AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0136940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136940 MtrunA17_Chr1g0208821 97.374 495 13 0 1 495 1 495 0.0 976
Msa0136940 MtrunA17_Chr1g0208881 58.714 482 190 1 8 489 1 473 0.0 577
Msa0136940 MtrunA17_Chr1g0208891 58.787 478 187 1 8 485 1 468 0.0 577
Msa0136940 MtrunA17_Chr7g0251331 55.158 475 207 3 23 492 4 477 0.0 534
Msa0136940 MtrunA17_Chr6g0449061 48.760 484 241 2 13 495 8 485 1.12e-167 482
Msa0136940 MtrunA17_Chr6g0483381 50.943 477 227 2 11 485 2 473 4.47e-166 478
Msa0136940 MtrunA17_Chr6g0483361 49.476 477 232 2 11 485 2 471 6.47e-162 467
Msa0136940 MtrunA17_Chr6g0477961 48.596 463 235 2 26 485 11 473 8.79e-151 439
Msa0136940 MtrunA17_Chr1g0208791 46.610 472 252 0 8 479 10 481 1.92e-147 431
Msa0136940 MtrunA17_Chr8g0392601 45.714 455 244 1 29 483 3 454 4.77e-135 399
Msa0136940 MtrunA17_Chr6g0483351 51.459 377 181 1 100 474 1 377 2.52e-132 390
Msa0136940 MtrunA17_Chr7g0251321 49.870 385 172 3 100 483 1 365 1.47e-127 376
Msa0136940 MtrunA17_Chr6g0483331 44.295 447 248 1 40 485 11 457 1.66e-124 371
Msa0136940 MtrunA17_Chr6g0483341 41.719 477 273 2 14 485 10 486 4.93e-124 371
Msa0136940 MtrunA17_Chr2g0317131 38.478 473 291 0 9 481 11 483 1.31e-108 331
Msa0136940 MtrunA17_Chr2g0317151 39.076 476 285 2 8 481 1 473 4.33e-108 330
Msa0136940 MtrunA17_Chr4g0024501 37.083 480 295 1 11 483 27 506 1.62e-105 324
Msa0136940 MtrunA17_Chr6g0483161 44.562 377 190 1 98 474 1 358 1.69e-105 319
Msa0136940 MtrunA17_Chr2g0317161 37.740 469 282 2 18 481 8 471 7.72e-104 319
Msa0136940 MtrunA17_Chr2g0322671 36.939 490 299 2 4 483 5 494 1.86e-102 316
Msa0136940 MtrunA17_Chr2g0317171 36.920 474 284 3 18 481 9 477 1.07e-98 306
Msa0136940 MtrunA17_Chr5g0428251 33.193 476 314 2 18 491 32 505 1.69e-89 284
Msa0136940 MtrunA17_Chr2g0317221 39.487 390 226 2 97 481 7 391 3.97e-89 278
Msa0136940 MtrunA17_Chr2g0288281 37.760 384 239 0 100 483 1 384 5.91e-86 270
Msa0136940 MtrunA17_Chr6g0467321 31.014 503 331 7 5 493 4 504 1.13e-85 273
Msa0136940 MtrunA17_Chr5g0412771 34.910 444 284 3 42 483 57 497 1.59e-83 267
Msa0136940 MtrunA17_Chr3g0140931 33.473 478 299 6 12 481 25 491 4.13e-83 267
Msa0136940 MtrunA17_Chr5g0397991 32.675 456 301 2 29 481 53 505 8.39e-83 266
Msa0136940 MtrunA17_Chr8g0368001 34.228 447 289 3 39 483 48 491 1.39e-81 262
Msa0136940 MtrunA17_Chr5g0412541 35.520 442 279 4 42 480 37 475 1.28e-80 259
Msa0136940 MtrunA17_Chr5g0442331 33.538 489 314 4 10 492 11 494 2.26e-80 259
Msa0136940 MtrunA17_Chr8g0389801 32.823 457 301 4 26 480 8 460 6.52e-79 254
Msa0136940 MtrunA17_Chr1g0203791 32.059 471 307 5 16 481 42 504 1.89e-78 254
Msa0136940 MtrunA17_Chr7g0254511 33.196 485 307 7 1 483 1 470 7.71e-76 246
Msa0136940 MtrunA17_Chr6g0473701 30.952 462 309 3 27 481 110 568 1.74e-75 249
Msa0136940 MtrunA17_Chr7g0254521 34.607 445 286 3 41 483 31 472 1.14e-74 243
Msa0136940 MtrunA17_Chr3g0132531 33.613 476 304 6 10 480 17 485 3.34e-74 243
Msa0136940 MtrunA17_Chr1g0154441 36.176 387 240 4 100 483 1 383 5.69e-71 231
Msa0136940 MtrunA17_Chr6g0468531 32.914 477 311 4 8 480 1 472 3.19e-68 226
Msa0136940 MtrunA17_Chr6g0468521 32.568 479 309 7 8 480 1 471 4.14e-68 226
Msa0136940 MtrunA17_Chr7g0254531 34.635 384 250 1 100 483 1 383 1.77e-65 217
Msa0136940 MtrunA17_Chr1g0202761 30.952 462 317 1 22 483 24 483 1.61e-63 214
Msa0136940 MtrunA17_Chr4g0013031 28.370 497 312 10 19 479 18 506 4.77e-62 211
Msa0136940 MtrunA17_Chr5g0412571 34.704 389 248 4 98 483 38 423 5.75e-62 208
Msa0136940 MtrunA17_Chr2g0295631 29.322 457 307 2 41 481 20 476 2.52e-61 209
Msa0136940 MtrunA17_Chr6g0460541 33.995 403 253 4 98 492 3 400 1.62e-60 204
Msa0136940 MtrunA17_Chr6g0468511 32.735 446 290 6 8 451 1 438 7.64e-60 204
Msa0136940 MtrunA17_Chr7g0248051 31.210 471 316 2 4 474 39 501 2.08e-56 196
Msa0136940 MtrunA17_Chr6g0483264 47.059 204 108 0 280 483 1 204 5.11e-53 178
Msa0136940 MtrunA17_Chr7g0254501 34.035 285 186 1 199 483 16 298 8.17e-51 176
Msa0136940 MtrunA17_Chr6g0483241 48.066 181 94 0 98 278 1 181 4.58e-49 166
Msa0136940 MtrunA17_Chr8g0364761 34.237 295 185 5 22 309 30 322 2.25e-45 161
Msa0136940 MtrunA17_Chr3g0132541 31.849 292 198 1 42 333 42 332 5.41e-40 149
Msa0136940 MtrunA17_Chr6g0487091 33.557 298 191 4 185 480 97 389 1.31e-39 148
Msa0136940 MtrunA17_Chr5g0440661 28.338 367 200 4 100 466 1 304 6.61e-37 138
Msa0136940 MtrunA17_Chr6g0483221 43.919 148 83 0 327 474 6 153 2.46e-35 129
