Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767730 | A0A2Z6N115 | 92.576 | 229 | 17 | 0 | 25 | 253 | 335 | 563 | 9.22e-157 | 457 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0602980 | Msa0767730 | 0.801904 | 7.224629e-49 | -8.615850e-47 |
| Msa0645290 | Msa0767730 | 0.890942 | 6.239893e-74 | -8.615850e-47 |
| Msa0767730 | Msa1115870 | 0.801579 | 8.425339e-49 | -8.615850e-47 |
| Msa0135650 | Msa0767730 | 0.883309 | 5.003597e-71 | -8.615850e-47 |
| Msa0198900 | Msa0767730 | 0.896257 | 4.387461e-76 | -8.615850e-47 |
| Msa0251630 | Msa0767730 | 0.872229 | 3.732639e-67 | -8.615850e-47 |
| Msa0251640 | Msa0767730 | 0.815470 | 9.093204e-52 | -8.615850e-47 |
| Msa0490140 | Msa0767730 | 0.835763 | 1.388414e-56 | -8.615850e-47 |
| Msa0490150 | Msa0767730 | 0.870718 | 1.180549e-66 | -8.615850e-47 |
| Msa0514320 | Msa0767730 | 0.802218 | 6.227238e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767730 | MtrunA17_Chr1g0172731 | 80.435 | 230 | 45 | 0 | 25 | 254 | 176 | 405 | 2.04e-143 | 407 |
| Msa0767730 | MtrunA17_Chr1g0190171 | 79.130 | 230 | 48 | 0 | 25 | 254 | 176 | 405 | 6.10e-142 | 404 |
| Msa0767730 | MtrunA17_Chr1g0207391 | 46.067 | 178 | 89 | 4 | 25 | 199 | 196 | 369 | 8.04e-49 | 166 |
| Msa0767730 | MtrunA17_Chr6g0478531 | 38.158 | 228 | 133 | 4 | 10 | 236 | 134 | 354 | 1.39e-46 | 159 |
| Msa0767730 | MtrunA17_Chr7g0226311 | 41.706 | 211 | 115 | 4 | 25 | 233 | 118 | 322 | 1.40e-46 | 158 |
| Msa0767730 | MtrunA17_Chr6g0477141 | 43.860 | 171 | 95 | 1 | 25 | 194 | 248 | 418 | 9.34e-46 | 159 |
| Msa0767730 | MtrunA17_Chr2g0321401 | 84.615 | 78 | 12 | 0 | 25 | 102 | 175 | 252 | 5.85e-45 | 152 |
| Msa0767730 | MtrunA17_Chr8g0334561 | 83.333 | 78 | 13 | 0 | 25 | 102 | 176 | 253 | 6.27e-45 | 152 |
| Msa0767730 | MtrunA17_Chr2g0285471 | 83.333 | 78 | 13 | 0 | 25 | 102 | 107 | 184 | 6.54e-45 | 149 |
| Msa0767730 | MtrunA17_Chr1g0182341 | 44.505 | 182 | 76 | 2 | 25 | 206 | 178 | 334 | 7.22e-45 | 155 |
| Msa0767730 | MtrunA17_Chr8g0391981 | 40.845 | 213 | 111 | 4 | 25 | 234 | 182 | 382 | 4.56e-43 | 150 |
| Msa0767730 | MtrunA17_Chr5g0420851 | 87.931 | 58 | 7 | 0 | 198 | 255 | 1 | 58 | 5.17e-29 | 104 |
| Msa0767730 | MtrunA17_Chr1g0211031 | 61.176 | 85 | 31 | 1 | 170 | 254 | 1 | 83 | 2.66e-28 | 103 |
| Msa0767730 | MtrunA17_Chr8g0370251 | 61.176 | 85 | 31 | 1 | 170 | 254 | 1 | 83 | 2.66e-28 | 103 |
| Msa0767730 | MtrunA17_Chr5g0427241 | 58.824 | 85 | 33 | 1 | 170 | 254 | 1 | 83 | 2.12e-27 | 100 |
| Msa0767730 | MtrunA17_Chr2g0295621 | 58.824 | 85 | 33 | 1 | 170 | 254 | 1 | 83 | 2.62e-27 | 100 |
| Msa0767730 | MtrunA17_Chr7g0267201 | 61.224 | 49 | 19 | 0 | 25 | 73 | 112 | 160 | 2.81e-16 | 74.3 |
| Msa0767730 | MtrunA17_Chr4g0018411 | 36.364 | 121 | 71 | 3 | 102 | 220 | 10 | 126 | 4.27e-16 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767730 | AT5G41980.1 | 36.036 | 222 | 114 | 5 | 11 | 227 | 136 | 334 | 1.32e-37 | 135 |
| Msa0767730 | AT3G30525.1 | 36.686 | 169 | 101 | 2 | 28 | 191 | 1 | 168 | 4.68e-31 | 113 |
| Msa0767730 | AT1G43722.1 | 39.865 | 148 | 83 | 2 | 22 | 164 | 174 | 320 | 6.38e-30 | 114 |
| Msa0767730 | AT5G35695.1 | 42.336 | 137 | 62 | 3 | 66 | 199 | 25 | 147 | 9.52e-30 | 111 |
