Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0134760 | WP_204986703.1 | 63.850 | 213 | 25 | 2 | 1 | 161 | 8 | 220 | 1.35e-81 | 250 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0134760 | sp|P32869|PSAD_CUCSA | 60.096 | 208 | 35 | 4 | 1 | 161 | 1 | 207 | 1.38e-74 | 224 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0134760 | A0A2I4GSF6 | 62.381 | 210 | 30 | 2 | 1 | 161 | 1 | 210 | 1.66e-80 | 246 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0134760 | Msa0418590 | 0.952869 | 9.518047e-111 | -8.615850e-47 |
Msa0134760 | Msa0421790 | 0.804281 | 2.329505e-49 | -8.615850e-47 |
Msa0134760 | Msa0440220 | 0.812213 | 4.746317e-51 | -8.615850e-47 |
Msa0134760 | Msa0467890 | 0.803168 | 3.965814e-49 | -8.615850e-47 |
Msa0134760 | Msa1207280 | 0.801460 | 8.912101e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0134760 | MtrunA17_Chr5g0394361 | 57.870 | 216 | 29 | 3 | 1 | 161 | 1 | 209 | 1.84e-74 | 221 |
Msa0134760 | MtrunA17_Chr1g0205601 | 64.948 | 97 | 20 | 2 | 1 | 90 | 1 | 90 | 4.44e-34 | 115 |
Msa0134760 | MtrunA17_Chr1g0205591 | 93.878 | 49 | 3 | 0 | 113 | 161 | 41 | 89 | 6.60e-27 | 97.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0134760 | AT4G02770.1 | 63.087 | 149 | 17 | 1 | 51 | 161 | 60 | 208 | 2.74e-59 | 183 |
Msa0134760 | AT1G03130.1 | 63.699 | 146 | 15 | 1 | 54 | 161 | 59 | 204 | 5.09e-59 | 182 |
Find 64 sgRNAs with CRISPR-Local
Find 440 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAGTGCTGCCACTGAAAAT+TGG | 0.193952 | 1_3:-66343360 | None:intergenic |
CGACCAGGGTTCACTTTCTC+TGG | 0.220355 | 1_3:-66345246 | None:intergenic |
CAACTTGGGCCTTACATAAA+AGG | 0.267884 | 1_3:-66343386 | None:intergenic |
AAAATTGGGGAGGGAGTGTC+TGG | 0.303697 | 1_3:-66343345 | None:intergenic |
ATTTCAAAGATTTGTTCTTT+TGG | 0.309811 | 1_3:-66343438 | None:intergenic |
CAGTGCTGCCACTGAAAATT+GGG | 0.315756 | 1_3:-66343359 | None:intergenic |
GGTCAGAACTTTAGAACTAT+TGG | 0.337450 | 1_3:+66345279 | Msa0134760:CDS |
ATTGTGAGCTTGAGAGGGTT+TGG | 0.372107 | 1_3:-66343251 | None:intergenic |
AGAGATACGGTCATTAGGTT+TGG | 0.376453 | 1_3:-66343189 | None:intergenic |
CTCTTCACCCCTCCTCTCTC+TGG | 0.385923 | 1_3:+66343164 | Msa0134760:CDS |
GGTACAGAGATACGGTCATT+AGG | 0.394276 | 1_3:-66343194 | None:intergenic |
CCACTGAACTTAACCTCTAT+AGG | 0.417689 | 1_3:-66345315 | None:intergenic |
GAGATACGGTCATTAGGTTT+GGG | 0.426468 | 1_3:-66343188 | None:intergenic |
TCTGGGTACACACCATCCTT+AGG | 0.434810 | 1_3:-66345228 | None:intergenic |
AGAGAGAGGAGGGGTGAAGA+GGG | 0.442080 | 1_3:-66343162 | None:intergenic |
TGACCAACCCCTTGGCGACC+AGG | 0.470301 | 1_3:-66345261 | None:intergenic |
TAAGAATGTTAGTCCTATAG+AGG | 0.473752 | 1_3:+66345302 | Msa0134760:CDS |
TTGCTGAGGAAGGCACCAAT+TGG | 0.475146 | 1_3:+66343300 | Msa0134760:intron |
GTTTGGGACCAGAGAGAGGA+GGG | 0.477785 | 1_3:-66343172 | None:intergenic |
CAGAGAGAGGAGGGGTGAAG+AGG | 0.479426 | 1_3:-66343163 | None:intergenic |
CTTGAAATTGTGAGCTTGAG+AGG | 0.480961 | 1_3:-66343257 | None:intergenic |
CAAATCTTTGAAATGCCTAC+TGG | 0.482126 | 1_3:+66343447 | Msa0134760:CDS |
GAGAGGAGGGGTGAAGAGGG+AGG | 0.499448 | 1_3:-66343159 | None:intergenic |
AACCCTGGTCGCCAAGGGGT+TGG | 0.500962 | 1_3:+66345258 | Msa0134760:CDS |
TCACATAAAATTCCTCAACT+TGG | 0.507482 | 1_3:-66343401 | None:intergenic |
TCAGGTGGGGTGAAGCCAAT+TGG | 0.510396 | 1_3:-66343315 | None:intergenic |
GACCAGGGTTCACTTTCTCT+GGG | 0.517976 | 1_3:-66345245 | None:intergenic |
AATGTGGGTGATTGTTTCCA+TGG | 0.524862 | 1_3:-66343215 | None:intergenic |
GAGCTTGAGAGGGTTTGGAT+TGG | 0.531093 | 1_3:-66343246 | None:intergenic |
TAAAGTTCTGACCAACCCCT+TGG | 0.532779 | 1_3:-66345269 | None:intergenic |
GAGAGGGTTTGGATTGGTGA+AGG | 0.539245 | 1_3:-66343240 | None:intergenic |
GAGGGAGGTTTGAGTTGTCA+TGG | 0.540329 | 1_3:-66343144 | None:intergenic |
TGGATTGGTGAAGGACAATG+TGG | 0.545639 | 1_3:-66343231 | None:intergenic |
AAAGTGAACCCTGGTCGCCA+AGG | 0.548177 | 1_3:+66345252 | Msa0134760:CDS |
GTTTCCATGGTACAGAGATA+CGG | 0.551001 | 1_3:-66343202 | None:intergenic |
CACATAAAATTCCTCAACTT+GGG | 0.551301 | 1_3:-66343400 | None:intergenic |
GGAGTGTCTGGGACTAACTC+AGG | 0.553809 | 1_3:-66343333 | None:intergenic |
TGTCTGGGACTAACTCAGGT+GGG | 0.554597 | 1_3:-66343329 | None:intergenic |
TTGAAATTGTGAGCTTGAGA+GGG | 0.558382 | 1_3:-66343256 | None:intergenic |
GGTTTGGGACCAGAGAGAGG+AGG | 0.559759 | 1_3:-66343173 | None:intergenic |
AAGTGAACCCTGGTCGCCAA+GGG | 0.562644 | 1_3:+66345253 | Msa0134760:CDS |
ATTGGGACCTTCCCTCATGA+TGG | 0.564788 | 1_3:-66343478 | None:intergenic |
GTGTCTGGGACTAACTCAGG+TGG | 0.570065 | 1_3:-66343330 | None:intergenic |
TTTATGTAAGGCCCAAGTTG+AGG | 0.578463 | 1_3:+66343389 | Msa0134760:CDS |
AGTTCAATACTTGCATCCTA+AGG | 0.578655 | 1_3:+66345212 | Msa0134760:intron |
GACCAACCCCTTGGCGACCA+GGG | 0.583738 | 1_3:-66345260 | None:intergenic |
CAATACTTGCATCCTAAGGA+TGG | 0.585635 | 1_3:+66345216 | Msa0134760:CDS |
CTGGTGGTGCAGCCATCATG+AGG | 0.591206 | 1_3:+66343466 | Msa0134760:CDS |
CCTATAGAGGTTAAGTTCAG+TGG | 0.595489 | 1_3:+66345315 | Msa0134760:CDS |
TTAGGTTTGGGACCAGAGAG+AGG | 0.606251 | 1_3:-66343176 | None:intergenic |
CTGCCACTGAAAATTGGGGA+GGG | 0.607497 | 1_3:-66343354 | None:intergenic |
GTCTGGGACTAACTCAGGTG+GGG | 0.609250 | 1_3:-66343328 | None:intergenic |
TTTGGGACCAGAGAGAGGAG+GGG | 0.614499 | 1_3:-66343171 | None:intergenic |
AGTGCTGCCACTGAAAATTG+GGG | 0.629529 | 1_3:-66343358 | None:intergenic |
GGTGCAGCCATCATGAGGGA+AGG | 0.635464 | 1_3:+66343471 | Msa0134760:CDS |
AAATTGGGGAGGGAGTGTCT+GGG | 0.645471 | 1_3:-66343344 | None:intergenic |
ATGATGGCTGCACCACCAGT+AGG | 0.647307 | 1_3:-66343462 | None:intergenic |
GCTGCCACTGAAAATTGGGG+AGG | 0.656201 | 1_3:-66343355 | None:intergenic |
ATCTTTGAAATGCCTACTGG+TGG | 0.664160 | 1_3:+66343450 | Msa0134760:CDS |
