66344689-66344708 None:intergenic 20.0%
!!! AGTTTACTAAATTTTATTCC+CGG - chr1_3:66344734-66344753 None:intergenic 20.0%
!!! ATTTTTTTATGCATGAAACA+AGG + chr1_3:66344879-66344898 Msa0134760:intron 20.0%
!! ATATATATGAAAGAGAGAAA+TGG + chr1_3:66345003-66345022 Msa0134760:intron 20.0%
!! ACTACATATACATATATTGA+TGG - chr1_3:66345062-66345081 None:intergenic 20.0%
!! AATGATTTTCTCATTTGACA+AGG + chr1_3:66343623-66343642 Msa0134760:intron 25.0%
!! ATGATTTTCTCATTTGACAA+GGG + chr1_3:66343624-66343643 Msa0134760:intron 25.0%
!! TAGGAGATACTATTTTCAAA+TGG - chr1_3:66343654-66343673 None:intergenic 25.0%
!! AAGTGATGGAGAAAAAAATT+AGG - chr1_3:66343673-66343692 None:intergenic 25.0%
!!! TAATTTTTTTCTCCATCACT+TGG + chr1_3:66343672-66343691 Msa0134760:intron 25.0%
!!! CAGAATTTTAGAATTGGATT+TGG - chr1_3:66343748-66343767 None:intergenic 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr1_3:66344115-66344134 Msa0134760:intron 25.0%
!! TTTTCTAATGGTTTCTCTAA+TGG - chr1_3:66344250-66344269 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr1_3:66344257-66344276 Msa0134760:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG - chr1_3:66344297-66344316 None:intergenic 25.0%
!! TGGTTTTTGATAGAACATTA+TGG + chr1_3:66344301-66344320 Msa0134760:intron 25.0%
! TCATTCTTATCTCTCTAATA+GGG - chr1_3:66344481-66344500 None:intergenic 25.0%
! TTCATTCTTATCTCTCTAAT+AGG - chr1_3:66344482-66344501 None:intergenic 25.0%
! AGTTTACCAAATTTATTCCT+AGG + chr1_3:66344524-66344543 Msa0134760:intron 25.0%
!!! ACATCTTTTTTCTAATACCT+TGG - chr1_3:66344588-66344607 None:intergenic 25.0%
!!! TTCATATTTTTATGGTTTCC+AGG - chr1_3:66344631-66344650 None:intergenic 25.0%
!! AATGATTTTCTCATTTGACA+AGG + chr1_3:66343623-66343642 Msa0134760:intron 25.0%
!! ATGATTTTCTCATTTGACAA+GGG + chr1_3:66343624-66343643 Msa0134760:intron 25.0%
!! TAGGAGATACTATTTTCAAA+TGG - chr1_3:66343654-66343673 None:intergenic 25.0%
!! AAGTGATGGAGAAAAAAATT+AGG - chr1_3:66343673-66343692 None:intergenic 25.0%
!!! TAATTTTTTTCTCCATCACT+TGG + chr1_3:66343672-66343691 Msa0134760:intron 25.0%
!!! CAGAATTTTAGAATTGGATT+TGG - chr1_3:66343748-66343767 None:intergenic 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr1_3:66344115-66344134 Msa0134760:intron 25.0%
!! TTTTCTAATGGTTTCTCTAA+TGG - chr1_3:66344250-66344269 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr1_3:66344257-66344276 Msa0134760:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG - chr1_3:66344297-66344316 None:intergenic 25.0%
!! TGGTTTTTGATAGAACATTA+TGG + chr1_3:66344301-66344320 Msa0134760:intron 25.0%
! TCATTCTTATCTCTCTAATA+GGG - chr1_3:66344481-66344500 None:intergenic 25.0%
! TTCATTCTTATCTCTCTAAT+AGG - chr1_3:66344482-66344501 None:intergenic 25.0%
! AGTTTACCAAATTTATTCCT+AGG + chr1_3:66344524-66344543 Msa0134760:intron 25.0%
!!! ACATCTTTTTTCTAATACCT+TGG - chr1_3:66344588-66344607 None:intergenic 25.0%
!!! TTCATATTTTTATGGTTTCC+AGG - chr1_3:66344631-66344650 None:intergenic 25.0%
CACATAAAATTCCTCAACTT+GGG - chr1_3:66343403-66343422 None:intergenic 30.0%
TCACATAAAATTCCTCAACT+TGG - chr1_3:66343404-66343423 None:intergenic 30.0%
! AGGAATTTTATGTGATCACA+TGG + chr1_3:66343409-66343428 Msa0134760:CDS 30.0%
! GGAATTTTATGTGATCACAT+GGG + chr1_3:66343410-66343429 Msa0134760:CDS 30.0%
AAATTACCACTTAAGCTGAA+AGG + chr1_3:66343906-66343925 Msa0134760:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr1_3:66344111-66344130 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG - chr1_3:66344181-66344200 None:intergenic 30.0%
AAGAAGAGTAGATCAAATGA+AGG + chr1_3:66344185-66344204 Msa0134760:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG - chr1_3:66344240-66344259 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - chr1_3:66344262-66344281 None:intergenic 30.0%
AGAGATAAGAATGAAACACT+AGG + chr1_3:66344487-66344506 Msa0134760:intron 30.0%
GAGATAAGAATGAAACACTA+GGG + chr1_3:66344488-66344507 Msa0134760:intron 30.0%
TTCCTAGGAATAATATTCCT+TGG + chr1_3:66344539-66344558 Msa0134760:intron 30.0%
TTCCAAGGAATATTATTCCT+AGG - chr1_3:66344544-66344563 None:intergenic 30.0%
TATTCCTTGGAACATAAAGA+TGG + chr1_3:66344552-66344571 Msa0134760:intron 30.0%
ATTCCTTGGAACATAAAGAT+GGG + chr1_3:66344553-66344572 Msa0134760:intron 30.0%
AAGATGGGAATATTATTCCA+AGG + chr1_3:66344568-66344587 Msa0134760:intron 30.0%