| Msa0767730 | AT4G10890.3 | 45.055 | 91 | 49 | 1 | 77 | 167 | 71 | 160 | 3.68e-17 | 80.9 |
| Msa0767730 | AT4G10890.1 | 45.055 | 91 | 49 | 1 | 77 | 167 | 71 | 160 | 3.68e-17 | 80.9 |
| Msa0767730 | AT4G10890.2 | 45.055 | 91 | 49 | 1 | 77 | 167 | 71 | 160 | 3.68e-17 | 80.9 |
| Msa0767730 | AT5G28730.1 | 45.000 | 80 | 43 | 1 | 50 | 129 | 136 | 214 | 5.04e-16 | 76.3 |
| Msa0767730 | AT5G28950.1 | 45.205 | 73 | 40 | 0 | 25 | 97 | 26 | 98 | 1.11e-15 | 72.4 |
Find 45 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTATCACTCAAGTTTA+AGG | 0.112859 | 5_2:+31352160 | Msa0767730:CDS |
| AGTGACCAAACTAGATTTAT+TGG | 0.196921 | 5_2:+31351778 | Msa0767730:CDS |
| TTATCGTAGACCAGTTAATT+TGG | 0.251482 | 5_2:+31352380 | Msa0767730:CDS |
| TGAGATGAATCCAAATTAAC+TGG | 0.308066 | 5_2:-31352390 | None:intergenic |
| CTCATTGCAAAATGAACTAT+TGG | 0.311324 | 5_2:+31351218 | None:intergenic |
| CCATGGGAACGCCGAAAATC+AGG | 0.316313 | 5_2:-31352111 | None:intergenic |
| TTCGTCCAATAAATCTAGTT+TGG | 0.330713 | 5_2:-31351783 | None:intergenic |
| CCCCATCGGTGTTGGATAAC+CGG | 0.331584 | 5_2:-31352052 | None:intergenic |
| TGTGTCTTAATTGTGAATTT+AGG | 0.331819 | 5_2:-31352243 | None:intergenic |
| TGCACAATAGAAAGAACTTT+TGG | 0.340416 | 5_2:+31352183 | Msa0767730:CDS |
| TTCTTTAGTGGCTGCGCTGA+TGG | 0.369897 | 5_2:+31351282 | Msa0767730:CDS |
| TATTAGAAGGAATGCTGATA+TGG | 0.386332 | 5_2:+31352305 | Msa0767730:CDS |
| CTATACATAACTTTATTAGA+AGG | 0.401801 | 5_2:+31352292 | Msa0767730:CDS |
| CCAACACCGATGGGGTATCT+TGG | 0.413955 | 5_2:+31352060 | Msa0767730:CDS |
| TACGATAATCATCATGATCA+AGG | 0.435864 | 5_2:-31352365 | None:intergenic |
| TTAATACCTGGAGGAGGATG+TGG | 0.473645 | 5_2:-31351943 | None:intergenic |
| CCAAGATACCCCATCGGTGT+TGG | 0.475954 | 5_2:-31352060 | None:intergenic |
| TTTAGGTATGTATTATTTGG+TGG | 0.486635 | 5_2:+31352026 | Msa0767730:intron |
| ATGTATTATTTGGTGGATGC+CGG | 0.486645 | 5_2:+31352033 | Msa0767730:CDS |
| TCTTTAGTGGCTGCGCTGAT+GGG | 0.486854 | 5_2:+31351283 | Msa0767730:CDS |
| ACTAGATTTATTGGACGAAA+GGG | 0.486947 | 5_2:+31351787 | Msa0767730:CDS |
| CGTCGATTTCAATCGGTATG+AGG | 0.488598 | 5_2:+31352329 | Msa0767730:CDS |
| ATGTAATGGCTGTATGTGAT+TGG | 0.504425 | 5_2:+31351824 | Msa0767730:CDS |
| AACTAGATTTATTGGACGAA+AGG | 0.514080 | 5_2:+31351786 | Msa0767730:CDS |
| GCCGGTTATCCAACACCGAT+GGG | 0.518380 | 5_2:+31352051 | Msa0767730:CDS |
| TGATAACGTTCACATCTGTA+TGG | 0.526253 | 5_2:-31352084 | None:intergenic |
| TGAAGTCGTTGTTGCAACAA+TGG | 0.546744 | 5_2:+31352269 | Msa0767730:CDS |
| GATTTGCATTTGTGAGAGCA+TGG | 0.547923 | 5_2:-31351912 | None:intergenic |
| AATAAATCTAGTTTGGTCAC+TGG | 0.549153 | 5_2:-31351776 | None:intergenic |
| GATGAATCATGTTCGAAACT+CGG | 0.549572 | 5_2:+31352440 | Msa0767730:CDS |
| TGCCGGTTATCCAACACCGA+TGG | 0.556028 | 5_2:+31352050 | Msa0767730:CDS |
| CATGGGAACGCCGAAAATCA+GGG | 0.556357 | 5_2:-31352110 | None:intergenic |
| ATATGGACGTCGATTTCAAT+CGG | 0.561835 | 5_2:+31352322 | Msa0767730:CDS |
| ATATCCGACACAAAATGTAA+TGG | 0.578336 | 5_2:+31351810 | Msa0767730:CDS |
| ATAATATTAATACCTGGAGG+AGG | 0.608585 | 5_2:-31351949 | None:intergenic |
| GTCACTGGCACTAACCACAC+AGG | 0.619956 | 5_2:-31351761 | None:intergenic |