TGGTGGTGCAGCCATCATGA+GGG | 0.675901 | 1_3:+66343467 | Msa0134760:CDS |
TACCCAGAGAAAGTGAACCC+TGG | 0.676997 | 1_3:+66345243 | Msa0134760:CDS |
ATGACCGTATCTCTGTACCA+TGG | 0.695290 | 1_3:+66343198 | Msa0134760:CDS |
AGTGAACCCTGGTCGCCAAG+GGG | 0.697482 | 1_3:+66345254 | Msa0134760:CDS |
GGATTGGTGAAGGACAATGT+GGG | 0.717553 | 1_3:-66343230 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GTTTTTTTTTTTTTTAAAGA+TGG | + | chr1_3:66343767-66343786 | Msa0134760:intron | 10.0% |
!!! | ACTTGATTTTTTTTTTTAAA+TGG | + | chr1_3:66343853-66343872 | Msa0134760:intron | 10.0% |
!!! | GTTTTTTTTTTTTTTAAAGA+TGG | + | chr1_3:66343767-66343786 | Msa0134760:intron | 10.0% |
!!! | ACTTGATTTTTTTTTTTAAA+TGG | + | chr1_3:66343853-66343872 | Msa0134760:intron | 10.0% |
!!! | AAAAAACAGAATTTTAGAAT+TGG | - | chr1_3:66343754-66343773 | None:intergenic | 15.0% |
!!! | AATGAAATTTTTTGATAGAA+AGG | + | chr1_3:66344844-66344863 | Msa0134760:intron | 15.0% |
!!! | AAAAAACAGAATTTTAGAAT+TGG | - | chr1_3:66343754-66343773 | None:intergenic | 15.0% |
!!! | AATGAAATTTTTTGATAGAA+AGG | + | chr1_3:66344844-66344863 | Msa0134760:intron | 15.0% |
!!! | ATTTCAAAGATTTGTTCTTT+TGG | - | chr1_3:66343441-66343460 | None:intergenic | 20.0% |
!! | TTCTAGTAAATTATGTACAA+TGG | - | chr1_3:66344404-66344423 | None:intergenic | 20.0% |
!! | ATTATTCCTAGGAATAAATT+TGG | - | chr1_3:66344533-66344552 | None:intergenic | 20.0% |
!! | GTTTAACATTATAATATTCC+TGG | + | chr1_3:66344610-66344629 | Msa0134760:intron | 20.0% |
!! | AAAAAATTTCCCAAAGAAAA+GGG | - | chr1_3:66344688-66344707 | None:intergenic | 20.0% |
!! | AAAAAAATTTCCCAAAGAAA+AGG | - | chr1_3:66344689-66344708 | None:intergenic | 20.0% |
!!! | AGTTTACTAAATTTTATTCC+CGG | - | chr1_3:66344734-66344753 | None:intergenic | 20.0% |
!!! | ATTTTTTTATGCATGAAACA+AGG | + | chr1_3:66344879-66344898 | Msa0134760:intron | 20.0% |
!! | ATATATATGAAAGAGAGAAA+TGG | + | chr1_3:66345003-66345022 | Msa0134760:intron | 20.0% |
!! | ACTACATATACATATATTGA+TGG | - | chr1_3:66345062-66345081 | None:intergenic | 20.0% |
!!! | ATTTCAAAGATTTGTTCTTT+TGG | - | chr1_3:66343441-66343460 | None:intergenic | 20.0% |
!! | TTCTAGTAAATTATGTACAA+TGG | - | chr1_3:66344404-66344423 | None:intergenic | 20.0% |
!! | ATTATTCCTAGGAATAAATT+TGG | - | chr1_3:66344533-66344552 | None:intergenic | 20.0% |
!! | GTTTAACATTATAATATTCC+TGG | + | chr1_3:66344610-66344629 | Msa0134760:intron | 20.0% |
!! | AAAAAATTTCCCAAAGAAAA+GGG | - | chr1_3:66344688-66344707 | None:intergenic | 20.0% |
!! | AAAAAAATTTCCCAAAGAAA+AGG | - | chr1_3:66344689-66344708 | None:intergenic | 20.0% |
!!! | AGTTTACTAAATTTTATTCC+CGG | - | chr1_3:66344734-66344753 | None:intergenic | 20.0% |
!!! | ATTTTTTTATGCATGAAACA+AGG | + | chr1_3:66344879-66344898 | Msa0134760:intron | 20.0% |
!! | ATATATATGAAAGAGAGAAA+TGG | + | chr1_3:66345003-66345022 | Msa0134760:intron | 20.0% |
!! | ACTACATATACATATATTGA+TGG | - | chr1_3:66345062-66345081 | None:intergenic | 20.0% |
!! | AATGATTTTCTCATTTGACA+AGG | + | chr1_3:66343623-66343642 | Msa0134760:intron | 25.0% |
!! | ATGATTTTCTCATTTGACAA+GGG | + | chr1_3:66343624-66343643 | Msa0134760:intron | 25.0% |
!! | TAGGAGATACTATTTTCAAA+TGG | - | chr1_3:66343654-66343673 | None:intergenic | 25.0% |
!! | AAGTGATGGAGAAAAAAATT+AGG | - | chr1_3:66343673-66343692 | None:intergenic | 25.0% |
!!! | TAATTTTTTTCTCCATCACT+TGG | + | chr1_3:66343672-66343691 | Msa0134760:intron | 25.0% |
!!! | CAGAATTTTAGAATTGGATT+TGG | - | chr1_3:66343748-66343767 | None:intergenic | 25.0% |
!!! | TAGAAAAGTTGGTAGAAAAT+AGG | + | chr1_3:66344115-66344134 | Msa0134760:intron | 25.0% |
!! | TTTTCTAATGGTTTCTCTAA+TGG | - | chr1_3:66344250-66344269 | None:intergenic | 25.0% |
! | AACCATTAGAAAAGATTTAG+AGG | + | chr1_3:66344257-66344276 | Msa0134760:intron | 25.0% |
! | GTTCTATCAAAAACCATATT+TGG | - | chr1_3:66344297-66344316 | None:intergenic | 25.0% |
!! | TGGTTTTTGATAGAACATTA+TGG | + | chr1_3:66344301-66344320 | Msa0134760:intron | 25.0% |
! | TCATTCTTATCTCTCTAATA+GGG | - | chr1_3:66344481-66344500 | None:intergenic | 25.0% |
! | TTCATTCTTATCTCTCTAAT+AGG | - | chr1_3:66344482-66344501 | None:intergenic | 25.0% |
! | AGTTTACCAAATTTATTCCT+AGG | + | chr1_3:66344524-66344543 | Msa0134760:intron | 25.0% |
!!! | ACATCTTTTTTCTAATACCT+TGG | - | chr1_3:66344588-66344607 | None:intergenic | 25.0% |
!!! | TTCATATTTTTATGGTTTCC+AGG | - | chr1_3:66344631-66344650 | None:intergenic | 25.0% |
!! | AATGATTTTCTCATTTGACA+AGG | + | chr1_3:66343623-66343642 | Msa0134760:intron | 25.0% |
!! | ATGATTTTCTCATTTGACAA+GGG | + | chr1_3:66343624-66343643 | Msa0134760:intron | 25.0% |
!! | TAGGAGATACTATTTTCAAA+TGG | - | chr1_3:66343654-66343673 | None:intergenic | 25.0% |
!! | AAGTGATGGAGAAAAAAATT+AGG | - | chr1_3:66343673-66343692 | None:intergenic | 25.0% |
!!! | TAATTTTTTTCTCCATCACT+TGG | + | chr1_3:66343672-66343691 | Msa0134760:intron | 25.0% |
!!! | CAGAATTTTAGAATTGGATT+TGG | - | chr1_3:66343748-66343767 | None:intergenic | 25.0% |
!!! | TAGAAAAGTTGGTAGAAAAT+AGG | + | chr1_3:66344115-66344134 | Msa0134760:intron | 25.0% |
!! | TTTTCTAATGGTTTCTCTAA+TGG | - | chr1_3:66344250-66344269 | None:intergenic | 25.0% |
! | AACCATTAGAAAAGATTTAG+AGG | + | chr1_3:66344257-66344276 | Msa0134760:intron | 25.0% |
! | GTTCTATCAAAAACCATATT+TGG | - | chr1_3:66344297-66344316 | None:intergenic | 25.0% |
!! | TGGTTTTTGATAGAACATTA+TGG | + | chr1_3:66344301-66344320 | Msa0134760:intron | 25.0% |
! | TCATTCTTATCTCTCTAATA+GGG | - | chr1_3:66344481-66344500 | None:intergenic | 25.0% |
! | TTCATTCTTATCTCTCTAAT+AGG | - | chr1_3:66344482-66344501 | None:intergenic | 25.0% |
! | AGTTTACCAAATTTATTCCT+AGG | + | chr1_3:66344524-66344543 | Msa0134760:intron | 25.0% |
!!! | ACATCTTTTTTCTAATACCT+TGG | - | chr1_3:66344588-66344607 | None:intergenic | 25.0% |
