Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645290 | XP_024631836.2 | 96.742 | 399 | 13 | 0 | 1 | 399 | 1 | 399 | 0.0 | 813 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645290 | A0A396JPB9 | 79.683 | 379 | 77 | 0 | 20 | 398 | 27 | 405 | 0.0 | 662 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0645290 | Msa0767730 | 0.890942 | 6.239893e-74 | -8.615850e-47 |
| Msa0135650 | Msa0645290 | 0.988593 | 1.248668e-174 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645290 | MtrunA17_Chr1g0172731 | 79.683 | 379 | 77 | 0 | 20 | 398 | 27 | 405 | 0.0 | 662 |
| Msa0645290 | MtrunA17_Chr1g0190171 | 78.892 | 379 | 80 | 0 | 20 | 398 | 27 | 405 | 0.0 | 659 |
| Msa0645290 | MtrunA17_Chr2g0321401 | 75.000 | 252 | 57 | 1 | 1 | 246 | 1 | 252 | 1.16e-142 | 406 |
| Msa0645290 | MtrunA17_Chr8g0334561 | 73.123 | 253 | 61 | 1 | 1 | 246 | 1 | 253 | 2.87e-140 | 400 |
| Msa0645290 | MtrunA17_Chr2g0285471 | 79.891 | 184 | 37 | 0 | 63 | 246 | 1 | 184 | 1.10e-109 | 320 |
| Msa0645290 | MtrunA17_Chr1g0182341 | 43.064 | 346 | 163 | 5 | 13 | 350 | 15 | 334 | 8.47e-91 | 278 |
| Msa0645290 | MtrunA17_Chr6g0477141 | 42.249 | 329 | 185 | 3 | 12 | 338 | 93 | 418 | 1.14e-83 | 263 |
| Msa0645290 | MtrunA17_Chr6g0478531 | 40.230 | 348 | 198 | 6 | 35 | 380 | 15 | 354 | 1.94e-83 | 260 |
| Msa0645290 | MtrunA17_Chr7g0226311 | 42.547 | 322 | 174 | 6 | 59 | 377 | 9 | 322 | 4.06e-74 | 234 |
| Msa0645290 | MtrunA17_Chr8g0391981 | 37.808 | 365 | 205 | 7 | 18 | 378 | 36 | 382 | 2.36e-70 | 227 |
| Msa0645290 | MtrunA17_Chr1g0207391 | 40.129 | 309 | 162 | 8 | 45 | 343 | 74 | 369 | 1.16e-67 | 220 |
| Msa0645290 | MtrunA17_Chr7g0267201 | 47.500 | 160 | 76 | 2 | 66 | 217 | 1 | 160 | 1.55e-46 | 157 |
| Msa0645290 | MtrunA17_Chr3g0140031 | 65.179 | 112 | 32 | 1 | 1 | 105 | 1 | 112 | 4.46e-46 | 154 |
| Msa0645290 | MtrunA17_Chr5g0420851 | 87.931 | 58 | 7 | 0 | 342 | 399 | 1 | 58 | 3.98e-28 | 105 |
| Msa0645290 | MtrunA17_Chr1g0211031 | 60.465 | 86 | 32 | 1 | 314 | 399 | 1 | 84 | 3.99e-27 | 103 |
| Msa0645290 | MtrunA17_Chr8g0370251 | 60.465 | 86 | 32 | 1 | 314 | 399 | 1 | 84 | 3.99e-27 | 103 |
| Msa0645290 | MtrunA17_Chr5g0427241 | 58.824 | 85 | 33 | 1 | 314 | 398 | 1 | 83 | 2.96e-26 | 100 |
| Msa0645290 | MtrunA17_Chr2g0295621 | 58.824 | 85 | 33 | 1 | 314 | 398 | 1 | 83 | 3.32e-26 | 100 |
| Msa0645290 | MtrunA17_Chr1g0154421 | 36.242 | 149 | 93 | 2 | 14 | 161 | 2 | 149 | 7.55e-20 | 85.5 |
| Msa0645290 | MtrunA17_Chr4g0018411 | 36.364 | 121 | 71 | 3 | 246 | 364 | 10 | 126 | 3.03e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645290 | AT5G41980.1 | 37.391 | 345 | 185 | 7 | 33 | 371 | 15 | 334 | 6.22e-71 | 228 |
| Msa0645290 | AT1G43722.1 | 36.218 | 312 | 185 | 6 | 4 | 308 | 16 | 320 | 5.33e-59 | 195 |
| Msa0645290 | AT5G28730.1 | 34.016 | 244 | 127 | 6 | 33 | 273 | 2 | 214 | 8.60e-39 | 141 |
| Msa0645290 | AT3G30525.1 | 36.095 | 169 | 102 | 2 | 172 | 335 | 1 | 168 | 2.89e-29 | 112 |
| Msa0645290 | AT5G35695.1 | 42.553 | 141 | 63 | 4 | 210 | 346 | 25 | 151 | 4.00e-28 | 110 |
| Msa0645290 | AT5G28950.1 | 43.182 | 88 | 50 | 0 | 154 | 241 | 11 | 98 | 7.76e-20 | 85.9 |
| Msa0645290 | AT4G10890.3 | 45.055 | 91 | 49 | 1 | 221 | 311 | 71 | 160 | 3.92e-16 | 80.5 |
| Msa0645290 | AT4G10890.1 | 45.055 | 91 | 49 | 1 | 221 | 311 | 71 | 160 | 3.92e-16 | 80.5 |
