AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0467890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467890 MtrunA17_Chr3g0122441 96.875 192 6 0 1 192 1 192 9.26e-136 377
Msa0467890 MtrunA17_Chr8g0356191 32.450 151 90 5 9 151 12 158 5.70e-16 72.4
Msa0467890 MtrunA17_Chr7g0260061 28.070 114 79 2 1 114 1 111 3.87e-12 62.0
Msa0467890 MtrunA17_Chr5g0395001 28.125 192 113 7 1 191 1 168 3.97e-12 61.6
Msa0467890 MtrunA17_Chr1g0205181 35.714 84 49 1 30 113 26 104 6.24e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467890 AT1G27950.1 49.020 153 71 3 31 183 34 179 1.84e-42 141
Msa0467890 AT2G44290.1 34.395 157 91 7 10 161 13 162 4.99e-18 78.6
Msa0467890 AT2G44300.1 34.615 130 72 6 42 164 45 168 1.78e-14 68.9
Msa0467890 AT1G55260.2 26.829 164 100 6 1 159 44 192 6.12e-13 65.5
Msa0467890 AT1G55260.1 26.829 164 103 6 1 159 44 195 9.94e-13 64.7

Find 86 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACCCATGCTCTTGCTTTC+AGG 0.112193 3_3:-69364784 None:intergenic
TGTAATGGTTTCTCGAATTA+TGG 0.138518 3_3:+69369015 Msa0467890:three_prime_UTR
GCATCACAGCATTCCTTCTT+TGG 0.234849 3_3:-69364691 None:intergenic
AGGAAGTAGTAAAGTATTAT+TGG 0.255709 3_3:+69368934 Msa0467890:three_prime_UTR
CCTCAATCTCACCATTAAAT+AGG 0.265782 3_3:+69364319 Msa0467890:five_prime_UTR
AATTATCACCAACATATTAA+TGG 0.276720 3_3:-69369099 None:intergenic
TGGTCTCGTTTCCTATTTAA+TGG 0.277493 3_3:-69364330 None:intergenic
TCACAATAAAGGCAAATTAA+AGG 0.315377 3_3:-69369056 None:intergenic
AAGCAAGAGCATGGGTATTC+AGG 0.320822 3_3:+69364789 Msa0467890:CDS
CCAACATATTAATGGGAAAC+TGG 0.323379 3_3:-69369091 None:intergenic
CCATGTCTGGACTTTGCAAC+TGG 0.330521 3_3:+69364655 Msa0467890:CDS
GTTTATGTGTCTGTGTGTTT+TGG 0.332428 3_3:+69364558 Msa0467890:CDS
TAAATATATGGTTGTAAGTA+AGG 0.339209 3_3:-69364449 None:intergenic
TTAATATGTTGGTGATAATT+CGG 0.339427 3_3:+69369102 Msa0467890:three_prime_UTR
CTCTAATGGAGCTGAAGATT+TGG 0.343257 3_3:+69364597 Msa0467890:CDS
AAAGTACTGTTATAAATATA+TGG 0.347676 3_3:-69364461 None:intergenic
GATGATGGATCTCTGTATTA+AGG 0.351887 3_3:-69364293 None:intergenic
TAGCAGAAGCTGTGAATTGT+AGG 0.363437 3_3:-69364494 None:intergenic
CTTGCCGAGGTCGGAGTTGT+AGG 0.376495 3_3:-69368745 None:intergenic
GTAATGGTTTCTCGAATTAT+GGG 0.376913 3_3:+69369016 Msa0467890:three_prime_UTR
AAGTAATAAGTTCACAATAA+AGG 0.379954 3_3:-69369067 None:intergenic
CTCATCATAGGTGGCTCTAA+TGG 0.381692 3_3:+69364583 Msa0467890:CDS
TTGTCTCTGCTGCTGTGTAA+TGG 0.386544 3_3:+69369000 Msa0467890:three_prime_UTR
TGTTGATCATGACAGGTCTA+AGG 0.387679 3_3:-69368786 None:intergenic
TACCCATGCTCTTGCTTTCA+GGG 0.394358 3_3:-69364783 None:intergenic
ATTATCACCAACATATTAAT+GGG 0.396469 3_3:-69369098 None:intergenic
CACCTAACCACAGAGAAATA+TGG 0.399941 3_3:+69368909 Msa0467890:three_prime_UTR
TCCTCTTTGTCTTGGAAGAA+TGG 0.400860 3_3:+69369210 Msa0467890:three_prime_UTR
ACATAAACATTTGATGTTGT+TGG 0.404273 3_3:-69364543 None:intergenic
GGTATGGTGACAGAGCTTCT+TGG 0.409463 3_3:+69368631 Msa0467890:intron
CAACGTGATAACGGTGACTT+TGG 0.415623 3_3:+69368807 Msa0467890:CDS
AAGGAGAGAATAGGAAGTAC+AGG 0.419692 3_3:-69364386 None:intergenic
CCTATTTAATGGTGAGATTG+AGG 0.420416 3_3:-69364319 None:intergenic
GTTCTTGCTGCAGTACCTGC+TGG 0.431862 3_3:+69368835 Msa0467890:CDS
TATCATTCAACAGACTCATA+AGG 0.436377 3_3:+69364756 Msa0467890:CDS
AACCATATTTCTCTGTGGTT+AGG 0.446523 3_3:-69368911 None:intergenic
TTATCAGCATTTATACATGA+TGG 0.456328 3_3:+69368860 Msa0467890:CDS
CCAGTTTCCCATTAATATGT+TGG 0.459592 3_3:+69369091 Msa0467890:three_prime_UTR
ATCATTCAACAGACTCATAA+GGG 0.476714 3_3:+69364757 Msa0467890:CDS
GGTAGGAAGAAGGAGAGAAT+AGG 0.479018 3_3:-69364395 None:intergenic