!!! | TTCATATTTTTATGGTTTCC+AGG | - | chr1_3:66344631-66344650 | None:intergenic | 25.0% |
CACATAAAATTCCTCAACTT+GGG | - | chr1_3:66343403-66343422 | None:intergenic | 30.0% | |
TCACATAAAATTCCTCAACT+TGG | - | chr1_3:66343404-66343423 | None:intergenic | 30.0% | |
! | AGGAATTTTATGTGATCACA+TGG | + | chr1_3:66343409-66343428 | Msa0134760:CDS | 30.0% |
! | GGAATTTTATGTGATCACAT+GGG | + | chr1_3:66343410-66343429 | Msa0134760:CDS | 30.0% |
AAATTACCACTTAAGCTGAA+AGG | + | chr1_3:66343906-66343925 | Msa0134760:intron | 30.0% | |
! | TCTACCAACTTTTCTACTAT+AGG | - | chr1_3:66344111-66344130 | None:intergenic | 30.0% |
TTGATCTACTCTTCTTACAA+CGG | - | chr1_3:66344181-66344200 | None:intergenic | 30.0% | |
AAGAAGAGTAGATCAAATGA+AGG | + | chr1_3:66344185-66344204 | Msa0134760:intron | 30.0% | |
! | GTTTCTCTAATGGTTTTCTT+AGG | - | chr1_3:66344240-66344259 | None:intergenic | 30.0% |
! | GACCTCTAAATCTTTTCTAA+TGG | - | chr1_3:66344262-66344281 | None:intergenic | 30.0% |
AGAGATAAGAATGAAACACT+AGG | + | chr1_3:66344487-66344506 | Msa0134760:intron | 30.0% | |
GAGATAAGAATGAAACACTA+GGG | + | chr1_3:66344488-66344507 | Msa0134760:intron | 30.0% | |
TTCCTAGGAATAATATTCCT+TGG | + | chr1_3:66344539-66344558 | Msa0134760:intron | 30.0% | |
TTCCAAGGAATATTATTCCT+AGG | - | chr1_3:66344544-66344563 | None:intergenic | 30.0% | |
TATTCCTTGGAACATAAAGA+TGG | + | chr1_3:66344552-66344571 | Msa0134760:intron | 30.0% | |
ATTCCTTGGAACATAAAGAT+GGG | + | chr1_3:66344553-66344572 | Msa0134760:intron | 30.0% | |
AAGATGGGAATATTATTCCA+AGG | + | chr1_3:66344568-66344587 | Msa0134760:intron | 30.0% | |
! | TTTATTCTCACCCTTTTCTT+TGG | + | chr1_3:66344675-66344694 | Msa0134760:intron | 30.0% |
! | TTATTCTCACCCTTTTCTTT+GGG | + | chr1_3:66344676-66344695 | Msa0134760:intron | 30.0% |
! | ATTCCCAGAAACATTTTTAC+CGG | + | chr1_3:66344712-66344731 | Msa0134760:intron | 30.0% |
AGTAAACTTGTGACAAACAT+AGG | + | chr1_3:66344746-66344765 | Msa0134760:intron | 30.0% | |
!!! | ATTCCTATCGTTTTATTTCC+AGG | + | chr1_3:66344776-66344795 | Msa0134760:intron | 30.0% |
ATTCCTGGAAATAAAACGAT+AGG | - | chr1_3:66344782-66344801 | None:intergenic | 30.0% | |
AAGTTATCTTCGTATATTCC+TGG | - | chr1_3:66344797-66344816 | None:intergenic | 30.0% | |
ATTTCATTCTCCTTCTCTTA+GGG | - | chr1_3:66344832-66344851 | None:intergenic | 30.0% | |
AATTTCATTCTCCTTCTCTT+AGG | - | chr1_3:66344833-66344852 | None:intergenic | 30.0% | |
!!! | TTTTGATAGAAAGGTTGATG+TGG | + | chr1_3:66344853-66344872 | Msa0134760:intron | 30.0% |
ATATGAAAGAGAGAAATGGT+TGG | + | chr1_3:66345007-66345026 | Msa0134760:intron | 30.0% | |
TGTATATATGAAAGTAGTGC+AGG | + | chr1_3:66345083-66345102 | Msa0134760:intron | 30.0% | |
TAAGAATGTTAGTCCTATAG+AGG | + | chr1_3:66345302-66345321 | Msa0134760:CDS | 30.0% | |
CACATAAAATTCCTCAACTT+GGG | - | chr1_3:66343403-66343422 | None:intergenic | 30.0% | |
TCACATAAAATTCCTCAACT+TGG | - | chr1_3:66343404-66343423 | None:intergenic | 30.0% | |
! | AGGAATTTTATGTGATCACA+TGG | + | chr1_3:66343409-66343428 | Msa0134760:CDS | 30.0% |
! | GGAATTTTATGTGATCACAT+GGG | + | chr1_3:66343410-66343429 | Msa0134760:CDS | 30.0% |
AAATTACCACTTAAGCTGAA+AGG | + | chr1_3:66343906-66343925 | Msa0134760:intron | 30.0% | |
! | TCTACCAACTTTTCTACTAT+AGG | - | chr1_3:66344111-66344130 | None:intergenic | 30.0% |
TTGATCTACTCTTCTTACAA+CGG | - | chr1_3:66344181-66344200 | None:intergenic | 30.0% | |
AAGAAGAGTAGATCAAATGA+AGG | + | chr1_3:66344185-66344204 | Msa0134760:intron | 30.0% | |
! | GTTTCTCTAATGGTTTTCTT+AGG | - | chr1_3:66344240-66344259 | None:intergenic | 30.0% |
! | GACCTCTAAATCTTTTCTAA+TGG | - | chr1_3:66344262-66344281 | None:intergenic | 30.0% |
AGAGATAAGAATGAAACACT+AGG | + | chr1_3:66344487-66344506 | Msa0134760:intron | 30.0% | |
GAGATAAGAATGAAACACTA+GGG | + | chr1_3:66344488-66344507 | Msa0134760:intron | 30.0% | |
TTCCTAGGAATAATATTCCT+TGG | + | chr1_3:66344539-66344558 | Msa0134760:intron | 30.0% | |
TTCCAAGGAATATTATTCCT+AGG | - | chr1_3:66344544-66344563 | None:intergenic | 30.0% | |
TATTCCTTGGAACATAAAGA+TGG | + | chr1_3:66344552-66344571 | Msa0134760:intron | 30.0% | |
ATTCCTTGGAACATAAAGAT+GGG | + | chr1_3:66344553-66344572 | Msa0134760:intron | 30.0% | |
AAGATGGGAATATTATTCCA+AGG | + | chr1_3:66344568-66344587 | Msa0134760:intron | 30.0% | |
! | TTTATTCTCACCCTTTTCTT+TGG | + | chr1_3:66344675-66344694 | Msa0134760:intron | 30.0% |
! | TTATTCTCACCCTTTTCTTT+GGG | + | chr1_3:66344676-66344695 | Msa0134760:intron | 30.0% |
! | ATTCCCAGAAACATTTTTAC+CGG | + | chr1_3:66344712-66344731 | Msa0134760:intron | 30.0% |
AGTAAACTTGTGACAAACAT+AGG | + | chr1_3:66344746-66344765 | Msa0134760:intron | 30.0% | |
!!! | ATTCCTATCGTTTTATTTCC+AGG | + | chr1_3:66344776-66344795 | Msa0134760:intron | 30.0% |
ATTCCTGGAAATAAAACGAT+AGG | - | chr1_3:66344782-66344801 | None:intergenic | 30.0% | |
AAGTTATCTTCGTATATTCC+TGG | - | chr1_3:66344797-66344816 | None:intergenic | 30.0% | |
ATTTCATTCTCCTTCTCTTA+GGG | - | chr1_3:66344832-66344851 | None:intergenic | 30.0% | |
AATTTCATTCTCCTTCTCTT+AGG | - | chr1_3:66344833-66344852 | None:intergenic | 30.0% | |
!!! | TTTTGATAGAAAGGTTGATG+TGG | + | chr1_3:66344853-66344872 | Msa0134760:intron | 30.0% |
ATATGAAAGAGAGAAATGGT+TGG | + | chr1_3:66345007-66345026 | Msa0134760:intron | 30.0% | |
TGTATATATGAAAGTAGTGC+AGG | + | chr1_3:66345083-66345102 | Msa0134760:intron | 30.0% | |
TAAGAATGTTAGTCCTATAG+AGG | + | chr1_3:66345302-66345321 | Msa0134760:CDS | 30.0% | |
TTGAAATTGTGAGCTTGAGA+GGG | - | chr1_3:66343259-66343278 | None:intergenic | 35.0% | |
!! | CAAATCTTTGAAATGCCTAC+TGG | + | chr1_3:66343447-66343466 | Msa0134760:CDS | 35.0% |
CTTGCTAACTTGAGAAGATT+GGG | - | chr1_3:66343498-66343517 | None:intergenic | 35.0% | |
AGCAAGGAAAGAACAATGTT+TGG | + | chr1_3:66343512-66343531 | Msa0134760:intron | 35.0% | |