! TTTATTCTCACCCTTTTCTT+TGG + chr1_3:66344675-66344694 Msa0134760:intron 30.0%
! TTATTCTCACCCTTTTCTTT+GGG + chr1_3:66344676-66344695 Msa0134760:intron 30.0%
! ATTCCCAGAAACATTTTTAC+CGG + chr1_3:66344712-66344731 Msa0134760:intron 30.0%
AGTAAACTTGTGACAAACAT+AGG + chr1_3:66344746-66344765 Msa0134760:intron 30.0%
!!! ATTCCTATCGTTTTATTTCC+AGG + chr1_3:66344776-66344795 Msa0134760:intron 30.0%
ATTCCTGGAAATAAAACGAT+AGG - chr1_3:66344782-66344801 None:intergenic 30.0%
AAGTTATCTTCGTATATTCC+TGG - chr1_3:66344797-66344816 None:intergenic 30.0%
ATTTCATTCTCCTTCTCTTA+GGG - chr1_3:66344832-66344851 None:intergenic 30.0%
AATTTCATTCTCCTTCTCTT+AGG - chr1_3:66344833-66344852 None:intergenic 30.0%
!!! TTTTGATAGAAAGGTTGATG+TGG + chr1_3:66344853-66344872 Msa0134760:intron 30.0%
ATATGAAAGAGAGAAATGGT+TGG + chr1_3:66345007-66345026 Msa0134760:intron 30.0%
TGTATATATGAAAGTAGTGC+AGG + chr1_3:66345083-66345102 Msa0134760:intron 30.0%
TAAGAATGTTAGTCCTATAG+AGG + chr1_3:66345302-66345321 Msa0134760:CDS 30.0%
CACATAAAATTCCTCAACTT+GGG - chr1_3:66343403-66343422 None:intergenic 30.0%
TCACATAAAATTCCTCAACT+TGG - chr1_3:66343404-66343423 None:intergenic 30.0%
! AGGAATTTTATGTGATCACA+TGG + chr1_3:66343409-66343428 Msa0134760:CDS 30.0%
! GGAATTTTATGTGATCACAT+GGG + chr1_3:66343410-66343429 Msa0134760:CDS 30.0%
AAATTACCACTTAAGCTGAA+AGG + chr1_3:66343906-66343925 Msa0134760:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr1_3:66344111-66344130 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG - chr1_3:66344181-66344200 None:intergenic 30.0%
AAGAAGAGTAGATCAAATGA+AGG + chr1_3:66344185-66344204 Msa0134760:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG - chr1_3:66344240-66344259 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - chr1_3:66344262-66344281 None:intergenic 30.0%
AGAGATAAGAATGAAACACT+AGG + chr1_3:66344487-66344506 Msa0134760:intron 30.0%
GAGATAAGAATGAAACACTA+GGG + chr1_3:66344488-66344507 Msa0134760:intron 30.0%
TTCCTAGGAATAATATTCCT+TGG + chr1_3:66344539-66344558 Msa0134760:intron 30.0%
TTCCAAGGAATATTATTCCT+AGG - chr1_3:66344544-66344563 None:intergenic 30.0%
TATTCCTTGGAACATAAAGA+TGG + chr1_3:66344552-66344571 Msa0134760:intron 30.0%
ATTCCTTGGAACATAAAGAT+GGG + chr1_3:66344553-66344572 Msa0134760:intron 30.0%
AAGATGGGAATATTATTCCA+AGG + chr1_3:66344568-66344587 Msa0134760:intron 30.0%
! TTTATTCTCACCCTTTTCTT+TGG + chr1_3:66344675-66344694 Msa0134760:intron 30.0%
! TTATTCTCACCCTTTTCTTT+GGG + chr1_3:66344676-66344695 Msa0134760:intron 30.0%
! ATTCCCAGAAACATTTTTAC+CGG + chr1_3:66344712-66344731 Msa0134760:intron 30.0%
AGTAAACTTGTGACAAACAT+AGG + chr1_3:66344746-66344765 Msa0134760:intron 30.0%
!!! ATTCCTATCGTTTTATTTCC+AGG + chr1_3:66344776-66344795 Msa0134760:intron 30.0%
ATTCCTGGAAATAAAACGAT+AGG - chr1_3:66344782-66344801 None:intergenic 30.0%
AAGTTATCTTCGTATATTCC+TGG - chr1_3:66344797-66344816 None:intergenic 30.0%
ATTTCATTCTCCTTCTCTTA+GGG - chr1_3:66344832-66344851 None:intergenic 30.0%
AATTTCATTCTCCTTCTCTT+AGG - chr1_3:66344833-66344852 None:intergenic 30.0%
!!! TTTTGATAGAAAGGTTGATG+TGG + chr1_3:66344853-66344872 Msa0134760:intron 30.0%
ATATGAAAGAGAGAAATGGT+TGG + chr1_3:66345007-66345026 Msa0134760:intron 30.0%
TGTATATATGAAAGTAGTGC+AGG + chr1_3:66345083-66345102 Msa0134760:intron 30.0%
TAAGAATGTTAGTCCTATAG+AGG + chr1_3:66345302-66345321 Msa0134760:CDS 30.0%
TTGAAATTGTGAGCTTGAGA+GGG - chr1_3:66343259-66343278 None:intergenic 35.0%
!! CAAATCTTTGAAATGCCTAC+TGG + chr1_3:66343447-66343466 Msa0134760:CDS 35.0%
CTTGCTAACTTGAGAAGATT+GGG - chr1_3:66343498-66343517 None:intergenic 35.0%
AGCAAGGAAAGAACAATGTT+TGG + chr1_3:66343512-66343531 Msa0134760:intron 35.0%
!! AAAGAACAATGTTTGGCTCT+TGG + chr1_3:66343519-66343538 Msa0134760:intron 35.0%
!!! GAGCCAGAAATTTTAACTAG+TGG + chr1_3:66343553-66343572 Msa0134760:intron 35.0%
CCTCCACTAGTTAAAATTTC+TGG - chr1_3:66343559-66343578 None:intergenic 35.0%
!!! CCAGAAATTTTAACTAGTGG+AGG + chr1_3:66343556-66343575 Msa0134760:intron 35.0%
TCAGAATATCATCCAAGTGA+TGG - chr1_3:66343687-66343706 None:intergenic 35.0%
! GGATGATATTCTGAAAGTCT+TGG + chr1_3:66343693-66343712 Msa0134760:intron 35.0%
TTGGATTTGGAAAAGCTTTC+CGG - chr1_3:66343735-66343754 None:intergenic 35.0%
