Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135650 | XP_024631836.2 | 86.967 | 399 | 11 | 1 | 1 | 358 | 1 | 399 | 0.0 | 707 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135650 | A0A396JPB9 | 70.449 | 379 | 71 | 1 | 20 | 357 | 27 | 405 | 0.0 | 563 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0135650 | Msa0645290 | 0.988593 | 1.248668e-174 | -8.615850e-47 |
| Msa0135650 | Msa0767730 | 0.883309 | 5.003597e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135650 | MtrunA17_Chr1g0172731 | 70.449 | 379 | 71 | 1 | 20 | 357 | 27 | 405 | 0.0 | 563 |
| Msa0135650 | MtrunA17_Chr1g0190171 | 69.657 | 379 | 74 | 1 | 20 | 357 | 27 | 405 | 0.0 | 559 |
| Msa0135650 | MtrunA17_Chr2g0321401 | 61.111 | 252 | 51 | 2 | 1 | 205 | 1 | 252 | 2.12e-104 | 308 |
| Msa0135650 | MtrunA17_Chr8g0334561 | 60.079 | 253 | 53 | 2 | 1 | 205 | 1 | 253 | 6.05e-104 | 306 |
| Msa0135650 | MtrunA17_Chr1g0182341 | 44.099 | 322 | 153 | 5 | 13 | 309 | 15 | 334 | 2.03e-86 | 266 |
| Msa0135650 | MtrunA17_Chr2g0285471 | 60.870 | 184 | 31 | 1 | 63 | 205 | 1 | 184 | 1.59e-71 | 221 |
| Msa0135650 | MtrunA17_Chr6g0478531 | 36.494 | 348 | 170 | 7 | 35 | 339 | 15 | 354 | 1.69e-64 | 209 |
| Msa0135650 | MtrunA17_Chr6g0477141 | 37.082 | 329 | 161 | 4 | 12 | 297 | 93 | 418 | 3.49e-62 | 206 |
| Msa0135650 | MtrunA17_Chr8g0391981 | 33.151 | 365 | 181 | 8 | 18 | 337 | 36 | 382 | 8.82e-51 | 174 |
| Msa0135650 | MtrunA17_Chr7g0226311 | 36.025 | 322 | 154 | 7 | 59 | 336 | 9 | 322 | 3.99e-50 | 171 |
| Msa0135650 | MtrunA17_Chr1g0207391 | 34.951 | 309 | 137 | 9 | 45 | 302 | 74 | 369 | 6.29e-47 | 164 |
| Msa0135650 | MtrunA17_Chr3g0140031 | 65.179 | 112 | 32 | 1 | 1 | 105 | 1 | 112 | 1.23e-46 | 154 |
| Msa0135650 | MtrunA17_Chr5g0420851 | 87.931 | 58 | 7 | 0 | 301 | 358 | 1 | 58 | 2.21e-28 | 105 |
| Msa0135650 | MtrunA17_Chr1g0211031 | 60.465 | 86 | 32 | 1 | 273 | 358 | 1 | 84 | 2.30e-27 | 103 |
| Msa0135650 | MtrunA17_Chr8g0370251 | 60.465 | 86 | 32 | 1 | 273 | 358 | 1 | 84 | 2.30e-27 | 103 |
| Msa0135650 | MtrunA17_Chr5g0427241 | 58.824 | 85 | 33 | 1 | 273 | 357 | 1 | 83 | 2.16e-26 | 100 |
| Msa0135650 | MtrunA17_Chr2g0295621 | 58.824 | 85 | 33 | 1 | 273 | 357 | 1 | 83 | 2.42e-26 | 100 |
| Msa0135650 | MtrunA17_Chr7g0267201 | 42.735 | 117 | 59 | 2 | 66 | 174 | 1 | 117 | 8.54e-24 | 96.7 |
| Msa0135650 | MtrunA17_Chr1g0154421 | 36.242 | 149 | 93 | 2 | 14 | 161 | 2 | 149 | 6.35e-20 | 85.1 |
| Msa0135650 | MtrunA17_Chr4g0018411 | 36.364 | 121 | 71 | 3 | 205 | 323 | 10 | 126 | 2.09e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135650 | AT5G41980.1 | 34.218 | 339 | 163 | 9 | 33 | 330 | 15 | 334 | 3.59e-53 | 180 |
| Msa0135650 | AT1G43722.1 | 32.051 | 312 | 157 | 7 | 4 | 267 | 16 | 320 | 3.15e-42 | 150 |
| Msa0135650 | AT5G28730.1 | 34.545 | 220 | 117 | 6 | 33 | 232 | 2 | 214 | 4.48e-33 | 125 |
| Msa0135650 | AT5G35695.1 | 41.912 | 136 | 61 | 4 | 174 | 305 | 30 | 151 | 4.56e-26 | 103 |
| Msa0135650 | AT4G10890.3 | 34.211 | 190 | 90 | 2 | 81 | 270 | 6 | 160 | 2.77e-23 | 101 |
| Msa0135650 | AT4G10890.1 | 34.211 | 190 | 90 | 2 | 81 | 270 | 6 | 160 | 2.77e-23 | 101 |
| Msa0135650 | AT4G10890.2 | 34.211 | 190 | 90 | 2 | 81 | 270 | 6 | 160 | 2.77e-23 | 101 |
| Msa0135650 | AT3G30525.1 | 40.171 | 117 | 61 | 3 | 176 | 284 | 43 | 158 | 6.32e-19 | 83.6 |