!! | AAAGAACAATGTTTGGCTCT+TGG | + | chr1_3:66343519-66343538 | Msa0134760:intron | 35.0% |
!!! | GAGCCAGAAATTTTAACTAG+TGG | + | chr1_3:66343553-66343572 | Msa0134760:intron | 35.0% |
CCTCCACTAGTTAAAATTTC+TGG | - | chr1_3:66343559-66343578 | None:intergenic | 35.0% | |
!!! | CCAGAAATTTTAACTAGTGG+AGG | + | chr1_3:66343556-66343575 | Msa0134760:intron | 35.0% |
TCAGAATATCATCCAAGTGA+TGG | - | chr1_3:66343687-66343706 | None:intergenic | 35.0% | |
! | GGATGATATTCTGAAAGTCT+TGG | + | chr1_3:66343693-66343712 | Msa0134760:intron | 35.0% |
TTGGATTTGGAAAAGCTTTC+CGG | - | chr1_3:66343735-66343754 | None:intergenic | 35.0% | |
AACTTTCCTTTCAGCTTAAG+TGG | - | chr1_3:66343915-66343934 | None:intergenic | 35.0% | |
AGCTGAAAGGAAAGTTCTAT+CGG | + | chr1_3:66343919-66343938 | Msa0134760:intron | 35.0% | |
AATGACATCATTAGAGAGAG+TGG | + | chr1_3:66344077-66344096 | Msa0134760:intron | 35.0% | |
ATGACATCATTAGAGAGAGT+GGG | + | chr1_3:66344078-66344097 | Msa0134760:intron | 35.0% | |
AGCACCTATAGTAGAAAAGT+TGG | + | chr1_3:66344104-66344123 | Msa0134760:intron | 35.0% | |
TGGTAGAAAATAGGCTTAGA+TGG | + | chr1_3:66344124-66344143 | Msa0134760:intron | 35.0% | |
GAAAATAGGCTTAGATGGTT+TGG | + | chr1_3:66344129-66344148 | Msa0134760:intron | 35.0% | |
AGATTTAGAGGTCAATGAGT+TGG | + | chr1_3:66344269-66344288 | Msa0134760:intron | 35.0% | |
! | CAATGAGTTGGATCCAAATA+TGG | + | chr1_3:66344281-66344300 | Msa0134760:intron | 35.0% |
ATTCCCATCTTTATGTTCCA+AGG | - | chr1_3:66344559-66344578 | None:intergenic | 35.0% | |
! | TTCCCAGAAACATTTTTACC+GGG | + | chr1_3:66344713-66344732 | Msa0134760:intron | 35.0% |
TTCCCGGTAAAAATGTTTCT+GGG | - | chr1_3:66344718-66344737 | None:intergenic | 35.0% | |
ATTCCCGGTAAAAATGTTTC+TGG | - | chr1_3:66344719-66344738 | None:intergenic | 35.0% | |
TATGCATGAAACAAGGATGA+AGG | + | chr1_3:66344886-66344905 | Msa0134760:intron | 35.0% | |
ATGCATGAAACAAGGATGAA+GGG | + | chr1_3:66344887-66344906 | Msa0134760:intron | 35.0% | |
GATGGTTGTGTGTGATATAT+GGG | + | chr1_3:66344954-66344973 | Msa0134760:intron | 35.0% | |
ATGGTTGTGTGTGATATATG+GGG | + | chr1_3:66344955-66344974 | Msa0134760:intron | 35.0% | |
!! | AATGGTTGGTTTCGTCATAA+TGG | + | chr1_3:66345021-66345040 | Msa0134760:intron | 35.0% |
TGGGAAACACTCTATAGAAT+TGG | - | chr1_3:66345185-66345204 | None:intergenic | 35.0% | |
! | TTCTATAGAGTGTTTCCCAA+TGG | + | chr1_3:66345186-66345205 | Msa0134760:intron | 35.0% |
! | TCTATAGAGTGTTTCCCAAT+GGG | + | chr1_3:66345187-66345206 | Msa0134760:intron | 35.0% |
!! | AAGTATTGAACTTCCCCATT+GGG | - | chr1_3:66345204-66345223 | None:intergenic | 35.0% |
AGTTCAATACTTGCATCCTA+AGG | + | chr1_3:66345212-66345231 | Msa0134760:intron | 35.0% | |
!! | GGTCAGAACTTTAGAACTAT+TGG | + | chr1_3:66345279-66345298 | Msa0134760:CDS | 35.0% |
TTGAAATTGTGAGCTTGAGA+GGG | - | chr1_3:66343259-66343278 | None:intergenic | 35.0% | |
!! | CAAATCTTTGAAATGCCTAC+TGG | + | chr1_3:66343447-66343466 | Msa0134760:CDS | 35.0% |
CTTGCTAACTTGAGAAGATT+GGG | - | chr1_3:66343498-66343517 | None:intergenic | 35.0% | |
AGCAAGGAAAGAACAATGTT+TGG | + | chr1_3:66343512-66343531 | Msa0134760:intron | 35.0% | |
!! | AAAGAACAATGTTTGGCTCT+TGG | + | chr1_3:66343519-66343538 | Msa0134760:intron | 35.0% |
!!! | GAGCCAGAAATTTTAACTAG+TGG | + | chr1_3:66343553-66343572 | Msa0134760:intron | 35.0% |
CCTCCACTAGTTAAAATTTC+TGG | - | chr1_3:66343559-66343578 | None:intergenic | 35.0% | |
!!! | CCAGAAATTTTAACTAGTGG+AGG | + | chr1_3:66343556-66343575 | Msa0134760:intron | 35.0% |
TCAGAATATCATCCAAGTGA+TGG | - | chr1_3:66343687-66343706 | None:intergenic | 35.0% | |
! | GGATGATATTCTGAAAGTCT+TGG | + | chr1_3:66343693-66343712 | Msa0134760:intron | 35.0% |
TTGGATTTGGAAAAGCTTTC+CGG | - | chr1_3:66343735-66343754 | None:intergenic | 35.0% | |
AACTTTCCTTTCAGCTTAAG+TGG | - | chr1_3:66343915-66343934 | None:intergenic | 35.0% | |
AGCTGAAAGGAAAGTTCTAT+CGG | + | chr1_3:66343919-66343938 | Msa0134760:intron | 35.0% | |
AATGACATCATTAGAGAGAG+TGG | + | chr1_3:66344077-66344096 | Msa0134760:intron | 35.0% | |
ATGACATCATTAGAGAGAGT+GGG | + | chr1_3:66344078-66344097 | Msa0134760:intron | 35.0% | |
AGCACCTATAGTAGAAAAGT+TGG | + | chr1_3:66344104-66344123 | Msa0134760:intron | 35.0% | |
TGGTAGAAAATAGGCTTAGA+TGG | + | chr1_3:66344124-66344143 | Msa0134760:intron | 35.0% | |
GAAAATAGGCTTAGATGGTT+TGG | + | chr1_3:66344129-66344148 | Msa0134760:intron | 35.0% | |
AGATTTAGAGGTCAATGAGT+TGG | + | chr1_3:66344269-66344288 | Msa0134760:intron | 35.0% | |
! | CAATGAGTTGGATCCAAATA+TGG | + | chr1_3:66344281-66344300 | Msa0134760:intron | 35.0% |
ATTCCCATCTTTATGTTCCA+AGG | - | chr1_3:66344559-66344578 | None:intergenic | 35.0% | |
! | TTCCCAGAAACATTTTTACC+GGG | + | chr1_3:66344713-66344732 | Msa0134760:intron | 35.0% |
TTCCCGGTAAAAATGTTTCT+GGG | - | chr1_3:66344718-66344737 | None:intergenic | 35.0% | |
ATTCCCGGTAAAAATGTTTC+TGG | - | chr1_3:66344719-66344738 | None:intergenic | 35.0% | |
TATGCATGAAACAAGGATGA+AGG | + | chr1_3:66344886-66344905 | Msa0134760:intron | 35.0% | |
ATGCATGAAACAAGGATGAA+GGG | + | chr1_3:66344887-66344906 | Msa0134760:intron | 35.0% | |
GATGGTTGTGTGTGATATAT+GGG | + | chr1_3:66344954-66344973 | Msa0134760:intron | 35.0% | |
ATGGTTGTGTGTGATATATG+GGG | + | chr1_3:66344955-66344974 | Msa0134760:intron | 35.0% | |
!! | AATGGTTGGTTTCGTCATAA+TGG | + | chr1_3:66345021-66345040 | Msa0134760:intron | 35.0% |
TGGGAAACACTCTATAGAAT+TGG | - | chr1_3:66345185-66345204 | None:intergenic | 35.0% | |
! | TTCTATAGAGTGTTTCCCAA+TGG | + | chr1_3:66345186-66345205 | Msa0134760:intron | 35.0% |
! | TCTATAGAGTGTTTCCCAAT+GGG | + | chr1_3:66345187-66345206 | Msa0134760:intron | 35.0% |
!! | AAGTATTGAACTTCCCCATT+GGG | - | chr1_3:66345204-66345223 | None:intergenic | 35.0% |
AGTTCAATACTTGCATCCTA+AGG | + | chr1_3:66345212-66345231 | Msa0134760:intron | 35.0% | |