GTGAGATTGAGGAGTGATGA+TGG 0.481827 3_3:-69364308 None:intergenic
CAGCATTCCTTCTTTGGTGT+AGG 0.481891 3_3:-69364685 None:intergenic
ATCACGTTGTTGATCATGAC+AGG 0.490311 3_3:-69368793 None:intergenic
AGCATTTATACATGATGGGT+TGG 0.505960 3_3:+69368865 Msa0467890:exon
TATCAGCATTTATACATGAT+GGG 0.509940 3_3:+69368861 Msa0467890:exon
AGTAGTAAAGTATTATTGGT+TGG 0.514371 3_3:+69368938 Msa0467890:three_prime_UTR
TAGGAAGTACAGGTGAGGAA+AGG 0.518986 3_3:-69364376 None:intergenic
AGAAGAAGAAGGTAGGAAGA+AGG 0.526729 3_3:-69364405 None:intergenic
GCAAATTAAAGGCAACATCA+TGG 0.529197 3_3:-69369045 None:intergenic
TCCATTCTTCCAAGACAAAG+AGG 0.533407 3_3:-69369211 None:intergenic
CCAGTTGCAAAGTCCAGACA+TGG 0.534963 3_3:-69364655 None:intergenic
CATGATCAACAACGTGATAA+CGG 0.539145 3_3:+69368798 Msa0467890:CDS
GGCTTCAAAGTGTGGATCAG+TGG 0.542878 3_3:+69364618 Msa0467890:CDS
GAAGATTTGGCTTCAAAGTG+TGG 0.543294 3_3:+69364610 Msa0467890:CDS
CATGTCTGGACTTTGCAACT+GGG 0.544788 3_3:+69364656 Msa0467890:CDS
GAAAGCACCTACACCAAAGA+AGG 0.545842 3_3:+69364678 Msa0467890:CDS
GTAGTTGCAGCAGCTGATGA+AGG 0.549439 3_3:-69368715 None:intergenic
CCACCTGTGCTTGCCGAGGT+CGG 0.550705 3_3:-69368754 None:intergenic
ACTGGGACAGTCGGAAATGT+TGG 0.550714 3_3:-69364857 None:intergenic
AACCACAGAGAAATATGGTT+AGG 0.552832 3_3:+69368914 Msa0467890:three_prime_UTR
ATGATATAGCACAAACACTC+TGG 0.553006 3_3:-69364739 None:intergenic
AACTCCTACAACTCCGACCT+CGG 0.556736 3_3:+69368741 Msa0467890:CDS
ACTCCGACCTCGGCAAGCAC+AGG 0.560509 3_3:+69368751 Msa0467890:CDS
ATCAAGTCTCAAGAAGAAGA+AGG 0.562459 3_3:-69364416 None:intergenic
ATTAAACTTACTGGGACAGT+CGG 0.571110 3_3:-69364866 None:intergenic
TAGCCCTGAAAGCAAGAGCA+TGG 0.574374 3_3:+69364780 Msa0467890:CDS
TGATGCAGCTAACAGTATCA+AGG 0.574408 3_3:+69364708 Msa0467890:CDS
CCGACCTCGGCAAGCACAGG+TGG 0.579084 3_3:+69368754 Msa0467890:CDS
CCGTTGACGTGACAAACAGT+AGG 0.581377 3_3:-69364832 None:intergenic
GCAGCAGCTGATGAAGGAGT+AGG 0.585517 3_3:-69368709 None:intergenic
AGTCTCAAGAAGAAGAAGGT+AGG 0.587932 3_3:-69364412 None:intergenic
GAGAATAGGAAGTACAGGTG+AGG 0.596929 3_3:-69364381 None:intergenic
TTTAAAGATTGCAGCGTCGG+GGG 0.597687 3_3:-69368668 None:intergenic
AGCTAACAGTATCAAGGCAA+CGG 0.604523 3_3:+69364714 Msa0467890:CDS
CTCTGTATTAAGGCACTCCA+CGG 0.608725 3_3:-69364283 None:intergenic
TAAATGCTGATAAATCCAGC+AGG 0.610193 3_3:-69368850 None:intergenic
TTCCTAACCATATTTCTCTG+TGG 0.618262 3_3:-69368916 None:intergenic
ATAAGGACGTTTAGCTACCG+TGG 0.626164 3_3:+69364266 None:intergenic
AGCCCTGAAAGCAAGAGCAT+GGG 0.629636 3_3:+69364781 Msa0467890:CDS
GATCATGACAGGTCTAAGGT+TGG 0.632709 3_3:-69368782 None:intergenic
TGAACCACCTGTGCTTGCCG+AGG 0.642075 3_3:-69368758 None:intergenic
GGTCGGAGTTGTAGGAGTTG+CGG 0.642214 3_3:-69368737 None:intergenic
CGTTGACGTGACAAACAGTA+GGG 0.644084 3_3:-69364831 None:intergenic
AGGTACTGCAGCAAGAACAA+TGG 0.653525 3_3:-69368830 None:intergenic
CCTACTGTTTGTCACGTCAA+CGG 0.678772 3_3:+69364832 Msa0467890:CDS
GATGAGTAAATGCAATAGTG+TGG 0.690328 3_3:-69364350 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATACTATATAAAAATGT+TGG - chr3_3:69367569-69367588 None:intergenic 10.0%
!! TTTATATAGTATATAAAACA+AGG + chr3_3:69367574-69367593 Msa0467890:intron 10.0%
!! TTATATAGTATATAAAACAA+GGG + chr3_3:69367575-69367594 Msa0467890:intron 10.0%
!!! ATTTATTGAGATTTTTTTTA+TGG + chr3_3:69369187-69369206 Msa0467890:three_prime_UTR 10.0%
!!! AAAGTACTGTTATAAATATA+TGG - chr3_3:69364464-69364483 None:intergenic 15.0%
!! ATATATGACATTAATTTATC+AGG - chr3_3:69364944-69364963 None:intergenic 15.0%
!!! TTTTTTTTGTTACACAATAA+TGG + chr3_3:69365037-69365056 Msa0467890:intron 15.0%