| ACGATAATCATCATGATCAA+GGG | 0.621055 | 5_2:-31352364 | None:intergenic |
| AACATGATTCATCTCAGATG+AGG | 0.624817 | 5_2:-31352430 | None:intergenic |
| AATGTTATAGGAGCAATCGA+TGG | 0.678263 | 5_2:+31351727 | Msa0767730:intron |
| TCACTGGCACTAACCACACA+GGG | 0.685550 | 5_2:-31351760 | None:intergenic |
| CCGGTTATCCAACACCGATG+GGG | 0.699683 | 5_2:+31352052 | Msa0767730:CDS |
| TATGGACCAAGATACCCCAT+CGG | 0.700535 | 5_2:-31352066 | None:intergenic |
| TGGTACGCATATTCCCTGTG+TGG | 0.730498 | 5_2:+31351747 | Msa0767730:CDS |
| GGGAACGCCGAAAATCAGGG+AGG | 0.802967 | 5_2:-31352107 | None:intergenic |
| TGGGTTTGAAAATAACAACG+AGG | 0.807645 | 5_2:+31352131 | Msa0767730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATTTAATTTATTTTT+AGG | + | chr5_2:31352009-31352028 | Msa0767730:intron | 0.0% |
| !!! | TTATAATTTAATTTATTTTT+AGG | + | chr5_2:31352009-31352028 | Msa0767730:intron | 0.0% |
| !! | TACTAATAAATAAGTTGTAA+AGG | - | chr5_2:31351975-31351994 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | + | chr5_2:31352023-31352042 | Msa0767730:intron | 15.0% |
| !! | TACTAATAAATAAGTTGTAA+AGG | - | chr5_2:31351975-31351994 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | + | chr5_2:31352023-31352042 | Msa0767730:intron | 15.0% |
| !! | CCTATAACATTCTTAAAAAA+TGG | - | chr5_2:31351718-31351737 | None:intergenic | 20.0% |
| !!! | CCATTTTTTAAGAATGTTAT+AGG | + | chr5_2:31351715-31351734 | Msa0767730:intron | 20.0% |
| !! | TAAAGGATAATATTAATACC+TGG | - | chr5_2:31351958-31351977 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | + | chr5_2:31352160-31352179 | Msa0767730:CDS | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | + | chr5_2:31352292-31352311 | Msa0767730:CDS | 20.0% |
| !! | CCTATAACATTCTTAAAAAA+TGG | - | chr5_2:31351718-31351737 | None:intergenic | 20.0% |
| !!! | CCATTTTTTAAGAATGTTAT+AGG | + | chr5_2:31351715-31351734 | Msa0767730:intron | 20.0% |
| !! | TAAAGGATAATATTAATACC+TGG | - | chr5_2:31351958-31351977 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | + | chr5_2:31352160-31352179 | Msa0767730:CDS | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | + | chr5_2:31352292-31352311 | Msa0767730:CDS | 20.0% |
| ! | GTGCAAAGTTTATGAAAAAT+AGG | - | chr5_2:31351436-31351455 | None:intergenic | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | + | chr5_2:31352026-31352045 | Msa0767730:intron | 25.0% |
| ! | TGTGTCTTAATTGTGAATTT+AGG | - | chr5_2:31352246-31352265 | None:intergenic | 25.0% |
| ! | GTGCAAAGTTTATGAAAAAT+AGG | - | chr5_2:31351436-31351455 | None:intergenic | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | + | chr5_2:31352026-31352045 | Msa0767730:intron | 25.0% |
| ! | TGTGTCTTAATTGTGAATTT+AGG | - | chr5_2:31352246-31352265 | None:intergenic | 25.0% |
| ! | TTTTGAACAAGCTTCTTTAG+TGG | + | chr5_2:31351270-31351289 | Msa0767730:CDS | 30.0% |
| TTGTTATGAGATGTTTCGAA+TGG | + | chr5_2:31351405-31351424 | Msa0767730:intron | 30.0% | |
| TGCACTAAATTAGTTGATCA+TGG | + | chr5_2:31351451-31351470 | Msa0767730:intron | 30.0% | |
| GTAACAGAATGATTCAAGAA+AGG | + | chr5_2:31351548-31351567 | Msa0767730:intron | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | - | chr5_2:31351641-31351660 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | - | chr5_2:31351706-31351725 | None:intergenic | 30.0% | |