!! | GGTCAGAACTTTAGAACTAT+TGG | + | chr1_3:66345279-66345298 | Msa0134760:CDS | 35.0% |
GAGATACGGTCATTAGGTTT+GGG | - | chr1_3:66343191-66343210 | None:intergenic | 40.0% | |
AGAGATACGGTCATTAGGTT+TGG | - | chr1_3:66343192-66343211 | None:intergenic | 40.0% | |
GTTTCCATGGTACAGAGATA+CGG | - | chr1_3:66343205-66343224 | None:intergenic | 40.0% | |
AATGTGGGTGATTGTTTCCA+TGG | - | chr1_3:66343218-66343237 | None:intergenic | 40.0% | |
CTTGAAATTGTGAGCTTGAG+AGG | - | chr1_3:66343260-66343279 | None:intergenic | 40.0% | |
CAACTTGGGCCTTACATAAA+AGG | - | chr1_3:66343389-66343408 | None:intergenic | 40.0% | |
TTTATGTAAGGCCCAAGTTG+AGG | + | chr1_3:66343389-66343408 | Msa0134760:CDS | 40.0% | |
!! | ATCTTTGAAATGCCTACTGG+TGG | + | chr1_3:66343450-66343469 | Msa0134760:CDS | 40.0% |
CCTTGCTAACTTGAGAAGAT+TGG | - | chr1_3:66343499-66343518 | None:intergenic | 40.0% | |
CCAATCTTCTCAAGTTAGCA+AGG | + | chr1_3:66343496-66343515 | Msa0134760:intron | 40.0% | |
AAAAGCTTTCCGGTGATCAT+GGG | - | chr1_3:66343725-66343744 | None:intergenic | 40.0% | |
CCTCAAACACTTGATGAATG+TGG | - | chr1_3:66343809-66343828 | None:intergenic | 40.0% | |
CCACATTCATCAAGTGTTTG+AGG | + | chr1_3:66343806-66343825 | Msa0134760:intron | 40.0% | |
CTTATCGCACAAAACACATG+AGG | - | chr1_3:66343886-66343905 | None:intergenic | 40.0% | |
AGACTAGACAGGATAGGATT+AGG | + | chr1_3:66344054-66344073 | Msa0134760:intron | 40.0% | |
TGACATCATTAGAGAGAGTG+GGG | + | chr1_3:66344079-66344098 | Msa0134760:intron | 40.0% | |
TCTTCTTACAACGGCATCTA+CGG | - | chr1_3:66344172-66344191 | None:intergenic | 40.0% | |
AGATCAAATGAAGGAGAGTC+AGG | + | chr1_3:66344194-66344213 | Msa0134760:intron | 40.0% | |
AAGGAGAGTCAGGTTAAAAG+AGG | + | chr1_3:66344204-66344223 | Msa0134760:intron | 40.0% | |
!! | AACAAAAGCACCCTAAGAGA+AGG | + | chr1_3:66344819-66344838 | Msa0134760:intron | 40.0% |
AGAAGAGAGAGAATTTCGCA+TGG | + | chr1_3:66344927-66344946 | Msa0134760:intron | 40.0% | |
GAAGAGAGAGAATTTCGCAT+GGG | + | chr1_3:66344928-66344947 | Msa0134760:intron | 40.0% | |
GGATGGTTGTGTGTGATATA+TGG | + | chr1_3:66344953-66344972 | Msa0134760:intron | 40.0% | |
TGGTTGTGTGTGATATATGG+GGG | + | chr1_3:66344956-66344975 | Msa0134760:intron | 40.0% | |
TATATGAAAGTAGTGCAGGC+AGG | + | chr1_3:66345087-66345106 | Msa0134760:intron | 40.0% | |
! | CTATAGAGTGTTTCCCAATG+GGG | + | chr1_3:66345188-66345207 | Msa0134760:intron | 40.0% |
!! | CAAGTATTGAACTTCCCCAT+TGG | - | chr1_3:66345205-66345224 | None:intergenic | 40.0% |
CAATACTTGCATCCTAAGGA+TGG | + | chr1_3:66345216-66345235 | Msa0134760:CDS | 40.0% | |
CCACTGAACTTAACCTCTAT+AGG | - | chr1_3:66345318-66345337 | None:intergenic | 40.0% | |
CCTATAGAGGTTAAGTTCAG+TGG | + | chr1_3:66345315-66345334 | Msa0134760:CDS | 40.0% | |
GAGATACGGTCATTAGGTTT+GGG | - | chr1_3:66343191-66343210 | None:intergenic | 40.0% | |
AGAGATACGGTCATTAGGTT+TGG | - | chr1_3:66343192-66343211 | None:intergenic | 40.0% | |
GTTTCCATGGTACAGAGATA+CGG | - | chr1_3:66343205-66343224 | None:intergenic | 40.0% | |
AATGTGGGTGATTGTTTCCA+TGG | - | chr1_3:66343218-66343237 | None:intergenic | 40.0% | |
CTTGAAATTGTGAGCTTGAG+AGG | - | chr1_3:66343260-66343279 | None:intergenic | 40.0% | |
CAACTTGGGCCTTACATAAA+AGG | - | chr1_3:66343389-66343408 | None:intergenic | 40.0% | |
TTTATGTAAGGCCCAAGTTG+AGG | + | chr1_3:66343389-66343408 | Msa0134760:CDS | 40.0% | |
!! | ATCTTTGAAATGCCTACTGG+TGG | + | chr1_3:66343450-66343469 | Msa0134760:CDS | 40.0% |
CCTTGCTAACTTGAGAAGAT+TGG | - | chr1_3:66343499-66343518 | None:intergenic | 40.0% | |
CCAATCTTCTCAAGTTAGCA+AGG | + | chr1_3:66343496-66343515 | Msa0134760:intron | 40.0% | |
AAAAGCTTTCCGGTGATCAT+GGG | - | chr1_3:66343725-66343744 | None:intergenic | 40.0% | |
CCTCAAACACTTGATGAATG+TGG | - | chr1_3:66343809-66343828 | None:intergenic | 40.0% | |
CCACATTCATCAAGTGTTTG+AGG | + | chr1_3:66343806-66343825 | Msa0134760:intron | 40.0% | |
CTTATCGCACAAAACACATG+AGG | - | chr1_3:66343886-66343905 | None:intergenic | 40.0% | |
AGACTAGACAGGATAGGATT+AGG | + | chr1_3:66344054-66344073 | Msa0134760:intron | 40.0% | |
TGACATCATTAGAGAGAGTG+GGG | + | chr1_3:66344079-66344098 | Msa0134760:intron | 40.0% | |
TCTTCTTACAACGGCATCTA+CGG | - | chr1_3:66344172-66344191 | None:intergenic | 40.0% | |
AGATCAAATGAAGGAGAGTC+AGG | + | chr1_3:66344194-66344213 | Msa0134760:intron | 40.0% | |
AAGGAGAGTCAGGTTAAAAG+AGG | + | chr1_3:66344204-66344223 | Msa0134760:intron | 40.0% | |
!! | AACAAAAGCACCCTAAGAGA+AGG | + | chr1_3:66344819-66344838 | Msa0134760:intron | 40.0% |
AGAAGAGAGAGAATTTCGCA+TGG | + | chr1_3:66344927-66344946 | Msa0134760:intron | 40.0% | |
GAAGAGAGAGAATTTCGCAT+GGG | + | chr1_3:66344928-66344947 | Msa0134760:intron | 40.0% | |
GGATGGTTGTGTGTGATATA+TGG | + | chr1_3:66344953-66344972 | Msa0134760:intron | 40.0% | |
TGGTTGTGTGTGATATATGG+GGG | + | chr1_3:66344956-66344975 | Msa0134760:intron | 40.0% | |
TATATGAAAGTAGTGCAGGC+AGG | + | chr1_3:66345087-66345106 | Msa0134760:intron | 40.0% | |
! | CTATAGAGTGTTTCCCAATG+GGG | + | chr1_3:66345188-66345207 | Msa0134760:intron | 40.0% |
!! | CAAGTATTGAACTTCCCCAT+TGG | - | chr1_3:66345205-66345224 | None:intergenic | 40.0% |
CAATACTTGCATCCTAAGGA+TGG | + | chr1_3:66345216-66345235 | Msa0134760:CDS | 40.0% | |
CCACTGAACTTAACCTCTAT+AGG | - | chr1_3:66345318-66345337 | None:intergenic | 40.0% | |
CCTATAGAGGTTAAGTTCAG+TGG | + | chr1_3:66345315-66345334 | Msa0134760:CDS | 40.0% | |
GGTACAGAGATACGGTCATT+AGG | - | chr1_3:66343197-66343216 | None:intergenic | 45.0% | |
ATGACCGTATCTCTGTACCA+TGG | + | chr1_3:66343198-66343217 | Msa0134760:CDS | 45.0% | |
! | GGATTGGTGAAGGACAATGT+GGG | - | chr1_3:66343233-66343252 | None:intergenic | 45.0% |
!! | TGGATTGGTGAAGGACAATG+TGG | - | chr1_3:66343234-66343253 | None:intergenic | 45.0% |