| Msa0645290 | AT4G10890.2 | 45.055 | 91 | 49 | 1 | 221 | 311 | 71 | 160 | 3.92e-16 | 80.5 |
Find 71 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTATCACTCAAGTTTA+AGG | 0.112859 | 4_3:-50138729 | Msa0645290:CDS |
| AGTGACCAAACTAGATTTAT+TGG | 0.180547 | 4_3:-50139111 | Msa0645290:CDS |
| TTATCGTAGACCAGTTAATT+TGG | 0.251482 | 4_3:-50138509 | Msa0645290:CDS |
| TGAGATGAATCCAAATTAAC+TGG | 0.308066 | 4_3:+50138499 | None:intergenic |
| CTCATTGCAAAATGAACTAT+TGG | 0.311324 | 4_3:-50139671 | None:intergenic |
| CCATGGGAACGCCGAAAATC+AGG | 0.316313 | 4_3:+50138778 | None:intergenic |
| TTCGTCCAATAAATCTAGTT+TGG | 0.330713 | 4_3:+50139106 | None:intergenic |
| CCCCATCGGTGTTGGATAAC+CGG | 0.331584 | 4_3:+50138837 | None:intergenic |
| TTCAAAGTGATCCACGATAT+TGG | 0.339686 | 4_3:-50139197 | Msa0645290:CDS |
| TGCACAATAGAAAGAACTTT+TGG | 0.340416 | 4_3:-50138706 | Msa0645290:CDS |
| TTCTTTAGTGGCTGCACTGA+TGG | 0.377877 | 4_3:-50139607 | Msa0645290:CDS |
| TATTAGAAGGAATGCTGATA+TGG | 0.386332 | 4_3:-50138584 | Msa0645290:CDS |
| CTATACATAACTTTATTAGA+AGG | 0.401801 | 4_3:-50138597 | Msa0645290:CDS |
| TGTAGAACTAGTGAGCTAAC+AGG | 0.402946 | 4_3:-50139549 | Msa0645290:CDS |
| TTCTACCCCTATGTGATTAG+TGG | 0.407094 | 4_3:+50139407 | None:intergenic |
| TGCACTAAATTAGTTGATCA+TGG | 0.412015 | 4_3:-50139438 | Msa0645290:CDS |
| CCAACACCGATGGGGTATCT+TGG | 0.413955 | 4_3:-50138829 | Msa0645290:CDS |
| GCAATGTTCTTACTTGTTGT+TGG | 0.423911 | 4_3:-50139375 | Msa0645290:CDS |
| TACGATAATCATCATGATCA+AGG | 0.435864 | 4_3:+50138524 | None:intergenic |
| GCTGCACTGATGGGTGAGTA+TGG | 0.463587 | 4_3:-50139597 | Msa0645290:CDS |
| ATGTAATGGTTGTATGTGAT+TGG | 0.467475 | 4_3:-50139065 | Msa0645290:CDS |
| TTAATACCTGGAGGAGGATG+TGG | 0.473645 | 4_3:+50138946 | None:intergenic |
| GTGAGCTAACAGGGCATGCA+TGG | 0.475764 | 4_3:-50139539 | Msa0645290:CDS |
| CCAAGATACCCCATCGGTGT+TGG | 0.475954 | 4_3:+50138829 | None:intergenic |
| TTCTTACTTGTTGTTGGACA+TGG | 0.479104 | 4_3:-50139369 | Msa0645290:CDS |
| TTGAGGCTTTATATATTCGA+TGG | 0.486174 | 4_3:+50139251 | None:intergenic |
| TTTAGGTATGTATTATTTGG+TGG | 0.486635 | 4_3:-50138863 | Msa0645290:intron |
| ATGTATTATTTGGTGGATGC+CGG | 0.486645 | 4_3:-50138856 | Msa0645290:CDS |
| ACTAGATTTATTGGACGAAA+GGG | 0.486947 | 4_3:-50139102 | Msa0645290:CDS |
| CGTCGATTTCAATCGGTATG+AGG | 0.488598 | 4_3:-50138560 | Msa0645290:CDS |
| AACTAGATTTATTGGACGAA+AGG | 0.514080 | 4_3:-50139103 | Msa0645290:CDS |
| GCCGGTTATCCAACACCGAT+GGG | 0.518380 | 4_3:-50138838 | Msa0645290:CDS |
| TCTTTAGTGGCTGCACTGAT+GGG | 0.518551 | 4_3:-50139606 | Msa0645290:CDS |
| TTGTTATGAGATGTTTCGAA+TGG | 0.520234 | 4_3:-50139484 | Msa0645290:CDS |
| TGATAACGTTCACATCTGTA+TGG | 0.526253 | 4_3:+50138805 | None:intergenic |
| TAAAGCCCACTAATCACATA+GGG | 0.528574 | 4_3:-50139413 | Msa0645290:CDS |
| TCTACCCCTATGTGATTAGT+GGG | 0.529840 | 4_3:+50139408 | None:intergenic |
| TGAAGTCGTTGTTGCAACAA+TGG | 0.546744 | 4_3:-50138620 | Msa0645290:CDS |
| GATTTGCATTTGTGAGAGCA+TGG | 0.547923 | 4_3:+50138977 | None:intergenic |
| GATGAATCATGTTCGAAACT+CGG | 0.549572 | 4_3:-50138449 | Msa0645290:CDS |
| AACATCTCATAACAACGAGT+TGG | 0.551166 | 4_3:+50139492 | None:intergenic |
| TGCCGGTTATCCAACACCGA+TGG | 0.556028 | 4_3:-50138839 | Msa0645290:CDS |
| TCACATAGGGGTAGAAGAGA+TGG | 0.556124 | 4_3:-50139400 | Msa0645290:CDS |