AACTTTCCTTTCAGCTTAAG+TGG - chr1_3:66343915-66343934 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG + chr1_3:66343919-66343938 Msa0134760:intron 35.0%
AATGACATCATTAGAGAGAG+TGG + chr1_3:66344077-66344096 Msa0134760:intron 35.0%
ATGACATCATTAGAGAGAGT+GGG + chr1_3:66344078-66344097 Msa0134760:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr1_3:66344104-66344123 Msa0134760:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr1_3:66344124-66344143 Msa0134760:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr1_3:66344129-66344148 Msa0134760:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr1_3:66344269-66344288 Msa0134760:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr1_3:66344281-66344300 Msa0134760:intron 35.0%
ATTCCCATCTTTATGTTCCA+AGG - chr1_3:66344559-66344578 None:intergenic 35.0%
! TTCCCAGAAACATTTTTACC+GGG + chr1_3:66344713-66344732 Msa0134760:intron 35.0%
TTCCCGGTAAAAATGTTTCT+GGG - chr1_3:66344718-66344737 None:intergenic 35.0%
ATTCCCGGTAAAAATGTTTC+TGG - chr1_3:66344719-66344738 None:intergenic 35.0%
TATGCATGAAACAAGGATGA+AGG + chr1_3:66344886-66344905 Msa0134760:intron 35.0%
ATGCATGAAACAAGGATGAA+GGG + chr1_3:66344887-66344906 Msa0134760:intron 35.0%
GATGGTTGTGTGTGATATAT+GGG + chr1_3:66344954-66344973 Msa0134760:intron 35.0%
ATGGTTGTGTGTGATATATG+GGG + chr1_3:66344955-66344974 Msa0134760:intron 35.0%
!! AATGGTTGGTTTCGTCATAA+TGG + chr1_3:66345021-66345040 Msa0134760:intron 35.0%
TGGGAAACACTCTATAGAAT+TGG - chr1_3:66345185-66345204 None:intergenic 35.0%
! TTCTATAGAGTGTTTCCCAA+TGG + chr1_3:66345186-66345205 Msa0134760:intron 35.0%
! TCTATAGAGTGTTTCCCAAT+GGG + chr1_3:66345187-66345206 Msa0134760:intron 35.0%
!! AAGTATTGAACTTCCCCATT+GGG - chr1_3:66345204-66345223 None:intergenic 35.0%
AGTTCAATACTTGCATCCTA+AGG + chr1_3:66345212-66345231 Msa0134760:intron 35.0%
!! GGTCAGAACTTTAGAACTAT+TGG + chr1_3:66345279-66345298 Msa0134760:CDS 35.0%
TTGAAATTGTGAGCTTGAGA+GGG - chr1_3:66343259-66343278 None:intergenic 35.0%
!! CAAATCTTTGAAATGCCTAC+TGG + chr1_3:66343447-66343466 Msa0134760:CDS 35.0%
CTTGCTAACTTGAGAAGATT+GGG - chr1_3:66343498-66343517 None:intergenic 35.0%
AGCAAGGAAAGAACAATGTT+TGG + chr1_3:66343512-66343531 Msa0134760:intron 35.0%
!! AAAGAACAATGTTTGGCTCT+TGG + chr1_3:66343519-66343538 Msa0134760:intron 35.0%
!!! GAGCCAGAAATTTTAACTAG+TGG + chr1_3:66343553-66343572 Msa0134760:intron 35.0%
CCTCCACTAGTTAAAATTTC+TGG - chr1_3:66343559-66343578 None:intergenic 35.0%
!!! CCAGAAATTTTAACTAGTGG+AGG + chr1_3:66343556-66343575 Msa0134760:intron 35.0%
TCAGAATATCATCCAAGTGA+TGG - chr1_3:66343687-66343706 None:intergenic 35.0%
! GGATGATATTCTGAAAGTCT+TGG + chr1_3:66343693-66343712 Msa0134760:intron 35.0%
TTGGATTTGGAAAAGCTTTC+CGG - chr1_3:66343735-66343754 None:intergenic 35.0%
AACTTTCCTTTCAGCTTAAG+TGG - chr1_3:66343915-66343934 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG + chr1_3:66343919-66343938 Msa0134760:intron 35.0%
AATGACATCATTAGAGAGAG+TGG + chr1_3:66344077-66344096 Msa0134760:intron 35.0%
ATGACATCATTAGAGAGAGT+GGG + chr1_3:66344078-66344097 Msa0134760:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr1_3:66344104-66344123 Msa0134760:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr1_3:66344124-66344143 Msa0134760:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr1_3:66344129-66344148 Msa0134760:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr1_3:66344269-66344288 Msa0134760:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr1_3:66344281-66344300 Msa0134760:intron 35.0%
ATTCCCATCTTTATGTTCCA+AGG - chr1_3:66344559-66344578 None:intergenic 35.0%
! TTCCCAGAAACATTTTTACC+GGG + chr1_3:66344713-66344732 Msa0134760:intron 35.0%
TTCCCGGTAAAAATGTTTCT+GGG - chr1_3:66344718-66344737 None:intergenic 35.0%
ATTCCCGGTAAAAATGTTTC+TGG - chr1_3:66344719-66344738 None:intergenic 35.0%
TATGCATGAAACAAGGATGA+AGG + chr1_3:66344886-66344905 Msa0134760:intron 35.0%
ATGCATGAAACAAGGATGAA+GGG + chr1_3:66344887-66344906 Msa0134760:intron 35.0%
GATGGTTGTGTGTGATATAT+GGG + chr1_3:66344954-66344973 Msa0134760:intron 35.0%
ATGGTTGTGTGTGATATATG+GGG + chr1_3:66344955-66344974 Msa0134760:intron 35.0%
!! AATGGTTGGTTTCGTCATAA+TGG + chr1_3:66345021-66345040 Msa0134760:intron 35.0%
TGGGAAACACTCTATAGAAT+TGG - chr1_3:66345185-66345204 None:intergenic 35.0%
