AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0421790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0421790 MtrunA17_Chr3g0122441 96.875 192 6 0 1 192 1 192 9.26e-136 377
Msa0421790 MtrunA17_Chr8g0356191 32.450 151 90 5 9 151 12 158 5.70e-16 72.4
Msa0421790 MtrunA17_Chr7g0260061 28.070 114 79 2 1 114 1 111 3.87e-12 62.0
Msa0421790 MtrunA17_Chr5g0395001 28.125 192 113 7 1 191 1 168 3.97e-12 61.6
Msa0421790 MtrunA17_Chr1g0205181 35.714 84 49 1 30 113 26 104 6.24e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0421790 AT1G27950.1 49.020 153 71 3 31 183 34 179 1.84e-42 141
Msa0421790 AT2G44290.1 34.395 157 91 7 10 161 13 162 4.99e-18 78.6
Msa0421790 AT2G44300.1 34.615 130 72 6 42 164 45 168 1.78e-14 68.9
Msa0421790 AT1G55260.2 26.829 164 100 6 1 159 44 192 6.12e-13 65.5
Msa0421790 AT1G55260.1 26.829 164 103 6 1 159 44 195 9.94e-13 64.7

Find 87 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACCCATGCTCTTGCTTTC+AGG 0.112193 3_2:+70817683 None:intergenic
TTTCCAGTTTCCCATTAATA+TGG 0.193004 3_2:-70813363 Msa0421790:three_prime_UTR
ACAAACTACTCCCATATTAA+TGG 0.208905 3_2:+70813352 None:intergenic
TGTAATGGTTTCTCGAATTA+TGG 0.233994 3_2:-70813436 Msa0421790:three_prime_UTR
GCATCACAGCATTCCTTCTT+TGG 0.234849 3_2:+70817776 None:intergenic
AGGAAGTAGTAAAGTATTAT+TGG 0.255709 3_2:-70813517 Msa0421790:three_prime_UTR
CCTCAATCTCACCATTAAAT+AGG 0.265782 3_2:-70818148 Msa0421790:five_prime_UTR
TGGTCTCGTTTCCTATTTAA+TGG 0.277493 3_2:+70818137 None:intergenic
CTCCCATATTAATGGGAAAC+TGG 0.300413 3_2:+70813360 None:intergenic
TCACAATAAAGGCAAATTAA+AGG 0.315377 3_2:+70813395 None:intergenic
AAGCAAGAGCATGGGTATTC+AGG 0.320822 3_2:-70817678 Msa0421790:CDS
CCATGTCTGGACTTTGCAAC+TGG 0.330521 3_2:-70817812 Msa0421790:CDS
GTTTATGTGTCTGTGTGTTT+TGG 0.332428 3_2:-70817909 Msa0421790:CDS
TAAATATATGGTTGTAAGTA+AGG 0.339209 3_2:+70818018 None:intergenic
CTCTAATGGAGCTGAAGATT+TGG 0.343257 3_2:-70817870 Msa0421790:CDS
GTAGTTTGTTGGTGATAATT+CGG 0.347528 3_2:-70813338 Msa0421790:three_prime_UTR
AAAGTACTGTTATAAATATA+TGG 0.347676 3_2:+70818006 None:intergenic
GATGATGGATCTCTGTATTA+AGG 0.351887 3_2:+70818174 None:intergenic
CAAACTACTCCCATATTAAT+GGG 0.361908 3_2:+70813353 None:intergenic
TAGCAGAAGCTGTGAATTGT+AGG 0.363437 3_2:+70817973 None:intergenic
CTTGCCGAGGTCGGAGTTGT+AGG 0.376495 3_2:+70813706 None:intergenic
AAGTAATAAGTTCACAATAA+AGG 0.379954 3_2:+70813384 None:intergenic
CTCATCATAGGTGGCTCTAA+TGG 0.381692 3_2:-70817884 Msa0421790:CDS
TTGTCTCTGCTGCTGTGTAA+TGG 0.386544 3_2:-70813451 Msa0421790:three_prime_UTR
TGTTGATCATGACAGGTCTA+AGG 0.387679 3_2:+70813665 None:intergenic
TACCCATGCTCTTGCTTTCA+GGG 0.394358 3_2:+70817684 None:intergenic
CACCTAACCACAGAGAAATA+TGG 0.399941 3_2:-70813542 Msa0421790:three_prime_UTR
TCCTCTTTGTCTTGGAAGAA+TGG 0.400860 3_2:-70813230 Msa0421790:three_prime_UTR
ACATAAACATTTGATGTTGT+TGG 0.404273 3_2:+70817924 None:intergenic
GGTATGGTGACAGAGCTTCT+TGG 0.409463 3_2:-70813820 Msa0421790:intron
TTCCAGTTTCCCATTAATAT+GGG 0.410497 3_2:-70813362 Msa0421790:three_prime_UTR
TTAATATGGGAGTAGTTTGT+TGG 0.412122 3_2:-70813349 Msa0421790:three_prime_UTR
CAACGTGATAACGGTGACTT+TGG 0.415623 3_2:-70813644 Msa0421790:CDS
AAGGAGAGAATAGGAAGTAC+AGG 0.419692 3_2:+70818081 None:intergenic
CCTATTTAATGGTGAGATTG+AGG 0.420416 3_2:+70818148 None:intergenic
GTTCTTGCTGCAGTACCTGC+TGG 0.431862 3_2:-70813616 Msa0421790:CDS
TATCATTCAACAGACTCATA+AGG 0.436377 3_2:-70817711 Msa0421790:CDS
AACCATATTTCTCTGTGGTT+AGG 0.446523 3_2:+70813540 None:intergenic
TTATCAGCATTTATACATGA+TGG 0.456328 3_2:-70813591 Msa0421790:exon
ATCATTCAACAGACTCATAA+GGG 0.476714 3_2:-70817710 Msa0421790:CDS