| CATGGGAACGCCGAAAATCA+GGG | 0.556357 | 4_3:+50138779 | None:intergenic |
| ATATGGACGTCGATTTCAAT+CGG | 0.561835 | 4_3:-50138567 | Msa0645290:CDS |
| TCACAGTTTCTCCTGAGTGT+TGG | 0.566113 | 4_3:+50139316 | None:intergenic |
| ATATCCGACACAAAATGTAA+TGG | 0.569412 | 4_3:-50139079 | Msa0645290:CDS |
| GTAATAGAATGATTCAAGAA+AGG | 0.570517 | 4_3:-50139341 | Msa0645290:CDS |
| ACTTGTTGTTGGACATGGAG+TGG | 0.572106 | 4_3:-50139364 | Msa0645290:CDS |
| CTTGTTGTTGGACATGGAGT+GGG | 0.572884 | 4_3:-50139363 | Msa0645290:CDS |
| CAAGAAAGGTTCCAACACTC+AGG | 0.575639 | 4_3:-50139327 | Msa0645290:CDS |
| TTAAAGCCCACTAATCACAT+AGG | 0.582939 | 4_3:-50139414 | Msa0645290:CDS |
| GTTAGCTCACTAGTTCTACA+TGG | 0.598706 | 4_3:+50139552 | None:intergenic |
| ATAATATTAATACCTGGAGG+AGG | 0.608585 | 4_3:+50138940 | None:intergenic |
| TGGGTGAAAGAAGTGTTACA+AGG | 0.613940 | 4_3:-50139519 | Msa0645290:CDS |
| GTAGAACTAGTGAGCTAACA+GGG | 0.616141 | 4_3:-50139548 | Msa0645290:CDS |
| TGAGCTAACAGGGCATGCAT+GGG | 0.618880 | 4_3:-50139538 | Msa0645290:CDS |
| ACGATAATCATCATGATCAA+GGG | 0.621055 | 4_3:+50138525 | None:intergenic |
| GTCACTAGCACTAACCACAC+AGG | 0.623607 | 4_3:+50139128 | None:intergenic |
| AACATGATTCATCTCAGATG+AGG | 0.624817 | 4_3:+50138459 | None:intergenic |
| TCACTGAACAAAGGATCTTG+AGG | 0.628315 | 4_3:+50139234 | None:intergenic |
| GCATGACTATCACTGAACAA+AGG | 0.657979 | 4_3:+50139225 | None:intergenic |
| TCACTAGCACTAACCACACA+GGG | 0.675818 | 4_3:+50139129 | None:intergenic |
| AATGCTATAGGAGCAATCGA+TGG | 0.684778 | 4_3:-50139162 | Msa0645290:CDS |
| GGGTGAAAGAAGTGTTACAA+GGG | 0.685898 | 4_3:-50139518 | Msa0645290:CDS |
| CCGGTTATCCAACACCGATG+GGG | 0.699683 | 4_3:-50138837 | Msa0645290:CDS |
| TATGGACCAAGATACCCCAT+CGG | 0.700535 | 4_3:+50138823 | None:intergenic |
| AAAGCCCACTAATCACATAG+GGG | 0.730444 | 4_3:-50139412 | Msa0645290:CDS |
| TGGTACGCATATTCCCTGTG+TGG | 0.730498 | 4_3:-50139142 | Msa0645290:CDS |
| GGGAACGCCGAAAATCAGGG+AGG | 0.802967 | 4_3:+50138782 | None:intergenic |
| TGGGTTTGAAAATAACAACG+AGG | 0.807645 | 4_3:-50138758 | Msa0645290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATTTAATTTATTTTT+AGG | - | chr4_3:50139191-50139210 | Msa0645290:CDS | 0.0% |
| !!! | TTATAATTTAATTTATTTTT+AGG | - | chr4_3:50139191-50139210 | Msa0645290:CDS | 0.0% |
| !! | TACTAATAAATAAGTTGTAA+AGG | + | chr4_3:50139157-50139176 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | - | chr4_3:50139205-50139224 | Msa0645290:CDS | 15.0% |
| !! | TACTAATAAATAAGTTGTAA+AGG | + | chr4_3:50139157-50139176 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTATGTATTATT+TGG | - | chr4_3:50139205-50139224 | Msa0645290:CDS | 15.0% |
| !! | TAAAGGATAATATTAATACC+TGG | + | chr4_3:50139140-50139159 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | - | chr4_3:50139342-50139361 | Msa0645290:CDS | 20.0% |
| !!! | TGTGTTTTAATTGTGAATTT+AGG | + | chr4_3:50139428-50139447 | None:intergenic | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | - | chr4_3:50139474-50139493 | Msa0645290:CDS | 20.0% |
| !! | TAAAGGATAATATTAATACC+TGG | + | chr4_3:50139140-50139159 | None:intergenic | 20.0% |
| !! | ATTATTATCACTCAAGTTTA+AGG | - | chr4_3:50139342-50139361 | Msa0645290:CDS | 20.0% |
| !!! | TGTGTTTTAATTGTGAATTT+AGG | + | chr4_3:50139428-50139447 | None:intergenic | 20.0% |