Find 62 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTATCACTCAAGTTTA+AGG | 0.112859 | 1_3:-67329044 | Msa0135650:CDS |
| TTATCGTAGACCAGTTAATT+TGG | 0.251482 | 1_3:-67328824 | Msa0135650:CDS |
| TGAGATGAATCCAAATTAAC+TGG | 0.308066 | 1_3:+67328814 | None:intergenic |
| CTCATTGCAAAATGAACTAT+TGG | 0.311324 | 1_3:-67329986 | None:intergenic |
| CCATGGGAACGCCGAAAATC+AGG | 0.316313 | 1_3:+67329093 | None:intergenic |
| CCCCATCGGTGTTGGATAAC+CGG | 0.331584 | 1_3:+67329152 | None:intergenic |
| TTCAAAGTGATCCACGATAT+TGG | 0.339686 | 1_3:-67329512 | Msa0135650:CDS |
| TGCACAATAGAAAGAACTTT+TGG | 0.340416 | 1_3:-67329021 | Msa0135650:CDS |
| TTCTTTAGTGGCTGCACTGA+TGG | 0.377877 | 1_3:-67329922 | Msa0135650:CDS |
| TATTAGAAGGAATGCTGATA+TGG | 0.386332 | 1_3:-67328899 | Msa0135650:CDS |
| CTATACATAACTTTATTAGA+AGG | 0.401801 | 1_3:-67328912 | Msa0135650:CDS |
| TGTAGAACTAGTGAGCTAAC+AGG | 0.402946 | 1_3:-67329864 | Msa0135650:CDS |
| TTCTACCCCTATGTGATTAG+TGG | 0.407094 | 1_3:+67329722 | None:intergenic |
| TGCACTAAATTAGTTGATCA+TGG | 0.412015 | 1_3:-67329753 | Msa0135650:CDS |
| CCAACACCGATGGGGTATCT+TGG | 0.413955 | 1_3:-67329144 | Msa0135650:CDS |
| GCAATGTTCTTACTTGTTGT+TGG | 0.423911 | 1_3:-67329690 | Msa0135650:CDS |
| TACGATAATCATCATGATCA+AGG | 0.435864 | 1_3:+67328839 | None:intergenic |
| GCTGCACTGATGGGTGAGTA+TGG | 0.463587 | 1_3:-67329912 | Msa0135650:CDS |
| TTAATACCTGGAGGAGGATG+TGG | 0.473645 | 1_3:+67329261 | None:intergenic |
| GTGAGCTAACAGGGCATGCA+TGG | 0.475764 | 1_3:-67329854 | Msa0135650:CDS |
| CCAAGATACCCCATCGGTGT+TGG | 0.475954 | 1_3:+67329144 | None:intergenic |
| TTCTTACTTGTTGTTGGACA+TGG | 0.479104 | 1_3:-67329684 | Msa0135650:CDS |
| TTGAGGCTTTATATATTCGA+TGG | 0.486174 | 1_3:+67329566 | None:intergenic |
| TTTAGGTATGTATTATTTGG+TGG | 0.486635 | 1_3:-67329178 | Msa0135650:intron |
| ATGTATTATTTGGTGGATGC+CGG | 0.486645 | 1_3:-67329171 | Msa0135650:CDS |
| CGTCGATTTCAATCGGTATG+AGG | 0.488598 | 1_3:-67328875 | Msa0135650:CDS |
| GCCGGTTATCCAACACCGAT+GGG | 0.518380 | 1_3:-67329153 | Msa0135650:CDS |
| TCTTTAGTGGCTGCACTGAT+GGG | 0.518551 | 1_3:-67329921 | Msa0135650:CDS |
| TTGTTATGAGATGTTTCGAA+TGG | 0.520234 | 1_3:-67329799 | Msa0135650:CDS |
| TGATAACGTTCACATCTGTA+TGG | 0.526253 | 1_3:+67329120 | None:intergenic |
| TAAAGCCCACTAATCACATA+GGG | 0.528574 | 1_3:-67329728 | Msa0135650:CDS |
| TCTACCCCTATGTGATTAGT+GGG | 0.529840 | 1_3:+67329723 | None:intergenic |
| TGAAGTCGTTGTTGCAACAA+TGG | 0.546744 | 1_3:-67328935 | Msa0135650:CDS |
| GATTTGCATTTGTGAGAGCA+TGG | 0.547923 | 1_3:+67329292 | None:intergenic |
| GATGAATCATGTTCGAAACT+CGG | 0.549572 | 1_3:-67328764 | Msa0135650:CDS |
| AACATCTCATAACAACGAGT+TGG | 0.551166 | 1_3:+67329807 | None:intergenic |
| TGCCGGTTATCCAACACCGA+TGG | 0.556028 | 1_3:-67329154 | Msa0135650:CDS |
| TCACATAGGGGTAGAAGAGA+TGG | 0.556124 | 1_3:-67329715 | Msa0135650:CDS |
| CATGGGAACGCCGAAAATCA+GGG | 0.556357 | 1_3:+67329094 | None:intergenic |
| ATATGGACGTCGATTTCAAT+CGG | 0.561835 | 1_3:-67328882 | Msa0135650:CDS |
| TCACAGTTTCTCCTGAGTGT+TGG | 0.566113 | 1_3:+67329631 | None:intergenic |
| GTAATAGAATGATTCAAGAA+AGG | 0.570517 | 1_3:-67329656 | Msa0135650:CDS |
| ACTTGTTGTTGGACATGGAG+TGG | 0.572106 | 1_3:-67329679 | Msa0135650:CDS |