!!! CTTATTATATTTGATTTTTC+CGG + chr3_3:69365472-69365491 Msa0467890:intron 15.0%
!! ATTTAATAAAATAAGGTTAC+TGG - chr3_3:69365585-69365604 None:intergenic 15.0%
!! AAAAATAAATGTATTTGAAC+TGG - chr3_3:69365708-69365727 None:intergenic 15.0%
!! TTTGTTTATAAGAAAAACTT+TGG - chr3_3:69365736-69365755 None:intergenic 15.0%
!!! TTTTTTGACTAAATAAAATG+TGG - chr3_3:69365884-69365903 None:intergenic 15.0%
!!! TAGAGTTTTCTAATAAATTA+TGG + chr3_3:69366806-69366825 Msa0467890:intron 15.0%
!!! AGAGTTTTCTAATAAATTAT+GGG + chr3_3:69366807-69366826 Msa0467890:intron 15.0%
!!! TAAGAAAAGATATCTTTTTT+AGG - chr3_3:69367438-69367457 None:intergenic 15.0%
!!! GAAAAGATAATTTTTAACAT+AGG + chr3_3:69367669-69367688 Msa0467890:intron 15.0%
!!! AATTTTTAACATAGGTTTTA+AGG + chr3_3:69367677-69367696 Msa0467890:intron 15.0%
!!! ATTAGTGTATAATCATTTTT+TGG + chr3_3:69368007-69368026 Msa0467890:intron 15.0%
!! AAAGAATCAAAGTATATATT+GGG - chr3_3:69368117-69368136 None:intergenic 15.0%
!! CATATATTTAACATAATGAA+AGG - chr3_3:69368226-69368245 None:intergenic 15.0%
!!! TTTGGGTTAATTTAAAAAAA+AGG + chr3_3:69368296-69368315 Msa0467890:intron 15.0%
!! TTGGGTTAATTTAAAAAAAA+GGG + chr3_3:69368297-69368316 Msa0467890:intron 15.0%
!!! AAAACGCAATATTTTTTTTT+AGG - chr3_3:69368502-69368521 None:intergenic 15.0%
!! ACATATAATAACATGAATAT+TGG + chr3_3:69368610-69368629 Msa0467890:intron 15.0%
!! TAAATATATGGTTGTAAGTA+AGG - chr3_3:69364452-69364471 None:intergenic 20.0%
!! AAGGAAAAATTAAACTTACT+GGG - chr3_3:69364877-69364896 None:intergenic 20.0%
!! AAAGGAAAAATTAAACTTAC+TGG - chr3_3:69364878-69364897 None:intergenic 20.0%
!! TAGCAATTAACGATAAAAAA+AGG - chr3_3:69364896-69364915 None:intergenic 20.0%
!! CTATTACATAAAACTATGAT+AGG + chr3_3:69365124-69365143 Msa0467890:intron 20.0%
!!! ATATCTAATTATCTCTTTTG+TGG + chr3_3:69365603-69365622 Msa0467890:intron 20.0%
!! AAAACTTATGTTAAAGTTTG+TGG + chr3_3:69366199-69366218 Msa0467890:intron 20.0%
!!! TGTAATTTTAGAAACATGAT+AGG + chr3_3:69366735-69366754 Msa0467890:intron 20.0%
!! TAATTGCGCAAAATAAATTA+AGG + chr3_3:69366769-69366788 Msa0467890:intron 20.0%
!! ATTTATTAGAAAACTCTAAC+CGG - chr3_3:69366804-69366823 None:intergenic 20.0%
!!! AAGACATAGTTTCTTTTTTT+GGG - chr3_3:69366871-69366890 None:intergenic 20.0%
!!! TTTTTGCATTGAAAATTGTA+AGG - chr3_3:69366928-69366947 None:intergenic 20.0%
!! GATTTCTGACATATAATTTA+TGG - chr3_3:69367003-69367022 None:intergenic 20.0%
!! TTAATGAGATCATTAAGTAA+AGG - chr3_3:69367123-69367142 None:intergenic 20.0%
!!! ATGGAGTATTAATTTTACAT+TGG + chr3_3:69367228-69367247 Msa0467890:intron 20.0%
!!! TAAGAAAAGATTCCTTTTTT+AGG + chr3_3:69367349-69367368 Msa0467890:intron 20.0%
!! TTATTCAATGAACCTAAAAA+AGG - chr3_3:69367364-69367383 None:intergenic 20.0%
!! TTAAGATGATAAAAGTTTGT+GGG - chr3_3:69367988-69368007 None:intergenic 20.0%
!! ATTAAGATGATAAAAGTTTG+TGG - chr3_3:69367989-69368008 None:intergenic 20.0%
!! GAAAGAATCAAAGTATATAT+TGG - chr3_3:69368118-69368137 None:intergenic 20.0%
!! AATATTCCATCAATTATTCT+TGG + chr3_3:69368273-69368292 Msa0467890:intron 20.0%
!!! CTATGATAAACTTCTAATTT+TGG - chr3_3:69368362-69368381 None:intergenic 20.0%
!! TAATAACATGAATATTGGTA+TGG + chr3_3:69368615-69368634 Msa0467890:intron 20.0%
!! AAGTAATAAGTTCACAATAA+AGG - chr3_3:69369070-69369089 None:intergenic 20.0%
!! ATTATCACCAACATATTAAT+GGG - chr3_3:69369101-69369120 None:intergenic 20.0%
!! AATTATCACCAACATATTAA+TGG - chr3_3:69369102-69369121 None:intergenic 20.0%
!!! TTAATATGTTGGTGATAATT+CGG + chr3_3:69369102-69369121 Msa0467890:three_prime_UTR 20.0%
!!! ATTCGGATTTAATTTCTTTT+TGG + chr3_3:69369119-69369138 Msa0467890:three_prime_UTR 20.0%