| !! | CTATACATAACTTTATTAGA+AGG | - | chr4_3:50139474-50139493 | Msa0645290:CDS | 20.0% |
| ! | GTGCAAAGTTTATGAAAAAT+AGG | + | chr4_3:50138618-50138637 | None:intergenic | 25.0% |
| ! | GTAATAGAATGATTCAAGAA+AGG | - | chr4_3:50138730-50138749 | Msa0645290:CDS | 25.0% |
| ! | CCTATAGCATTCTTAAAAAA+TGG | + | chr4_3:50138900-50138919 | None:intergenic | 25.0% |
| !!! | CCATTTTTTAAGAATGCTAT+AGG | - | chr4_3:50138897-50138916 | Msa0645290:intron | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | - | chr4_3:50139208-50139227 | Msa0645290:CDS | 25.0% |
| ! | GTGCAAAGTTTATGAAAAAT+AGG | + | chr4_3:50138618-50138637 | None:intergenic | 25.0% |
| ! | GTAATAGAATGATTCAAGAA+AGG | - | chr4_3:50138730-50138749 | Msa0645290:CDS | 25.0% |
| ! | CCTATAGCATTCTTAAAAAA+TGG | + | chr4_3:50138900-50138919 | None:intergenic | 25.0% |
| !!! | CCATTTTTTAAGAATGCTAT+AGG | - | chr4_3:50138897-50138916 | Msa0645290:intron | 25.0% |
| ! | TTTAGGTATGTATTATTTGG+TGG | - | chr4_3:50139208-50139227 | Msa0645290:CDS | 25.0% |
| ! | TTTTGAACAAGCTTCTTTAG+TGG | - | chr4_3:50138452-50138471 | Msa0645290:CDS | 30.0% |
| TTGTTATGAGATGTTTCGAA+TGG | - | chr4_3:50138587-50138606 | Msa0645290:CDS | 30.0% | |
| TGCACTAAATTAGTTGATCA+TGG | - | chr4_3:50138633-50138652 | Msa0645290:CDS | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | + | chr4_3:50138823-50138842 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | + | chr4_3:50138888-50138907 | None:intergenic | 30.0% | |
| AGTGACCAAACTAGATTTAT+TGG | - | chr4_3:50138960-50138979 | Msa0645290:CDS | 30.0% | |
| TTCGTCCAATAAATCTAGTT+TGG | + | chr4_3:50138968-50138987 | None:intergenic | 30.0% | |
| AACTAGATTTATTGGACGAA+AGG | - | chr4_3:50138968-50138987 | Msa0645290:CDS | 30.0% | |
| ACTAGATTTATTGGACGAAA+GGG | - | chr4_3:50138969-50138988 | Msa0645290:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | - | chr4_3:50138992-50139011 | Msa0645290:CDS | 30.0% | |
| ! | ACAACCATTACATTTTGTGT+CGG | + | chr4_3:50138999-50139018 | None:intergenic | 30.0% |
| ATGTAATGGTTGTATGTGAT+TGG | - | chr4_3:50139006-50139025 | Msa0645290:CDS | 30.0% | |
| ATAATATTAATACCTGGAGG+AGG | + | chr4_3:50139134-50139153 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | + | chr4_3:50139137-50139156 | None:intergenic | 30.0% | |
| !!! | GTTGTTATTTTCAAACCCAT+GGG | + | chr4_3:50139312-50139331 | None:intergenic | 30.0% |
| ! | TGCACAATAGAAAGAACTTT+TGG | - | chr4_3:50139365-50139384 | Msa0645290:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | - | chr4_3:50139372-50139391 | Msa0645290:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | - | chr4_3:50139487-50139506 | Msa0645290:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | + | chr4_3:50139549-50139568 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | + | chr4_3:50139550-50139569 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | - | chr4_3:50139562-50139581 | Msa0645290:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | + | chr4_3:50139575-50139594 | None:intergenic | 30.0% | |
| ! | TTTTGAACAAGCTTCTTTAG+TGG | - | chr4_3:50138452-50138471 | Msa0645290:CDS | 30.0% |
| TTGTTATGAGATGTTTCGAA+TGG | - | chr4_3:50138587-50138606 | Msa0645290:CDS | 30.0% | |
| TGCACTAAATTAGTTGATCA+TGG | - | chr4_3:50138633-50138652 | Msa0645290:CDS | 30.0% | |
| ! | TTGAGGCTTTATATATTCGA+TGG | + | chr4_3:50138823-50138842 | None:intergenic | 30.0% |