| ! | AATAAATCTAGTTTGGTCAC+TGG | - | chr5_2:31351779-31351798 | None:intergenic | 30.0% |
| AGTGACCAAACTAGATTTAT+TGG | + | chr5_2:31351778-31351797 | Msa0767730:CDS | 30.0% | |
| TTCGTCCAATAAATCTAGTT+TGG | - | chr5_2:31351786-31351805 | None:intergenic | 30.0% | |
| AACTAGATTTATTGGACGAA+AGG | + | chr5_2:31351786-31351805 | Msa0767730:CDS | 30.0% | |
| ACTAGATTTATTGGACGAAA+GGG | + | chr5_2:31351787-31351806 | Msa0767730:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | + | chr5_2:31351810-31351829 | Msa0767730:CDS | 30.0% | |
| ATAATATTAATACCTGGAGG+AGG | - | chr5_2:31351952-31351971 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | - | chr5_2:31351955-31351974 | None:intergenic | 30.0% | |
| !!! | GTTGTTATTTTCAAACCCAT+GGG | - | chr5_2:31352130-31352149 | None:intergenic | 30.0% |
| ! | TGCACAATAGAAAGAACTTT+TGG | + | chr5_2:31352183-31352202 | Msa0767730:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | + | chr5_2:31352190-31352209 | Msa0767730:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | + | chr5_2:31352305-31352324 | Msa0767730:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | - | chr5_2:31352367-31352386 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | - | chr5_2:31352368-31352387 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | + | chr5_2:31352380-31352399 | Msa0767730:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | - | chr5_2:31352393-31352412 | None:intergenic | 30.0% | |
| ! | TTTTGAACAAGCTTCTTTAG+TGG | + | chr5_2:31351270-31351289 | Msa0767730:CDS | 30.0% |
| TTGTTATGAGATGTTTCGAA+TGG | + | chr5_2:31351405-31351424 | Msa0767730:intron | 30.0% | |
| TGCACTAAATTAGTTGATCA+TGG | + | chr5_2:31351451-31351470 | Msa0767730:intron | 30.0% | |
| GTAACAGAATGATTCAAGAA+AGG | + | chr5_2:31351548-31351567 | Msa0767730:intron | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | - | chr5_2:31351641-31351660 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | - | chr5_2:31351706-31351725 | None:intergenic | 30.0% | |
| ! | AATAAATCTAGTTTGGTCAC+TGG | - | chr5_2:31351779-31351798 | None:intergenic | 30.0% |
| AGTGACCAAACTAGATTTAT+TGG | + | chr5_2:31351778-31351797 | Msa0767730:CDS | 30.0% | |
| TTCGTCCAATAAATCTAGTT+TGG | - | chr5_2:31351786-31351805 | None:intergenic | 30.0% | |
| AACTAGATTTATTGGACGAA+AGG | + | chr5_2:31351786-31351805 | Msa0767730:CDS | 30.0% | |
| ACTAGATTTATTGGACGAAA+GGG | + | chr5_2:31351787-31351806 | Msa0767730:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | + | chr5_2:31351810-31351829 | Msa0767730:CDS | 30.0% | |
| ATAATATTAATACCTGGAGG+AGG | - | chr5_2:31351952-31351971 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | - | chr5_2:31351955-31351974 | None:intergenic | 30.0% | |
| !!! | GTTGTTATTTTCAAACCCAT+GGG | - | chr5_2:31352130-31352149 | None:intergenic | 30.0% |