! TTCTATAGAGTGTTTCCCAA+TGG + chr1_3:66345186-66345205 Msa0134760:intron 35.0%
! TCTATAGAGTGTTTCCCAAT+GGG + chr1_3:66345187-66345206 Msa0134760:intron 35.0%
!! AAGTATTGAACTTCCCCATT+GGG - chr1_3:66345204-66345223 None:intergenic 35.0%
AGTTCAATACTTGCATCCTA+AGG + chr1_3:66345212-66345231 Msa0134760:intron 35.0%
!! GGTCAGAACTTTAGAACTAT+TGG + chr1_3:66345279-66345298 Msa0134760:CDS 35.0%
GAGATACGGTCATTAGGTTT+GGG - chr1_3:66343191-66343210 None:intergenic 40.0%
AGAGATACGGTCATTAGGTT+TGG - chr1_3:66343192-66343211 None:intergenic 40.0%
GTTTCCATGGTACAGAGATA+CGG - chr1_3:66343205-66343224 None:intergenic 40.0%
AATGTGGGTGATTGTTTCCA+TGG - chr1_3:66343218-66343237 None:intergenic 40.0%
CTTGAAATTGTGAGCTTGAG+AGG - chr1_3:66343260-66343279 None:intergenic 40.0%
CAACTTGGGCCTTACATAAA+AGG - chr1_3:66343389-66343408 None:intergenic 40.0%
TTTATGTAAGGCCCAAGTTG+AGG + chr1_3:66343389-66343408 Msa0134760:CDS 40.0%
!! ATCTTTGAAATGCCTACTGG+TGG + chr1_3:66343450-66343469 Msa0134760:CDS 40.0%
CCTTGCTAACTTGAGAAGAT+TGG - chr1_3:66343499-66343518 None:intergenic 40.0%
CCAATCTTCTCAAGTTAGCA+AGG + chr1_3:66343496-66343515 Msa0134760:intron 40.0%
AAAAGCTTTCCGGTGATCAT+GGG - chr1_3:66343725-66343744 None:intergenic 40.0%
CCTCAAACACTTGATGAATG+TGG - chr1_3:66343809-66343828 None:intergenic 40.0%
CCACATTCATCAAGTGTTTG+AGG + chr1_3:66343806-66343825 Msa0134760:intron 40.0%
CTTATCGCACAAAACACATG+AGG - chr1_3:66343886-66343905 None:intergenic 40.0%
AGACTAGACAGGATAGGATT+AGG + chr1_3:66344054-66344073 Msa0134760:intron 40.0%
TGACATCATTAGAGAGAGTG+GGG + chr1_3:66344079-66344098 Msa0134760:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG - chr1_3:66344172-66344191 None:intergenic 40.0%
AGATCAAATGAAGGAGAGTC+AGG + chr1_3:66344194-66344213 Msa0134760:intron 40.0%
AAGGAGAGTCAGGTTAAAAG+AGG + chr1_3:66344204-66344223 Msa0134760:intron 40.0%
!! AACAAAAGCACCCTAAGAGA+AGG + chr1_3:66344819-66344838 Msa0134760:intron 40.0%
AGAAGAGAGAGAATTTCGCA+TGG + chr1_3:66344927-66344946 Msa0134760:intron 40.0%
GAAGAGAGAGAATTTCGCAT+GGG + chr1_3:66344928-66344947 Msa0134760:intron 40.0%
GGATGGTTGTGTGTGATATA+TGG + chr1_3:66344953-66344972 Msa0134760:intron 40.0%
TGGTTGTGTGTGATATATGG+GGG + chr1_3:66344956-66344975 Msa0134760:intron 40.0%
TATATGAAAGTAGTGCAGGC+AGG + chr1_3:66345087-66345106 Msa0134760:intron 40.0%
! CTATAGAGTGTTTCCCAATG+GGG + chr1_3:66345188-66345207 Msa0134760:intron 40.0%
!! CAAGTATTGAACTTCCCCAT+TGG - chr1_3:66345205-66345224 None:intergenic 40.0%
CAATACTTGCATCCTAAGGA+TGG + chr1_3:66345216-66345235 Msa0134760:CDS 40.0%
CCACTGAACTTAACCTCTAT+AGG - chr1_3:66345318-66345337 None:intergenic 40.0%
CCTATAGAGGTTAAGTTCAG+TGG + chr1_3:66345315-66345334 Msa0134760:CDS 40.0%
GAGATACGGTCATTAGGTTT+GGG - chr1_3:66343191-66343210 None:intergenic 40.0%
AGAGATACGGTCATTAGGTT+TGG - chr1_3:66343192-66343211 None:intergenic 40.0%
GTTTCCATGGTACAGAGATA+CGG - chr1_3:66343205-66343224 None:intergenic 40.0%
AATGTGGGTGATTGTTTCCA+TGG - chr1_3:66343218-66343237 None:intergenic 40.0%
CTTGAAATTGTGAGCTTGAG+AGG - chr1_3:66343260-66343279 None:intergenic 40.0%
CAACTTGGGCCTTACATAAA+AGG - chr1_3:66343389-66343408 None:intergenic 40.0%
TTTATGTAAGGCCCAAGTTG+AGG + chr1_3:66343389-66343408 Msa0134760:CDS 40.0%
!! ATCTTTGAAATGCCTACTGG+TGG + chr1_3:66343450-66343469 Msa0134760:CDS 40.0%
CCTTGCTAACTTGAGAAGAT+TGG - chr1_3:66343499-66343518 None:intergenic 40.0%
CCAATCTTCTCAAGTTAGCA+AGG + chr1_3:66343496-66343515 Msa0134760:intron 40.0%
AAAAGCTTTCCGGTGATCAT+GGG - chr1_3:66343725-66343744 None:intergenic 40.0%
CCTCAAACACTTGATGAATG+TGG - chr1_3:66343809-66343828 None:intergenic 40.0%
CCACATTCATCAAGTGTTTG+AGG + chr1_3:66343806-66343825 Msa0134760:intron 40.0%
CTTATCGCACAAAACACATG+AGG - chr1_3:66343886-66343905 None:intergenic 40.0%
AGACTAGACAGGATAGGATT+AGG + chr1_3:66344054-66344073 Msa0134760:intron 40.0%
TGACATCATTAGAGAGAGTG+GGG + chr1_3:66344079-66344098 Msa0134760:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG - chr1_3:66344172-66344191 None:intergenic 40.0%
AGATCAAATGAAGGAGAGTC+AGG + chr1_3:66344194-66344213 Msa0134760:intron 40.0%
AAGGAGAGTCAGGTTAAAAG+AGG + chr1_3:66344204-66344223 Msa0134760:intron 40.0%
!! AACAAAAGCACCCTAAGAGA+AGG + chr1_3:66344819-66344838 Msa0134760:intron 40.0%