| TTAAAAAATGGCCAATATCG+TGG | + | chr4_3:50138888-50138907 | None:intergenic | 30.0% | |
| AGTGACCAAACTAGATTTAT+TGG | - | chr4_3:50138960-50138979 | Msa0645290:CDS | 30.0% | |
| TTCGTCCAATAAATCTAGTT+TGG | + | chr4_3:50138968-50138987 | None:intergenic | 30.0% | |
| AACTAGATTTATTGGACGAA+AGG | - | chr4_3:50138968-50138987 | Msa0645290:CDS | 30.0% | |
| ACTAGATTTATTGGACGAAA+GGG | - | chr4_3:50138969-50138988 | Msa0645290:CDS | 30.0% | |
| ATATCCGACACAAAATGTAA+TGG | - | chr4_3:50138992-50139011 | Msa0645290:CDS | 30.0% | |
| ! | ACAACCATTACATTTTGTGT+CGG | + | chr4_3:50138999-50139018 | None:intergenic | 30.0% |
| ATGTAATGGTTGTATGTGAT+TGG | - | chr4_3:50139006-50139025 | Msa0645290:CDS | 30.0% | |
| ATAATATTAATACCTGGAGG+AGG | + | chr4_3:50139134-50139153 | None:intergenic | 30.0% | |
| AGGATAATATTAATACCTGG+AGG | + | chr4_3:50139137-50139156 | None:intergenic | 30.0% | |
| !!! | GTTGTTATTTTCAAACCCAT+GGG | + | chr4_3:50139312-50139331 | None:intergenic | 30.0% |
| ! | TGCACAATAGAAAGAACTTT+TGG | - | chr4_3:50139365-50139384 | Msa0645290:CDS | 30.0% |
| !! | TAGAAAGAACTTTTGGTGTA+TGG | - | chr4_3:50139372-50139391 | Msa0645290:CDS | 30.0% |
| TATTAGAAGGAATGCTGATA+TGG | - | chr4_3:50139487-50139506 | Msa0645290:CDS | 30.0% | |
| ACGATAATCATCATGATCAA+GGG | + | chr4_3:50139549-50139568 | None:intergenic | 30.0% | |
| TACGATAATCATCATGATCA+AGG | + | chr4_3:50139550-50139569 | None:intergenic | 30.0% | |
| TTATCGTAGACCAGTTAATT+TGG | - | chr4_3:50139562-50139581 | Msa0645290:CDS | 30.0% | |
| TGAGATGAATCCAAATTAAC+TGG | + | chr4_3:50139575-50139594 | None:intergenic | 30.0% | |
| AACATCTCATAACAACGAGT+TGG | + | chr4_3:50138582-50138601 | None:intergenic | 35.0% | |
| TTAAAGCCCACTAATCACAT+AGG | - | chr4_3:50138657-50138676 | Msa0645290:CDS | 35.0% | |
| TAAAGCCCACTAATCACATA+GGG | - | chr4_3:50138658-50138677 | Msa0645290:CDS | 35.0% | |
| !! | GCAATGTTCTTACTTGTTGT+TGG | - | chr4_3:50138696-50138715 | Msa0645290:CDS | 35.0% |
| !! | TTCTTACTTGTTGTTGGACA+TGG | - | chr4_3:50138702-50138721 | Msa0645290:CDS | 35.0% |
| TTCAAAGTGATCCACGATAT+TGG | - | chr4_3:50138874-50138893 | Msa0645290:intron | 35.0% | |
| !!! | TGCTTCACTTTTGTTTTAGC+TGG | - | chr4_3:50139035-50139054 | Msa0645290:CDS | 35.0% |
| !!! | TCACTTTTGTTTTAGCTGGA+TGG | - | chr4_3:50139039-50139058 | Msa0645290:CDS | 35.0% |
| !!! | CACTTTTGTTTTAGCTGGAT+GGG | - | chr4_3:50139040-50139059 | Msa0645290:CDS | 35.0% |
| ! | ATGTATTATTTGGTGGATGC+CGG | - | chr4_3:50139215-50139234 | Msa0645290:CDS | 35.0% |
| ! | TGATAACGTTCACATCTGTA+TGG | + | chr4_3:50139269-50139288 | None:intergenic | 35.0% |
| !!! | CGTTGTTATTTTCAAACCCA+TGG | + | chr4_3:50139313-50139332 | None:intergenic | 35.0% |
| TGGGTTTGAAAATAACAACG+AGG | - | chr4_3:50139313-50139332 | Msa0645290:CDS | 35.0% | |
| !! | ATATGGACGTCGATTTCAAT+CGG | - | chr4_3:50139504-50139523 | Msa0645290:CDS | 35.0% |
| AACATGATTCATCTCAGATG+AGG | + | chr4_3:50139615-50139634 | None:intergenic | 35.0% | |
| GATGAATCATGTTCGAAACT+CGG | - | chr4_3:50139622-50139641 | Msa0645290:CDS | 35.0% | |
| AACATCTCATAACAACGAGT+TGG | + | chr4_3:50138582-50138601 | None:intergenic | 35.0% | |
| TTAAAGCCCACTAATCACAT+AGG | - | chr4_3:50138657-50138676 | Msa0645290:CDS | 35.0% | |
| TAAAGCCCACTAATCACATA+GGG | - | chr4_3:50138658-50138677 | Msa0645290:CDS | 35.0% | |