Msa0136940 MtrunA17_Chr6g0460521 37.198 207 130 0 277 483 1 207 8.37e-33 124
Msa0136940 MtrunA17_Chr6g0483261 44.586 157 87 0 327 483 6 162 3.93e-32 121
Msa0136940 MtrunA17_Chr5g0398571 26.871 294 198 3 196 480 1 286 1.37e-27 112
Msa0136940 MtrunA17_Chr8g0364751 39.024 164 100 0 320 483 12 175 2.54e-27 108
Msa0136940 MtrunA17_Chr7g0215591 91.379 58 5 0 350 407 1 58 4.03e-26 101
Msa0136940 MtrunA17_Chr1g0208901 35.795 176 63 3 28 203 4 129 7.92e-24 96.7
Msa0136940 MtrunA17_Chr5g0442311 30.168 179 125 0 100 278 1 179 3.87e-21 90.9
Msa0136940 MtrunA17_Chr6g0460531 28.148 270 171 7 18 278 5 260 5.81e-21 92.4
Msa0136940 MtrunA17_Chr6g0483281 49.296 71 36 0 211 281 5 75 1.42e-13 66.2
Msa0136940 MtrunA17_Chr7g0254491 34.545 110 68 1 13 122 6 111 2.35e-12 63.9
Msa0136940 MtrunA17_Chr4g0025551 30.719 153 80 5 147 297 28 156 9.19e-12 63.2
Msa0136940 MtrunA17_Chr5g0398551 38.462 78 48 0 38 115 40 117 4.34e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136940 AT1G15170.1 59.834 483 186 2 1 483 1 475 0.0 598
Msa0136940 AT1G15150.1 59.130 460 188 0 24 483 13 472 0.0 592
Msa0136940 AT1G15160.1 59.355 465 189 0 19 483 8 472 0.0 592
Msa0136940 AT1G71140.1 60.087 461 179 1 23 483 12 467 0.0 576
Msa0136940 AT1G15180.1 59.006 483 191 1 1 483 1 476 0.0 568
Msa0136940 AT1G15170.2 65.169 356 124 0 128 483 1 356 1.59e-176 500
Msa0136940 AT1G15150.2 62.640 356 133 0 128 483 1 356 1.66e-171 488
Msa0136940 AT2G04050.1 53.626 455 207 1 40 494 25 475 2.29e-163 471
Msa0136940 AT2G04080.1 51.893 449 214 2 40 487 25 472 8.74e-163 469
Msa0136940 AT2G04100.1 49.372 478 233 2 8 483 1 471 1.66e-160 464
Msa0136940 AT2G04040.1 51.613 465 217 4 33 494 16 475 1.25e-159 462
Msa0136940 AT2G04080.2 49.787 470 222 4 8 474 1 459 2.19e-158 458
Msa0136940 AT2G04070.1 51.345 446 217 0 42 487 27 472 1.65e-157 456
Msa0136940 AT2G04100.2 48.950 476 233 3 8 480 1 469 2.36e-156 453
Msa0136940 AT2G04090.1 48.899 454 232 0 30 483 18 471 1.04e-155 452
Msa0136940 AT1G66760.2 47.817 481 240 3 5 485 2 471 8.94e-155 449
Msa0136940 AT1G66780.1 48.596 463 238 0 24 486 17 479 4.59e-153 445
Msa0136940 AT5G52450.1 48.857 481 236 2 25 495 3 483 5.77e-153 445
Msa0136940 AT1G64820.1 45.155 485 256 2 11 493 6 482 2.61e-151 441
Msa0136940 AT1G66760.1 47.357 473 238 3 5 477 2 463 2.84e-149 435
Msa0136940 AT1G73700.1 49.661 443 223 0 41 483 23 465 1.72e-148 433
Msa0136940 AT2G34360.1 47.495 459 228 4 25 482 15 461 8.00e-145 424
Msa0136940 AT1G15180.2 63.929 280 101 0 128 407 1 280 5.75e-127 376
Msa0136940 AT1G66760.4 48.387 403 197 3 5 407 2 393 4.48e-126 373
Msa0136940 AT2G34360.2 41.485 458 215 2 25 482 15 419 1.36e-120 360
Msa0136940 AT1G66760.3 48.949 333 170 0 145 477 3 335 2.76e-105 318
Msa0136940 AT3G23560.1 37.687 467 288 1 14 477 8 474 2.06e-101 313
Msa0136940 AT3G23550.1 38.261 460 280 3 19 475 6 464 8.51e-99 306
Msa0136940 AT1G61890.1 36.878 442 279 0 42 483 47 488 4.61e-98 305
Msa0136940 AT3G21690.1 38.235 442 273 0 42 483 52 493 1.91e-97 303
Msa0136940 AT1G61890.2 35.991 464 290 3 18 474 16 479 5.58e-96 299
Msa0136940 AT1G11670.1 34.343 495 309 4 1 483 1 491 9.88e-95 296
Msa0136940 AT1G61890.3 35.435 460 289 4 18 470 16 474 6.85e-89 280
Msa0136940 AT3G26590.1 35.794 447 282 3 39 483 42 485 3.22e-87 277
Msa0136940 AT5G38030.1 33.676 487 314 4 3 483 2 485 6.43e-87 276
Msa0136940 AT3G59030.1 34.082 490 302 7 10 483 8 492 2.03e-85 272
Msa0136940 AT1G12950.1 36.036 444 279 3 42 483 67 507 2.22e-85 273
Msa0136940 AT1G23300.1 34.774 486 309 4 3 483 2 484 2.52e-85 272
Msa0136940 AT5G44050.1 34.990 483 307 5 4 483 3 481 1.06e-84 270
Msa0136940 AT1G71870.1 32.025 484 307 4 17 481 1 481 1.15e-83 268
Msa0136940 AT4G29140.1 33.958 480 313 4 3 480 17 494 1.69e-81 263
Msa0136940 AT4G21910.2 35.347 447 278 4 42 483 57 497 2.88e-81 261
Msa0136940 AT4G21910.4 35.347 447 278 4 42 483 57 497 2.88e-81 261
Msa0136940 AT4G21903.1 35.593 413 263 2 72 483 83 493 6.19e-81 260
Msa0136940 AT4G21910.3 35.123 447 279 4 42 483 55 495 9.70e-81 260
Msa0136940 AT4G21910.1 35.123 447 279 4 42 483 55 495 9.70e-81 260
Msa0136940 AT1G47530.1 34.884 473 295 8 17 483 10 475 9.89e-80 257
Msa0136940 AT1G58340.1 32.510 486 309 6 9 481 18 497 1.62e-79 258
Msa0136940 AT3G23560.2 36.524 397 249 1 14 407 8 404 7.45e-79 252
Msa0136940 AT4G21903.2 34.845 419 266 3 72 485 83 499 3.67e-78 254
Msa0136940 AT4G21903.3 35.677 384 247 0 100 483 1 384 1.63e-77 248