AGAAGAGAGAGAATTTCGCA+TGG + chr1_3:66344927-66344946 Msa0134760:intron 40.0%
GAAGAGAGAGAATTTCGCAT+GGG + chr1_3:66344928-66344947 Msa0134760:intron 40.0%
GGATGGTTGTGTGTGATATA+TGG + chr1_3:66344953-66344972 Msa0134760:intron 40.0%
TGGTTGTGTGTGATATATGG+GGG + chr1_3:66344956-66344975 Msa0134760:intron 40.0%
TATATGAAAGTAGTGCAGGC+AGG + chr1_3:66345087-66345106 Msa0134760:intron 40.0%
! CTATAGAGTGTTTCCCAATG+GGG + chr1_3:66345188-66345207 Msa0134760:intron 40.0%
!! CAAGTATTGAACTTCCCCAT+TGG - chr1_3:66345205-66345224 None:intergenic 40.0%
CAATACTTGCATCCTAAGGA+TGG + chr1_3:66345216-66345235 Msa0134760:CDS 40.0%
CCACTGAACTTAACCTCTAT+AGG - chr1_3:66345318-66345337 None:intergenic 40.0%
CCTATAGAGGTTAAGTTCAG+TGG + chr1_3:66345315-66345334 Msa0134760:CDS 40.0%
GGTACAGAGATACGGTCATT+AGG - chr1_3:66343197-66343216 None:intergenic 45.0%
ATGACCGTATCTCTGTACCA+TGG + chr1_3:66343198-66343217 Msa0134760:CDS 45.0%
! GGATTGGTGAAGGACAATGT+GGG - chr1_3:66343233-66343252 None:intergenic 45.0%
!! TGGATTGGTGAAGGACAATG+TGG - chr1_3:66343234-66343253 None:intergenic 45.0%
ATTGTGAGCTTGAGAGGGTT+TGG - chr1_3:66343254-66343273 None:intergenic 45.0%
AGTGCTGCCACTGAAAATTG+GGG - chr1_3:66343361-66343380 None:intergenic 45.0%
CAGTGCTGCCACTGAAAATT+GGG - chr1_3:66343362-66343381 None:intergenic 45.0%
! CACTGGAGGCCTTTTATGTA+AGG + chr1_3:66343377-66343396 Msa0134760:CDS 45.0%
!! AAAATTTCTGGCTCCGCTAC+TGG - chr1_3:66343547-66343566 None:intergenic 45.0%
GAAAAGCTTTCCGGTGATCA+TGG - chr1_3:66343726-66343745 None:intergenic 45.0%
ACCGGCAATGATGTATGGTA+CGG + chr1_3:66343953-66343972 Msa0134760:intron 45.0%
TCCGTACCATACATCATTGC+CGG - chr1_3:66343957-66343976 None:intergenic 45.0%
TGATGTATGGTACGGAGTGT+TGG + chr1_3:66343961-66343980 Msa0134760:intron 45.0%
! GATGTATGGTACGGAGTGTT+GGG + chr1_3:66343962-66343981 Msa0134760:intron 45.0%
CGCTTACTTTACTCTCGTGT+TGG - chr1_3:66343998-66344017 None:intergenic 45.0%
AGGATGTTGTGTTGGATGAG+TGG + chr1_3:66344029-66344048 Msa0134760:intron 45.0%
GATGAGTGGTAAGACTAGAC+AGG + chr1_3:66344043-66344062 Msa0134760:intron 45.0%
GTGGTAAGACTAGACAGGAT+AGG + chr1_3:66344048-66344067 Msa0134760:intron 45.0%
GACATCATTAGAGAGAGTGG+GGG + chr1_3:66344080-66344099 Msa0134760:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG - chr1_3:66344171-66344190 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr1_3:66344350-66344369 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr1_3:66344351-66344370 None:intergenic 45.0%
AGAGAGAATTTCGCATGGGT+GGG + chr1_3:66344932-66344951 Msa0134760:intron 45.0%
! TAAAGTTCTGACCAACCCCT+TGG - chr1_3:66345272-66345291 None:intergenic 45.0%
GGTACAGAGATACGGTCATT+AGG - chr1_3:66343197-66343216 None:intergenic 45.0%
ATGACCGTATCTCTGTACCA+TGG + chr1_3:66343198-66343217 Msa0134760:CDS 45.0%
! GGATTGGTGAAGGACAATGT+GGG - chr1_3:66343233-66343252 None:intergenic 45.0%
!! TGGATTGGTGAAGGACAATG+TGG - chr1_3:66343234-66343253 None:intergenic 45.0%
ATTGTGAGCTTGAGAGGGTT+TGG - chr1_3:66343254-66343273 None:intergenic 45.0%
AGTGCTGCCACTGAAAATTG+GGG - chr1_3:66343361-66343380 None:intergenic 45.0%
CAGTGCTGCCACTGAAAATT+GGG - chr1_3:66343362-66343381 None:intergenic 45.0%
! CACTGGAGGCCTTTTATGTA+AGG + chr1_3:66343377-66343396 Msa0134760:CDS 45.0%
!! AAAATTTCTGGCTCCGCTAC+TGG - chr1_3:66343547-66343566 None:intergenic 45.0%
GAAAAGCTTTCCGGTGATCA+TGG - chr1_3:66343726-66343745 None:intergenic 45.0%
ACCGGCAATGATGTATGGTA+CGG + chr1_3:66343953-66343972 Msa0134760:intron 45.0%
TCCGTACCATACATCATTGC+CGG - chr1_3:66343957-66343976 None:intergenic 45.0%
TGATGTATGGTACGGAGTGT+TGG + chr1_3:66343961-66343980 Msa0134760:intron 45.0%
! GATGTATGGTACGGAGTGTT+GGG + chr1_3:66343962-66343981 Msa0134760:intron 45.0%
CGCTTACTTTACTCTCGTGT+TGG - chr1_3:66343998-66344017 None:intergenic 45.0%
AGGATGTTGTGTTGGATGAG+TGG + chr1_3:66344029-66344048 Msa0134760:intron 45.0%
GATGAGTGGTAAGACTAGAC+AGG + chr1_3:66344043-66344062 Msa0134760:intron 45.0%
GTGGTAAGACTAGACAGGAT+AGG + chr1_3:66344048-66344067 Msa0134760:intron 45.0%
GACATCATTAGAGAGAGTGG+GGG + chr1_3:66344080-66344099 Msa0134760:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG - chr1_3:66344171-66344190 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr1_3:66344350-66344369 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr1_3:66344351-66344370 None:intergenic 45.0%