! ACATAAACATTTGATGTTGT+TGG - chr3_3:69364546-69364565 None:intergenic 25.0%
! ATGCATGATATTGTACATAT+TGG + chr3_3:69364962-69364981 Msa0467890:intron 25.0%
! TGCATGATATTGTACATATT+GGG + chr3_3:69364963-69364982 Msa0467890:intron 25.0%
! ACAATAATGGTTCCAATTTA+CGG + chr3_3:69365050-69365069 Msa0467890:intron 25.0%
! TAGACTTATATCACAATTTC+AGG + chr3_3:69365177-69365196 Msa0467890:intron 25.0%
! GTTTATTGCATATTTGATGT+CGG + chr3_3:69365315-69365334 Msa0467890:intron 25.0%
!! TTTTAACAAACCGTAATGTT+TGG + chr3_3:69365397-69365416 Msa0467890:intron 25.0%
! TTTAACAAACCGTAATGTTT+GGG + chr3_3:69365398-69365417 Msa0467890:intron 25.0%
!! CTCTTTTAAATAAAATCCGA+GGG - chr3_3:69365659-69365678 None:intergenic 25.0%
!! TCTCTTTTAAATAAAATCCG+AGG - chr3_3:69365660-69365679 None:intergenic 25.0%
!! GTATAGGAGTATAAACATAA+GGG - chr3_3:69365799-69365818 None:intergenic 25.0%
!! TGTATAGGAGTATAAACATA+AGG - chr3_3:69365800-69365819 None:intergenic 25.0%
!! ACTACAAATGACACTATTTT+TGG + chr3_3:69366443-69366462 Msa0467890:intron 25.0%
!!! TTGGTAGATATTTTTGTTGT+TGG + chr3_3:69366462-69366481 Msa0467890:intron 25.0%
! TTGCGATAACTATTATAGAT+GGG + chr3_3:69366487-69366506 Msa0467890:intron 25.0%
! CCTAGAAAAGAAAAGAAAAT+TGG - chr3_3:69366679-69366698 None:intergenic 25.0%
!! CCAATTTTCTTTTCTTTTCT+AGG + chr3_3:69366676-69366695 Msa0467890:intron 25.0%
!!! CAAGACATAGTTTCTTTTTT+TGG - chr3_3:69366872-69366891 None:intergenic 25.0%
! ATTGTTTAAGCATCTAAAAG+TGG - chr3_3:69366954-69366973 None:intergenic 25.0%
!! AACATTTAAGACATTGTTGT+TGG - chr3_3:69367081-69367100 None:intergenic 25.0%
!!! TCTTTTCTTATATTTGAGAC+CGG - chr3_3:69367448-69367467 None:intergenic 25.0%
!!! TCTTTTCTTATATTTGAGAC+CGG + chr3_3:69367448-69367467 Msa0467890:intron 25.0%
! ATGCTAATACATGTTAATGT+TGG - chr3_3:69367503-69367522 None:intergenic 25.0%
!! CTAATATATGCTCTAAATGT+TGG - chr3_3:69367540-69367559 None:intergenic 25.0%
!!! AAAAGCTAACTTGTGTTTTT+AGG + chr3_3:69367598-69367617 Msa0467890:intron 25.0%
!!! AAAGCTAACTTGTGTTTTTA+GGG + chr3_3:69367599-69367618 Msa0467890:intron 25.0%
! TAAGATGATAAAAGTTTGTG+GGG - chr3_3:69367987-69368006 None:intergenic 25.0%
!!! TCATGGATGATAGTTTTAAA+AGG - chr3_3:69368564-69368583 None:intergenic 25.0%
!! CAATCTTTAAAAATGCTTCA+AGG + chr3_3:69368680-69368699 Msa0467890:CDS 25.0%
! TTATCAGCATTTATACATGA+TGG + chr3_3:69368860-69368879 Msa0467890:CDS 25.0%
! TATCAGCATTTATACATGAT+GGG + chr3_3:69368861-69368880 Msa0467890:exon 25.0%
!! AGGAAGTAGTAAAGTATTAT+TGG + chr3_3:69368934-69368953 Msa0467890:three_prime_UTR 25.0%
!! AGTAGTAAAGTATTATTGGT+TGG + chr3_3:69368938-69368957 Msa0467890:three_prime_UTR 25.0%
! TCACAATAAAGGCAAATTAA+AGG - chr3_3:69369059-69369078 None:intergenic 25.0%
TATCATTCAACAGACTCATA+AGG + chr3_3:69364756-69364775 Msa0467890:CDS 30.0%
ATCATTCAACAGACTCATAA+GGG + chr3_3:69364757-69364776 Msa0467890:CDS 30.0%
ATATGCATGAAACCGTAAAT+TGG - chr3_3:69365065-69365084 None:intergenic 30.0%
!! CTATCATATACGTTTGTTGT+CGG - chr3_3:69365213-69365232 None:intergenic 30.0%
TTGTTCACTAAAATTGACAC+CGG - chr3_3:69365494-69365513 None:intergenic 30.0%
! TCTAATTATCTCTTTTGTGG+TGG + chr3_3:69365606-69365625 Msa0467890:intron 30.0%
! TTTCCCTTTCTGACATTTTT+AGG + chr3_3:69365960-69365979 Msa0467890:intron 30.0%
GTTGCGATAACTATTATAGA+TGG + chr3_3:69366486-69366505 Msa0467890:intron 30.0%
TGCGATAACTATTATAGATG+GGG + chr3_3:69366488-69366507 Msa0467890:intron 30.0%
AATGACCTGTCATCTATATT+GGG + chr3_3:69366531-69366550 Msa0467890:intron 30.0%
ATTGATATGCGAACTAATGA+AGG - chr3_3:69366643-69366662 None:intergenic 30.0%
GTCAGAAATCTTATGTATAG+AGG + chr3_3:69367013-69367032 Msa0467890:intron 30.0%