ATTGTGAGCTTGAGAGGGTT+TGG | - | chr1_3:66343254-66343273 | None:intergenic | 45.0% | |
AGTGCTGCCACTGAAAATTG+GGG | - | chr1_3:66343361-66343380 | None:intergenic | 45.0% | |
CAGTGCTGCCACTGAAAATT+GGG | - | chr1_3:66343362-66343381 | None:intergenic | 45.0% | |
! | CACTGGAGGCCTTTTATGTA+AGG | + | chr1_3:66343377-66343396 | Msa0134760:CDS | 45.0% |
!! | AAAATTTCTGGCTCCGCTAC+TGG | - | chr1_3:66343547-66343566 | None:intergenic | 45.0% |
GAAAAGCTTTCCGGTGATCA+TGG | - | chr1_3:66343726-66343745 | None:intergenic | 45.0% | |
ACCGGCAATGATGTATGGTA+CGG | + | chr1_3:66343953-66343972 | Msa0134760:intron | 45.0% | |
TCCGTACCATACATCATTGC+CGG | - | chr1_3:66343957-66343976 | None:intergenic | 45.0% | |
TGATGTATGGTACGGAGTGT+TGG | + | chr1_3:66343961-66343980 | Msa0134760:intron | 45.0% | |
! | GATGTATGGTACGGAGTGTT+GGG | + | chr1_3:66343962-66343981 | Msa0134760:intron | 45.0% |
CGCTTACTTTACTCTCGTGT+TGG | - | chr1_3:66343998-66344017 | None:intergenic | 45.0% | |
AGGATGTTGTGTTGGATGAG+TGG | + | chr1_3:66344029-66344048 | Msa0134760:intron | 45.0% | |
GATGAGTGGTAAGACTAGAC+AGG | + | chr1_3:66344043-66344062 | Msa0134760:intron | 45.0% | |
GTGGTAAGACTAGACAGGAT+AGG | + | chr1_3:66344048-66344067 | Msa0134760:intron | 45.0% | |
GACATCATTAGAGAGAGTGG+GGG | + | chr1_3:66344080-66344099 | Msa0134760:intron | 45.0% | |
CTTCTTACAACGGCATCTAC+GGG | - | chr1_3:66344171-66344190 | None:intergenic | 45.0% | |
! | AAGCCTTATCCCACTAAGTG+GGG | - | chr1_3:66344350-66344369 | None:intergenic | 45.0% |
! | CAAGCCTTATCCCACTAAGT+GGG | - | chr1_3:66344351-66344370 | None:intergenic | 45.0% |
AGAGAGAATTTCGCATGGGT+GGG | + | chr1_3:66344932-66344951 | Msa0134760:intron | 45.0% | |
! | TAAAGTTCTGACCAACCCCT+TGG | - | chr1_3:66345272-66345291 | None:intergenic | 45.0% |
GGTACAGAGATACGGTCATT+AGG | - | chr1_3:66343197-66343216 | None:intergenic | 45.0% | |
ATGACCGTATCTCTGTACCA+TGG | + | chr1_3:66343198-66343217 | Msa0134760:CDS | 45.0% | |
! | GGATTGGTGAAGGACAATGT+GGG | - | chr1_3:66343233-66343252 | None:intergenic | 45.0% |
!! | TGGATTGGTGAAGGACAATG+TGG | - | chr1_3:66343234-66343253 | None:intergenic | 45.0% |
ATTGTGAGCTTGAGAGGGTT+TGG | - | chr1_3:66343254-66343273 | None:intergenic | 45.0% | |
AGTGCTGCCACTGAAAATTG+GGG | - | chr1_3:66343361-66343380 | None:intergenic | 45.0% | |
CAGTGCTGCCACTGAAAATT+GGG | - | chr1_3:66343362-66343381 | None:intergenic | 45.0% | |
! | CACTGGAGGCCTTTTATGTA+AGG | + | chr1_3:66343377-66343396 | Msa0134760:CDS | 45.0% |
!! | AAAATTTCTGGCTCCGCTAC+TGG | - | chr1_3:66343547-66343566 | None:intergenic | 45.0% |
GAAAAGCTTTCCGGTGATCA+TGG | - | chr1_3:66343726-66343745 | None:intergenic | 45.0% | |
ACCGGCAATGATGTATGGTA+CGG | + | chr1_3:66343953-66343972 | Msa0134760:intron | 45.0% | |
TCCGTACCATACATCATTGC+CGG | - | chr1_3:66343957-66343976 | None:intergenic | 45.0% | |
TGATGTATGGTACGGAGTGT+TGG | + | chr1_3:66343961-66343980 | Msa0134760:intron | 45.0% | |
! | GATGTATGGTACGGAGTGTT+GGG | + | chr1_3:66343962-66343981 | Msa0134760:intron | 45.0% |
CGCTTACTTTACTCTCGTGT+TGG | - | chr1_3:66343998-66344017 | None:intergenic | 45.0% | |
AGGATGTTGTGTTGGATGAG+TGG | + | chr1_3:66344029-66344048 | Msa0134760:intron | 45.0% | |
GATGAGTGGTAAGACTAGAC+AGG | + | chr1_3:66344043-66344062 | Msa0134760:intron | 45.0% | |
GTGGTAAGACTAGACAGGAT+AGG | + | chr1_3:66344048-66344067 | Msa0134760:intron | 45.0% | |
GACATCATTAGAGAGAGTGG+GGG | + | chr1_3:66344080-66344099 | Msa0134760:intron | 45.0% | |
CTTCTTACAACGGCATCTAC+GGG | - | chr1_3:66344171-66344190 | None:intergenic | 45.0% | |
! | AAGCCTTATCCCACTAAGTG+GGG | - | chr1_3:66344350-66344369 | None:intergenic | 45.0% |
! | CAAGCCTTATCCCACTAAGT+GGG | - | chr1_3:66344351-66344370 | None:intergenic | 45.0% |
AGAGAGAATTTCGCATGGGT+GGG | + | chr1_3:66344932-66344951 | Msa0134760:intron | 45.0% | |
! | TAAAGTTCTGACCAACCCCT+TGG | - | chr1_3:66345272-66345291 | None:intergenic | 45.0% |
!! | TCAATATTTAAAAAAATATA+TGG | - | chr1_3:66343604-66343623 | None:intergenic | 5.0% |
!!! | TATTATAATTCATATTTTTA+TGG | - | chr1_3:66344639-66344658 | None:intergenic | 5.0% |
!! | TCAATATTTAAAAAAATATA+TGG | - | chr1_3:66343604-66343623 | None:intergenic | 5.0% |
!!! | TATTATAATTCATATTTTTA+TGG | - | chr1_3:66344639-66344658 | None:intergenic | 5.0% |
!! | GAGGGAGGTTTGAGTTGTCA+TGG | - | chr1_3:66343147-66343166 | None:intergenic | 50.0% |
! | TTAGGTTTGGGACCAGAGAG+AGG | - | chr1_3:66343179-66343198 | None:intergenic | 50.0% |
!! | GAGAGGGTTTGGATTGGTGA+AGG | - | chr1_3:66343243-66343262 | None:intergenic | 50.0% |
GAGCTTGAGAGGGTTTGGAT+TGG | - | chr1_3:66343249-66343268 | None:intergenic | 50.0% | |
CATAACAGCAGCTGTTGCTG+AGG | + | chr1_3:66343286-66343305 | Msa0134760:intron | 50.0% | |
!! | TTGCTGAGGAAGGCACCAAT+TGG | + | chr1_3:66343300-66343319 | Msa0134760:intron | 50.0% |
! | TGTCTGGGACTAACTCAGGT+GGG | - | chr1_3:66343332-66343351 | None:intergenic | 50.0% |
!! | AAATTGGGGAGGGAGTGTCT+GGG | - | chr1_3:66343347-66343366 | None:intergenic | 50.0% |
!! | AAAATTGGGGAGGGAGTGTC+TGG | - | chr1_3:66343348-66343367 | None:intergenic | 50.0% |
! | ACTCCCTCCCCAATTTTCAG+TGG | + | chr1_3:66343351-66343370 | Msa0134760:CDS | 50.0% |
CTGCCACTGAAAATTGGGGA+GGG | - | chr1_3:66343357-66343376 | None:intergenic | 50.0% | |
CCAGTGCTGCCACTGAAAAT+TGG | - | chr1_3:66343363-66343382 | None:intergenic | 50.0% | |
! | CCAATTTTCAGTGGCAGCAC+TGG | + | chr1_3:66343360-66343379 | Msa0134760:CDS | 50.0% |
!! | ATTTTCAGTGGCAGCACTGG+AGG | + | chr1_3:66343363-66343382 | Msa0134760:CDS | 50.0% |
ATTGGGACCTTCCCTCATGA+TGG | - | chr1_3:66343481-66343500 | None:intergenic | 50.0% | |
! | TTGGCTCTTGGAACCAGTAG+CGG | + | chr1_3:66343531-66343550 | Msa0134760:intron | 50.0% |
! | TTTCCGGTGATCATGGGTTG+AGG | - | chr1_3:66343719-66343738 | None:intergenic | 50.0% |