GGTAGGAAGAAGGAGAGAAT+AGG 0.479018 3_2:+70818072 None:intergenic
GTGAGATTGAGGAGTGATGA+TGG 0.481827 3_2:+70818159 None:intergenic
CAGCATTCCTTCTTTGGTGT+AGG 0.481891 3_2:+70817782 None:intergenic
ATCACGTTGTTGATCATGAC+AGG 0.490311 3_2:+70813658 None:intergenic
AGCATTTATACATGATGGGT+TGG 0.505960 3_2:-70813586 Msa0421790:exon
TATCAGCATTTATACATGAT+GGG 0.509940 3_2:-70813590 Msa0421790:exon
AGTAGTAAAGTATTATTGGT+TGG 0.514371 3_2:-70813513 Msa0421790:three_prime_UTR
TAGGAAGTACAGGTGAGGAA+AGG 0.518986 3_2:+70818091 None:intergenic
AGAAGAAGAAGGTAGGAAGA+AGG 0.526729 3_2:+70818062 None:intergenic
GCAAATTAAAGGCAACATCA+TGG 0.529197 3_2:+70813406 None:intergenic
CCAGTTGCAAAGTCCAGACA+TGG 0.534963 3_2:+70817812 None:intergenic
CATGATCAACAACGTGATAA+CGG 0.539145 3_2:-70813653 Msa0421790:CDS
TCCATTCTTCCAAGACAAAG+AGG 0.540825 3_2:+70813229 None:intergenic
GGCTTCAAAGTGTGGATCAG+TGG 0.542878 3_2:-70817849 Msa0421790:CDS
GAAGATTTGGCTTCAAAGTG+TGG 0.543294 3_2:-70817857 Msa0421790:CDS
CATGTCTGGACTTTGCAACT+GGG 0.544788 3_2:-70817811 Msa0421790:CDS
GAAAGCACCTACACCAAAGA+AGG 0.545842 3_2:-70817789 Msa0421790:CDS
GTAGTTGCAGCAGCTGATGA+AGG 0.549439 3_2:+70813736 None:intergenic
CCACCTGTGCTTGCCGAGGT+CGG 0.550705 3_2:+70813697 None:intergenic
ACTGGGACAGTCGGAAATGT+TGG 0.550714 3_2:+70817610 None:intergenic
AACCACAGAGAAATATGGTT+AGG 0.552832 3_2:-70813537 Msa0421790:three_prime_UTR
ATGATATAGCACAAACACTC+TGG 0.553006 3_2:+70817728 None:intergenic
AACTCCTACAACTCCGACCT+CGG 0.556736 3_2:-70813710 Msa0421790:CDS
ACTCCGACCTCGGCAAGCAC+AGG 0.560509 3_2:-70813700 Msa0421790:CDS
ATCAAGTCTCAAGAAGAAGA+AGG 0.562459 3_2:+70818051 None:intergenic
ATTAAACTTACTGGGACAGT+CGG 0.571110 3_2:+70817601 None:intergenic
TAGCCCTGAAAGCAAGAGCA+TGG 0.574374 3_2:-70817687 Msa0421790:CDS
TGATGCAGCTAACAGTATCA+AGG 0.574408 3_2:-70817759 Msa0421790:CDS
CCGACCTCGGCAAGCACAGG+TGG 0.579084 3_2:-70813697 Msa0421790:CDS
CCGTTGACGTGACAAACAGT+AGG 0.581377 3_2:+70817635 None:intergenic
GCAGCAGCTGATGAAGGAGT+AGG 0.585517 3_2:+70813742 None:intergenic
AGTCTCAAGAAGAAGAAGGT+AGG 0.587932 3_2:+70818055 None:intergenic
GAGAATAGGAAGTACAGGTG+AGG 0.596929 3_2:+70818086 None:intergenic
TTTAAAGATTGCAGCGTCGG+GGG 0.597687 3_2:+70813783 None:intergenic
AGCTAACAGTATCAAGGCAA+CGG 0.604523 3_2:-70817753 Msa0421790:CDS
CTCTGTATTAAGGCACTCCA+CGG 0.608725 3_2:+70818184 None:intergenic
TAAATGCTGATAAATCCAGC+AGG 0.610193 3_2:+70813601 None:intergenic
TTCCTAACCATATTTCTCTG+TGG 0.618262 3_2:+70813535 None:intergenic
ATAAGGACGTTTAGCTACCG+TGG 0.626164 3_2:-70818201 Msa0421790:five_prime_UTR
AGCCCTGAAAGCAAGAGCAT+GGG 0.629636 3_2:-70817686 Msa0421790:CDS
GATCATGACAGGTCTAAGGT+TGG 0.632709 3_2:+70813669 None:intergenic
TGAACCACCTGTGCTTGCCG+AGG 0.642075 3_2:+70813693 None:intergenic
GGTCGGAGTTGTAGGAGTTG+CGG 0.642214 3_2:+70813714 None:intergenic
CGTTGACGTGACAAACAGTA+GGG 0.644084 3_2:+70817636 None:intergenic
AGGTACTGCAGCAAGAACAA+TGG 0.653525 3_2:+70813621 None:intergenic
CCTACTGTTTGTCACGTCAA+CGG 0.678772 3_2:-70817635 Msa0421790:CDS
GATGAGTAAATGCAATAGTG+TGG 0.690328 3_2:+70818117 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATACTATATAAAAATGT+TGG + chr3_2:70816547-70816566 None:intergenic 10.0%
!! TTTATATAGTATATAAAACA+AGG - chr3_2:70816552-70816571 Msa0421790:intron 10.0%
!! TTATATAGTATATAAAACAA+GGG - chr3_2:70816553-70816572 Msa0421790:intron 10.0%
!!! GAAAATATAATTTTTAACAT+AGG - chr3_2:70816647-70816666 Msa0421790:intron 10.0%
!! AAATAATCAAAGTATATATT+GGG + chr3_2:70817095-70817114 None:intergenic 10.0%
!!! ATTTATTGAGATTTTTTTTA+TGG - chr3_2:70818174-70818193 Msa0421790:five_prime_UTR 10.0%