| ! | TGCACAATAGAAAGAACTTT+TGG | + | chr5_2:31352183-31352202 | Msa0767730:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | + | chr5_2:31352190-31352209 | Msa0767730:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | + | chr5_2:31352305-31352324 | Msa0767730:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | - | chr5_2:31352367-31352386 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | - | chr5_2:31352368-31352387 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | + | chr5_2:31352380-31352399 | Msa0767730:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | - | chr5_2:31352393-31352412 | None:intergenic | 30.0% | |
| AACATCTCATAACAACGAGT+TGG | - | chr5_2:31351400-31351419 | None:intergenic | 35.0% | |
| TTAAAGCCCACTAATCACAT+AGG | + | chr5_2:31351475-31351494 | Msa0767730:intron | 35.0% | |
| TAAAGCCCACTAATCACATA+GGG | + | chr5_2:31351476-31351495 | Msa0767730:intron | 35.0% | |
| !! | GCAATGTTCTTACTTGTTGT+TGG | + | chr5_2:31351514-31351533 | Msa0767730:intron | 35.0% |
| !! | TTCTTACTTGTTGTTGGACA+TGG | + | chr5_2:31351520-31351539 | Msa0767730:intron | 35.0% |
| TCATTGAACAAAGGATCTTG+AGG | - | chr5_2:31351658-31351677 | None:intergenic | 35.0% | |
| GCATGACTATCATTGAACAA+AGG | - | chr5_2:31351667-31351686 | None:intergenic | 35.0% | |
| TTCAAAGTGATCCACGATAT+TGG | + | chr5_2:31351692-31351711 | Msa0767730:intron | 35.0% | |
| AATGTTATAGGAGCAATCGA+TGG | + | chr5_2:31351727-31351746 | Msa0767730:intron | 35.0% | |
| ! | ACAGCCATTACATTTTGTGT+CGG | - | chr5_2:31351817-31351836 | None:intergenic | 35.0% |
| ATGTAATGGCTGTATGTGAT+TGG | + | chr5_2:31351824-31351843 | Msa0767730:CDS | 35.0% | |
| !!! | TGCTTCACTTTTGTTTTAGC+TGG | + | chr5_2:31351853-31351872 | Msa0767730:CDS | 35.0% |
| !!! | TCACTTTTGTTTTAGCTGGA+TGG | + | chr5_2:31351857-31351876 | Msa0767730:CDS | 35.0% |
| !!! | CACTTTTGTTTTAGCTGGAT+GGG | + | chr5_2:31351858-31351877 | Msa0767730:CDS | 35.0% |
| ! | ATGTATTATTTGGTGGATGC+CGG | + | chr5_2:31352033-31352052 | Msa0767730:CDS | 35.0% |
| ! | TGATAACGTTCACATCTGTA+TGG | - | chr5_2:31352087-31352106 | None:intergenic | 35.0% |
| !!! | CGTTGTTATTTTCAAACCCA+TGG | - | chr5_2:31352131-31352150 | None:intergenic | 35.0% |
| TGGGTTTGAAAATAACAACG+AGG | + | chr5_2:31352131-31352150 | Msa0767730:CDS | 35.0% | |
| !! | ATATGGACGTCGATTTCAAT+CGG | + | chr5_2:31352322-31352341 | Msa0767730:CDS | 35.0% |
| AACATGATTCATCTCAGATG+AGG | - | chr5_2:31352433-31352452 | None:intergenic | 35.0% | |
| GATGAATCATGTTCGAAACT+CGG | + | chr5_2:31352440-31352459 | Msa0767730:CDS | 35.0% | |
| AACATCTCATAACAACGAGT+TGG | - | chr5_2:31351400-31351419 | None:intergenic | 35.0% | |
| TTAAAGCCCACTAATCACAT+AGG | + | chr5_2:31351475-31351494 | Msa0767730:intron | 35.0% | |
| TAAAGCCCACTAATCACATA+GGG | + | chr5_2:31351476-31351495 | Msa0767730:intron | 35.0% | |
| !! | GCAATGTTCTTACTTGTTGT+TGG | + | chr5_2:31351514-31351533 | Msa0767730:intron | 35.0% |
| !! | TTCTTACTTGTTGTTGGACA+TGG | + | chr5_2:31351520-31351539 | Msa0767730:intron | 35.0% |
| TCATTGAACAAAGGATCTTG+AGG | - | chr5_2:31351658-31351677 | None:intergenic | 35.0% | |
| GCATGACTATCATTGAACAA+AGG | - | chr5_2:31351667-31351686 | None:intergenic | 35.0% | |
| TTCAAAGTGATCCACGATAT+TGG | + | chr5_2:31351692-31351711 | Msa0767730:intron | 35.0% | |
| AATGTTATAGGAGCAATCGA+TGG | + | chr5_2:31351727-31351746 | Msa0767730:intron | 35.0% | |
| ! | ACAGCCATTACATTTTGTGT+CGG | - | chr5_2:31351817-31351836 | None:intergenic | 35.0% |