AGAGAGAATTTCGCATGGGT+GGG + chr1_3:66344932-66344951 Msa0134760:intron 45.0%
! TAAAGTTCTGACCAACCCCT+TGG - chr1_3:66345272-66345291 None:intergenic 45.0%
!! TCAATATTTAAAAAAATATA+TGG - chr1_3:66343604-66343623 None:intergenic 5.0%
!!! TATTATAATTCATATTTTTA+TGG - chr1_3:66344639-66344658 None:intergenic 5.0%
!! TCAATATTTAAAAAAATATA+TGG - chr1_3:66343604-66343623 None:intergenic 5.0%
!!! TATTATAATTCATATTTTTA+TGG - chr1_3:66344639-66344658 None:intergenic 5.0%
!! GAGGGAGGTTTGAGTTGTCA+TGG - chr1_3:66343147-66343166 None:intergenic 50.0%
! TTAGGTTTGGGACCAGAGAG+AGG - chr1_3:66343179-66343198 None:intergenic 50.0%
!! GAGAGGGTTTGGATTGGTGA+AGG - chr1_3:66343243-66343262 None:intergenic 50.0%
GAGCTTGAGAGGGTTTGGAT+TGG - chr1_3:66343249-66343268 None:intergenic 50.0%
CATAACAGCAGCTGTTGCTG+AGG + chr1_3:66343286-66343305 Msa0134760:intron 50.0%
!! TTGCTGAGGAAGGCACCAAT+TGG + chr1_3:66343300-66343319 Msa0134760:intron 50.0%
! TGTCTGGGACTAACTCAGGT+GGG - chr1_3:66343332-66343351 None:intergenic 50.0%
!! AAATTGGGGAGGGAGTGTCT+GGG - chr1_3:66343347-66343366 None:intergenic 50.0%
!! AAAATTGGGGAGGGAGTGTC+TGG - chr1_3:66343348-66343367 None:intergenic 50.0%
! ACTCCCTCCCCAATTTTCAG+TGG + chr1_3:66343351-66343370 Msa0134760:CDS 50.0%
CTGCCACTGAAAATTGGGGA+GGG - chr1_3:66343357-66343376 None:intergenic 50.0%
CCAGTGCTGCCACTGAAAAT+TGG - chr1_3:66343363-66343382 None:intergenic 50.0%
! CCAATTTTCAGTGGCAGCAC+TGG + chr1_3:66343360-66343379 Msa0134760:CDS 50.0%
!! ATTTTCAGTGGCAGCACTGG+AGG + chr1_3:66343363-66343382 Msa0134760:CDS 50.0%
ATTGGGACCTTCCCTCATGA+TGG - chr1_3:66343481-66343500 None:intergenic 50.0%
! TTGGCTCTTGGAACCAGTAG+CGG + chr1_3:66343531-66343550 Msa0134760:intron 50.0%
! TTTCCGGTGATCATGGGTTG+AGG - chr1_3:66343719-66343738 None:intergenic 50.0%
GTCAGACCGGCAATGATGTA+TGG + chr1_3:66343948-66343967 Msa0134760:intron 50.0%
! CGAGAGTAAAGTAAGCGTCG+CGG + chr1_3:66344001-66344020 Msa0134760:intron 50.0%
CGGAGATGAGGATGTTGTGT+TGG + chr1_3:66344021-66344040 Msa0134760:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr1_3:66344346-66344365 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr1_3:66344352-66344371 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr1_3:66344349-66344368 Msa0134760:intron 50.0%
GAGAGAGAATTTCGCATGGG+TGG + chr1_3:66344931-66344950 Msa0134760:intron 50.0%
AGAATTTCGCATGGGTGGGA+TGG + chr1_3:66344936-66344955 Msa0134760:intron 50.0%
AGCCACACACAAGGTTGTGT+GGG - chr1_3:66345115-66345134 None:intergenic 50.0%
AACCTAGTTCCAAGCAGTGG+CGG - chr1_3:66345138-66345157 None:intergenic 50.0%
CTCAACCTAGTTCCAAGCAG+TGG - chr1_3:66345141-66345160 None:intergenic 50.0%
CACTGCTTGGAACTAGGTTG+AGG + chr1_3:66345139-66345158 Msa0134760:intron 50.0%
TCTGGGTACACACCATCCTT+AGG - chr1_3:66345231-66345250 None:intergenic 50.0%
TACCCAGAGAAAGTGAACCC+TGG + chr1_3:66345243-66345262 Msa0134760:CDS 50.0%
GACCAGGGTTCACTTTCTCT+GGG - chr1_3:66345248-66345267 None:intergenic 50.0%
!! GAGGGAGGTTTGAGTTGTCA+TGG - chr1_3:66343147-66343166 None:intergenic 50.0%
! TTAGGTTTGGGACCAGAGAG+AGG - chr1_3:66343179-66343198 None:intergenic 50.0%
!! GAGAGGGTTTGGATTGGTGA+AGG - chr1_3:66343243-66343262 None:intergenic 50.0%
GAGCTTGAGAGGGTTTGGAT+TGG - chr1_3:66343249-66343268 None:intergenic 50.0%
CATAACAGCAGCTGTTGCTG+AGG + chr1_3:66343286-66343305 Msa0134760:intron 50.0%
!! TTGCTGAGGAAGGCACCAAT+TGG + chr1_3:66343300-66343319 Msa0134760:intron 50.0%
! TGTCTGGGACTAACTCAGGT+GGG - chr1_3:66343332-66343351 None:intergenic 50.0%
!! AAATTGGGGAGGGAGTGTCT+GGG - chr1_3:66343347-66343366 None:intergenic 50.0%
!! AAAATTGGGGAGGGAGTGTC+TGG - chr1_3:66343348-66343367 None:intergenic 50.0%
! ACTCCCTCCCCAATTTTCAG+TGG + chr1_3:66343351-66343370 Msa0134760:CDS 50.0%
CTGCCACTGAAAATTGGGGA+GGG - chr1_3:66343357-66343376 None:intergenic 50.0%
CCAGTGCTGCCACTGAAAAT+TGG - chr1_3:66343363-66343382 None:intergenic 50.0%
! CCAATTTTCAGTGGCAGCAC+TGG + chr1_3:66343360-66343379 Msa0134760:CDS 50.0%
!! ATTTTCAGTGGCAGCACTGG+AGG + chr1_3:66343363-66343382 Msa0134760:CDS 50.0%
ATTGGGACCTTCCCTCATGA+TGG - chr1_3:66343481-66343500 None:intergenic 50.0%
! TTGGCTCTTGGAACCAGTAG+CGG + chr1_3:66343531-66343550 Msa0134760:intron 50.0%