!!! AAAGTACTGTTATAAATATA+TGG + chr3_2:70813424-70813443 None:intergenic 15.0%
!! ATATATGACATTAATTTATC+AGG + chr3_2:70813904-70813923 None:intergenic 15.0%
!!! TTTTTTTTGTTACACAATAA+TGG - chr3_2:70813996-70814015 Msa0421790:intron 15.0%
!!! CTTATTATATTTGATTTTTC+CGG - chr3_2:70814382-70814401 Msa0421790:intron 15.0%
!! ATTTAATAAAATAAGGTTAC+TGG + chr3_2:70814495-70814514 None:intergenic 15.0%
!! AAAAATAAATGTATTTGAAC+TGG + chr3_2:70814618-70814637 None:intergenic 15.0%
!! TTTGTTTATAAGAAAAACTT+TGG + chr3_2:70814646-70814665 None:intergenic 15.0%
!! TATACATTAGTTAAAAAGTA+TGG - chr3_2:70815377-70815396 Msa0421790:intron 15.0%
!!! TAGAGTTTTCTAATAAATTA+TGG - chr3_2:70815973-70815992 Msa0421790:intron 15.0%
!!! AGAGTTTTCTAATAAATTAT+GGG - chr3_2:70815974-70815993 Msa0421790:intron 15.0%
!!! AATTTTTAACATAGGTTTTA+AGG - chr3_2:70816655-70816674 Msa0421790:intron 15.0%
!!! ATTAGTGTATAATCATTTTT+TGG - chr3_2:70816985-70817004 Msa0421790:intron 15.0%
!! GAAATAATCAAAGTATATAT+TGG + chr3_2:70817096-70817115 None:intergenic 15.0%
!! CATATATTTAACATAATGAA+AGG + chr3_2:70817204-70817223 None:intergenic 15.0%
!!! TTTGGGTTAATTTAAAAAAA+AGG - chr3_2:70817274-70817293 Msa0421790:intron 15.0%
!! TTGGGTTAATTTAAAAAAAA+GGG - chr3_2:70817275-70817294 Msa0421790:intron 15.0%
!!! AAAACGCAATATTTTTTTTT+AGG + chr3_2:70817480-70817499 None:intergenic 15.0%
!! ACATATAATAACATGAATAT+TGG - chr3_2:70817586-70817605 Msa0421790:intron 15.0%
!! TAAATATATGGTTGTAAGTA+AGG + chr3_2:70813412-70813431 None:intergenic 20.0%
!! AAGGAAAAATTAAACTTACT+GGG + chr3_2:70813837-70813856 None:intergenic 20.0%
!! AAAGGAAAAATTAAACTTAC+TGG + chr3_2:70813838-70813857 None:intergenic 20.0%
!! TAGCAATTAACGATAAAAAA+AGG + chr3_2:70813856-70813875 None:intergenic 20.0%
!! ATGCATGATATTATACATAT+TGG - chr3_2:70813922-70813941 Msa0421790:intron 20.0%
!! TGCATGATATTATACATATT+GGG - chr3_2:70813923-70813942 Msa0421790:intron 20.0%
!! CTATTACATAAAACTATGAT+AGG - chr3_2:70814083-70814102 Msa0421790:intron 20.0%
!!! ATATCTAATTATCTCTTTTG+TGG - chr3_2:70814513-70814532 Msa0421790:intron 20.0%
!!! TTTACATTCCACATTTTATT+TGG - chr3_2:70814783-70814802 Msa0421790:intron 20.0%
!!! TTTTTTGACCAAATAAAATG+TGG + chr3_2:70814794-70814813 None:intergenic 20.0%
!! AAAACTTATGTTAAAGTTTG+TGG - chr3_2:70815109-70815128 Msa0421790:intron 20.0%
!!! TGTAATTTTAGAAACATGAT+AGG - chr3_2:70815902-70815921 Msa0421790:intron 20.0%
!! TAATTGCGCAAAATAAATTA+AGG - chr3_2:70815936-70815955 Msa0421790:intron 20.0%
!! ATTTATTAGAAAACTCTAAC+CGG + chr3_2:70815971-70815990 None:intergenic 20.0%
!!! AAGACATAGTTTCTTTTTTT+GGG + chr3_2:70816038-70816057 None:intergenic 20.0%
!!! TTTTTGCATTGAAAATTGTA+CGG + chr3_2:70816095-70816114 None:intergenic 20.0%
!! GATTTCTGACATATAATTTA+TGG + chr3_2:70816170-70816189 None:intergenic 20.0%
!! TTAATGAGATCATTAAGTAA+AGG + chr3_2:70816290-70816309 None:intergenic 20.0%
!!! ATGGAGTATTAATTTTACAT+TGG - chr3_2:70816395-70816414 Msa0421790:intron 20.0%
!! TTAAGATGATAAAAGTTTGT+GGG + chr3_2:70816966-70816985 None:intergenic 20.0%
!! ATTAAGATGATAAAAGTTTG+TGG + chr3_2:70816967-70816986 None:intergenic 20.0%
!! AATATTCCATCAATTATTCT+TGG - chr3_2:70817251-70817270 Msa0421790:intron 20.0%
!!! CTATGATAAACTTCTAATTT+TGG + chr3_2:70817340-70817359 None:intergenic 20.0%
!! TAATAACATGAATATTGGTA+TGG - chr3_2:70817591-70817610 Msa0421790:intron 20.0%
!! AAGTAATAAGTTCACAATAA+AGG + chr3_2:70818046-70818065 None:intergenic 20.0%
!!! ATTCGGATTTAATTTCTTTT+TGG - chr3_2:70818106-70818125 Msa0421790:five_prime_UTR 20.0%
! ACATAAACATTTGATGTTGT+TGG + chr3_2:70813506-70813525 None:intergenic 25.0%