| ATGTAATGGCTGTATGTGAT+TGG | + | chr5_2:31351824-31351843 | Msa0767730:CDS | 35.0% | |
| !!! | TGCTTCACTTTTGTTTTAGC+TGG | + | chr5_2:31351853-31351872 | Msa0767730:CDS | 35.0% |
| !!! | TCACTTTTGTTTTAGCTGGA+TGG | + | chr5_2:31351857-31351876 | Msa0767730:CDS | 35.0% |
| !!! | CACTTTTGTTTTAGCTGGAT+GGG | + | chr5_2:31351858-31351877 | Msa0767730:CDS | 35.0% |
| ! | ATGTATTATTTGGTGGATGC+CGG | + | chr5_2:31352033-31352052 | Msa0767730:CDS | 35.0% |
| ! | TGATAACGTTCACATCTGTA+TGG | - | chr5_2:31352087-31352106 | None:intergenic | 35.0% |
| !!! | CGTTGTTATTTTCAAACCCA+TGG | - | chr5_2:31352131-31352150 | None:intergenic | 35.0% |
| TGGGTTTGAAAATAACAACG+AGG | + | chr5_2:31352131-31352150 | Msa0767730:CDS | 35.0% | |
| !! | ATATGGACGTCGATTTCAAT+CGG | + | chr5_2:31352322-31352341 | Msa0767730:CDS | 35.0% |
| AACATGATTCATCTCAGATG+AGG | - | chr5_2:31352433-31352452 | None:intergenic | 35.0% | |
| GATGAATCATGTTCGAAACT+CGG | + | chr5_2:31352440-31352459 | Msa0767730:CDS | 35.0% | |
| !! | GTTAGCTCACTAGTTCTACA+TGG | - | chr5_2:31351340-31351359 | None:intergenic | 40.0% |
| TGTAGAACTAGTGAGCTAAC+AGG | + | chr5_2:31351340-31351359 | Msa0767730:intron | 40.0% | |
| GTAGAACTAGTGAGCTAACA+GGG | + | chr5_2:31351341-31351360 | Msa0767730:intron | 40.0% | |
| !! | TGGGTGAAAGAAGTGTTACA+AGG | + | chr5_2:31351370-31351389 | Msa0767730:intron | 40.0% |
| !! | GGGTGAAAGAAGTGTTACAA+GGG | + | chr5_2:31351371-31351390 | Msa0767730:intron | 40.0% |
| AAAGCCCACTAATCACATAG+GGG | + | chr5_2:31351477-31351496 | Msa0767730:intron | 40.0% | |
| TCTACCCCTATGTGATTAGT+GGG | - | chr5_2:31351484-31351503 | None:intergenic | 40.0% | |
| TTCTACCCCTATGTGATTAG+TGG | - | chr5_2:31351485-31351504 | None:intergenic | 40.0% | |
| !!! | TTTGTTTTAGCTGGATGGGA+AGG | + | chr5_2:31351862-31351881 | Msa0767730:CDS | 40.0% |
| GTCAAAAACACGAGCATCAT+GGG | - | chr5_2:31351893-31351912 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | - | chr5_2:31351915-31351934 | None:intergenic | 40.0% | |
| ! | GTTATCACCTCCCTGATTTT+CGG | + | chr5_2:31352100-31352119 | Msa0767730:CDS | 40.0% |
| TGAAGTCGTTGTTGCAACAA+TGG | + | chr5_2:31352269-31352288 | Msa0767730:CDS | 40.0% | |
| !! | GTTAGCTCACTAGTTCTACA+TGG | - | chr5_2:31351340-31351359 | None:intergenic | 40.0% |
| TGTAGAACTAGTGAGCTAAC+AGG | + | chr5_2:31351340-31351359 | Msa0767730:intron | 40.0% | |
| GTAGAACTAGTGAGCTAACA+GGG | + | chr5_2:31351341-31351360 | Msa0767730:intron | 40.0% | |
| !! | TGGGTGAAAGAAGTGTTACA+AGG | + | chr5_2:31351370-31351389 | Msa0767730:intron | 40.0% |
| !! | GGGTGAAAGAAGTGTTACAA+GGG | + | chr5_2:31351371-31351390 | Msa0767730:intron | 40.0% |
| AAAGCCCACTAATCACATAG+GGG | + | chr5_2:31351477-31351496 | Msa0767730:intron | 40.0% | |
| TCTACCCCTATGTGATTAGT+GGG | - | chr5_2:31351484-31351503 | None:intergenic | 40.0% | |
| TTCTACCCCTATGTGATTAG+TGG | - | chr5_2:31351485-31351504 | None:intergenic | 40.0% | |
| !!! | TTTGTTTTAGCTGGATGGGA+AGG | + | chr5_2:31351862-31351881 | Msa0767730:CDS | 40.0% |
| GTCAAAAACACGAGCATCAT+GGG | - | chr5_2:31351893-31351912 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | - | chr5_2:31351915-31351934 | None:intergenic | 40.0% | |