| !! | GCAATGTTCTTACTTGTTGT+TGG | - | chr4_3:50138696-50138715 | Msa0645290:CDS | 35.0% |
| !! | TTCTTACTTGTTGTTGGACA+TGG | - | chr4_3:50138702-50138721 | Msa0645290:CDS | 35.0% |
| TTCAAAGTGATCCACGATAT+TGG | - | chr4_3:50138874-50138893 | Msa0645290:intron | 35.0% | |
| !!! | TGCTTCACTTTTGTTTTAGC+TGG | - | chr4_3:50139035-50139054 | Msa0645290:CDS | 35.0% |
| !!! | TCACTTTTGTTTTAGCTGGA+TGG | - | chr4_3:50139039-50139058 | Msa0645290:CDS | 35.0% |
| !!! | CACTTTTGTTTTAGCTGGAT+GGG | - | chr4_3:50139040-50139059 | Msa0645290:CDS | 35.0% |
| ! | ATGTATTATTTGGTGGATGC+CGG | - | chr4_3:50139215-50139234 | Msa0645290:CDS | 35.0% |
| ! | TGATAACGTTCACATCTGTA+TGG | + | chr4_3:50139269-50139288 | None:intergenic | 35.0% |
| !!! | CGTTGTTATTTTCAAACCCA+TGG | + | chr4_3:50139313-50139332 | None:intergenic | 35.0% |
| TGGGTTTGAAAATAACAACG+AGG | - | chr4_3:50139313-50139332 | Msa0645290:CDS | 35.0% | |
| !! | ATATGGACGTCGATTTCAAT+CGG | - | chr4_3:50139504-50139523 | Msa0645290:CDS | 35.0% |
| AACATGATTCATCTCAGATG+AGG | + | chr4_3:50139615-50139634 | None:intergenic | 35.0% | |
| GATGAATCATGTTCGAAACT+CGG | - | chr4_3:50139622-50139641 | Msa0645290:CDS | 35.0% | |
| !! | GTTAGCTCACTAGTTCTACA+TGG | + | chr4_3:50138522-50138541 | None:intergenic | 40.0% |
| TGTAGAACTAGTGAGCTAAC+AGG | - | chr4_3:50138522-50138541 | Msa0645290:CDS | 40.0% | |
| GTAGAACTAGTGAGCTAACA+GGG | - | chr4_3:50138523-50138542 | Msa0645290:CDS | 40.0% | |
| !! | TGGGTGAAAGAAGTGTTACA+AGG | - | chr4_3:50138552-50138571 | Msa0645290:CDS | 40.0% |
| !! | GGGTGAAAGAAGTGTTACAA+GGG | - | chr4_3:50138553-50138572 | Msa0645290:CDS | 40.0% |
| AAAGCCCACTAATCACATAG+GGG | - | chr4_3:50138659-50138678 | Msa0645290:CDS | 40.0% | |
| TCTACCCCTATGTGATTAGT+GGG | + | chr4_3:50138666-50138685 | None:intergenic | 40.0% | |
| TTCTACCCCTATGTGATTAG+TGG | + | chr4_3:50138667-50138686 | None:intergenic | 40.0% | |
| TCACTGAACAAAGGATCTTG+AGG | + | chr4_3:50138840-50138859 | None:intergenic | 40.0% | |
| GCATGACTATCACTGAACAA+AGG | + | chr4_3:50138849-50138868 | None:intergenic | 40.0% | |
| AATGCTATAGGAGCAATCGA+TGG | - | chr4_3:50138909-50138928 | Msa0645290:intron | 40.0% | |
| !!! | TTTGTTTTAGCTGGATGGGA+AGG | - | chr4_3:50139044-50139063 | Msa0645290:CDS | 40.0% |
| GTCAAAAACACGAGCATCAT+GGG | + | chr4_3:50139075-50139094 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | + | chr4_3:50139097-50139116 | None:intergenic | 40.0% | |
| ! | GTTATCACCTCCCTGATTTT+CGG | - | chr4_3:50139282-50139301 | Msa0645290:CDS | 40.0% |
| TGAAGTCGTTGTTGCAACAA+TGG | - | chr4_3:50139451-50139470 | Msa0645290:CDS | 40.0% | |
| !! | GTTAGCTCACTAGTTCTACA+TGG | + | chr4_3:50138522-50138541 | None:intergenic | 40.0% |
| TGTAGAACTAGTGAGCTAAC+AGG | - | chr4_3:50138522-50138541 | Msa0645290:CDS | 40.0% | |
| GTAGAACTAGTGAGCTAACA+GGG | - | chr4_3:50138523-50138542 | Msa0645290:CDS | 40.0% | |
| !! | TGGGTGAAAGAAGTGTTACA+AGG | - | chr4_3:50138552-50138571 | Msa0645290:CDS | 40.0% |
| !! | GGGTGAAAGAAGTGTTACAA+GGG | - | chr4_3:50138553-50138572 | Msa0645290:CDS | 40.0% |
| AAAGCCCACTAATCACATAG+GGG | - | chr4_3:50138659-50138678 | Msa0645290:CDS | 40.0% | |
| TCTACCCCTATGTGATTAGT+GGG | + | chr4_3:50138666-50138685 | None:intergenic | 40.0% | |
| TTCTACCCCTATGTGATTAG+TGG | + | chr4_3:50138667-50138686 | None:intergenic | 40.0% | |