Msa0136940 AT5G65380.1 33.824 476 310 3 9 483 7 478 9.98e-77 249
Msa0136940 AT3G26590.2 36.458 384 243 1 100 483 1 383 6.47e-76 244
Msa0136940 AT4G23030.1 33.547 468 300 5 20 481 10 472 2.04e-75 246
Msa0136940 AT5G19700.1 30.480 479 328 1 3 481 2 475 1.94e-74 244
Msa0136940 AT5G52050.1 31.084 489 318 5 1 480 1 479 5.09e-74 243
Msa0136940 AT2G38510.1 31.757 444 298 5 41 481 5 446 1.72e-73 241
Msa0136940 AT5G10420.1 34.120 466 299 4 20 483 20 479 4.70e-73 239
Msa0136940 AT1G33090.1 34.454 476 301 5 1 474 1 467 6.87e-73 239
Msa0136940 AT1G33110.1 32.981 473 311 4 13 483 8 476 1.22e-71 236
Msa0136940 AT1G33100.1 34.120 466 294 6 13 474 8 464 6.32e-71 234
Msa0136940 AT1G33080.1 32.784 485 315 5 1 483 1 476 4.84e-70 232
Msa0136940 AT4G00350.1 34.009 444 287 3 42 483 88 527 7.72e-70 233
Msa0136940 AT1G33080.2 32.573 482 314 5 1 480 1 473 1.10e-69 231
Msa0136940 AT1G47530.2 37.179 390 232 8 100 483 1 383 8.76e-69 225
Msa0136940 AT5G49130.1 32.166 457 292 7 41 481 25 479 2.72e-68 227
Msa0136940 AT3G59030.2 33.575 414 254 7 10 407 8 416 6.51e-66 219
Msa0136940 AT4G25640.1 33.190 464 307 2 20 483 13 473 2.11e-64 217
Msa0136940 AT4G25640.2 33.190 464 307 2 20 483 13 473 4.24e-64 216
Msa0136940 AT4G25640.3 33.412 425 280 2 20 444 13 434 1.07e-60 206
Msa0136940 AT4G22790.1 29.915 468 314 4 25 480 5 470 9.49e-57 196
Msa0136940 AT1G33110.2 31.156 398 268 4 13 408 8 401 5.97e-50 176
Msa0136940 AT3G03620.2 28.051 467 329 4 18 483 17 477 8.48e-50 178
Msa0136940 AT3G03620.1 28.051 467 329 4 18 483 17 477 8.48e-50 178
Msa0136940 AT5G17700.2 28.512 477 330 5 8 483 8 474 3.32e-49 176
Msa0136940 AT5G17700.1 28.512 477 330 5 8 483 8 474 3.32e-49 176
Msa0136940 AT2G04066.1 51.181 127 62 0 361 487 41 167 1.33e-38 139
Msa0136940 AT5G17700.3 27.681 401 279 5 8 407 8 398 5.27e-34 132

Find 110 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATAACATGTTGTATAAAT+TGG 0.106809 1_3:+69181708 Msa0136940:CDS
TGGAACTATTTCAAGGAATT+TGG 0.108281 1_3:+69180316 Msa0136940:CDS
AATTGTCGCCGTAACAAATT+TGG 0.138232 1_3:-69182387 None:intergenic
TTGCTGCTGCATTGGCATTT+TGG 0.153192 1_3:+69181612 Msa0136940:CDS
TTTGCATGCCGCCATGTTTA+TGG 0.161252 1_3:+69181238 Msa0136940:CDS
GCCTTAGCCATTTCCTTTAC+TGG 0.165328 1_3:+69176624 Msa0136940:CDS
GCGACAATTCCCCACTTTAT+TGG 0.177279 1_3:+69182401 Msa0136940:three_prime_UTR
TTTACTAATGCAGGCAATTA+AGG 0.237076 1_3:+69182296 Msa0136940:intron
AAGCAGGAAGATTCACAATT+TGG 0.240770 1_3:+69180025 Msa0136940:CDS
ACAAGGGTTTCAAATGAATT+AGG 0.244096 1_3:+69181127 Msa0136940:CDS
TGAAATAGTTCCATAGAAAT+TGG 0.245398 1_3:-69180306 None:intergenic
CTTCTTCTTATTCTTTGAAA+TGG 0.272579 1_3:+69176359 Msa0136940:exon
GAAGTTTCAAGTTGTGGATT+AGG 0.295229 1_3:-69180833 None:intergenic
GGAACTATTTCAAGGAATTT+GGG 0.312614 1_3:+69180317 Msa0136940:CDS
AAGACAGGATTGAGTAATAT+TGG 0.317710 1_3:+69180189 Msa0136940:CDS
AACTAGAGCGCCAATTTCTA+TGG 0.323580 1_3:+69180296 Msa0136940:CDS
TGTCACCGGTTTCAGCTTCC+TGG 0.324030 1_3:+69176647 Msa0136940:CDS
AAGAGGATTTGTTACCTATC+AGG 0.328940 1_3:+69176507 Msa0136940:CDS
GAAAGAATAGAGAAATTAGT+TGG 0.332532 1_3:+69176463 Msa0136940:CDS
TCAGGGGTTGCTAGAGGTTG+TGG 0.334964 1_3:+69181530 Msa0136940:intron
CCTGCTTCATGTGCAATTAG+AGG 0.339106 1_3:-69180009 None:intergenic
TATACCTCTTTGCTGGGCTT+TGG 0.339839 1_3:+69180161 Msa0136940:CDS
TACCTTCTGCTGTGATGGTT+TGG 0.347556 1_3:+69180358 Msa0136940:CDS
GTATCCATATACCTCTTTGC+TGG 0.350676 1_3:+69180154 Msa0136940:CDS
ACAACATGTGGACAGGCTTA+TGG 0.351982 1_3:+69179859 Msa0136940:CDS
TTCTTCTTATTCTTTGAAAT+GGG 0.354208 1_3:+69176360 Msa0136940:exon
ATTAATAATCTCCAATAAAG+TGG 0.354532 1_3:-69182412 None:intergenic
AAACTTCAGTTCTATCAGTT+TGG 0.355601 1_3:+69180849 Msa0136940:CDS
CGCTATACCTTCTGCTGTGA+TGG 0.376002 1_3:+69180353 Msa0136940:CDS
AAGCCCAGCAAAGAGGTATA+TGG 0.387347 1_3:-69180158 None:intergenic
TATACAATACCATTTGGAAT+TGG 0.396274 1_3:+69180989 Msa0136940:CDS
CAGGGGTTGCTAGAGGTTGT+GGG 0.399326 1_3:+69181531 Msa0136940:intron
GATTCCTGTTGCTGCTGCAT+TGG 0.404386 1_3:+69181604 Msa0136940:CDS
GAGCTAATTGTCTTGCTCTC+TGG 0.405045 1_3:+69180803 Msa0136940:CDS
ATTGTCGCCGTAACAAATTT+GGG 0.406688 1_3:-69182386 None:intergenic
CGTCACTGTCTTGGCTCCTC+TGG 0.408539 1_3:+69181297 Msa0136940:CDS
CATAACATGTTGTATAAATT+GGG 0.412639 1_3:+69181709 Msa0136940:CDS
AAAAGAATACGGATTGAGAT+TGG 0.414241 1_3:-69176329 None:intergenic
TTGTATAAATTGGGAGCAAC+TGG 0.416206 1_3:+69181718 Msa0136940:CDS
TGGGTTCAAGTGGGAGGAAA+AGG 0.421749 1_3:+69181632 Msa0136940:CDS