| CTTGTTGTTGGACATGGAGT+GGG | 0.572884 | 1_3:-67329678 | Msa0135650:CDS |
| CAAGAAAGGTTCCAACACTC+AGG | 0.575639 | 1_3:-67329642 | Msa0135650:CDS |
| TTAAAGCCCACTAATCACAT+AGG | 0.582939 | 1_3:-67329729 | Msa0135650:CDS |
| GTTAGCTCACTAGTTCTACA+TGG | 0.598706 | 1_3:+67329867 | None:intergenic |
| ATAATATTAATACCTGGAGG+AGG | 0.608585 | 1_3:+67329255 | None:intergenic |
| TGGGTGAAAGAAGTGTTACA+AGG | 0.613940 | 1_3:-67329834 | Msa0135650:CDS |
| GTAGAACTAGTGAGCTAACA+GGG | 0.616141 | 1_3:-67329863 | Msa0135650:CDS |
| TGAGCTAACAGGGCATGCAT+GGG | 0.618880 | 1_3:-67329853 | Msa0135650:CDS |
| ACGATAATCATCATGATCAA+GGG | 0.621055 | 1_3:+67328840 | None:intergenic |
| AACATGATTCATCTCAGATG+AGG | 0.624817 | 1_3:+67328774 | None:intergenic |
| TCACTGAACAAAGGATCTTG+AGG | 0.628315 | 1_3:+67329549 | None:intergenic |
| GCATGACTATCACTGAACAA+AGG | 0.657979 | 1_3:+67329540 | None:intergenic |
| AATGCTATAGGAGCAATCGA+TGG | 0.684778 | 1_3:-67329477 | Msa0135650:intron |
| GGGTGAAAGAAGTGTTACAA+GGG | 0.685898 | 1_3:-67329833 | Msa0135650:CDS |
| CCGGTTATCCAACACCGATG+GGG | 0.699683 | 1_3:-67329152 | Msa0135650:CDS |
| TATGGACCAAGATACCCCAT+CGG | 0.700535 | 1_3:+67329138 | None:intergenic |
| AAAGCCCACTAATCACATAG+GGG | 0.730444 | 1_3:-67329727 | Msa0135650:CDS |
| GGGAACGCCGAAAATCAGGG+AGG | 0.802967 | 1_3:+67329097 | None:intergenic |
| TGGGTTTGAAAATAACAACG+AGG | 0.807645 | 1_3:-67329073 | Msa0135650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATTTAATTTATTTTT+AGG | - | chr1_3:67329506-67329525 | Msa0135650:CDS | 0.0% |
| !!! | TTATAATTTAATTTATTTTT+AGG | - | chr1_3:67329506-67329525 | Msa0135650:CDS | 0.0% |
| !! | TACTAATAAATAAGTTATAA+AGG | + | chr1_3:67329472-67329491 | None:intergenic | 10.0% |
| !! | TACTAATAAATAAGTTATAA+AGG | + | chr1_3:67329472-67329491 | None:intergenic | 10.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | - | chr1_3:67329520-67329539 | Msa0135650:CDS | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | - | chr1_3:67329520-67329539 | Msa0135650:CDS | 15.0% |
| !! | TAAAGGATAATATTAATACC+TGG | + | chr1_3:67329455-67329474 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | - | chr1_3:67329657-67329676 | Msa0135650:CDS | 20.0% |
| !!! | TGTGTTTTAATTGTGAATTT+AGG | + | chr1_3:67329743-67329762 | None:intergenic | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | - | chr1_3:67329789-67329808 | Msa0135650:CDS | 20.0% |
| !! | TAAAGGATAATATTAATACC+TGG | + | chr1_3:67329455-67329474 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | - | chr1_3:67329657-67329676 | Msa0135650:CDS | 20.0% |
| !!! | TGTGTTTTAATTGTGAATTT+AGG | + | chr1_3:67329743-67329762 | None:intergenic | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | - | chr1_3:67329789-67329808 | Msa0135650:CDS | 20.0% |
| ! | GTGCAAAGTTTATGAAAAAT+AGG | + | chr1_3:67328933-67328952 | None:intergenic | 25.0% |
| ! | GTAATAGAATGATTCAAGAA+AGG | - | chr1_3:67329045-67329064 | Msa0135650:CDS | 25.0% |
| ! | CCTATAGCATTCTTAAAAAA+TGG | + | chr1_3:67329215-67329234 | None:intergenic | 25.0% |
| !!! | CCATTTTTTAAGAATGCTAT+AGG | - | chr1_3:67329212-67329231 | Msa0135650:intron | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | - | chr1_3:67329523-67329542 | Msa0135650:CDS | 25.0% |
| ! | GTGCAAAGTTTATGAAAAAT+AGG | + | chr1_3:67328933-67328952 | None:intergenic | 25.0% |