TCTTATGTATAGAGGAACAA+AGG + chr3_3:69367021-69367040 Msa0467890:intron 30.0%
ATTCTCTAACATGCATTCTT+AGG - chr3_3:69367204-69367223 None:intergenic 30.0%
TGCATGTTAGAGAATTCAAA+TGG + chr3_3:69367209-69367228 Msa0467890:intron 30.0%
!!! GTGTGAGTGATTTGTTTTAT+GGG - chr3_3:69367765-69367784 None:intergenic 30.0%
!!! AGTGTGAGTGATTTGTTTTA+TGG - chr3_3:69367766-69367785 None:intergenic 30.0%
AACAAATCACTCACACTAAA+TGG + chr3_3:69367769-69367788 Msa0467890:intron 30.0%
TATAAATACCCAACTCATTC+TGG + chr3_3:69368200-69368219 Msa0467890:intron 30.0%
TCCATCAATTATTCTTGGTT+TGG + chr3_3:69368278-69368297 Msa0467890:intron 30.0%
CCATCAATTATTCTTGGTTT+GGG + chr3_3:69368279-69368298 Msa0467890:intron 30.0%
! TCTTGTTATCTTGTGTCTTA+AGG + chr3_3:69368320-69368339 Msa0467890:intron 30.0%
! CTTGTTATCTTGTGTCTTAA+GGG + chr3_3:69368321-69368340 Msa0467890:intron 30.0%
TGTCATTAGCAACTTTATCA+TGG - chr3_3:69368581-69368600 None:intergenic 30.0%
!! ATTTTTAAAGATTGCAGCGT+CGG - chr3_3:69368674-69368693 None:intergenic 30.0%
TGTAATGGTTTCTCGAATTA+TGG + chr3_3:69369015-69369034 Msa0467890:three_prime_UTR 30.0%
GTAATGGTTTCTCGAATTAT+GGG + chr3_3:69369016-69369035 Msa0467890:three_prime_UTR 30.0%
!! GATGATGGATCTCTGTATTA+AGG - chr3_3:69364296-69364315 None:intergenic 35.0%
CCTATTTAATGGTGAGATTG+AGG - chr3_3:69364322-69364341 None:intergenic 35.0%
CCTCAATCTCACCATTAAAT+AGG + chr3_3:69364319-69364338 Msa0467890:five_prime_UTR 35.0%
TGGTCTCGTTTCCTATTTAA+TGG - chr3_3:69364333-69364352 None:intergenic 35.0%
GATGAGTAAATGCAATAGTG+TGG - chr3_3:69364353-69364372 None:intergenic 35.0%
ATCAAGTCTCAAGAAGAAGA+AGG - chr3_3:69364419-69364438 None:intergenic 35.0%
! GTTTATGTGTCTGTGTGTTT+TGG + chr3_3:69364558-69364577 Msa0467890:CDS 35.0%
TCAAAAAGTGATTCCATGTC+TGG + chr3_3:69364642-69364661 Msa0467890:CDS 35.0%
ATGATATAGCACAAACACTC+TGG - chr3_3:69364742-69364761 None:intergenic 35.0%
ATTAAACTTACTGGGACAGT+CGG - chr3_3:69364869-69364888 None:intergenic 35.0%
! TGATCGACTTAGTTAGAGTA+CGG - chr3_3:69365237-69365256 None:intergenic 35.0%
ATTATCTCTAAACACTCCCT+CGG + chr3_3:69365640-69365659 Msa0467890:intron 35.0%
ATAACTCTATGCGTGTGTAT+AGG - chr3_3:69365815-69365834 None:intergenic 35.0%
! TACAAAAGTACAGTTTGTCC+GGG - chr3_3:69365838-69365857 None:intergenic 35.0%
! CTACAAAAGTACAGTTTGTC+CGG - chr3_3:69365839-69365858 None:intergenic 35.0%
AAATGTCAGAAAGGGAAAAG+AGG - chr3_3:69365958-69365977 None:intergenic 35.0%
AGGCCTAAAAATGTCAGAAA+GGG - chr3_3:69365966-69365985 None:intergenic 35.0%
! GTTTCTGCAATTTTCACAAG+AGG - chr3_3:69365986-69366005 None:intergenic 35.0%
TGTTCTTAATCATCGACAAG+AGG - chr3_3:69366013-69366032 None:intergenic 35.0%
GAATGACCTGTCATCTATAT+TGG + chr3_3:69366530-69366549 Msa0467890:intron 35.0%
ATTTAACCTGTCTAGATGCA+AGG - chr3_3:69366596-69366615 None:intergenic 35.0%
TTGCATCTAGACAGGTTAAA+TGG + chr3_3:69366595-69366614 Msa0467890:intron 35.0%
TGCATCTAGACAGGTTAAAT+GGG + chr3_3:69366596-69366615 Msa0467890:intron 35.0%
TAAATTAAGGTCATGCTAGC+CGG + chr3_3:69366782-69366801 Msa0467890:intron 35.0%
TTCCTTAAACAATGCCCTTA+GGG - chr3_3:69366848-69366867 None:intergenic 35.0%
AATGCTAACAAGTGTCCTAA+GGG - chr3_3:69366978-69366997 None:intergenic 35.0%
AAATGCTAACAAGTGTCCTA+AGG - chr3_3:69366979-69366998 None:intergenic 35.0%
! TTCTTATATTTGAGACCGGA+GGG - chr3_3:69367452-69367471 None:intergenic 35.0%
! TTTCTTATATTTGAGACCGG+AGG - chr3_3:69367451-69367470 None:intergenic 35.0%
! TTTCTTATATTTGAGACCGG+AGG + chr3_3:69367451-69367470 Msa0467890:intron 35.0%
! TTCTTATATTTGAGACCGGA+GGG + chr3_3:69367452-69367471 Msa0467890:intron 35.0%
TATAATGCTAATACTCCCTC+CGG - chr3_3:69367470-69367489 None:intergenic 35.0%