TTGCAATGAGCATTTCCATT+TGG 0.422457 1_3:+69180220 Msa0136940:CDS
ATTTCTATGGAACTATTTCA+AGG 0.422594 1_3:+69180309 Msa0136940:CDS
TATCCATATACCTCTTTGCT+GGG 0.424522 1_3:+69180155 Msa0136940:CDS
GCTAAACAATATCAAAGAAT+AGG 0.430267 1_3:+69179883 Msa0136940:CDS
ACTCTCTATACAATACCATT+TGG 0.442113 1_3:+69180983 Msa0136940:CDS
AAAGAATAGAGAAATTAGTT+GGG 0.445277 1_3:+69176464 Msa0136940:CDS
ATAGGAGTTTATGTGAATCT+AGG 0.460939 1_3:+69181563 Msa0136940:CDS
AGGAATCCCACATAGGTAGA+AGG 0.467641 1_3:-69181588 None:intergenic
TTGTTACCTATCAGGTCCTA+TGG 0.468502 1_3:+69176515 Msa0136940:CDS
ACGGCAACACGTGCTTCAAA+TGG 0.468974 1_3:-69181160 None:intergenic
AAGTGGGAGGAAAAGGACTT+TGG 0.475738 1_3:+69181639 Msa0136940:CDS
CTGCTTCATGTGCAATTAGA+GGG 0.480437 1_3:-69180008 None:intergenic
AGAACTGAAGTTTCAAGTTG+TGG 0.486860 1_3:-69180839 None:intergenic
AGCATACAAGGCGTTCTCGC+AGG 0.492812 1_3:+69181343 Msa0136940:CDS
AATGCCAATGCAGCAGCAAC+AGG 0.494774 1_3:-69181608 None:intergenic
GGGTGAAGAGAGAAGAGTGA+TGG 0.495934 1_3:+69176380 Msa0136940:CDS
TTAATAATCTCCAATAAAGT+GGG 0.496362 1_3:-69182411 None:intergenic
ACACAAGAGCTTAAAAGCAT+TGG 0.497017 1_3:-69180123 None:intergenic
GGTCAAGCCCAAATTTGTTA+CGG 0.497827 1_3:+69182379 Msa0136940:three_prime_UTR
TGTTAAATACGTCACTGTCT+TGG 0.503008 1_3:+69181288 Msa0136940:CDS
TGGGCTTTGGTATTCAAGAC+AGG 0.506637 1_3:+69180174 Msa0136940:CDS
CCTCTAATTGCACATGAAGC+AGG 0.510834 1_3:+69180009 Msa0136940:CDS
ATCATGATTGTTGGTCACTT+AGG 0.513601 1_3:+69176579 Msa0136940:CDS
TTTACACGAAAGAATTGAAG+AGG 0.519436 1_3:+69176490 Msa0136940:CDS
GCTTACCAGGAAGCTGAAAC+CGG 0.522233 1_3:-69176652 None:intergenic
CAGCTACCATAGGACCTGAT+AGG 0.522912 1_3:-69176521 None:intergenic
GGTGACACCAGTAAAGGAAA+TGG 0.523197 1_3:-69176631 None:intergenic
GGAGGAAAAGGACTTTGGAT+TGG 0.526302 1_3:+69181644 Msa0136940:CDS
ATTTCCTTTACTGGTGTCAC+CGG 0.526363 1_3:+69176633 Msa0136940:CDS
GTTTCAAATGAATTAGGAGC+TGG 0.528676 1_3:+69181133 Msa0136940:CDS
GTTGTGTCCATCATGATTGT+TGG 0.531106 1_3:+69176570 Msa0136940:CDS
GTTATACTCGACAGCATACA+AGG 0.534553 1_3:+69181331 Msa0136940:CDS
ATTTATTCAGGGGTTGCTAG+AGG 0.545977 1_3:+69181524 Msa0136940:intron
ATAGATTGGTATGATAAGAA+AGG 0.558730 1_3:+69182358 Msa0136940:exon
ATTTGAAAATATCTAACTAG+TGG 0.558930 1_3:-69180084 None:intergenic
ACCAGTAAAGGAAATGGCTA+AGG 0.566283 1_3:-69176625 None:intergenic
CTAGGAGCCTTCTACCTATG+TGG 0.568455 1_3:+69181581 Msa0136940:CDS
AACATGGCGGCATGCAAAGA+GGG 0.570292 1_3:-69181233 None:intergenic
GCTGCAGCACCAATTCCAAA+TGG 0.574096 1_3:-69180998 None:intergenic
TACCAAACCATCACAGCAGA+AGG 0.580285 1_3:-69180360 None:intergenic
TAGGAGCCTTCTACCTATGT+GGG 0.586277 1_3:+69181582 Msa0136940:CDS
CTTTGGATTGGTATACAAGT+CGG 0.590240 1_3:+69181656 Msa0136940:CDS
ACTAGAAACAACATGTGGAC+AGG 0.594187 1_3:+69179852 Msa0136940:CDS
TTGATGATTGTAGCCTTGAG+TGG 0.594414 1_3:+69180771 Msa0136940:intron
TAAGTGACCAACAATCATGA+TGG 0.595343 1_3:-69176577 None:intergenic
CTCTGAATATTATAGTACAA+GGG 0.600517 1_3:+69181111 Msa0136940:intron
GGTTGTGGGTGGCAACACAT+AGG 0.610292 1_3:+69181545 Msa0136940:CDS
TAACAGATGGGAATGGCTAG+TGG 0.610311 1_3:+69179829 Msa0136940:intron
GCTCATATGACCACCACTCA+AGG 0.611921 1_3:-69180784 None:intergenic
GAAACCGGTGACACCAGTAA+AGG 0.616842 1_3:-69176637 None:intergenic
TTGGAATTGGTGCTGCAGCA+AGG 0.618649 1_3:+69181002 Msa0136940:CDS
AAACATGGCGGCATGCAAAG+AGG 0.622373 1_3:-69181234 None:intergenic
TTGATCCAAATAAAAGAGAG+TGG 0.624093 1_3:-69179952 None:intergenic
GGGTTGCTAGAGGTTGTGGG+TGG 0.624099 1_3:+69181534 Msa0136940:CDS
AAGTGACATAGCAGCTAACA+CGG 0.624301 1_3:-69181179 None:intergenic
ATGATTGTAGCCTTGAGTGG+TGG 0.624582 1_3:+69180774 Msa0136940:intron
AATACCAAAGCCCAGCAAAG+AGG 0.626723 1_3:-69180165 None:intergenic
ACAGGATTGAGTAATATTGG+TGG 0.628730 1_3:+69180192 Msa0136940:CDS
GAAGATGTTACAGCTACCAT+AGG 0.629703 1_3:-69176531 None:intergenic
AGTAAAGGAAATGGCTAAGG+CGG 0.639044 1_3:-69176622 None:intergenic
CAGCAACAGGAATCCCACAT+AGG 0.643167 1_3:-69181595 None:intergenic
TATTGTATAGAGAGTTGCAA+TGG 0.643527 1_3:-69180975 None:intergenic
AGATATATAAAATATAGAGT+CGG 0.646191 1_3:-69176300 None:intergenic
TGAAAATGTAGCCATAAACA+TGG 0.657665 1_3:-69181249 None:intergenic
TAATAATCTCCAATAAAGTG+GGG 0.657894 1_3:-69182410 None:intergenic
ATAACAGATATAGAAACCAG+AGG 0.672251 1_3:-69181313 None:intergenic
CTCATGCTAACAGATGGGAA+TGG 0.678937 1_3:+69179822 Msa0136940:intron
AGTGGACTAGAAACAACATG+TGG 0.725232 1_3:+69179847 Msa0136940:CDS