! ACAATAATGGTTCCAATTTA+CGG - chr3_2:70814009-70814028 Msa0421790:intron 25.0%
! TAGACTTATATCACAATTTC+AGG - chr3_2:70814136-70814155 Msa0421790:intron 25.0%
! ATCTATTGCATATTTGATGT+CGG - chr3_2:70814225-70814244 Msa0421790:intron 25.0%
!! TTTTAACAAACCGTAATGTT+TGG - chr3_2:70814307-70814326 Msa0421790:intron 25.0%
! TTTAACAAACCGTAATGTTT+GGG - chr3_2:70814308-70814327 Msa0421790:intron 25.0%
!! CTCTTTTAAATAAAATCCGA+GGG + chr3_2:70814569-70814588 None:intergenic 25.0%
!! TCTCTTTTAAATAAAATCCG+AGG + chr3_2:70814570-70814589 None:intergenic 25.0%
!! GTATAGGAGTATAAACATAA+GGG + chr3_2:70814709-70814728 None:intergenic 25.0%
!! TGTATAGGAGTATAAACATA+AGG + chr3_2:70814710-70814729 None:intergenic 25.0%
!!! ATTGGACATGTATTTTGAAA+CGG - chr3_2:70815436-70815455 Msa0421790:intron 25.0%
!! ACTACAAATGACACTATTTT+TGG - chr3_2:70815610-70815629 Msa0421790:intron 25.0%
!!! TTGGTAGATATTTTTGTTGT+TGG - chr3_2:70815629-70815648 Msa0421790:intron 25.0%
! TTGCGATAACTATTATAGAT+GGG - chr3_2:70815654-70815673 Msa0421790:intron 25.0%
! CCTAGAAAAGAAAAGAAAAT+TGG + chr3_2:70815846-70815865 None:intergenic 25.0%
!! CCAATTTTCTTTTCTTTTCT+AGG - chr3_2:70815843-70815862 Msa0421790:intron 25.0%
!!! CAAGACATAGTTTCTTTTTT+TGG + chr3_2:70816039-70816058 None:intergenic 25.0%
! ATTGTTTAAGCATCTAAAAG+TGG + chr3_2:70816121-70816140 None:intergenic 25.0%
!! AACATTTAAGACATTGTTGT+TGG + chr3_2:70816248-70816267 None:intergenic 25.0%
!! CTAATATATGCTCTAAATGT+TGG + chr3_2:70816518-70816537 None:intergenic 25.0%
!!! AAAAGCTAACTTGTGTTTTT+AGG - chr3_2:70816576-70816595 Msa0421790:intron 25.0%
! TAAGATGATAAAAGTTTGTG+GGG + chr3_2:70816965-70816984 None:intergenic 25.0%
!!! TCATGGATGATAGTTTTAAA+AGG + chr3_2:70817540-70817559 None:intergenic 25.0%
!! CAATCTTTAAAAATGCTTCA+AGG - chr3_2:70817656-70817675 Msa0421790:CDS 25.0%
! TTATCAGCATTTATACATGA+TGG - chr3_2:70817836-70817855 Msa0421790:CDS 25.0%
! TATCAGCATTTATACATGAT+GGG - chr3_2:70817837-70817856 Msa0421790:CDS 25.0%
!! AGGAAGTAGTAAAGTATTAT+TGG - chr3_2:70817910-70817929 Msa0421790:CDS 25.0%
!! AGTAGTAAAGTATTATTGGT+TGG - chr3_2:70817914-70817933 Msa0421790:CDS 25.0%
! TCACAATAAAGGCAAATTAA+AGG + chr3_2:70818035-70818054 None:intergenic 25.0%
TATCATTCAACAGACTCATA+AGG - chr3_2:70813716-70813735 Msa0421790:CDS 30.0%
ATCATTCAACAGACTCATAA+GGG - chr3_2:70813717-70813736 Msa0421790:CDS 30.0%
ATATGCATGAAACCGTAAAT+TGG + chr3_2:70814024-70814043 None:intergenic 30.0%
!! CTATCATATACGTTTGTTGT+CGG + chr3_2:70814172-70814191 None:intergenic 30.0%
TTGTTCACTAAAATTGACAC+CGG + chr3_2:70814404-70814423 None:intergenic 30.0%
! TCTAATTATCTCTTTTGTGG+TGG - chr3_2:70814516-70814535 Msa0421790:intron 30.0%
! TTACAAAAGTACAGTTTGTC+CGG + chr3_2:70814749-70814768 None:intergenic 30.0%
! TTTCCCTTTCTGACATTTTT+AGG - chr3_2:70814870-70814889 Msa0421790:intron 30.0%
!! CTTGGACATGTATTTTGAAA+CGG + chr3_2:70815215-70815234 None:intergenic 30.0%
ATAGTGCACATTGCAAAAAT+TGG - chr3_2:70815418-70815437 Msa0421790:intron 30.0%
GTTGCGATAACTATTATAGA+TGG - chr3_2:70815653-70815672 Msa0421790:intron 30.0%
TGCGATAACTATTATAGATG+GGG - chr3_2:70815655-70815674 Msa0421790:intron 30.0%
AATGACCTGTCATCTATATT+GGG - chr3_2:70815698-70815717 Msa0421790:intron 30.0%
ATTGATATGCGAACTAATGA+AGG + chr3_2:70815810-70815829 None:intergenic 30.0%
TTCCTTAAACAATGCCTTTA+GGG + chr3_2:70816015-70816034 None:intergenic 30.0%
GTCAGAAATCTTATGTATAG+AGG - chr3_2:70816180-70816199 Msa0421790:intron 30.0%
TCTTATGTATAGAGGAACAA+AGG - chr3_2:70816188-70816207 Msa0421790:intron 30.0%
!!! GTGTGAGTGATTTGTTTTAT+GGG + chr3_2:70816743-70816762 None:intergenic 30.0%
!!! AGTGTGAGTGATTTGTTTTA+TGG + chr3_2:70816744-70816763 None:intergenic 30.0%