| ! | GTTATCACCTCCCTGATTTT+CGG | + | chr5_2:31352100-31352119 | Msa0767730:CDS | 40.0% |
| TGAAGTCGTTGTTGCAACAA+TGG | + | chr5_2:31352269-31352288 | Msa0767730:CDS | 40.0% | |
| TCACATAGGGGTAGAAGAGA+TGG | + | chr5_2:31351489-31351508 | Msa0767730:intron | 45.0% | |
| !! | ACTTGTTGTTGGACATGGAG+TGG | + | chr5_2:31351525-31351544 | Msa0767730:intron | 45.0% |
| !! | CTTGTTGTTGGACATGGAGT+GGG | + | chr5_2:31351526-31351545 | Msa0767730:intron | 45.0% |
| CAAGAAAGGTTCCAACACTC+AGG | + | chr5_2:31351562-31351581 | Msa0767730:intron | 45.0% | |
| TCACAGTTTCTCCTGAGTGT+TGG | - | chr5_2:31351576-31351595 | None:intergenic | 45.0% | |
| GGTCAAAAACACGAGCATCA+TGG | - | chr5_2:31351894-31351913 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | + | chr5_2:31351937-31351956 | Msa0767730:CDS | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | - | chr5_2:31351946-31351965 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | - | chr5_2:31352069-31352088 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | + | chr5_2:31352329-31352348 | Msa0767730:CDS | 45.0% |
| TCACATAGGGGTAGAAGAGA+TGG | + | chr5_2:31351489-31351508 | Msa0767730:intron | 45.0% | |
| !! | ACTTGTTGTTGGACATGGAG+TGG | + | chr5_2:31351525-31351544 | Msa0767730:intron | 45.0% |
| !! | CTTGTTGTTGGACATGGAGT+GGG | + | chr5_2:31351526-31351545 | Msa0767730:intron | 45.0% |
| CAAGAAAGGTTCCAACACTC+AGG | + | chr5_2:31351562-31351581 | Msa0767730:intron | 45.0% | |
| TCACAGTTTCTCCTGAGTGT+TGG | - | chr5_2:31351576-31351595 | None:intergenic | 45.0% | |
| GGTCAAAAACACGAGCATCA+TGG | - | chr5_2:31351894-31351913 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | + | chr5_2:31351937-31351956 | Msa0767730:CDS | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | - | chr5_2:31351946-31351965 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | - | chr5_2:31352069-31352088 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | + | chr5_2:31352329-31352348 | Msa0767730:CDS | 45.0% |
| TTCTTTAGTGGCTGCGCTGA+TGG | + | chr5_2:31351282-31351301 | Msa0767730:CDS | 50.0% | |
| ! | TCTTTAGTGGCTGCGCTGAT+GGG | + | chr5_2:31351283-31351302 | Msa0767730:CDS | 50.0% |
| TGAGCTAACAGGGCATGCAT+GGG | + | chr5_2:31351351-31351370 | Msa0767730:intron | 50.0% | |
| TGGTACGCATATTCCCTGTG+TGG | + | chr5_2:31351747-31351766 | Msa0767730:CDS | 50.0% | |
| TCACTGGCACTAACCACACA+GGG | - | chr5_2:31351763-31351782 | None:intergenic | 50.0% | |
| CATGGGAACGCCGAAAATCA+GGG | - | chr5_2:31352113-31352132 | None:intergenic | 50.0% | |
| ! | CTGATTTTCGGCGTTCCCAT+GGG | + | chr5_2:31352112-31352131 | Msa0767730:CDS | 50.0% |
| TTCTTTAGTGGCTGCGCTGA+TGG | + | chr5_2:31351282-31351301 | Msa0767730:CDS | 50.0% | |
| ! | TCTTTAGTGGCTGCGCTGAT+GGG | + | chr5_2:31351283-31351302 | Msa0767730:CDS | 50.0% |
| TGAGCTAACAGGGCATGCAT+GGG | + | chr5_2:31351351-31351370 | Msa0767730:intron | 50.0% | |
| TGGTACGCATATTCCCTGTG+TGG | + | chr5_2:31351747-31351766 | Msa0767730:CDS | 50.0% | |
| TCACTGGCACTAACCACACA+GGG | - | chr5_2:31351763-31351782 | None:intergenic | 50.0% | |
| CATGGGAACGCCGAAAATCA+GGG | - | chr5_2:31352113-31352132 | None:intergenic | 50.0% | |
| ! | CTGATTTTCGGCGTTCCCAT+GGG | + | chr5_2:31352112-31352131 | Msa0767730:CDS | 50.0% |