AAATGTAGCCATAAACATGG+CGG 0.738991 1_3:-69181246 None:intergenic
AGGCAATTAAGGCTAGACAG+AGG 0.770785 1_3:+69182307 Msa0136940:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAATTAGACAAATA+CGG + chr1_3:69176947-69176966 Msa0136940:intron 10.0%
!! TATAATATACACAAATAAAA+TGG + chr1_3:69177888-69177907 Msa0136940:intron 10.0%
!!! TATAATATTTTGAATTTTTC+TGG - chr1_3:69178477-69178496 None:intergenic 10.0%
!! AAAAAATTGACATATTTATA+GGG + chr1_3:69178765-69178784 Msa0136940:intron 10.0%
!! AATATATCATTCAAATTTAA+TGG - chr1_3:69180739-69180758 None:intergenic 10.0%
!! AGATATATAAAATATAGAGT+CGG - chr1_3:69176303-69176322 None:intergenic 15.0%
!! ATTATAAATTAGACAAATAC+GGG + chr1_3:69176948-69176967 Msa0136940:intron 15.0%
!!! TTTTAATGGTCAAATAATAA+TGG - chr1_3:69177604-69177623 None:intergenic 15.0%
!!! AAGTTAGATATTTTATAAGT+AGG + chr1_3:69177687-69177706 Msa0136940:intron 15.0%
!!! TGATTGTTTTATGTTTAATA+TGG + chr1_3:69177767-69177786 Msa0136940:intron 15.0%
!!! GATTGTTTTATGTTTAATAT+GGG + chr1_3:69177768-69177787 Msa0136940:intron 15.0%
!! TATTTGTGTATATTATACAA+AGG - chr1_3:69177885-69177904 None:intergenic 15.0%
!! GAAAAATTGACATATTTATA+GGG - chr1_3:69178196-69178215 None:intergenic 15.0%
!! TAGCTTCTTAAAAAAAAATA+GGG - chr1_3:69178256-69178275 None:intergenic 15.0%
!! TTAGCTTCTTAAAAAAAAAT+AGG - chr1_3:69178257-69178276 None:intergenic 15.0%
!!! TGAAGATTGAAAATTTTATA+GGG - chr1_3:69178393-69178412 None:intergenic 15.0%
!!! ATGAAGATTGAAAATTTTAT+AGG - chr1_3:69178394-69178413 None:intergenic 15.0%
!!! AAATTTTCAATCTTCATTTT+TGG + chr1_3:69178397-69178416 Msa0136940:intron 15.0%
!! CAAAAAATTGACATATTTAT+AGG + chr1_3:69178764-69178783 Msa0136940:intron 15.0%
!!! TTTTTAGTCAAAAGAAATAA+GGG - chr1_3:69178808-69178827 None:intergenic 15.0%
!!! ATTTTTAGTCAAAAGAAATA+AGG - chr1_3:69178809-69178828 None:intergenic 15.0%
!!! TACTTAATTTTTAGGAAAAT+GGG - chr1_3:69178966-69178985 None:intergenic 15.0%
!!! AACATTAACCTATTTTTTTT+TGG + chr1_3:69179172-69179191 Msa0136940:intron 15.0%
!!! TTTTTTTGCCAAAAAAAAAT+AGG - chr1_3:69179183-69179202 None:intergenic 15.0%
!!! TTACTATTTCGTAAATTTTA+GGG - chr1_3:69181938-69181957 None:intergenic 15.0%
!!! TTTACTATTTCGTAAATTTT+AGG - chr1_3:69181939-69181958 None:intergenic 15.0%
!! ATTAATAAATAATGCCAAAA+AGG - chr1_3:69182262-69182281 None:intergenic 15.0%
!!! TTATTTTAATTAGACAGATA+GGG + chr1_3:69182450-69182469 Msa0136940:three_prime_UTR 15.0%
!!! TTCTTCTTATTCTTTGAAAT+GGG + chr1_3:69176360-69176379 Msa0136940:exon 20.0%
!! AAAGAATAGAGAAATTAGTT+GGG + chr1_3:69176464-69176483 Msa0136940:CDS 20.0%
!! TTAAACAAAAGACTATGAAT+AGG - chr1_3:69177047-69177066 None:intergenic 20.0%
!!! TCATTAAAGTTGTTTGATTT+TGG - chr1_3:69177362-69177381 None:intergenic 20.0%
!! AATAAGAAGAGAGAAAAAAA+AGG - chr1_3:69177388-69177407 None:intergenic 20.0%
!!! TTTTTTTTCTCTCTTCTTAT+TGG + chr1_3:69177387-69177406 Msa0136940:intron 20.0%
!!! AATTAAAAGTTTTGAGTAAC+CGG + chr1_3:69177537-69177556 Msa0136940:intron 20.0%
!!! AAAGAAATAGTGAAGTTTTA+AGG - chr1_3:69177831-69177850 None:intergenic 20.0%
!!! TAAAACTTCACTATTTCTTT+TGG + chr1_3:69177831-69177850 Msa0136940:intron 20.0%
!! GTCTTCTATTATATACAAAT+TGG - chr1_3:69178013-69178032 None:intergenic 20.0%
!! CGAAAAATTGACATATTTAT+AGG - chr1_3:69178197-69178216 None:intergenic 20.0%
!!! TATGAGTTTACTTTAAAAGA+GGG - chr1_3:69178424-69178443 None:intergenic 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG - chr1_3:69178425-69178444 None:intergenic 20.0%
!!! ATAAGGGTTAAATATGTTTT+TGG - chr1_3:69178792-69178811 None:intergenic 20.0%
!!! ACTTAATTTTTAGGAAAATG+GGG - chr1_3:69178965-69178984 None:intergenic 20.0%
!!! GTACTTAATTTTTAGGAAAA+TGG - chr1_3:69178967-69178986 None:intergenic 20.0%
!! ATAGAAATACACATATCAAA+AGG - chr1_3:69179115-69179134 None:intergenic 20.0%
!! AAATTTGCATAATAATCATG+AGG - chr1_3:69179206-69179225 None:intergenic 20.0%
!!! TATCAAAGTCATATTTTGTA+GGG + chr1_3:69179591-69179610 Msa0136940:intron 20.0%
!! GTTGTATTTAAATATCACAT+TGG + chr1_3:69179671-69179690 Msa0136940:intron 20.0%
!!! ATCTATATTTTCTCTCATAT+TGG + chr1_3:69179921-69179940 Msa0136940:CDS 20.0%
!! ATTTGAAAATATCTAACTAG+TGG - chr1_3:69180087-69180106 None:intergenic 20.0%
!! AAAAATCACATTTAACCAAA+TGG - chr1_3:69180238-69180257 None:intergenic 20.0%
!!! AGATCTTTCATTAGTTTTAA+TGG - chr1_3:69180526-69180545 None:intergenic 20.0%
!!! TTGCAATTTTTTAAATTCGA+TGG + chr1_3:69180589-69180608 Msa0136940:intron 20.0%