AACAAATCACTCACACTAAA+TGG - chr3_2:70816747-70816766 Msa0421790:intron 30.0%
TATAAATACCCAACTCATTC+TGG - chr3_2:70817178-70817197 Msa0421790:intron 30.0%
TCCATCAATTATTCTTGGTT+TGG - chr3_2:70817256-70817275 Msa0421790:intron 30.0%
CCATCAATTATTCTTGGTTT+GGG - chr3_2:70817257-70817276 Msa0421790:intron 30.0%
! TCTTGTTATCTTGTGTCTTA+AGG - chr3_2:70817298-70817317 Msa0421790:intron 30.0%
! CTTGTTATCTTGTGTCTTAA+GGG - chr3_2:70817299-70817318 Msa0421790:intron 30.0%
TGTCATTAGCAACTTTATCA+TGG + chr3_2:70817557-70817576 None:intergenic 30.0%
!! ATTTTTAAAGATTGCAGCGT+CGG + chr3_2:70817650-70817669 None:intergenic 30.0%
TGTAATGGTTTCTCGAATTA+TGG - chr3_2:70817991-70818010 Msa0421790:five_prime_UTR 30.0%
TTTCCAGTTTCCCATTAATA+TGG - chr3_2:70818064-70818083 Msa0421790:five_prime_UTR 30.0%
TTCCAGTTTCCCATTAATAT+GGG - chr3_2:70818065-70818084 Msa0421790:five_prime_UTR 30.0%
CAAACTACTCCCATATTAAT+GGG + chr3_2:70818077-70818096 None:intergenic 30.0%
ACAAACTACTCCCATATTAA+TGG + chr3_2:70818078-70818097 None:intergenic 30.0%
! TTAATATGGGAGTAGTTTGT+TGG - chr3_2:70818078-70818097 Msa0421790:five_prime_UTR 30.0%
!! GTAGTTTGTTGGTGATAATT+CGG - chr3_2:70818089-70818108 Msa0421790:five_prime_UTR 30.0%
!! GATGATGGATCTCTGTATTA+AGG + chr3_2:70813256-70813275 None:intergenic 35.0%
CCTATTTAATGGTGAGATTG+AGG + chr3_2:70813282-70813301 None:intergenic 35.0%
CCTCAATCTCACCATTAAAT+AGG - chr3_2:70813279-70813298 Msa0421790:three_prime_UTR 35.0%
TGGTCTCGTTTCCTATTTAA+TGG + chr3_2:70813293-70813312 None:intergenic 35.0%
GATGAGTAAATGCAATAGTG+TGG + chr3_2:70813313-70813332 None:intergenic 35.0%
ATCAAGTCTCAAGAAGAAGA+AGG + chr3_2:70813379-70813398 None:intergenic 35.0%
! GTTTATGTGTCTGTGTGTTT+TGG - chr3_2:70813518-70813537 Msa0421790:three_prime_UTR 35.0%
TCAAAAAGTGATTCCATGTC+TGG - chr3_2:70813602-70813621 Msa0421790:CDS 35.0%
ATGATATAGCACAAACACTC+TGG + chr3_2:70813702-70813721 None:intergenic 35.0%
ATTAAACTTACTGGGACAGT+CGG + chr3_2:70813829-70813848 None:intergenic 35.0%
! TGATCGACTTAGTTAGAGTA+CGG + chr3_2:70814196-70814215 None:intergenic 35.0%
ATTATCTCTAAACACTCCCT+CGG - chr3_2:70814550-70814569 Msa0421790:intron 35.0%
ATAACTCTATGCGTGTGTAT+AGG + chr3_2:70814725-70814744 None:intergenic 35.0%
! TACAAAAGTACAGTTTGTCC+GGG + chr3_2:70814748-70814767 None:intergenic 35.0%
GATATGGTCTACGTATATAG+TGG + chr3_2:70814846-70814865 None:intergenic 35.0%
AAATGTCAGAAAGGGAAAAG+AGG + chr3_2:70814868-70814887 None:intergenic 35.0%
AGGCCTAAAAATGTCAGAAA+GGG + chr3_2:70814876-70814895 None:intergenic 35.0%
! GTTTCTGCAATTTTCACAAG+AGG + chr3_2:70814896-70814915 None:intergenic 35.0%
TGTTCTTAATCATCGACAAG+AGG + chr3_2:70814923-70814942 None:intergenic 35.0%
!!! GACATGTATTTTGAAACGGA+TGG + chr3_2:70815440-70815459 None:intergenic 35.0%
!!! GACATGTATTTTGAAACGGA+GGG - chr3_2:70815440-70815459 Msa0421790:intron 35.0%
GAATGACCTGTCATCTATAT+TGG - chr3_2:70815697-70815716 Msa0421790:intron 35.0%
ATTTAACCTGTCTAGATGCA+AGG + chr3_2:70815763-70815782 None:intergenic 35.0%
TTGCATCTAGACAGGTTAAA+TGG - chr3_2:70815762-70815781 Msa0421790:intron 35.0%
TGCATCTAGACAGGTTAAAT+GGG - chr3_2:70815763-70815782 Msa0421790:intron 35.0%
TAAATTAAGGTCATGCTAGC+CGG - chr3_2:70815949-70815968 Msa0421790:intron 35.0%
GTTCCTTAAACAATGCCTTT+AGG + chr3_2:70816016-70816035 None:intergenic 35.0%
ATGCTTAAACAATGCCCTTA+GGG - chr3_2:70816128-70816147 Msa0421790:intron 35.0%
ATTCTCGAACATGCATTCTT+AGG + chr3_2:70816371-70816390 None:intergenic 35.0%
TGCATGTTCGAGAATTCAAA+TGG - chr3_2:70816376-70816395 Msa0421790:intron 35.0%
!!! ACTTAGACTAGCTTCTTTTC+AGG + chr3_2:70817118-70817137 None:intergenic 35.0%