| ! | GTAATAGAATGATTCAAGAA+AGG | - | chr1_3:67329045-67329064 | Msa0135650:CDS | 25.0% |
| ! | CCTATAGCATTCTTAAAAAA+TGG | + | chr1_3:67329215-67329234 | None:intergenic | 25.0% |
| !!! | CCATTTTTTAAGAATGCTAT+AGG | - | chr1_3:67329212-67329231 | Msa0135650:intron | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | - | chr1_3:67329523-67329542 | Msa0135650:CDS | 25.0% |
| ! | TTTTGAACAAGCTTCTTTAG+TGG | - | chr1_3:67328767-67328786 | Msa0135650:CDS | 30.0% |
| TTGTTATGAGATGTTTCGAA+TGG | - | chr1_3:67328902-67328921 | Msa0135650:CDS | 30.0% | |
| TGCACTAAATTAGTTGATCA+TGG | - | chr1_3:67328948-67328967 | Msa0135650:CDS | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | + | chr1_3:67329138-67329157 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | + | chr1_3:67329203-67329222 | None:intergenic | 30.0% | |
| AGTGACCAAACTAGATTTAT+TGG | - | chr1_3:67329275-67329294 | Msa0135650:CDS | 30.0% | |
| TTCGTCCAATAAATCTAGTT+TGG | + | chr1_3:67329283-67329302 | None:intergenic | 30.0% | |
| AACTAGATTTATTGGACGAA+AGG | - | chr1_3:67329283-67329302 | Msa0135650:CDS | 30.0% | |
| ACTAGATTTATTGGACGAAA+GGG | - | chr1_3:67329284-67329303 | Msa0135650:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | - | chr1_3:67329307-67329326 | Msa0135650:CDS | 30.0% | |
| ! | ACAACCATTACATTTTGTGT+CGG | + | chr1_3:67329314-67329333 | None:intergenic | 30.0% |
| ATGTAATGGTTGTATGTGAT+TGG | - | chr1_3:67329321-67329340 | Msa0135650:CDS | 30.0% | |
| !!! | TGCTTTACTTTTGTTTTAGC+TGG | - | chr1_3:67329350-67329369 | Msa0135650:intron | 30.0% |
| !!! | TTACTTTTGTTTTAGCTGGA+TGG | - | chr1_3:67329354-67329373 | Msa0135650:intron | 30.0% |
| !!! | TACTTTTGTTTTAGCTGGAT+GGG | - | chr1_3:67329355-67329374 | Msa0135650:intron | 30.0% |
| ATAATATTAATACCTGGAGG+AGG | + | chr1_3:67329449-67329468 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | + | chr1_3:67329452-67329471 | None:intergenic | 30.0% | |
| !!! | GTTGTTATTTTCAAACCCAT+GGG | + | chr1_3:67329627-67329646 | None:intergenic | 30.0% |
| ! | TGCACAATAGAAAGAACTTT+TGG | - | chr1_3:67329680-67329699 | Msa0135650:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | - | chr1_3:67329687-67329706 | Msa0135650:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | - | chr1_3:67329802-67329821 | Msa0135650:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | + | chr1_3:67329864-67329883 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | + | chr1_3:67329865-67329884 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | - | chr1_3:67329877-67329896 | Msa0135650:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | + | chr1_3:67329890-67329909 | None:intergenic | 30.0% | |
| ! | TTTTGAACAAGCTTCTTTAG+TGG | - | chr1_3:67328767-67328786 | Msa0135650:CDS | 30.0% |
| TTGTTATGAGATGTTTCGAA+TGG | - | chr1_3:67328902-67328921 | Msa0135650:CDS | 30.0% | |
| TGCACTAAATTAGTTGATCA+TGG | - | chr1_3:67328948-67328967 | Msa0135650:CDS | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | + | chr1_3:67329138-67329157 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | + | chr1_3:67329203-67329222 | None:intergenic | 30.0% | |
| AGTGACCAAACTAGATTTAT+TGG | - | chr1_3:67329275-67329294 | Msa0135650:CDS | 30.0% | |