!!! ACTTAGACTAGCTTCTTTTC+AGG - chr3_3:69368140-69368159 None:intergenic 35.0%
CCCAAACCAAGAATAATTGA+TGG - chr3_3:69368282-69368301 None:intergenic 35.0%
AATTCCTTAGCATATGTCCT+TGG + chr3_3:69368458-69368477 Msa0467890:intron 35.0%
ATTCCTTAGCATATGTCCTT+GGG + chr3_3:69368459-69368478 Msa0467890:intron 35.0%
AAATATTAACATGTGCCCCA+AGG - chr3_3:69368478-69368497 None:intergenic 35.0%
!! TTTTTAAAGATTGCAGCGTC+GGG - chr3_3:69368673-69368692 None:intergenic 35.0%
CATGATCAACAACGTGATAA+CGG + chr3_3:69368798-69368817 Msa0467890:CDS 35.0%
TAAATGCTGATAAATCCAGC+AGG - chr3_3:69368853-69368872 None:intergenic 35.0%
!! AGCATTTATACATGATGGGT+TGG + chr3_3:69368865-69368884 Msa0467890:exon 35.0%
AACCATATTTCTCTGTGGTT+AGG - chr3_3:69368914-69368933 None:intergenic 35.0%
AACCACAGAGAAATATGGTT+AGG + chr3_3:69368914-69368933 Msa0467890:three_prime_UTR 35.0%
TTCCTAACCATATTTCTCTG+TGG - chr3_3:69368919-69368938 None:intergenic 35.0%
!! CTGCATATCTGTTTTTCTGT+AGG + chr3_3:69368974-69368993 Msa0467890:three_prime_UTR 35.0%
GCAAATTAAAGGCAACATCA+TGG - chr3_3:69369048-69369067 None:intergenic 35.0%
CCAACATATTAATGGGAAAC+TGG - chr3_3:69369094-69369113 None:intergenic 35.0%
CCAGTTTCCCATTAATATGT+TGG + chr3_3:69369091-69369110 Msa0467890:three_prime_UTR 35.0%
! TTTTATGGTCCTCTTTGTCT+TGG + chr3_3:69369202-69369221 Msa0467890:three_prime_UTR 35.0%
! AAGGAGAGAATAGGAAGTAC+AGG - chr3_3:69364389-69364408 None:intergenic 40.0%
AGAAGAAGAAGGTAGGAAGA+AGG - chr3_3:69364408-69364427 None:intergenic 40.0%
AGTCTCAAGAAGAAGAAGGT+AGG - chr3_3:69364415-69364434 None:intergenic 40.0%
TAGCAGAAGCTGTGAATTGT+AGG - chr3_3:69364497-69364516 None:intergenic 40.0%
!!! TGTGTTTTGGCTCTCATCAT+AGG + chr3_3:69364571-69364590 Msa0467890:CDS 40.0%
CTCTAATGGAGCTGAAGATT+TGG + chr3_3:69364597-69364616 Msa0467890:CDS 40.0%
! GAAGATTTGGCTTCAAAGTG+TGG + chr3_3:69364610-69364629 Msa0467890:CDS 40.0%
TGATGCAGCTAACAGTATCA+AGG + chr3_3:69364708-69364727 Msa0467890:CDS 40.0%
AGCTAACAGTATCAAGGCAA+CGG + chr3_3:69364714-69364733 Msa0467890:CDS 40.0%
TATTGTGAGAGAGGGAGAAT+AGG - chr3_3:69365002-69365021 None:intergenic 40.0%
TTCTCCCTCTCTCACAATAA+TGG + chr3_3:69365003-69365022 Msa0467890:intron 40.0%
GTGACCATTATTGTGAGAGA+GGG - chr3_3:69365010-69365029 None:intergenic 40.0%
TGTGACCATTATTGTGAGAG+AGG - chr3_3:69365011-69365030 None:intergenic 40.0%
! GATCGACTTAGTTAGAGTAC+GGG - chr3_3:69365236-69365255 None:intergenic 40.0%
CTACACAAGCCCAAACATTA+CGG - chr3_3:69365410-69365429 None:intergenic 40.0%
! ACATAAGGGAAGCTACGTTT+TGG - chr3_3:69365785-69365804 None:intergenic 40.0%
CAGAAAGGGAAAAGAGGATA+TGG - chr3_3:69365952-69365971 None:intergenic 40.0%
GAGGCCTAAAAATGTCAGAA+AGG - chr3_3:69365967-69365986 None:intergenic 40.0%
TTAATCATCGACAAGAGGCA+GGG - chr3_3:69366008-69366027 None:intergenic 40.0%
CCAACGCAAGAGAATATTGT+GGG - chr3_3:69366139-69366158 None:intergenic 40.0%
CCACAATATTCTCTTGCGTT+GGG + chr3_3:69366137-69366156 Msa0467890:intron 40.0%
TGACAGGTCATTCAAGATTG+AGG - chr3_3:69366523-69366542 None:intergenic 40.0%
ACCTGTCATCTATATTGGGT+GGG + chr3_3:69366535-69366554 Msa0467890:intron 40.0%
ATGCGAACTAATGAAGGCAA+TGG - chr3_3:69366637-69366656 None:intergenic 40.0%
GTTCCTTAAACAATGCCCTT+AGG - chr3_3:69366849-69366868 None:intergenic 40.0%
GATGCTTAAACAATGCCCTT+AGG + chr3_3:69366960-69366979 Msa0467890:intron 40.0%
TCTTTAACATGTACTCCCTC+CGG + chr3_3:69367317-69367336 Msa0467890:intron 40.0%
!!! CAGACTCAAGTTTTTTCACG+AGG + chr3_3:69367823-69367842 Msa0467890:intron 40.0%
! TCTTTCGAACGATCGTCTTT+TGG + chr3_3:69367894-69367913 Msa0467890:intron 40.0%
! CTTTCGAACGATCGTCTTTT+GGG + chr3_3:69367895-69367914 Msa0467890:intron 40.0%