GTCAGACCGGCAATGATGTA+TGG | + | chr1_3:66343948-66343967 | Msa0134760:intron | 50.0% | |
! | CGAGAGTAAAGTAAGCGTCG+CGG | + | chr1_3:66344001-66344020 | Msa0134760:intron | 50.0% |
CGGAGATGAGGATGTTGTGT+TGG | + | chr1_3:66344021-66344040 | Msa0134760:intron | 50.0% | |
CTTATCCCACTAAGTGGGGT+CGG | - | chr1_3:66344346-66344365 | None:intergenic | 50.0% | |
! | CCAAGCCTTATCCCACTAAG+TGG | - | chr1_3:66344352-66344371 | None:intergenic | 50.0% |
CCACTTAGTGGGATAAGGCT+TGG | + | chr1_3:66344349-66344368 | Msa0134760:intron | 50.0% | |
GAGAGAGAATTTCGCATGGG+TGG | + | chr1_3:66344931-66344950 | Msa0134760:intron | 50.0% | |
AGAATTTCGCATGGGTGGGA+TGG | + | chr1_3:66344936-66344955 | Msa0134760:intron | 50.0% | |
AGCCACACACAAGGTTGTGT+GGG | - | chr1_3:66345115-66345134 | None:intergenic | 50.0% | |
AACCTAGTTCCAAGCAGTGG+CGG | - | chr1_3:66345138-66345157 | None:intergenic | 50.0% | |
CTCAACCTAGTTCCAAGCAG+TGG | - | chr1_3:66345141-66345160 | None:intergenic | 50.0% | |
CACTGCTTGGAACTAGGTTG+AGG | + | chr1_3:66345139-66345158 | Msa0134760:intron | 50.0% | |
TCTGGGTACACACCATCCTT+AGG | - | chr1_3:66345231-66345250 | None:intergenic | 50.0% | |
TACCCAGAGAAAGTGAACCC+TGG | + | chr1_3:66345243-66345262 | Msa0134760:CDS | 50.0% | |
GACCAGGGTTCACTTTCTCT+GGG | - | chr1_3:66345248-66345267 | None:intergenic | 50.0% | |
!! | GAGGGAGGTTTGAGTTGTCA+TGG | - | chr1_3:66343147-66343166 | None:intergenic | 50.0% |
! | TTAGGTTTGGGACCAGAGAG+AGG | - | chr1_3:66343179-66343198 | None:intergenic | 50.0% |
!! | GAGAGGGTTTGGATTGGTGA+AGG | - | chr1_3:66343243-66343262 | None:intergenic | 50.0% |
GAGCTTGAGAGGGTTTGGAT+TGG | - | chr1_3:66343249-66343268 | None:intergenic | 50.0% | |
CATAACAGCAGCTGTTGCTG+AGG | + | chr1_3:66343286-66343305 | Msa0134760:intron | 50.0% | |
!! | TTGCTGAGGAAGGCACCAAT+TGG | + | chr1_3:66343300-66343319 | Msa0134760:intron | 50.0% |
! | TGTCTGGGACTAACTCAGGT+GGG | - | chr1_3:66343332-66343351 | None:intergenic | 50.0% |
!! | AAATTGGGGAGGGAGTGTCT+GGG | - | chr1_3:66343347-66343366 | None:intergenic | 50.0% |
!! | AAAATTGGGGAGGGAGTGTC+TGG | - | chr1_3:66343348-66343367 | None:intergenic | 50.0% |
! | ACTCCCTCCCCAATTTTCAG+TGG | + | chr1_3:66343351-66343370 | Msa0134760:CDS | 50.0% |
CTGCCACTGAAAATTGGGGA+GGG | - | chr1_3:66343357-66343376 | None:intergenic | 50.0% | |
CCAGTGCTGCCACTGAAAAT+TGG | - | chr1_3:66343363-66343382 | None:intergenic | 50.0% | |
! | CCAATTTTCAGTGGCAGCAC+TGG | + | chr1_3:66343360-66343379 | Msa0134760:CDS | 50.0% |
!! | ATTTTCAGTGGCAGCACTGG+AGG | + | chr1_3:66343363-66343382 | Msa0134760:CDS | 50.0% |
ATTGGGACCTTCCCTCATGA+TGG | - | chr1_3:66343481-66343500 | None:intergenic | 50.0% | |
! | TTGGCTCTTGGAACCAGTAG+CGG | + | chr1_3:66343531-66343550 | Msa0134760:intron | 50.0% |
! | TTTCCGGTGATCATGGGTTG+AGG | - | chr1_3:66343719-66343738 | None:intergenic | 50.0% |
GTCAGACCGGCAATGATGTA+TGG | + | chr1_3:66343948-66343967 | Msa0134760:intron | 50.0% | |
! | CGAGAGTAAAGTAAGCGTCG+CGG | + | chr1_3:66344001-66344020 | Msa0134760:intron | 50.0% |
CGGAGATGAGGATGTTGTGT+TGG | + | chr1_3:66344021-66344040 | Msa0134760:intron | 50.0% | |
CTTATCCCACTAAGTGGGGT+CGG | - | chr1_3:66344346-66344365 | None:intergenic | 50.0% | |
! | CCAAGCCTTATCCCACTAAG+TGG | - | chr1_3:66344352-66344371 | None:intergenic | 50.0% |
CCACTTAGTGGGATAAGGCT+TGG | + | chr1_3:66344349-66344368 | Msa0134760:intron | 50.0% | |
GAGAGAGAATTTCGCATGGG+TGG | + | chr1_3:66344931-66344950 | Msa0134760:intron | 50.0% | |
AGAATTTCGCATGGGTGGGA+TGG | + | chr1_3:66344936-66344955 | Msa0134760:intron | 50.0% | |
AGCCACACACAAGGTTGTGT+GGG | - | chr1_3:66345115-66345134 | None:intergenic | 50.0% | |
AACCTAGTTCCAAGCAGTGG+CGG | - | chr1_3:66345138-66345157 | None:intergenic | 50.0% | |
CTCAACCTAGTTCCAAGCAG+TGG | - | chr1_3:66345141-66345160 | None:intergenic | 50.0% | |
CACTGCTTGGAACTAGGTTG+AGG | + | chr1_3:66345139-66345158 | Msa0134760:intron | 50.0% | |
TCTGGGTACACACCATCCTT+AGG | - | chr1_3:66345231-66345250 | None:intergenic | 50.0% | |
TACCCAGAGAAAGTGAACCC+TGG | + | chr1_3:66345243-66345262 | Msa0134760:CDS | 50.0% | |
GACCAGGGTTCACTTTCTCT+GGG | - | chr1_3:66345248-66345267 | None:intergenic | 50.0% | |
AGAGAGAGGAGGGGTGAAGA+GGG | - | chr1_3:66343165-66343184 | None:intergenic | 55.0% | |
! | TTTGGGACCAGAGAGAGGAG+GGG | - | chr1_3:66343174-66343193 | None:intergenic | 55.0% |
! | GTTTGGGACCAGAGAGAGGA+GGG | - | chr1_3:66343175-66343194 | None:intergenic | 55.0% |
ACAGCAGCTGTTGCTGAGGA+AGG | + | chr1_3:66343290-66343309 | Msa0134760:intron | 55.0% | |
TCAGGTGGGGTGAAGCCAAT+TGG | - | chr1_3:66343318-66343337 | None:intergenic | 55.0% | |
! | GTCTGGGACTAACTCAGGTG+GGG | - | chr1_3:66343331-66343350 | None:intergenic | 55.0% |
! | GTGTCTGGGACTAACTCAGG+TGG | - | chr1_3:66343333-66343352 | None:intergenic | 55.0% |
! | GGAGTGTCTGGGACTAACTC+AGG | - | chr1_3:66343336-66343355 | None:intergenic | 55.0% |
GCTGCCACTGAAAATTGGGG+AGG | - | chr1_3:66343358-66343377 | None:intergenic | 55.0% | |
ATGATGGCTGCACCACCAGT+AGG | - | chr1_3:66343465-66343484 | None:intergenic | 55.0% | |
! | TGGTGGTGCAGCCATCATGA+GGG | + | chr1_3:66343467-66343486 | Msa0134760:CDS | 55.0% |
TGGCCTCAACCCATGATCAC+CGG | + | chr1_3:66343713-66343732 | Msa0134760:intron | 55.0% | |
CTATCGGACAGCAGTCAGAC+CGG | + | chr1_3:66343935-66343954 | Msa0134760:intron | 55.0% | |
!! | GTATGGTACGGAGTGTTGGG+CGG | + | chr1_3:66343965-66343984 | Msa0134760:intron | 55.0% |
! | AAGTAAGCGTCGCGGAGATG+AGG | + | chr1_3:66344009-66344028 | Msa0134760:intron | 55.0% |
ACTAAGTGGGGTCGGCTACA+TGG | - | chr1_3:66344338-66344357 | None:intergenic | 55.0% | |
ATGTAGCCGACCCCACTTAG+TGG | + | chr1_3:66344337-66344356 | Msa0134760:intron | 55.0% | |
TGTAGCCGACCCCACTTAGT+GGG | + | chr1_3:66344338-66344357 | Msa0134760:intron | 55.0% | |
CGACCCCACTTAGTGGGATA+AGG | + | chr1_3:66344344-66344363 | Msa0134760:intron | 55.0% | |