| TTCGTCCAATAAATCTAGTT+TGG | + | chr1_3:67329283-67329302 | None:intergenic | 30.0% | |
| AACTAGATTTATTGGACGAA+AGG | - | chr1_3:67329283-67329302 | Msa0135650:CDS | 30.0% | |
| ACTAGATTTATTGGACGAAA+GGG | - | chr1_3:67329284-67329303 | Msa0135650:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | - | chr1_3:67329307-67329326 | Msa0135650:CDS | 30.0% | |
| ! | ACAACCATTACATTTTGTGT+CGG | + | chr1_3:67329314-67329333 | None:intergenic | 30.0% |
| ATGTAATGGTTGTATGTGAT+TGG | - | chr1_3:67329321-67329340 | Msa0135650:CDS | 30.0% | |
| !!! | TGCTTTACTTTTGTTTTAGC+TGG | - | chr1_3:67329350-67329369 | Msa0135650:intron | 30.0% |
| !!! | TTACTTTTGTTTTAGCTGGA+TGG | - | chr1_3:67329354-67329373 | Msa0135650:intron | 30.0% |
| !!! | TACTTTTGTTTTAGCTGGAT+GGG | - | chr1_3:67329355-67329374 | Msa0135650:intron | 30.0% |
| ATAATATTAATACCTGGAGG+AGG | + | chr1_3:67329449-67329468 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | + | chr1_3:67329452-67329471 | None:intergenic | 30.0% | |
| !!! | GTTGTTATTTTCAAACCCAT+GGG | + | chr1_3:67329627-67329646 | None:intergenic | 30.0% |
| ! | TGCACAATAGAAAGAACTTT+TGG | - | chr1_3:67329680-67329699 | Msa0135650:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | - | chr1_3:67329687-67329706 | Msa0135650:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | - | chr1_3:67329802-67329821 | Msa0135650:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | + | chr1_3:67329864-67329883 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | + | chr1_3:67329865-67329884 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | - | chr1_3:67329877-67329896 | Msa0135650:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | + | chr1_3:67329890-67329909 | None:intergenic | 30.0% | |
| AACATCTCATAACAACGAGT+TGG | + | chr1_3:67328897-67328916 | None:intergenic | 35.0% | |
| TTAAAGCCCACTAATCACAT+AGG | - | chr1_3:67328972-67328991 | Msa0135650:CDS | 35.0% | |
| TAAAGCCCACTAATCACATA+GGG | - | chr1_3:67328973-67328992 | Msa0135650:CDS | 35.0% | |
| !! | GCAATGTTCTTACTTGTTGT+TGG | - | chr1_3:67329011-67329030 | Msa0135650:CDS | 35.0% |
| !! | TTCTTACTTGTTGTTGGACA+TGG | - | chr1_3:67329017-67329036 | Msa0135650:CDS | 35.0% |
| TTCAAAGTGATCCACGATAT+TGG | - | chr1_3:67329189-67329208 | Msa0135650:intron | 35.0% | |
| ! | ATGTATTATTTGGTGGATGC+CGG | - | chr1_3:67329530-67329549 | Msa0135650:CDS | 35.0% |
| ! | TGATAACGTTCACATCTGTA+TGG | + | chr1_3:67329584-67329603 | None:intergenic | 35.0% |
| !!! | CGTTGTTATTTTCAAACCCA+TGG | + | chr1_3:67329628-67329647 | None:intergenic | 35.0% |
| TGGGTTTGAAAATAACAACG+AGG | - | chr1_3:67329628-67329647 | Msa0135650:CDS | 35.0% | |
| !! | ATATGGACGTCGATTTCAAT+CGG | - | chr1_3:67329819-67329838 | Msa0135650:CDS | 35.0% |
| AACATGATTCATCTCAGATG+AGG | + | chr1_3:67329930-67329949 | None:intergenic | 35.0% | |
| GATGAATCATGTTCGAAACT+CGG | - | chr1_3:67329937-67329956 | Msa0135650:CDS | 35.0% | |
| AACATCTCATAACAACGAGT+TGG | + | chr1_3:67328897-67328916 | None:intergenic | 35.0% | |
| TTAAAGCCCACTAATCACAT+AGG | - | chr1_3:67328972-67328991 | Msa0135650:CDS | 35.0% | |
| TAAAGCCCACTAATCACATA+GGG | - | chr1_3:67328973-67328992 | Msa0135650:CDS | 35.0% | |
| !! | GCAATGTTCTTACTTGTTGT+TGG | - | chr1_3:67329011-67329030 | Msa0135650:CDS | 35.0% |