!! AAAGATAATCTGTTAGAATT+AGG + chr1_3:69181423-69181442 Msa0136940:intron 20.0%
!! AAGATAATCTGTTAGAATTA+GGG + chr1_3:69181424-69181443 Msa0136940:intron 20.0%
!! TGTTTACTGTTTATTTATTC+AGG + chr1_3:69181512-69181531 Msa0136940:intron 20.0%
!! GTTTACTGTTTATTTATTCA+GGG + chr1_3:69181513-69181532 Msa0136940:intron 20.0%
!! TTTACTGTTTATTTATTCAG+GGG + chr1_3:69181514-69181533 Msa0136940:intron 20.0%
!! TCATAACATGTTGTATAAAT+TGG + chr1_3:69181708-69181727 Msa0136940:CDS 20.0%
!! CATAACATGTTGTATAAATT+GGG + chr1_3:69181709-69181728 Msa0136940:CDS 20.0%
!!! CACAATAAATTTGAAATTTG+AGG - chr1_3:69181770-69181789 None:intergenic 20.0%
!! TATATAACTTATAGCCAATT+TGG + chr1_3:69181817-69181836 Msa0136940:intron 20.0%
!!! AGAGAAAATTTTATCCAAAT+TGG - chr1_3:69181834-69181853 None:intergenic 20.0%
!! TCAATATATAAGTCTTTCTA+TGG - chr1_3:69182030-69182049 None:intergenic 20.0%
!! TAAATTTGAAGGAAAAAAAG+AGG + chr1_3:69182107-69182126 Msa0136940:intron 20.0%
!! ATTTATTAATCTCAATTGTG+TGG + chr1_3:69182272-69182291 Msa0136940:intron 20.0%
!! TTAATAATCTCCAATAAAGT+GGG - chr1_3:69182414-69182433 None:intergenic 20.0%
!! ATTAATAATCTCCAATAAAG+TGG - chr1_3:69182415-69182434 None:intergenic 20.0%
!!! CTTATTTTAATTAGACAGAT+AGG + chr1_3:69182449-69182468 Msa0136940:three_prime_UTR 20.0%
! GAAGAAGAAGAAAAAGAATA+CGG - chr1_3:69176343-69176362 None:intergenic 25.0%
!! CTTCTTCTTATTCTTTGAAA+TGG + chr1_3:69176359-69176378 Msa0136940:exon 25.0%
! GAAAGAATAGAGAAATTAGT+TGG + chr1_3:69176463-69176482 Msa0136940:CDS 25.0%
!! ATCTTCACAATATCTTTTAC+AGG + chr1_3:69176548-69176567 Msa0136940:CDS 25.0%
!! AATCTAGTAATTTTTGTCCT+CGG - chr1_3:69176711-69176730 None:intergenic 25.0%
! AGGACAAAAATTACTAGATT+TGG + chr1_3:69176711-69176730 Msa0136940:intron 25.0%
! TAGTTGATTATACTCCTATT+TGG + chr1_3:69176843-69176862 Msa0136940:intron 25.0%
!! AATACGGGTACATTTTTATA+AGG + chr1_3:69176963-69176982 Msa0136940:intron 25.0%
! CTTCTTTAGTCAAAATAACT+TGG - chr1_3:69176996-69177015 None:intergenic 25.0%
! AGCAAATGAAAATTGTGAAT+TGG + chr1_3:69177014-69177033 Msa0136940:intron 25.0%
! ATAACAATAGAGAGAGAAAA+AGG + chr1_3:69177413-69177432 Msa0136940:intron 25.0%
! TCACAAAAGTTGTTTAAAAG+TGG + chr1_3:69177481-69177500 Msa0136940:intron 25.0%
! TAATGGTCAAATAATAATGG+CGG - chr1_3:69177601-69177620 None:intergenic 25.0%
! GACCATTAAAAAATGAAGTT+AGG + chr1_3:69177613-69177632 Msa0136940:intron 25.0%
!!! AGCCTAACTTCATTTTTTAA+TGG - chr1_3:69177618-69177637 None:intergenic 25.0%
! TAAAAAATGAAGTTAGGCTT+AGG + chr1_3:69177619-69177638 Msa0136940:intron 25.0%
!! TAGCATCTTGATCAATTTTA+TGG - chr1_3:69178052-69178071 None:intergenic 25.0%
! AAGAAAAAAATACACCTAGA+AGG - chr1_3:69178130-69178149 None:intergenic 25.0%
! AGTTGAAGGAAAATATTAGA+GGG - chr1_3:69178227-69178246 None:intergenic 25.0%
! AAGTTGAAGGAAAATATTAG+AGG - chr1_3:69178228-69178247 None:intergenic 25.0%
!! AAATTTTCAATCACTACGTT+TGG - chr1_3:69178701-69178720 None:intergenic 25.0%
! TAGTCATCAATTGATTATTG+TGG + chr1_3:69178847-69178866 Msa0136940:intron 25.0%
! AGTCATCAATTGATTATTGT+GGG + chr1_3:69178848-69178867 Msa0136940:intron 25.0%
!!! TGTTTTATTATGTCAAGATG+TGG + chr1_3:69178890-69178909 Msa0136940:intron 25.0%
!! AGGTTCAGTACTTAATTTTT+AGG - chr1_3:69178974-69178993 None:intergenic 25.0%
!!! TGAACCTTCATGATATTTTT+TGG + chr1_3:69178987-69179006 Msa0136940:intron 25.0%
! ATGACCAAAAAATATCATGA+AGG - chr1_3:69178994-69179013 None:intergenic 25.0%
!!! TTTTCATAAAGTCTTGTCTT+TGG + chr1_3:69179325-69179344 Msa0136940:intron 25.0%
!!! GTCTTATAAACTAGTTTGTT+TGG + chr1_3:69179541-69179560 Msa0136940:intron 25.0%
!! GTATCAAAGTCATATTTTGT+AGG + chr1_3:69179590-69179609 Msa0136940:intron 25.0%
! ATATATACATTGCACAACTT+GGG - chr1_3:69179704-69179723 None:intergenic 25.0%
! AATATATACATTGCACAACT+TGG - chr1_3:69179705-69179724 None:intergenic 25.0%
! AAGTTGTGCAATGTATATAT+TGG + chr1_3:69179704-69179723 Msa0136940:intron 25.0%
! GCTAAACAATATCAAAGAAT+AGG + chr1_3:69179883-69179902 Msa0136940:CDS 25.0%
!! TGGTTAAATGTGATTTTTCT+TGG + chr1_3:69180240-69180259 Msa0136940:CDS 25.0%
! TGAAATAGTTCCATAGAAAT+TGG - chr1_3:69180309-69180328 None:intergenic 25.0%
! ATTTCTATGGAACTATTTCA+AGG + chr1_3:69180309-69180328 Msa0136940:CDS 25.0%
! ATATACAAGTTTAGTTGAAG+AGG - chr1_3:69180395-69180414 None:intergenic 25.0%
! CTATCAAAAGATCTATTTAG+CGG + chr1_3:69180496-69180515 Msa0136940:intron 25.0%
!! ATATTCTTTTACTGCATCAA+TGG + chr1_3:69180560-69180579 Msa0136940:intron 25.0%
!! TATACAATACCATTTGGAAT+TGG + chr1_3:69180989-69181008 Msa0136940:CDS 25.0%