CCCAAACCAAGAATAATTGA+TGG + chr3_2:70817260-70817279 None:intergenic 35.0%
AATATTAACATGTGCCCCAA+GGG + chr3_2:70817455-70817474 None:intergenic 35.0%
AAATATTAACATGTGCCCCA+AGG + chr3_2:70817456-70817475 None:intergenic 35.0%
!! TTTTTAAAGATTGCAGCGTC+GGG + chr3_2:70817649-70817668 None:intergenic 35.0%
CATGATCAACAACGTGATAA+CGG - chr3_2:70817774-70817793 Msa0421790:CDS 35.0%
TAAATGCTGATAAATCCAGC+AGG + chr3_2:70817829-70817848 None:intergenic 35.0%
!! AGCATTTATACATGATGGGT+TGG - chr3_2:70817841-70817860 Msa0421790:CDS 35.0%
AACCATATTTCTCTGTGGTT+AGG + chr3_2:70817890-70817909 None:intergenic 35.0%
AACCACAGAGAAATATGGTT+AGG - chr3_2:70817890-70817909 Msa0421790:CDS 35.0%
TTCCTAACCATATTTCTCTG+TGG + chr3_2:70817895-70817914 None:intergenic 35.0%
!! CTGCATATCTGTTTTTCTGT+AGG - chr3_2:70817950-70817969 Msa0421790:exon 35.0%
GCAAATTAAAGGCAACATCA+TGG + chr3_2:70818024-70818043 None:intergenic 35.0%
! TTTTATGGTCCTCTTTGTCT+TGG - chr3_2:70818189-70818208 Msa0421790:five_prime_UTR 35.0%
! AAGGAGAGAATAGGAAGTAC+AGG + chr3_2:70813349-70813368 None:intergenic 40.0%
AGAAGAAGAAGGTAGGAAGA+AGG + chr3_2:70813368-70813387 None:intergenic 40.0%
AGTCTCAAGAAGAAGAAGGT+AGG + chr3_2:70813375-70813394 None:intergenic 40.0%
TAGCAGAAGCTGTGAATTGT+AGG + chr3_2:70813457-70813476 None:intergenic 40.0%
!!! TGTGTTTTGGCTCTCATCAT+AGG - chr3_2:70813531-70813550 Msa0421790:three_prime_UTR 40.0%
CTCTAATGGAGCTGAAGATT+TGG - chr3_2:70813557-70813576 Msa0421790:three_prime_UTR 40.0%
! GAAGATTTGGCTTCAAAGTG+TGG - chr3_2:70813570-70813589 Msa0421790:three_prime_UTR 40.0%
TGATGCAGCTAACAGTATCA+AGG - chr3_2:70813668-70813687 Msa0421790:CDS 40.0%
AGCTAACAGTATCAAGGCAA+CGG - chr3_2:70813674-70813693 Msa0421790:CDS 40.0%
TATTGTGAGAGAGGGAGAAT+AGG + chr3_2:70813962-70813981 None:intergenic 40.0%
TTCTCCCTCTCTCACAATAA+TGG - chr3_2:70813963-70813982 Msa0421790:intron 40.0%
GTGACCATTATTGTGAGAGA+GGG + chr3_2:70813970-70813989 None:intergenic 40.0%
TGTGACCATTATTGTGAGAG+AGG + chr3_2:70813971-70813990 None:intergenic 40.0%
! GATCGACTTAGTTAGAGTAC+GGG + chr3_2:70814195-70814214 None:intergenic 40.0%
CTACACAAGCCCAAACATTA+CGG + chr3_2:70814320-70814339 None:intergenic 40.0%
! ACATAAGGGAAGCTACGTTT+TGG + chr3_2:70814695-70814714 None:intergenic 40.0%
CAGAAAGGGAAAAGAGGATA+TGG + chr3_2:70814862-70814881 None:intergenic 40.0%
GAGGCCTAAAAATGTCAGAA+AGG + chr3_2:70814877-70814896 None:intergenic 40.0%
TTAATCATCGACAAGAGGCA+GGG + chr3_2:70814918-70814937 None:intergenic 40.0%
CCAACGCAAGAGAATATTGT+GGG + chr3_2:70815049-70815068 None:intergenic 40.0%
CCACAATATTCTCTTGCGTT+GGG - chr3_2:70815047-70815066 Msa0421790:intron 40.0%
CATATGTGAAGTGGTTGACT+TGG + chr3_2:70815233-70815252 None:intergenic 40.0%
GTGCATTTGCATATGTGAAG+TGG + chr3_2:70815242-70815261 None:intergenic 40.0%
!!! GGACATGTATTTTGAAACGG+AGG - chr3_2:70815439-70815458 Msa0421790:intron 40.0%
TGACAGGTCATTCAAGATTG+AGG + chr3_2:70815690-70815709 None:intergenic 40.0%
ACCTGTCATCTATATTGGGT+GGG - chr3_2:70815702-70815721 Msa0421790:intron 40.0%
!! TGCCCTAAAGGCATTGTTTA+AGG - chr3_2:70816010-70816029 Msa0421790:intron 40.0%
GATGCTTAAACAATGCCCTT+AGG - chr3_2:70816127-70816146 Msa0421790:intron 40.0%
AATGCTAACAAGTGCCCTAA+GGG + chr3_2:70816145-70816164 None:intergenic 40.0%
AAATGCTAACAAGTGCCCTA+AGG + chr3_2:70816146-70816165 None:intergenic 40.0%
!!! CAGACTCAAGTTTTTTCACG+AGG - chr3_2:70816801-70816820 Msa0421790:intron 40.0%
! TCTTTCGAACGATCGTCTTT+TGG - chr3_2:70816872-70816891 Msa0421790:intron 40.0%
! CTTTCGAACGATCGTCTTTT+GGG - chr3_2:70816873-70816892 Msa0421790:intron 40.0%
ATGAAAGGCCAGAATGAGTT+GGG + chr3_2:70817189-70817208 None:intergenic 40.0%