| !! | TTCTTACTTGTTGTTGGACA+TGG | - | chr1_3:67329017-67329036 | Msa0135650:CDS | 35.0% |
| TTCAAAGTGATCCACGATAT+TGG | - | chr1_3:67329189-67329208 | Msa0135650:intron | 35.0% | |
| ! | ATGTATTATTTGGTGGATGC+CGG | - | chr1_3:67329530-67329549 | Msa0135650:CDS | 35.0% |
| ! | TGATAACGTTCACATCTGTA+TGG | + | chr1_3:67329584-67329603 | None:intergenic | 35.0% |
| !!! | CGTTGTTATTTTCAAACCCA+TGG | + | chr1_3:67329628-67329647 | None:intergenic | 35.0% |
| TGGGTTTGAAAATAACAACG+AGG | - | chr1_3:67329628-67329647 | Msa0135650:CDS | 35.0% | |
| !! | ATATGGACGTCGATTTCAAT+CGG | - | chr1_3:67329819-67329838 | Msa0135650:CDS | 35.0% |
| AACATGATTCATCTCAGATG+AGG | + | chr1_3:67329930-67329949 | None:intergenic | 35.0% | |
| GATGAATCATGTTCGAAACT+CGG | - | chr1_3:67329937-67329956 | Msa0135650:CDS | 35.0% | |
| !! | GTTAGCTCACTAGTTCTACA+TGG | + | chr1_3:67328837-67328856 | None:intergenic | 40.0% |
| TGTAGAACTAGTGAGCTAAC+AGG | - | chr1_3:67328837-67328856 | Msa0135650:CDS | 40.0% | |
| GTAGAACTAGTGAGCTAACA+GGG | - | chr1_3:67328838-67328857 | Msa0135650:CDS | 40.0% | |
| !! | TGGGTGAAAGAAGTGTTACA+AGG | - | chr1_3:67328867-67328886 | Msa0135650:CDS | 40.0% |
| !! | GGGTGAAAGAAGTGTTACAA+GGG | - | chr1_3:67328868-67328887 | Msa0135650:CDS | 40.0% |
| AAAGCCCACTAATCACATAG+GGG | - | chr1_3:67328974-67328993 | Msa0135650:CDS | 40.0% | |
| TCTACCCCTATGTGATTAGT+GGG | + | chr1_3:67328981-67329000 | None:intergenic | 40.0% | |
| TTCTACCCCTATGTGATTAG+TGG | + | chr1_3:67328982-67329001 | None:intergenic | 40.0% | |
| TCACTGAACAAAGGATCTTG+AGG | + | chr1_3:67329155-67329174 | None:intergenic | 40.0% | |
| GCATGACTATCACTGAACAA+AGG | + | chr1_3:67329164-67329183 | None:intergenic | 40.0% | |
| AATGCTATAGGAGCAATCGA+TGG | - | chr1_3:67329224-67329243 | Msa0135650:intron | 40.0% | |
| !!! | TTTGTTTTAGCTGGATGGGA+AGG | - | chr1_3:67329359-67329378 | Msa0135650:intron | 40.0% |
| GTCAAAAACACGAGCATCAT+GGG | + | chr1_3:67329390-67329409 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | + | chr1_3:67329412-67329431 | None:intergenic | 40.0% | |
| ! | GTTATCACCTCCCTGATTTT+CGG | - | chr1_3:67329597-67329616 | Msa0135650:CDS | 40.0% |
| TGAAGTCGTTGTTGCAACAA+TGG | - | chr1_3:67329766-67329785 | Msa0135650:CDS | 40.0% | |
| !! | GTTAGCTCACTAGTTCTACA+TGG | + | chr1_3:67328837-67328856 | None:intergenic | 40.0% |
| TGTAGAACTAGTGAGCTAAC+AGG | - | chr1_3:67328837-67328856 | Msa0135650:CDS | 40.0% | |
| GTAGAACTAGTGAGCTAACA+GGG | - | chr1_3:67328838-67328857 | Msa0135650:CDS | 40.0% | |
| !! | TGGGTGAAAGAAGTGTTACA+AGG | - | chr1_3:67328867-67328886 | Msa0135650:CDS | 40.0% |
| !! | GGGTGAAAGAAGTGTTACAA+GGG | - | chr1_3:67328868-67328887 | Msa0135650:CDS | 40.0% |
| AAAGCCCACTAATCACATAG+GGG | - | chr1_3:67328974-67328993 | Msa0135650:CDS | 40.0% | |
| TCTACCCCTATGTGATTAGT+GGG | + | chr1_3:67328981-67329000 | None:intergenic | 40.0% | |
| TTCTACCCCTATGTGATTAG+TGG | + | chr1_3:67328982-67329001 | None:intergenic | 40.0% | |
| TCACTGAACAAAGGATCTTG+AGG | + | chr1_3:67329155-67329174 | None:intergenic | 40.0% | |
| GCATGACTATCACTGAACAA+AGG | + | chr1_3:67329164-67329183 | None:intergenic | 40.0% | |
| AATGCTATAGGAGCAATCGA+TGG | - | chr1_3:67329224-67329243 | Msa0135650:intron | 40.0% | |
| !!! | TTTGTTTTAGCTGGATGGGA+AGG | - | chr1_3:67329359-67329378 | Msa0135650:intron | 40.0% |