ATGAAAGGCCAGAATGAGTT+GGG - chr3_3:69368211-69368230 None:intergenic 40.0%
AATGAAAGGCCAGAATGAGT+TGG - chr3_3:69368212-69368231 None:intergenic 40.0%
AGCAGCAGTAGTAGTATATG+TGG + chr3_3:69368247-69368266 Msa0467890:intron 40.0%
GCAGCAGTAGTAGTATATGT+GGG + chr3_3:69368248-69368267 Msa0467890:intron 40.0%
! TGTCTTAAGGGCACAAGTTA+AGG + chr3_3:69368333-69368352 Msa0467890:intron 40.0%
TTCCTTAGCATATGTCCTTG+GGG + chr3_3:69368460-69368479 Msa0467890:intron 40.0%
!! TTTTAAAGATTGCAGCGTCG+GGG - chr3_3:69368672-69368691 None:intergenic 40.0%
TGTTGATCATGACAGGTCTA+AGG - chr3_3:69368789-69368808 None:intergenic 40.0%
ATCACGTTGTTGATCATGAC+AGG - chr3_3:69368796-69368815 None:intergenic 40.0%
CACCTAACCACAGAGAAATA+TGG + chr3_3:69368909-69368928 Msa0467890:three_prime_UTR 40.0%
TCCTCTTTGTCTTGGAAGAA+TGG + chr3_3:69369210-69369229 Msa0467890:three_prime_UTR 40.0%
TCCATTCTTCCAAGACAAAG+AGG - chr3_3:69369214-69369233 None:intergenic 40.0%
! CTCTGTATTAAGGCACTCCA+CGG - chr3_3:69364286-69364305 None:intergenic 45.0%
GTGAGATTGAGGAGTGATGA+TGG - chr3_3:69364311-69364330 None:intergenic 45.0%
! TAGGAAGTACAGGTGAGGAA+AGG - chr3_3:69364379-69364398 None:intergenic 45.0%
! GAGAATAGGAAGTACAGGTG+AGG - chr3_3:69364384-69364403 None:intergenic 45.0%
GGTAGGAAGAAGGAGAGAAT+AGG - chr3_3:69364398-69364417 None:intergenic 45.0%
!!! GTTTTGGCTCTCATCATAGG+TGG + chr3_3:69364574-69364593 Msa0467890:CDS 45.0%
!! CTCATCATAGGTGGCTCTAA+TGG + chr3_3:69364583-69364602 Msa0467890:CDS 45.0%
CATGTCTGGACTTTGCAACT+GGG + chr3_3:69364656-69364675 Msa0467890:CDS 45.0%
!! GAAAGCACCTACACCAAAGA+AGG + chr3_3:69364678-69364697 Msa0467890:CDS 45.0%
! CAGCATTCCTTCTTTGGTGT+AGG - chr3_3:69364688-69364707 None:intergenic 45.0%
GCATCACAGCATTCCTTCTT+TGG - chr3_3:69364694-69364713 None:intergenic 45.0%
TACCCATGCTCTTGCTTTCA+GGG - chr3_3:69364786-69364805 None:intergenic 45.0%
ATACCCATGCTCTTGCTTTC+AGG - chr3_3:69364787-69364806 None:intergenic 45.0%
! AAGCAAGAGCATGGGTATTC+AGG + chr3_3:69364789-69364808 Msa0467890:CDS 45.0%
CGTTGACGTGACAAACAGTA+GGG - chr3_3:69364834-69364853 None:intergenic 45.0%
CCTACTGTTTGTCACGTCAA+CGG + chr3_3:69364832-69364851 Msa0467890:CDS 45.0%
ACACACGCATAGAGTTATCC+CGG + chr3_3:69365817-69365836 Msa0467890:intron 45.0%
CTTAATCATCGACAAGAGGC+AGG - chr3_3:69366009-69366028 None:intergenic 45.0%
CCCACAATATTCTCTTGCGT+TGG + chr3_3:69366136-69366155 Msa0467890:intron 45.0%
CCCAACGCAAGAGAATATTG+TGG - chr3_3:69366140-69366159 None:intergenic 45.0%
CAATATTCTCTTGCGTTGGG+AGG + chr3_3:69366140-69366159 Msa0467890:intron 45.0%
GACCTGTCATCTATATTGGG+TGG + chr3_3:69366534-69366553 Msa0467890:intron 45.0%
TCCCACCCAATATAGATGAC+AGG - chr3_3:69366539-69366558 None:intergenic 45.0%
TGTCATCTATATTGGGTGGG+AGG + chr3_3:69366538-69366557 Msa0467890:intron 45.0%
TCTTGCTAACAAGTGCCCTA+AGG + chr3_3:69366830-69366849 Msa0467890:intron 45.0%
CTTGCTAACAAGTGCCCTAA+GGG + chr3_3:69366831-69366850 Msa0467890:intron 45.0%
!! TGCCCTAAGGGCATTGTTTA+AGG + chr3_3:69366843-69366862 Msa0467890:intron 45.0%
! TTTAAAGATTGCAGCGTCGG+GGG - chr3_3:69368671-69368690 None:intergenic 45.0%
! GATCATGACAGGTCTAAGGT+TGG - chr3_3:69368785-69368804 None:intergenic 45.0%
!! CAACGTGATAACGGTGACTT+TGG + chr3_3:69368807-69368826 Msa0467890:CDS 45.0%
! AGGTACTGCAGCAAGAACAA+TGG - chr3_3:69368833-69368852 None:intergenic 45.0%
TTGTCTCTGCTGCTGTGTAA+TGG + chr3_3:69369000-69369019 Msa0467890:three_prime_UTR 45.0%
!! ATTAGATATTTAATAAAATA+AGG - chr3_3:69365592-69365611 None:intergenic 5.0%
!!! TACTATTAATTTTTTTTTTT+TGG + chr3_3:69366338-69366357 Msa0467890:intron 5.0%
!!! AAATATAAAAATTTAACTTT+TGG - chr3_3:69367720-69367739 None:intergenic 5.0%