! TCTCTGAATATTATAGTACA+AGG + chr1_3:69181110-69181129 Msa0136940:intron 25.0%
! CTCTGAATATTATAGTACAA+GGG + chr1_3:69181111-69181130 Msa0136940:intron 25.0%
! AGATAATCTGTTAGAATTAG+GGG + chr1_3:69181425-69181444 Msa0136940:intron 25.0%
!! AATTTGAGGTTTCAAGATAA+AGG - chr1_3:69181756-69181775 None:intergenic 25.0%
!! TGCTTTGATTGACAATTTTA+AGG + chr1_3:69181788-69181807 Msa0136940:intron 25.0%
! TAAGGAAATATTTCGTTTCA+AGG - chr1_3:69181999-69182018 None:intergenic 25.0%
!! CAATATAACATTTAAAACCG+CGG + chr1_3:69182081-69182100 Msa0136940:intron 25.0%
! AAATTTATTCGATGATCATG+TGG + chr1_3:69182230-69182249 Msa0136940:intron 25.0%
!! TTGTTTGATGTTCAATTTTC+TGG + chr1_3:69182330-69182349 Msa0136940:CDS 25.0%
! ATAGATTGGTATGATAAGAA+AGG + chr1_3:69182358-69182377 Msa0136940:exon 25.0%
! TAATAATCTCCAATAAAGTG+GGG - chr1_3:69182413-69182432 None:intergenic 25.0%
! AAAAGAATACGGATTGAGAT+TGG - chr1_3:69176332-69176351 None:intergenic 30.0%
TTTACACGAAAGAATTGAAG+AGG + chr1_3:69176490-69176509 Msa0136940:CDS 30.0%
AGAAAAATAGGCAACCAAAT+AGG - chr1_3:69176860-69176879 None:intergenic 30.0%
CAAGATAGTAGCAGAAAAAT+AGG - chr1_3:69176872-69176891 None:intergenic 30.0%
TATTGTATTTGTCCTTACGT+GGG + chr1_3:69177077-69177096 Msa0136940:intron 30.0%
AAGACTATAACTCATGAAGA+GGG + chr1_3:69177562-69177581 Msa0136940:intron 30.0%
AAATAGGGACTAAAAGTTGA+AGG - chr1_3:69178241-69178260 None:intergenic 30.0%
TTATAGTGACTAAAAGCTGA+AGG + chr1_3:69178720-69178739 Msa0136940:intron 30.0%
! AGCTGAAGGAAAATTTTAGA+AGG + chr1_3:69178734-69178753 Msa0136940:intron 30.0%
AATGCAACATTGCTCTATTT+AGG - chr1_3:69179051-69179070 None:intergenic 30.0%
TAAATAGAGCAATGTTGCAT+TGG + chr1_3:69179050-69179069 Msa0136940:intron 30.0%
TTAAATTGGATACATGTTCC+TGG - chr1_3:69179246-69179265 None:intergenic 30.0%
TAATAGTACACACAAGGTAT+TGG - chr1_3:69179390-69179409 None:intergenic 30.0%
ATGCTTTAATAGTACACACA+AGG - chr1_3:69179396-69179415 None:intergenic 30.0%
! TGATGATGAAGATAACTTAG+TGG - chr1_3:69179458-69179477 None:intergenic 30.0%
AGATCTAAGTCCATTTAACA+TGG + chr1_3:69179568-69179587 Msa0136940:intron 30.0%
GACTTTGATACCATGTTAAA+TGG - chr1_3:69179581-69179600 None:intergenic 30.0%
TGAGAATCAGATTTAGACTT+AGG + chr1_3:69179618-69179637 Msa0136940:intron 30.0%
ATCAATGCATTGAGTAACTT+GGG - chr1_3:69179795-69179814 None:intergenic 30.0%
! GTTTACCACTCTCTTTTATT+TGG + chr1_3:69179947-69179966 Msa0136940:CDS 30.0%
TTGATCCAAATAAAAGAGAG+TGG - chr1_3:69179955-69179974 None:intergenic 30.0%
AAGACAGGATTGAGTAATAT+TGG + chr1_3:69180189-69180208 Msa0136940:CDS 30.0%
TGGAACTATTTCAAGGAATT+TGG + chr1_3:69180316-69180335 Msa0136940:CDS 30.0%
GGAACTATTTCAAGGAATTT+GGG + chr1_3:69180317-69180336 Msa0136940:CDS 30.0%
TTTCTGTTCTCGAAATTAGA+AGG + chr1_3:69180439-69180458 Msa0136940:intron 30.0%
TTCTGTTCTCGAAATTAGAA+GGG + chr1_3:69180440-69180459 Msa0136940:intron 30.0%
TTTAGTGCTTGAAATCGTAA+GGG - chr1_3:69180658-69180677 None:intergenic 30.0%
! TTTTAGTGCTTGAAATCGTA+AGG - chr1_3:69180659-69180678 None:intergenic 30.0%
AAACTTCAGTTCTATCAGTT+TGG + chr1_3:69180849-69180868 Msa0136940:CDS 30.0%
TATTGTATAGAGAGTTGCAA+TGG - chr1_3:69180978-69180997 None:intergenic 30.0%
ACTCTCTATACAATACCATT+TGG + chr1_3:69180983-69181002 Msa0136940:CDS 30.0%
ACAAGGGTTTCAAATGAATT+AGG + chr1_3:69181127-69181146 Msa0136940:CDS 30.0%
TGAAAATGTAGCCATAAACA+TGG - chr1_3:69181252-69181271 None:intergenic 30.0%
! CTACATTTTCAGTAGTGATA+CGG + chr1_3:69181261-69181280 Msa0136940:CDS 30.0%
ATAACAGATATAGAAACCAG+AGG - chr1_3:69181316-69181335 None:intergenic 30.0%
ATAGGAGTTTATGTGAATCT+AGG + chr1_3:69181563-69181582 Msa0136940:CDS 30.0%
TATGGAGTAAATCAGCATTT+CGG + chr1_3:69181880-69181899 Msa0136940:intron 30.0%
CTTTCTATGGATGTTAACTA+AGG - chr1_3:69182017-69182036 None:intergenic 30.0%
TTTACTAATGCAGGCAATTA+AGG + chr1_3:69182296-69182315 Msa0136940:intron 30.0%
!! ATTTTCTGGAGACAATAGAT+TGG + chr1_3:69182344-69182363 Msa0136940:CDS 30.0%
!! AAGAGGATTTGTTACCTATC+AGG + chr1_3:69176507-69176526 Msa0136940:CDS 35.0%
TAAGTGACCAACAATCATGA+TGG - chr1_3:69176580-69176599 None:intergenic 35.0%
ATCATGATTGTTGGTCACTT+AGG + chr1_3:69176579-69176598 Msa0136940:CDS 35.0%
! TAGTAATTTTTGTCCTCGGA+CGG - chr1_3:69176707-69176726 None:intergenic 35.0%
GTATTGTATTTGTCCTTACG+TGG + chr1_3:69177076-69177095 Msa0136940:intron 35.0%
ATTGTATTTGTCCTTACGTG+GGG + chr1_3:69177078-69177097 Msa0136940:intron 35.0%
CTTGTGTGACATTAATGTCA+CGG + chr1_3:69177106-69177125 Msa0136940:intron 35.0%