| GTCAAAAACACGAGCATCAT+GGG | + | chr1_3:67329390-67329409 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | + | chr1_3:67329412-67329431 | None:intergenic | 40.0% | |
| ! | GTTATCACCTCCCTGATTTT+CGG | - | chr1_3:67329597-67329616 | Msa0135650:CDS | 40.0% |
| TGAAGTCGTTGTTGCAACAA+TGG | - | chr1_3:67329766-67329785 | Msa0135650:CDS | 40.0% | |
| TTCTTTAGTGGCTGCACTGA+TGG | - | chr1_3:67328779-67328798 | Msa0135650:CDS | 45.0% | |
| ! | TCTTTAGTGGCTGCACTGAT+GGG | - | chr1_3:67328780-67328799 | Msa0135650:CDS | 45.0% |
| TCACATAGGGGTAGAAGAGA+TGG | - | chr1_3:67328986-67329005 | Msa0135650:CDS | 45.0% | |
| !! | ACTTGTTGTTGGACATGGAG+TGG | - | chr1_3:67329022-67329041 | Msa0135650:CDS | 45.0% |
| !! | CTTGTTGTTGGACATGGAGT+GGG | - | chr1_3:67329023-67329042 | Msa0135650:CDS | 45.0% |
| CAAGAAAGGTTCCAACACTC+AGG | - | chr1_3:67329059-67329078 | Msa0135650:CDS | 45.0% | |
| TCACAGTTTCTCCTGAGTGT+TGG | + | chr1_3:67329073-67329092 | None:intergenic | 45.0% | |
| TCACTAGCACTAACCACACA+GGG | + | chr1_3:67329260-67329279 | None:intergenic | 45.0% | |
| GGTCAAAAACACGAGCATCA+TGG | + | chr1_3:67329391-67329410 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | - | chr1_3:67329434-67329453 | Msa0135650:intron | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | + | chr1_3:67329443-67329462 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | + | chr1_3:67329566-67329585 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | - | chr1_3:67329826-67329845 | Msa0135650:CDS | 45.0% |
| TTCTTTAGTGGCTGCACTGA+TGG | - | chr1_3:67328779-67328798 | Msa0135650:CDS | 45.0% | |
| ! | TCTTTAGTGGCTGCACTGAT+GGG | - | chr1_3:67328780-67328799 | Msa0135650:CDS | 45.0% |
| TCACATAGGGGTAGAAGAGA+TGG | - | chr1_3:67328986-67329005 | Msa0135650:CDS | 45.0% | |
| !! | ACTTGTTGTTGGACATGGAG+TGG | - | chr1_3:67329022-67329041 | Msa0135650:CDS | 45.0% |
| !! | CTTGTTGTTGGACATGGAGT+GGG | - | chr1_3:67329023-67329042 | Msa0135650:CDS | 45.0% |
| CAAGAAAGGTTCCAACACTC+AGG | - | chr1_3:67329059-67329078 | Msa0135650:CDS | 45.0% | |
| TCACAGTTTCTCCTGAGTGT+TGG | + | chr1_3:67329073-67329092 | None:intergenic | 45.0% | |
| TCACTAGCACTAACCACACA+GGG | + | chr1_3:67329260-67329279 | None:intergenic | 45.0% | |
| GGTCAAAAACACGAGCATCA+TGG | + | chr1_3:67329391-67329410 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | - | chr1_3:67329434-67329453 | Msa0135650:intron | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | + | chr1_3:67329443-67329462 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | + | chr1_3:67329566-67329585 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | - | chr1_3:67329826-67329845 | Msa0135650:CDS | 45.0% |
| TGAGCTAACAGGGCATGCAT+GGG | - | chr1_3:67328848-67328867 | Msa0135650:CDS | 50.0% | |
| TGGTACGCATATTCCCTGTG+TGG | - | chr1_3:67329244-67329263 | Msa0135650:intron | 50.0% | |
| GTCACTAGCACTAACCACAC+AGG | + | chr1_3:67329261-67329280 | None:intergenic | 50.0% | |
| CATGGGAACGCCGAAAATCA+GGG | + | chr1_3:67329610-67329629 | None:intergenic | 50.0% | |
| ! | CTGATTTTCGGCGTTCCCAT+GGG | - | chr1_3:67329609-67329628 | Msa0135650:CDS | 50.0% |
| TGAGCTAACAGGGCATGCAT+GGG | - | chr1_3:67328848-67328867 | Msa0135650:CDS | 50.0% | |
| TGGTACGCATATTCCCTGTG+TGG | - | chr1_3:67329244-67329263 | Msa0135650:intron | 50.0% | |