GGCTTCAAAGTGTGGATCAG+TGG + chr3_3:69364618-69364637 Msa0467890:CDS 50.0%
CCAGTTGCAAAGTCCAGACA+TGG - chr3_3:69364658-69364677 None:intergenic 50.0%
CCATGTCTGGACTTTGCAAC+TGG + chr3_3:69364655-69364674 Msa0467890:CDS 50.0%
TAGCCCTGAAAGCAAGAGCA+TGG + chr3_3:69364780-69364799 Msa0467890:CDS 50.0%
! AGCCCTGAAAGCAAGAGCAT+GGG + chr3_3:69364781-69364800 Msa0467890:CDS 50.0%
CCGTTGACGTGACAAACAGT+AGG - chr3_3:69364835-69364854 None:intergenic 50.0%
ACTGGGACAGTCGGAAATGT+TGG - chr3_3:69364860-69364879 None:intergenic 50.0%
!!! AGGGAAGCTACGTTTTGGAG+AGG - chr3_3:69365780-69365799 None:intergenic 50.0%
ATTCTCTTGCGTTGGGAGGT+TGG + chr3_3:69366144-69366163 Msa0467890:intron 50.0%
TTCTCTTGCGTTGGGAGGTT+GGG + chr3_3:69366145-69366164 Msa0467890:intron 50.0%
TTGGGTGGGAGGATGAGAAT+TGG + chr3_3:69366549-69366568 Msa0467890:intron 50.0%
GGAGGATGAGAATTGGTTGC+AGG + chr3_3:69366556-69366575 Msa0467890:intron 50.0%
TGCAGACCTTGCATCTAGAC+AGG + chr3_3:69366587-69366606 Msa0467890:intron 50.0%
TGCCCCAAGGACATATGCTA+AGG - chr3_3:69368465-69368484 None:intergenic 50.0%
GGTATGGTGACAGAGCTTCT+TGG + chr3_3:69368631-69368650 Msa0467890:intron 50.0%
GTAGTTGCAGCAGCTGATGA+AGG - chr3_3:69368718-69368737 None:intergenic 50.0%
AACTCCTACAACTCCGACCT+CGG + chr3_3:69368741-69368760 Msa0467890:CDS 50.0%
GCAGCAGCTGATGAAGGAGT+AGG - chr3_3:69368712-69368731 None:intergenic 55.0%
GGTCGGAGTTGTAGGAGTTG+CGG - chr3_3:69368740-69368759 None:intergenic 55.0%
GTTCTTGCTGCAGTACCTGC+TGG + chr3_3:69368835-69368854 Msa0467890:CDS 55.0%
CTTGCCGAGGTCGGAGTTGT+AGG - chr3_3:69368748-69368767 None:intergenic 60.0%
TGAACCACCTGTGCTTGCCG+AGG - chr3_3:69368761-69368780 None:intergenic 60.0%
ACTCCGACCTCGGCAAGCAC+AGG + chr3_3:69368751-69368770 Msa0467890:CDS 65.0%
CCACCTGTGCTTGCCGAGGT+CGG - chr3_3:69368757-69368776 None:intergenic 65.0%
CCGACCTCGGCAAGCACAGG+TGG + chr3_3:69368754-69368773 Msa0467890:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 69364267 69369235 69364267 ID=Msa0467890;Name=Msa0467890
chr3_3 mRNA 69364267 69369235 69364267 ID=Msa0467890-mRNA-1;Parent=Msa0467890;Name=Msa0467890-mRNA-1;_AED=0.03;_eAED=0.03;_QI=268|1|1|1|1|1|2|356|192
chr3_3 exon 69364267 69364877 69364267 ID=Msa0467890-mRNA-1:exon:16395;Parent=Msa0467890-mRNA-1
chr3_3 exon 69368644 69369235 69368644 ID=Msa0467890-mRNA-1:exon:16396;Parent=Msa0467890-mRNA-1
chr3_3 five_prime_UTR 69364267 69364534 69364267 ID=Msa0467890-mRNA-1:five_prime_utr;Parent=Msa0467890-mRNA-1
chr3_3 CDS 69364535 69364877 69364535 ID=Msa0467890-mRNA-1:cds;Parent=Msa0467890-mRNA-1
chr3_3 CDS 69368644 69368879 69368644 ID=Msa0467890-mRNA-1:cds;Parent=Msa0467890-mRNA-1
chr3_3 three_prime_UTR 69368880 69369235 69368880 ID=Msa0467890-mRNA-1:three_prime_utr;Parent=Msa0467890-mRNA-1
Gene Sequence

>Msa0467890

ATGAAGAACCAACAACATCAAATGTTTATGTGTCTGTGTGTTTTGGCTCTCATCATAGGTGGCTCTAATGGAGCTGAAGATTTGGCTTCAAAGTGTGGATCAGTGGTTCAAAAAGTGATTCCATGTCTGGACTTTGCAACTGGGAAAGCACCTACACCAAAGAAGGAATGCTGTGATGCAGCTAACAGTATCAAGGCAACGGATCCAGAGTGTTTGTGCTATATCATTCAACAGACTCATAAGGGTAGCCCTGAAAGCAAGAGCATGGGTATTCAGGAAGATAAGCTTCTTCAACTCCCTACTGTTTGTCACGTCAACGGCGCCAACATTTCCGACTGTCCCAAGCTTCTTGGTCTATCTGCAAACTCCCCCGACGCTGCAATCTTTAAAAATGCTTCAAGGACAAATCCTACTCCTTCATCAGCTGCTGCAACTACCGCAACTCCTACAACTCCGACCTCGGCAAGCACAGGTGGTTCATCCAACCTTAGACCTGTCATGATCAACAACGTGATAACGGTGACTTTGGCCATTGTTCTTGCTGCAGTACCTGCTGGATTTATCAGCATTTATACATGA

Protein sequence

>Msa0467890

MKNQQHQMFMCLCVLALIIGGSNGAEDLASKCGSVVQKVIPCLDFATGKAPTPKKECCDAANSIKATDPECLCYIIQQTHKGSPESKSMGIQEDKLLQLPTVCHVNGANISDCPKLLGLSANSPDAAIFKNASRTNPTPSSAAATTATPTTPTSASTGGSSNLRPVMINNVITVTLAIVLAAVPAGFISIYT*