! TTTCCGGTGATCATGGGTTG+AGG - chr1_3:66343719-66343738 None:intergenic 50.0%
GTCAGACCGGCAATGATGTA+TGG + chr1_3:66343948-66343967 Msa0134760:intron 50.0%
! CGAGAGTAAAGTAAGCGTCG+CGG + chr1_3:66344001-66344020 Msa0134760:intron 50.0%
CGGAGATGAGGATGTTGTGT+TGG + chr1_3:66344021-66344040 Msa0134760:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr1_3:66344346-66344365 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr1_3:66344352-66344371 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr1_3:66344349-66344368 Msa0134760:intron 50.0%
GAGAGAGAATTTCGCATGGG+TGG + chr1_3:66344931-66344950 Msa0134760:intron 50.0%
AGAATTTCGCATGGGTGGGA+TGG + chr1_3:66344936-66344955 Msa0134760:intron 50.0%
AGCCACACACAAGGTTGTGT+GGG - chr1_3:66345115-66345134 None:intergenic 50.0%
AACCTAGTTCCAAGCAGTGG+CGG - chr1_3:66345138-66345157 None:intergenic 50.0%
CTCAACCTAGTTCCAAGCAG+TGG - chr1_3:66345141-66345160 None:intergenic 50.0%
CACTGCTTGGAACTAGGTTG+AGG + chr1_3:66345139-66345158 Msa0134760:intron 50.0%
TCTGGGTACACACCATCCTT+AGG - chr1_3:66345231-66345250 None:intergenic 50.0%
TACCCAGAGAAAGTGAACCC+TGG + chr1_3:66345243-66345262 Msa0134760:CDS 50.0%
GACCAGGGTTCACTTTCTCT+GGG - chr1_3:66345248-66345267 None:intergenic 50.0%
AGAGAGAGGAGGGGTGAAGA+GGG - chr1_3:66343165-66343184 None:intergenic 55.0%
! TTTGGGACCAGAGAGAGGAG+GGG - chr1_3:66343174-66343193 None:intergenic 55.0%
! GTTTGGGACCAGAGAGAGGA+GGG - chr1_3:66343175-66343194 None:intergenic 55.0%
ACAGCAGCTGTTGCTGAGGA+AGG + chr1_3:66343290-66343309 Msa0134760:intron 55.0%
TCAGGTGGGGTGAAGCCAAT+TGG - chr1_3:66343318-66343337 None:intergenic 55.0%
! GTCTGGGACTAACTCAGGTG+GGG - chr1_3:66343331-66343350 None:intergenic 55.0%
! GTGTCTGGGACTAACTCAGG+TGG - chr1_3:66343333-66343352 None:intergenic 55.0%
! GGAGTGTCTGGGACTAACTC+AGG - chr1_3:66343336-66343355 None:intergenic 55.0%
GCTGCCACTGAAAATTGGGG+AGG - chr1_3:66343358-66343377 None:intergenic 55.0%
ATGATGGCTGCACCACCAGT+AGG - chr1_3:66343465-66343484 None:intergenic 55.0%
! TGGTGGTGCAGCCATCATGA+GGG + chr1_3:66343467-66343486 Msa0134760:CDS 55.0%
TGGCCTCAACCCATGATCAC+CGG + chr1_3:66343713-66343732 Msa0134760:intron 55.0%
CTATCGGACAGCAGTCAGAC+CGG + chr1_3:66343935-66343954 Msa0134760:intron 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG + chr1_3:66343965-66343984 Msa0134760:intron 55.0%
! AAGTAAGCGTCGCGGAGATG+AGG + chr1_3:66344009-66344028 Msa0134760:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr1_3:66344338-66344357 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr1_3:66344337-66344356 Msa0134760:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr1_3:66344338-66344357 Msa0134760:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr1_3:66344344-66344363 Msa0134760:intron 55.0%
AGCCCACACAACCTTGTGTG+TGG + chr1_3:66345110-66345129 Msa0134760:intron 55.0%
GAGCCACACACAAGGTTGTG+TGG - chr1_3:66345116-66345135 None:intergenic 55.0%
CGACCAGGGTTCACTTTCTC+TGG - chr1_3:66345249-66345268 None:intergenic 55.0%
AAAGTGAACCCTGGTCGCCA+AGG + chr1_3:66345252-66345271 Msa0134760:CDS 55.0%
AAGTGAACCCTGGTCGCCAA+GGG + chr1_3:66345253-66345272 Msa0134760:CDS 55.0%
AGAGAGAGGAGGGGTGAAGA+GGG - chr1_3:66343165-66343184 None:intergenic 55.0%
! TTTGGGACCAGAGAGAGGAG+GGG - chr1_3:66343174-66343193 None:intergenic 55.0%
! GTTTGGGACCAGAGAGAGGA+GGG - chr1_3:66343175-66343194 None:intergenic 55.0%
ACAGCAGCTGTTGCTGAGGA+AGG + chr1_3:66343290-66343309 Msa0134760:intron 55.0%
TCAGGTGGGGTGAAGCCAAT+TGG - chr1_3:66343318-66343337 None:intergenic 55.0%
! GTCTGGGACTAACTCAGGTG+GGG - chr1_3:66343331-66343350 None:intergenic 55.0%
! GTGTCTGGGACTAACTCAGG+TGG - chr1_3:66343333-66343352 None:intergenic 55.0%
! GGAGTGTCTGGGACTAACTC+AGG - chr1_3:66343336-66343355 None:intergenic 55.0%
GCTGCCACTGAAAATTGGGG+AGG - chr1_3:66343358-66343377 None:intergenic 55.0%
ATGATGGCTGCACCACCAGT+AGG - chr1_3:66343465-66343484 None:intergenic 55.0%
! TGGTGGTGCAGCCATCATGA+GGG + chr1_3:66343467-66343486 Msa0134760:CDS 55.0%
TGGCCTCAACCCATGATCAC+CGG + chr1_3:66343713-66343732 Msa0134760:intron 55.0%
CTATCGGACAGCAGTCAGAC+CGG + chr1_3:66343935-66343954 Msa0134760:intron 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG + chr1_3:66343965-66343984 Msa0134760:intron 55.0%