AATGAAAGGCCAGAATGAGT+TGG + chr3_2:70817190-70817209 None:intergenic 40.0%
AGCAGCAGTAGTAGTATATG+TGG - chr3_2:70817225-70817244 Msa0421790:intron 40.0%
GCAGCAGTAGTAGTATATGT+GGG - chr3_2:70817226-70817245 Msa0421790:intron 40.0%
! TGTCTTAAGGGCACAAGTTA+AGG - chr3_2:70817311-70817330 Msa0421790:intron 40.0%
AATTCCTTAGCATATGCCCT+TGG - chr3_2:70817436-70817455 Msa0421790:intron 40.0%
ATTCCTTAGCATATGCCCTT+GGG - chr3_2:70817437-70817456 Msa0421790:intron 40.0%
!! TTTTAAAGATTGCAGCGTCG+GGG + chr3_2:70817648-70817667 None:intergenic 40.0%
TGTTGATCATGACAGGTCTA+AGG + chr3_2:70817765-70817784 None:intergenic 40.0%
ATCACGTTGTTGATCATGAC+AGG + chr3_2:70817772-70817791 None:intergenic 40.0%
CACCTAACCACAGAGAAATA+TGG - chr3_2:70817885-70817904 Msa0421790:CDS 40.0%
CTCCCATATTAATGGGAAAC+TGG + chr3_2:70818070-70818089 None:intergenic 40.0%
TCCTCTTTGTCTTGGAAGAA+TGG - chr3_2:70818197-70818216 Msa0421790:five_prime_UTR 40.0%
TCCATTCTTCCAAGACAAAG+AGG + chr3_2:70818201-70818220 None:intergenic 40.0%
! CTCTGTATTAAGGCACTCCA+CGG + chr3_2:70813246-70813265 None:intergenic 45.0%
GTGAGATTGAGGAGTGATGA+TGG + chr3_2:70813271-70813290 None:intergenic 45.0%
! TAGGAAGTACAGGTGAGGAA+AGG + chr3_2:70813339-70813358 None:intergenic 45.0%
! GAGAATAGGAAGTACAGGTG+AGG + chr3_2:70813344-70813363 None:intergenic 45.0%
GGTAGGAAGAAGGAGAGAAT+AGG + chr3_2:70813358-70813377 None:intergenic 45.0%
!!! GTTTTGGCTCTCATCATAGG+TGG - chr3_2:70813534-70813553 Msa0421790:three_prime_UTR 45.0%
!! CTCATCATAGGTGGCTCTAA+TGG - chr3_2:70813543-70813562 Msa0421790:three_prime_UTR 45.0%
CATGTCTGGACTTTGCAACT+GGG - chr3_2:70813616-70813635 Msa0421790:CDS 45.0%
!! GAAAGCACCTACACCAAAGA+AGG - chr3_2:70813638-70813657 Msa0421790:CDS 45.0%
! CAGCATTCCTTCTTTGGTGT+AGG + chr3_2:70813648-70813667 None:intergenic 45.0%
GCATCACAGCATTCCTTCTT+TGG + chr3_2:70813654-70813673 None:intergenic 45.0%
TACCCATGCTCTTGCTTTCA+GGG + chr3_2:70813746-70813765 None:intergenic 45.0%
ATACCCATGCTCTTGCTTTC+AGG + chr3_2:70813747-70813766 None:intergenic 45.0%
! AAGCAAGAGCATGGGTATTC+AGG - chr3_2:70813749-70813768 Msa0421790:CDS 45.0%
CGTTGACGTGACAAACAGTA+GGG + chr3_2:70813794-70813813 None:intergenic 45.0%
CCTACTGTTTGTCACGTCAA+CGG - chr3_2:70813792-70813811 Msa0421790:CDS 45.0%
ACACACGCATAGAGTTATCC+CGG - chr3_2:70814727-70814746 Msa0421790:intron 45.0%
CTTAATCATCGACAAGAGGC+AGG + chr3_2:70814919-70814938 None:intergenic 45.0%
CCCACAATATTCTCTTGCGT+TGG - chr3_2:70815046-70815065 Msa0421790:intron 45.0%
CCCAACGCAAGAGAATATTG+TGG + chr3_2:70815050-70815069 None:intergenic 45.0%
CAATATTCTCTTGCGTTGGG+AGG - chr3_2:70815050-70815069 Msa0421790:intron 45.0%
GACCTGTCATCTATATTGGG+TGG - chr3_2:70815701-70815720 Msa0421790:intron 45.0%
TCCCACCCAATATAGATGAC+AGG + chr3_2:70815706-70815725 None:intergenic 45.0%
TGTCATCTATATTGGGTGGG+AGG - chr3_2:70815705-70815724 Msa0421790:intron 45.0%
CTTGCTAACAAGTGCCCTAA+AGG - chr3_2:70815998-70816017 Msa0421790:intron 45.0%
TTCCTTAGCATATGCCCTTG+GGG - chr3_2:70817438-70817457 Msa0421790:intron 45.0%
! TTTAAAGATTGCAGCGTCGG+GGG + chr3_2:70817647-70817666 None:intergenic 45.0%
! GATCATGACAGGTCTAAGGT+TGG + chr3_2:70817761-70817780 None:intergenic 45.0%
!! CAACGTGATAACGGTGACTT+TGG - chr3_2:70817783-70817802 Msa0421790:CDS 45.0%
! AGGTACTGCAGCAAGAACAA+TGG + chr3_2:70817809-70817828 None:intergenic 45.0%
TTGTCTCTGCTGCTGTGTAA+TGG - chr3_2:70817976-70817995 Msa0421790:five_prime_UTR 45.0%
!! ATTAGATATTTAATAAAATA+AGG + chr3_2:70814502-70814521 None:intergenic 5.0%
!!! ATACTATTAATTTTTTTTTT+TGG - chr3_2:70815505-70815524 Msa0421790:intron 5.0%
!!! AAATATAAAAATTTAACTTT+TGG + chr3_2:70816698-70816717 None:intergenic 5.0%