| TCACTGAACAAAGGATCTTG+AGG | + | chr4_3:50138840-50138859 | None:intergenic | 40.0% | |
| GCATGACTATCACTGAACAA+AGG | + | chr4_3:50138849-50138868 | None:intergenic | 40.0% | |
| AATGCTATAGGAGCAATCGA+TGG | - | chr4_3:50138909-50138928 | Msa0645290:intron | 40.0% | |
| !!! | TTTGTTTTAGCTGGATGGGA+AGG | - | chr4_3:50139044-50139063 | Msa0645290:CDS | 40.0% |
| GTCAAAAACACGAGCATCAT+GGG | + | chr4_3:50139075-50139094 | None:intergenic | 40.0% | |
| GATTTGCATTTGTGAGAGCA+TGG | + | chr4_3:50139097-50139116 | None:intergenic | 40.0% | |
| ! | GTTATCACCTCCCTGATTTT+CGG | - | chr4_3:50139282-50139301 | Msa0645290:CDS | 40.0% |
| TGAAGTCGTTGTTGCAACAA+TGG | - | chr4_3:50139451-50139470 | Msa0645290:CDS | 40.0% | |
| TTCTTTAGTGGCTGCACTGA+TGG | - | chr4_3:50138464-50138483 | Msa0645290:CDS | 45.0% | |
| ! | TCTTTAGTGGCTGCACTGAT+GGG | - | chr4_3:50138465-50138484 | Msa0645290:CDS | 45.0% |
| TCACATAGGGGTAGAAGAGA+TGG | - | chr4_3:50138671-50138690 | Msa0645290:CDS | 45.0% | |
| !! | ACTTGTTGTTGGACATGGAG+TGG | - | chr4_3:50138707-50138726 | Msa0645290:CDS | 45.0% |
| !! | CTTGTTGTTGGACATGGAGT+GGG | - | chr4_3:50138708-50138727 | Msa0645290:CDS | 45.0% |
| CAAGAAAGGTTCCAACACTC+AGG | - | chr4_3:50138744-50138763 | Msa0645290:CDS | 45.0% | |
| TCACAGTTTCTCCTGAGTGT+TGG | + | chr4_3:50138758-50138777 | None:intergenic | 45.0% | |
| TCACTAGCACTAACCACACA+GGG | + | chr4_3:50138945-50138964 | None:intergenic | 45.0% | |
| GGTCAAAAACACGAGCATCA+TGG | + | chr4_3:50139076-50139095 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | - | chr4_3:50139119-50139138 | Msa0645290:CDS | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | + | chr4_3:50139128-50139147 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | + | chr4_3:50139251-50139270 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | - | chr4_3:50139511-50139530 | Msa0645290:CDS | 45.0% |
| TTCTTTAGTGGCTGCACTGA+TGG | - | chr4_3:50138464-50138483 | Msa0645290:CDS | 45.0% | |
| ! | TCTTTAGTGGCTGCACTGAT+GGG | - | chr4_3:50138465-50138484 | Msa0645290:CDS | 45.0% |
| TCACATAGGGGTAGAAGAGA+TGG | - | chr4_3:50138671-50138690 | Msa0645290:CDS | 45.0% | |
| !! | ACTTGTTGTTGGACATGGAG+TGG | - | chr4_3:50138707-50138726 | Msa0645290:CDS | 45.0% |
| !! | CTTGTTGTTGGACATGGAGT+GGG | - | chr4_3:50138708-50138727 | Msa0645290:CDS | 45.0% |
| CAAGAAAGGTTCCAACACTC+AGG | - | chr4_3:50138744-50138763 | Msa0645290:CDS | 45.0% | |
| TCACAGTTTCTCCTGAGTGT+TGG | + | chr4_3:50138758-50138777 | None:intergenic | 45.0% | |
| TCACTAGCACTAACCACACA+GGG | + | chr4_3:50138945-50138964 | None:intergenic | 45.0% | |
| GGTCAAAAACACGAGCATCA+TGG | + | chr4_3:50139076-50139095 | None:intergenic | 45.0% | |
| ! | AATTTTCCACATCCTCCTCC+AGG | - | chr4_3:50139119-50139138 | Msa0645290:CDS | 45.0% |
| TTAATACCTGGAGGAGGATG+TGG | + | chr4_3:50139128-50139147 | None:intergenic | 45.0% | |
| TATGGACCAAGATACCCCAT+CGG | + | chr4_3:50139251-50139270 | None:intergenic | 45.0% | |
| !! | CGTCGATTTCAATCGGTATG+AGG | - | chr4_3:50139511-50139530 | Msa0645290:CDS | 45.0% |
| TGAGCTAACAGGGCATGCAT+GGG | - | chr4_3:50138533-50138552 | Msa0645290:CDS | 50.0% | |
| TGGTACGCATATTCCCTGTG+TGG | - | chr4_3:50138929-50138948 | Msa0645290:intron | 50.0% | |
| GTCACTAGCACTAACCACAC+AGG | + | chr4_3:50138946-50138965 | None:intergenic | 50.0% | |