| GTGAGCTAACAGGGCATGCA+TGG | + | chr5_2:31351350-31351369 | Msa0767730:intron | 55.0% | |
| GTCACTGGCACTAACCACAC+AGG | - | chr5_2:31351764-31351783 | None:intergenic | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | + | chr5_2:31352050-31352069 | Msa0767730:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | + | chr5_2:31352051-31352070 | Msa0767730:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | - | chr5_2:31352055-31352074 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | + | chr5_2:31352052-31352071 | Msa0767730:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | - | chr5_2:31352063-31352082 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | + | chr5_2:31352060-31352079 | Msa0767730:CDS | 55.0% |
| CCATGGGAACGCCGAAAATC+AGG | - | chr5_2:31352114-31352133 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+TGG | + | chr5_2:31352111-31352130 | Msa0767730:CDS | 55.0% |
| GTGAGCTAACAGGGCATGCA+TGG | + | chr5_2:31351350-31351369 | Msa0767730:intron | 55.0% | |
| GTCACTGGCACTAACCACAC+AGG | - | chr5_2:31351764-31351783 | None:intergenic | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | + | chr5_2:31352050-31352069 | Msa0767730:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | + | chr5_2:31352051-31352070 | Msa0767730:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | - | chr5_2:31352055-31352074 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | + | chr5_2:31352052-31352071 | Msa0767730:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | - | chr5_2:31352063-31352082 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | + | chr5_2:31352060-31352079 | Msa0767730:CDS | 55.0% |
| CCATGGGAACGCCGAAAATC+AGG | - | chr5_2:31352114-31352133 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+TGG | + | chr5_2:31352111-31352130 | Msa0767730:CDS | 55.0% |
| ! | GCTGCGCTGATGGGTGAGTA+TGG | + | chr5_2:31351292-31351311 | Msa0767730:intron | 60.0% |
| GGGAACGCCGAAAATCAGGG+AGG | - | chr5_2:31352110-31352129 | None:intergenic | 60.0% | |
| ! | GCTGCGCTGATGGGTGAGTA+TGG | + | chr5_2:31351292-31351311 | Msa0767730:intron | 60.0% |
| GGGAACGCCGAAAATCAGGG+AGG | - | chr5_2:31352110-31352129 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 31351229 | 31352500 | 31351229 | ID=Msa0767730;Name=Msa0767730 |
| chr5_2 | mRNA | 31351229 | 31352500 | 31351229 | ID=Msa0767730-mRNA-1;Parent=Msa0767730;Name=Msa0767730-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.5|0|0.66|1|0.66|3|0|255 |
| chr5_2 | exon | 31351229 | 31351304 | 31351229 | ID=Msa0767730-mRNA-1:exon:11605;Parent=Msa0767730-mRNA-1 |
| chr5_2 | exon | 31351737 | 31351958 | 31351737 | ID=Msa0767730-mRNA-1:exon:11606;Parent=Msa0767730-mRNA-1 |
| chr5_2 | exon | 31352031 | 31352500 | 31352031 | ID=Msa0767730-mRNA-1:exon:11607;Parent=Msa0767730-mRNA-1 |
| chr5_2 | CDS | 31351229 | 31351304 | 31351229 | ID=Msa0767730-mRNA-1:cds;Parent=Msa0767730-mRNA-1 |
| chr5_2 | CDS | 31351737 | 31351958 | 31351737 | ID=Msa0767730-mRNA-1:cds;Parent=Msa0767730-mRNA-1 |
| chr5_2 | CDS | 31352031 | 31352500 | 31352031 | ID=Msa0767730-mRNA-1:cds;Parent=Msa0767730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