AGCCCACACAACCTTGTGTG+TGG | + | chr1_3:66345110-66345129 | Msa0134760:intron | 55.0% | |
GAGCCACACACAAGGTTGTG+TGG | - | chr1_3:66345116-66345135 | None:intergenic | 55.0% | |
CGACCAGGGTTCACTTTCTC+TGG | - | chr1_3:66345249-66345268 | None:intergenic | 55.0% | |
AAAGTGAACCCTGGTCGCCA+AGG | + | chr1_3:66345252-66345271 | Msa0134760:CDS | 55.0% | |
AAGTGAACCCTGGTCGCCAA+GGG | + | chr1_3:66345253-66345272 | Msa0134760:CDS | 55.0% | |
AGAGAGAGGAGGGGTGAAGA+GGG | - | chr1_3:66343165-66343184 | None:intergenic | 55.0% | |
! | TTTGGGACCAGAGAGAGGAG+GGG | - | chr1_3:66343174-66343193 | None:intergenic | 55.0% |
! | GTTTGGGACCAGAGAGAGGA+GGG | - | chr1_3:66343175-66343194 | None:intergenic | 55.0% |
ACAGCAGCTGTTGCTGAGGA+AGG | + | chr1_3:66343290-66343309 | Msa0134760:intron | 55.0% | |
TCAGGTGGGGTGAAGCCAAT+TGG | - | chr1_3:66343318-66343337 | None:intergenic | 55.0% | |
! | GTCTGGGACTAACTCAGGTG+GGG | - | chr1_3:66343331-66343350 | None:intergenic | 55.0% |
! | GTGTCTGGGACTAACTCAGG+TGG | - | chr1_3:66343333-66343352 | None:intergenic | 55.0% |
! | GGAGTGTCTGGGACTAACTC+AGG | - | chr1_3:66343336-66343355 | None:intergenic | 55.0% |
GCTGCCACTGAAAATTGGGG+AGG | - | chr1_3:66343358-66343377 | None:intergenic | 55.0% | |
ATGATGGCTGCACCACCAGT+AGG | - | chr1_3:66343465-66343484 | None:intergenic | 55.0% | |
! | TGGTGGTGCAGCCATCATGA+GGG | + | chr1_3:66343467-66343486 | Msa0134760:CDS | 55.0% |
TGGCCTCAACCCATGATCAC+CGG | + | chr1_3:66343713-66343732 | Msa0134760:intron | 55.0% | |
CTATCGGACAGCAGTCAGAC+CGG | + | chr1_3:66343935-66343954 | Msa0134760:intron | 55.0% | |
!! | GTATGGTACGGAGTGTTGGG+CGG | + | chr1_3:66343965-66343984 | Msa0134760:intron | 55.0% |
! | AAGTAAGCGTCGCGGAGATG+AGG | + | chr1_3:66344009-66344028 | Msa0134760:intron | 55.0% |
ACTAAGTGGGGTCGGCTACA+TGG | - | chr1_3:66344338-66344357 | None:intergenic | 55.0% | |
ATGTAGCCGACCCCACTTAG+TGG | + | chr1_3:66344337-66344356 | Msa0134760:intron | 55.0% | |
TGTAGCCGACCCCACTTAGT+GGG | + | chr1_3:66344338-66344357 | Msa0134760:intron | 55.0% | |
CGACCCCACTTAGTGGGATA+AGG | + | chr1_3:66344344-66344363 | Msa0134760:intron | 55.0% | |
AGCCCACACAACCTTGTGTG+TGG | + | chr1_3:66345110-66345129 | Msa0134760:intron | 55.0% | |
GAGCCACACACAAGGTTGTG+TGG | - | chr1_3:66345116-66345135 | None:intergenic | 55.0% | |
CGACCAGGGTTCACTTTCTC+TGG | - | chr1_3:66345249-66345268 | None:intergenic | 55.0% | |
AAAGTGAACCCTGGTCGCCA+AGG | + | chr1_3:66345252-66345271 | Msa0134760:CDS | 55.0% | |
AAGTGAACCCTGGTCGCCAA+GGG | + | chr1_3:66345253-66345272 | Msa0134760:CDS | 55.0% | |
CAGAGAGAGGAGGGGTGAAG+AGG | - | chr1_3:66343166-66343185 | None:intergenic | 60.0% | |
CTCTTCACCCCTCCTCTCTC+TGG | + | chr1_3:66343164-66343183 | Msa0134760:CDS | 60.0% | |
! | GGTTTGGGACCAGAGAGAGG+AGG | - | chr1_3:66343176-66343195 | None:intergenic | 60.0% |
! | CTGGTGGTGCAGCCATCATG+AGG | + | chr1_3:66343466-66343485 | Msa0134760:CDS | 60.0% |
GGTGCAGCCATCATGAGGGA+AGG | + | chr1_3:66343471-66343490 | Msa0134760:CDS | 60.0% | |
CTCCGCCACTGCTTGGAACT+AGG | + | chr1_3:66345133-66345152 | Msa0134760:intron | 60.0% | |
AGTGAACCCTGGTCGCCAAG+GGG | + | chr1_3:66345254-66345273 | Msa0134760:CDS | 60.0% | |
CAGAGAGAGGAGGGGTGAAG+AGG | - | chr1_3:66343166-66343185 | None:intergenic | 60.0% | |
CTCTTCACCCCTCCTCTCTC+TGG | + | chr1_3:66343164-66343183 | Msa0134760:CDS | 60.0% | |
! | GGTTTGGGACCAGAGAGAGG+AGG | - | chr1_3:66343176-66343195 | None:intergenic | 60.0% |
! | CTGGTGGTGCAGCCATCATG+AGG | + | chr1_3:66343466-66343485 | Msa0134760:CDS | 60.0% |
GGTGCAGCCATCATGAGGGA+AGG | + | chr1_3:66343471-66343490 | Msa0134760:CDS | 60.0% | |
CTCCGCCACTGCTTGGAACT+AGG | + | chr1_3:66345133-66345152 | Msa0134760:intron | 60.0% | |
AGTGAACCCTGGTCGCCAAG+GGG | + | chr1_3:66345254-66345273 | Msa0134760:CDS | 60.0% | |
GAGAGGAGGGGTGAAGAGGG+AGG | - | chr1_3:66343162-66343181 | None:intergenic | 65.0% | |
! | CAGTGGCGGAGCCACACACA+AGG | - | chr1_3:66345124-66345143 | None:intergenic | 65.0% |
TGTGTGGCTCCGCCACTGCT+TGG | + | chr1_3:66345126-66345145 | Msa0134760:intron | 65.0% | |
AACCCTGGTCGCCAAGGGGT+TGG | + | chr1_3:66345258-66345277 | Msa0134760:CDS | 65.0% | |
GACCAACCCCTTGGCGACCA+GGG | - | chr1_3:66345263-66345282 | None:intergenic | 65.0% | |
TGACCAACCCCTTGGCGACC+AGG | - | chr1_3:66345264-66345283 | None:intergenic | 65.0% | |
GAGAGGAGGGGTGAAGAGGG+AGG | - | chr1_3:66343162-66343181 | None:intergenic | 65.0% | |
! | CAGTGGCGGAGCCACACACA+AGG | - | chr1_3:66345124-66345143 | None:intergenic | 65.0% |
TGTGTGGCTCCGCCACTGCT+TGG | + | chr1_3:66345126-66345145 | Msa0134760:intron | 65.0% | |
AACCCTGGTCGCCAAGGGGT+TGG | + | chr1_3:66345258-66345277 | Msa0134760:CDS | 65.0% | |
GACCAACCCCTTGGCGACCA+GGG | - | chr1_3:66345263-66345282 | None:intergenic | 65.0% | |
TGACCAACCCCTTGGCGACC+AGG | - | chr1_3:66345264-66345283 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 66343140 | 66345359 | 66343140 | ID=Msa0134760;Name=Msa0134760 |
chr1_3 | mRNA | 66343140 | 66345359 | 66343140 | ID=Msa0134760-mRNA-1;Parent=Msa0134760;Name=Msa0134760-mRNA-1;_AED=0.10;_eAED=0.14;_QI=0|0|0|1|0|0|3|0|161 |
chr1_3 | exon | 66343140 | 66343298 | 66343140 | ID=Msa0134760-mRNA-1:exon:22651;Parent=Msa0134760-mRNA-1 |
chr1_3 | exon | 66343312 | 66343492 | 66343312 | ID=Msa0134760-mRNA-1:exon:22652;Parent=Msa0134760-mRNA-1 |
chr1_3 | exon | 66345214 | 66345359 | 66345214 | ID=Msa0134760-mRNA-1:exon:22653;Parent=Msa0134760-mRNA-1 |
chr1_3 | CDS | 66343140 | 66343298 | 66343140 | ID=Msa0134760-mRNA-1:cds;Parent=Msa0134760-mRNA-1 |
chr1_3 | CDS | 66343312 | 66343492 | 66343312 | ID=Msa0134760-mRNA-1:cds;Parent=Msa0134760-mRNA-1 |
chr1_3 | CDS | 66345214 | 66345359 | 66345214 | ID=Msa0134760-mRNA-1:cds;Parent=Msa0134760-mRNA-1 |
Gene Sequence |
Protein sequence |