| CATGGGAACGCCGAAAATCA+GGG | + | chr4_3:50139295-50139314 | None:intergenic | 50.0% | |
| ! | CTGATTTTCGGCGTTCCCAT+GGG | - | chr4_3:50139294-50139313 | Msa0645290:CDS | 50.0% |
| TGAGCTAACAGGGCATGCAT+GGG | - | chr4_3:50138533-50138552 | Msa0645290:CDS | 50.0% | |
| TGGTACGCATATTCCCTGTG+TGG | - | chr4_3:50138929-50138948 | Msa0645290:intron | 50.0% | |
| GTCACTAGCACTAACCACAC+AGG | + | chr4_3:50138946-50138965 | None:intergenic | 50.0% | |
| CATGGGAACGCCGAAAATCA+GGG | + | chr4_3:50139295-50139314 | None:intergenic | 50.0% | |
| ! | CTGATTTTCGGCGTTCCCAT+GGG | - | chr4_3:50139294-50139313 | Msa0645290:CDS | 50.0% |
| ! | GCTGCACTGATGGGTGAGTA+TGG | - | chr4_3:50138474-50138493 | Msa0645290:CDS | 55.0% |
| GTGAGCTAACAGGGCATGCA+TGG | - | chr4_3:50138532-50138551 | Msa0645290:CDS | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | - | chr4_3:50139232-50139251 | Msa0645290:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | - | chr4_3:50139233-50139252 | Msa0645290:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | + | chr4_3:50139237-50139256 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | - | chr4_3:50139234-50139253 | Msa0645290:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | + | chr4_3:50139245-50139264 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | - | chr4_3:50139242-50139261 | Msa0645290:CDS | 55.0% |
| CCATGGGAACGCCGAAAATC+AGG | + | chr4_3:50139296-50139315 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+TGG | - | chr4_3:50139293-50139312 | Msa0645290:CDS | 55.0% |
| ! | GCTGCACTGATGGGTGAGTA+TGG | - | chr4_3:50138474-50138493 | Msa0645290:CDS | 55.0% |
| GTGAGCTAACAGGGCATGCA+TGG | - | chr4_3:50138532-50138551 | Msa0645290:CDS | 55.0% | |
| ! | TGCCGGTTATCCAACACCGA+TGG | - | chr4_3:50139232-50139251 | Msa0645290:CDS | 55.0% |
| GCCGGTTATCCAACACCGAT+GGG | - | chr4_3:50139233-50139252 | Msa0645290:CDS | 55.0% | |
| !! | CCCCATCGGTGTTGGATAAC+CGG | + | chr4_3:50139237-50139256 | None:intergenic | 55.0% |
| CCGGTTATCCAACACCGATG+GGG | - | chr4_3:50139234-50139253 | Msa0645290:CDS | 55.0% | |
| CCAAGATACCCCATCGGTGT+TGG | + | chr4_3:50139245-50139264 | None:intergenic | 55.0% | |
| ! | CCAACACCGATGGGGTATCT+TGG | - | chr4_3:50139242-50139261 | Msa0645290:CDS | 55.0% |
| CCATGGGAACGCCGAAAATC+AGG | + | chr4_3:50139296-50139315 | None:intergenic | 55.0% | |
| ! | CCTGATTTTCGGCGTTCCCA+TGG | - | chr4_3:50139293-50139312 | Msa0645290:CDS | 55.0% |
| GGGAACGCCGAAAATCAGGG+AGG | + | chr4_3:50139292-50139311 | None:intergenic | 60.0% | |
| GGGAACGCCGAAAATCAGGG+AGG | + | chr4_3:50139292-50139311 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 50138411 | 50139682 | 50138411 | ID=Msa0645290;Name=Msa0645290 |
| chr4_3 | mRNA | 50138411 | 50139682 | 50138411 | ID=Msa0645290-mRNA-1;Parent=Msa0645290;Name=Msa0645290-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|1|0|1|1|1|2|0|399 |
| chr4_3 | exon | 50138953 | 50139682 | 50138953 | ID=Msa0645290-mRNA-1:exon:11965;Parent=Msa0645290-mRNA-1 |
| chr4_3 | exon | 50138411 | 50138880 | 50138411 | ID=Msa0645290-mRNA-1:exon:11964;Parent=Msa0645290-mRNA-1 |
| chr4_3 | CDS | 50138953 | 50139682 | 50138953 | ID=Msa0645290-mRNA-1:cds;Parent=Msa0645290-mRNA-1 |
| chr4_3 | CDS | 50138411 | 50138880 | 50138411 | ID=Msa0645290-mRNA-1:cds;Parent=Msa0645290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