GGCTTCAAAGTGTGGATCAG+TGG - chr3_2:70813578-70813597 Msa0421790:exon 50.0%
CCAGTTGCAAAGTCCAGACA+TGG + chr3_2:70813618-70813637 None:intergenic 50.0%
CCATGTCTGGACTTTGCAAC+TGG - chr3_2:70813615-70813634 Msa0421790:CDS 50.0%
TAGCCCTGAAAGCAAGAGCA+TGG - chr3_2:70813740-70813759 Msa0421790:CDS 50.0%
! AGCCCTGAAAGCAAGAGCAT+GGG - chr3_2:70813741-70813760 Msa0421790:CDS 50.0%
CCGTTGACGTGACAAACAGT+AGG + chr3_2:70813795-70813814 None:intergenic 50.0%
ACTGGGACAGTCGGAAATGT+TGG + chr3_2:70813820-70813839 None:intergenic 50.0%
!!! AGGGAAGCTACGTTTTGGAG+AGG + chr3_2:70814690-70814709 None:intergenic 50.0%
ATTCTCTTGCGTTGGGAGGT+TGG - chr3_2:70815054-70815073 Msa0421790:intron 50.0%
TTCTCTTGCGTTGGGAGGTT+GGG - chr3_2:70815055-70815074 Msa0421790:intron 50.0%
TTGGGTGGGAGGATGAGAAT+TGG - chr3_2:70815716-70815735 Msa0421790:intron 50.0%
GGAGGATGAGAATTGGTTGC+AGG - chr3_2:70815723-70815742 Msa0421790:intron 50.0%
TGCAGACCTTGCATCTAGAC+AGG - chr3_2:70815754-70815773 Msa0421790:intron 50.0%
GGTATGGTGACAGAGCTTCT+TGG - chr3_2:70817607-70817626 Msa0421790:intron 50.0%
GTAGTTGCAGCAGCTGATGA+AGG + chr3_2:70817694-70817713 None:intergenic 50.0%
AACTCCTACAACTCCGACCT+CGG - chr3_2:70817717-70817736 Msa0421790:CDS 50.0%
! TGCCCCAAGGGCATATGCTA+AGG + chr3_2:70817443-70817462 None:intergenic 55.0%
GCAGCAGCTGATGAAGGAGT+AGG + chr3_2:70817688-70817707 None:intergenic 55.0%
GGTCGGAGTTGTAGGAGTTG+CGG + chr3_2:70817716-70817735 None:intergenic 55.0%
GTTCTTGCTGCAGTACCTGC+TGG - chr3_2:70817811-70817830 Msa0421790:CDS 55.0%
CTTGCCGAGGTCGGAGTTGT+AGG + chr3_2:70817724-70817743 None:intergenic 60.0%
TGAACCACCTGTGCTTGCCG+AGG + chr3_2:70817737-70817756 None:intergenic 60.0%
ACTCCGACCTCGGCAAGCAC+AGG - chr3_2:70817727-70817746 Msa0421790:CDS 65.0%
CCACCTGTGCTTGCCGAGGT+CGG + chr3_2:70817733-70817752 None:intergenic 65.0%
CCGACCTCGGCAAGCACAGG+TGG - chr3_2:70817730-70817749 Msa0421790:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 70813227 70818222 70813227 ID=Msa0421790;Name=Msa0421790
chr3_2 mRNA 70813227 70818222 70813227 ID=Msa0421790-mRNA-1;Parent=Msa0421790;Name=Msa0421790-mRNA-1;_AED=0.03;_eAED=0.03;_QI=268|1|1|1|1|1|2|367|192
chr3_2 exon 70813227 70813829 70813227 ID=Msa0421790-mRNA-1:exon:17136;Parent=Msa0421790-mRNA-1
chr3_2 exon 70817612 70818222 70817612 ID=Msa0421790-mRNA-1:exon:17135;Parent=Msa0421790-mRNA-1
chr3_2 five_prime_UTR 70817955 70818222 70817955 ID=Msa0421790-mRNA-1:five_prime_utr;Parent=Msa0421790-mRNA-1
chr3_2 CDS 70817612 70817954 70817612 ID=Msa0421790-mRNA-1:cds;Parent=Msa0421790-mRNA-1
chr3_2 CDS 70813594 70813829 70813594 ID=Msa0421790-mRNA-1:cds;Parent=Msa0421790-mRNA-1
chr3_2 three_prime_UTR 70813227 70813593 70813227 ID=Msa0421790-mRNA-1:three_prime_utr;Parent=Msa0421790-mRNA-1
Gene Sequence

>Msa0421790

ATGAAGAACCAACAACATCAAATGTTTATGTGTCTGTGTGTTTTGGCTCTCATCATAGGTGGCTCTAATGGAGCTGAAGATTTGGCTTCAAAGTGTGGATCAGTGGTTCAAAAAGTGATTCCATGTCTGGACTTTGCAACTGGGAAAGCACCTACACCAAAGAAGGAATGCTGTGATGCAGCTAACAGTATCAAGGCAACGGATCCAGAGTGTTTGTGCTATATCATTCAACAGACTCATAAGGGTAGCCCTGAAAGCAAGAGCATGGGTATTCAGGAAGATAAGCTTCTTCAACTCCCTACTGTTTGTCACGTCAACGGCGCCAACATTTCCGACTGTCCCAAGCTTCTTGGTCTATCTGCAAACTCCCCCGACGCTGCAATCTTTAAAAATGCTTCAAGGACAAATCCTACTCCTTCATCAGCTGCTGCAACTACCGCAACTCCTACAACTCCGACCTCGGCAAGCACAGGTGGTTCATCCAACCTTAGACCTGTCATGATCAACAACGTGATAACGGTGACTTTGGCCATTGTTCTTGCTGCAGTACCTGCTGGATTTATCAGCATTTATACATGA

Protein sequence

>Msa0421790

MKNQQHQMFMCLCVLALIIGGSNGAEDLASKCGSVVQKVIPCLDFATGKAPTPKKECCDAANSIKATDPECLCYIIQQTHKGSPESKSMGIQEDKLLQLPTVCHVNGANISDCPKLLGLSANSPDAAIFKNASRTNPTPSSAAATTATPTTPTSASTGGSSNLRPVMINNVITVTLAIVLAAVPAGFISIYT*