! AAGTAAGCGTCGCGGAGATG+AGG + chr1_3:66344009-66344028 Msa0134760:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr1_3:66344338-66344357 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr1_3:66344337-66344356 Msa0134760:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr1_3:66344338-66344357 Msa0134760:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr1_3:66344344-66344363 Msa0134760:intron 55.0%
AGCCCACACAACCTTGTGTG+TGG + chr1_3:66345110-66345129 Msa0134760:intron 55.0%
GAGCCACACACAAGGTTGTG+TGG - chr1_3:66345116-66345135 None:intergenic 55.0%
CGACCAGGGTTCACTTTCTC+TGG - chr1_3:66345249-66345268 None:intergenic 55.0%
AAAGTGAACCCTGGTCGCCA+AGG + chr1_3:66345252-66345271 Msa0134760:CDS 55.0%
AAGTGAACCCTGGTCGCCAA+GGG + chr1_3:66345253-66345272 Msa0134760:CDS 55.0%
CAGAGAGAGGAGGGGTGAAG+AGG - chr1_3:66343166-66343185 None:intergenic 60.0%
CTCTTCACCCCTCCTCTCTC+TGG + chr1_3:66343164-66343183 Msa0134760:CDS 60.0%
! GGTTTGGGACCAGAGAGAGG+AGG - chr1_3:66343176-66343195 None:intergenic 60.0%
! CTGGTGGTGCAGCCATCATG+AGG + chr1_3:66343466-66343485 Msa0134760:CDS 60.0%
GGTGCAGCCATCATGAGGGA+AGG + chr1_3:66343471-66343490 Msa0134760:CDS 60.0%
CTCCGCCACTGCTTGGAACT+AGG + chr1_3:66345133-66345152 Msa0134760:intron 60.0%
AGTGAACCCTGGTCGCCAAG+GGG + chr1_3:66345254-66345273 Msa0134760:CDS 60.0%
CAGAGAGAGGAGGGGTGAAG+AGG - chr1_3:66343166-66343185 None:intergenic 60.0%
CTCTTCACCCCTCCTCTCTC+TGG + chr1_3:66343164-66343183 Msa0134760:CDS 60.0%
! GGTTTGGGACCAGAGAGAGG+AGG - chr1_3:66343176-66343195 None:intergenic 60.0%
! CTGGTGGTGCAGCCATCATG+AGG + chr1_3:66343466-66343485 Msa0134760:CDS 60.0%
GGTGCAGCCATCATGAGGGA+AGG + chr1_3:66343471-66343490 Msa0134760:CDS 60.0%
CTCCGCCACTGCTTGGAACT+AGG + chr1_3:66345133-66345152 Msa0134760:intron 60.0%
AGTGAACCCTGGTCGCCAAG+GGG + chr1_3:66345254-66345273 Msa0134760:CDS 60.0%
GAGAGGAGGGGTGAAGAGGG+AGG - chr1_3:66343162-66343181 None:intergenic 65.0%
! CAGTGGCGGAGCCACACACA+AGG - chr1_3:66345124-66345143 None:intergenic 65.0%
TGTGTGGCTCCGCCACTGCT+TGG + chr1_3:66345126-66345145 Msa0134760:intron 65.0%
AACCCTGGTCGCCAAGGGGT+TGG + chr1_3:66345258-66345277 Msa0134760:CDS 65.0%
GACCAACCCCTTGGCGACCA+GGG - chr1_3:66345263-66345282 None:intergenic 65.0%
TGACCAACCCCTTGGCGACC+AGG - chr1_3:66345264-66345283 None:intergenic 65.0%
GAGAGGAGGGGTGAAGAGGG+AGG - chr1_3:66343162-66343181 None:intergenic 65.0%
! CAGTGGCGGAGCCACACACA+AGG - chr1_3:66345124-66345143 None:intergenic 65.0%
TGTGTGGCTCCGCCACTGCT+TGG + chr1_3:66345126-66345145 Msa0134760:intron 65.0%
AACCCTGGTCGCCAAGGGGT+TGG + chr1_3:66345258-66345277 Msa0134760:CDS 65.0%
GACCAACCCCTTGGCGACCA+GGG - chr1_3:66345263-66345282 None:intergenic 65.0%
TGACCAACCCCTTGGCGACC+AGG - chr1_3:66345264-66345283 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 66343140 66345359 66343140 ID=Msa0134760;Name=Msa0134760
chr1_3 mRNA 66343140 66345359 66343140 ID=Msa0134760-mRNA-1;Parent=Msa0134760;Name=Msa0134760-mRNA-1;_AED=0.10;_eAED=0.14;_QI=0|0|0|1|0|0|3|0|161
chr1_3 exon 66343140 66343298 66343140 ID=Msa0134760-mRNA-1:exon:22651;Parent=Msa0134760-mRNA-1
chr1_3 exon 66343312 66343492 66343312 ID=Msa0134760-mRNA-1:exon:22652;Parent=Msa0134760-mRNA-1
chr1_3 exon 66345214 66345359 66345214 ID=Msa0134760-mRNA-1:exon:22653;Parent=Msa0134760-mRNA-1
chr1_3 CDS 66343140 66343298 66343140 ID=Msa0134760-mRNA-1:cds;Parent=Msa0134760-mRNA-1
chr1_3 CDS 66343312 66343492 66343312 ID=Msa0134760-mRNA-1:cds;Parent=Msa0134760-mRNA-1
chr1_3 CDS 66345214 66345359 66345214 ID=Msa0134760-mRNA-1:cds;Parent=Msa0134760-mRNA-1
Gene Sequence

>Msa0134760

ATGGCCATGACAACTCAAACCTCCCTCTTCACCCCTCCTCTCTCTGGTCCCAAACCTAATGACCGTATCTCTGTACCATGGAAACAATCACCCACATTGTCCTTCACCAATCCAAACCCTCTCAAGCTCACAATTTCAAGAAACATCATAACAGCAGCTGCACCAATTGGCTTCACCCCACCTGAGTTAGTCCCAGACACTCCCTCCCCAATTTTCAGTGGCAGCACTGGAGGCCTTTTATGTAAGGCCCAAGTTGAGGAATTTTATGTGATCACATGGGATTCTCCAAAAGAACAAATCTTTGAAATGCCTACTGGTGGTGCAGCCATCATGAGGGAAGTTCAATACTTGCATCCTAAGGATGGTGTGTACCCAGAGAAAGTGAACCCTGGTCGCCAAGGGGTTGGTCAGAACTTTAGAACTATTGGTAAGAATGTTAGTCCTATAGAGGTTAAGTTCAGTGGCAAGCAAGTGTATGAATTGTGA

Protein sequence

>Msa0134760

MAMTTQTSLFTPPLSGPKPNDRISVPWKQSPTLSFTNPNPLKLTISRNIITAAAPIGFTPPELVPDTPSPIFSGSTGGLLCKAQVEEFYVITWDSPKEQIFEMPTGGAAIMREVQYLHPKDGVYPEKVNPGRQGVGQNFRTIGKNVSPIEVKFSGKQVYEL*