| GTCACTAGCACTAACCACAC+AGG | + | chr1_3:67329261-67329280 | None:intergenic | 50.0% | |
| CATGGGAACGCCGAAAATCA+GGG | + | chr1_3:67329610-67329629 | None:intergenic | 50.0% | |
| ! | CTGATTTTCGGCGTTCCCAT+GGG | - | chr1_3:67329609-67329628 | Msa0135650:CDS | 50.0% |
| ! | GCTGCACTGATGGGTGAGTA+TGG | - | chr1_3:67328789-67328808 | Msa0135650:CDS | 55.0% |
| GTGAGCTAACAGGGCATGCA+TGG | - | chr1_3:67328847-67328866 | Msa0135650:CDS | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | - | chr1_3:67329547-67329566 | Msa0135650:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | - | chr1_3:67329548-67329567 | Msa0135650:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | + | chr1_3:67329552-67329571 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | - | chr1_3:67329549-67329568 | Msa0135650:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | + | chr1_3:67329560-67329579 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | - | chr1_3:67329557-67329576 | Msa0135650:CDS | 55.0% |
| CCATGGGAACGCCGAAAATC+AGG | + | chr1_3:67329611-67329630 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+TGG | - | chr1_3:67329608-67329627 | Msa0135650:CDS | 55.0% |
| ! | GCTGCACTGATGGGTGAGTA+TGG | - | chr1_3:67328789-67328808 | Msa0135650:CDS | 55.0% |
| GTGAGCTAACAGGGCATGCA+TGG | - | chr1_3:67328847-67328866 | Msa0135650:CDS | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | - | chr1_3:67329547-67329566 | Msa0135650:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | - | chr1_3:67329548-67329567 | Msa0135650:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | + | chr1_3:67329552-67329571 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | - | chr1_3:67329549-67329568 | Msa0135650:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | + | chr1_3:67329560-67329579 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | - | chr1_3:67329557-67329576 | Msa0135650:CDS | 55.0% |
| CCATGGGAACGCCGAAAATC+AGG | + | chr1_3:67329611-67329630 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+TGG | - | chr1_3:67329608-67329627 | Msa0135650:CDS | 55.0% |
| GGGAACGCCGAAAATCAGGG+AGG | + | chr1_3:67329607-67329626 | None:intergenic | 60.0% | |
| GGGAACGCCGAAAATCAGGG+AGG | + | chr1_3:67329607-67329626 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 67328726 | 67329997 | 67328726 | ID=Msa0135650;Name=Msa0135650 |
| chr1_3 | mRNA | 67328726 | 67329997 | 67328726 | ID=Msa0135650-mRNA-1;Parent=Msa0135650;Name=Msa0135650-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.5|0|1|1|1|3|0|358 |
| chr1_3 | exon | 67329478 | 67329997 | 67329478 | ID=Msa0135650-mRNA-1:exon:23127;Parent=Msa0135650-mRNA-1 |
| chr1_3 | exon | 67329268 | 67329354 | 67329268 | ID=Msa0135650-mRNA-1:exon:23126;Parent=Msa0135650-mRNA-1 |
| chr1_3 | exon | 67328726 | 67329195 | 67328726 | ID=Msa0135650-mRNA-1:exon:23125;Parent=Msa0135650-mRNA-1 |
| chr1_3 | CDS | 67329478 | 67329997 | 67329478 | ID=Msa0135650-mRNA-1:cds;Parent=Msa0135650-mRNA-1 |
| chr1_3 | CDS | 67329268 | 67329354 | 67329268 | ID=Msa0135650-mRNA-1:cds;Parent=Msa0135650-mRNA-1 |
| chr1_3 | CDS | 67328726 | 67329195 | 67328726 | ID=Msa0135650-mRNA-1:cds;Parent=Msa0135650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