AAAAAAGGACTCTCACGTAA+GGG - chr1_3:69177257-69177276 None:intergenic 35.0%
AAAAAAAGGACTCTCACGTA+AGG - chr1_3:69177258-69177277 None:intergenic 35.0%
ATCACTGTGAAGTTAAACGA+AGG - chr1_3:69177289-69177308 None:intergenic 35.0%
!!! TGCGCTGTGTTTTTTATTTG+AGG + chr1_3:69177320-69177339 Msa0136940:intron 35.0%
TCATGAGTTATAGTCTTCAC+CGG - chr1_3:69177559-69177578 None:intergenic 35.0%
GAAGACTATAACTCATGAAG+AGG + chr1_3:69177561-69177580 Msa0136940:intron 35.0%
AAGAGTTGTGTAAACTAGTG+AGG + chr1_3:69177642-69177661 Msa0136940:intron 35.0%
!!! AGTTTTAAGGTAGACCATGT+TGG - chr1_3:69177818-69177837 None:intergenic 35.0%
AACGTTAGATACTCCTATTG+CGG + chr1_3:69178089-69178108 Msa0136940:intron 35.0%
ATTCTCACTGCTGTCAATTT+AGG - chr1_3:69178289-69178308 None:intergenic 35.0%
!!! GAACTCACCACAACTTTTTT+GGG - chr1_3:69178930-69178949 None:intergenic 35.0%
!!! TGAACTCACCACAACTTTTT+TGG - chr1_3:69178931-69178950 None:intergenic 35.0%
TATCTTAACATGTGCCTTGA+GGG + chr1_3:69179141-69179160 Msa0136940:intron 35.0%
! TGAGGGTACGATTGTTAAAT+TGG - chr1_3:69179260-69179279 None:intergenic 35.0%
! GAGCGTTTTTGTCTTTTTGA+GGG - chr1_3:69179277-69179296 None:intergenic 35.0%
!! AGAGCGTTTTTGTCTTTTTG+AGG - chr1_3:69179278-69179297 None:intergenic 35.0%
TCAAAAAGACAAAAACGCTC+TGG + chr1_3:69179277-69179296 Msa0136940:intron 35.0%
!! ACACACAAGGTATTGGAATT+TGG - chr1_3:69179383-69179402 None:intergenic 35.0%
! AGCTTGCTCAAAAATTAGCA+AGG + chr1_3:69179495-69179514 Msa0136940:intron 35.0%
CAGGCTAATTCATAAGATGA+GGG - chr1_3:69179738-69179757 None:intergenic 35.0%
ACAGGCTAATTCATAAGATG+AGG - chr1_3:69179739-69179758 None:intergenic 35.0%
TCAATGCATTGAGTAACTTG+GGG - chr1_3:69179794-69179813 None:intergenic 35.0%
CATCAATGCATTGAGTAACT+TGG - chr1_3:69179796-69179815 None:intergenic 35.0%
ATTTCACTCATGCTAACAGA+TGG + chr1_3:69179816-69179835 Msa0136940:intron 35.0%
TTTCACTCATGCTAACAGAT+GGG + chr1_3:69179817-69179836 Msa0136940:intron 35.0%
!!! GAGAACATACTAGTTTTCAC+AGG + chr1_3:69179979-69179998 Msa0136940:CDS 35.0%
AAGCAGGAAGATTCACAATT+TGG + chr1_3:69180025-69180044 Msa0136940:CDS 35.0%
! ATTGCATATGCAAAAAGTGC+TGG - chr1_3:69180057-69180076 None:intergenic 35.0%
! ACACAAGAGCTTAAAAGCAT+TGG - chr1_3:69180126-69180145 None:intergenic 35.0%
TATCCATATACCTCTTTGCT+GGG + chr1_3:69180155-69180174 Msa0136940:CDS 35.0%
ACAGGATTGAGTAATATTGG+TGG + chr1_3:69180192-69180211 Msa0136940:CDS 35.0%
TTGCAATGAGCATTTCCATT+TGG + chr1_3:69180220-69180239 Msa0136940:CDS 35.0%
!! CAGAAACGTTGATTCATTCA+TGG - chr1_3:69180425-69180444 None:intergenic 35.0%
! GCATCTTGTAGAACTCTTTT+GGG - chr1_3:69180702-69180721 None:intergenic 35.0%
! AGCATCTTGTAGAACTCTTT+TGG - chr1_3:69180703-69180722 None:intergenic 35.0%
!! GAAGTTTCAAGTTGTGGATT+AGG - chr1_3:69180836-69180855 None:intergenic 35.0%
!! AGAACTGAAGTTTCAAGTTG+TGG - chr1_3:69180842-69180861 None:intergenic 35.0%
GTTTCAAATGAATTAGGAGC+TGG + chr1_3:69181133-69181152 Msa0136940:CDS 35.0%
AAATGTAGCCATAAACATGG+CGG - chr1_3:69181249-69181268 None:intergenic 35.0%
TGTTAAATACGTCACTGTCT+TGG + chr1_3:69181288-69181307 Msa0136940:CDS 35.0%
GGTAAATTGCTCAGTATACA+AGG + chr1_3:69181364-69181383 Msa0136940:intron 35.0%
!! CTTTGGATTGGTATACAAGT+CGG + chr1_3:69181656-69181675 Msa0136940:CDS 35.0%
TTGTATAAATTGGGAGCAAC+TGG + chr1_3:69181718-69181737 Msa0136940:CDS 35.0%
! GTGCTATGTCACATTGATTA+TGG + chr1_3:69181862-69181881 Msa0136940:intron 35.0%
! TCATGTGGTAGAATCCTTTT+TGG + chr1_3:69182245-69182264 Msa0136940:intron 35.0%
!! TTGTGTGGTTTTACTAATGC+AGG + chr1_3:69182287-69182306 Msa0136940:intron 35.0%
ATTGTCGCCGTAACAAATTT+GGG - chr1_3:69182389-69182408 None:intergenic 35.0%
AATTGTCGCCGTAACAAATT+TGG - chr1_3:69182390-69182409 None:intergenic 35.0%
! GGGCATTTTTCTCATGATAA+AGG + chr1_3:69182470-69182489 Msa0136940:three_prime_UTR 35.0%
TTGTTACCTATCAGGTCCTA+TGG + chr1_3:69176515-69176534 Msa0136940:CDS 40.0%
GAAGATGTTACAGCTACCAT+AGG - chr1_3:69176534-69176553 None:intergenic 40.0%
GTTGTGTCCATCATGATTGT+TGG + chr1_3:69176570-69176589 Msa0136940:CDS 40.0%
AGTAAAGGAAATGGCTAAGG+CGG - chr1_3:69176625-69176644 None:intergenic 40.0%
ACCAGTAAAGGAAATGGCTA+AGG - chr1_3:69176628-69176647 None:intergenic 40.0%
!! ATTTCCTTTACTGGTGTCAC+CGG + chr1_3:69176633-69176652 Msa0136940:CDS 40.0%
GAGTAGTAGTATAGCTTACC+AGG - chr1_3:69176668-69176687 None:intergenic 40.0%
! AGTAATTTTTGTCCTCGGAC+GGG - chr1_3:69176706-69176725 None:intergenic 40.0%
ATGTCACGGTGACATTAATC+TGG + chr1_3:69177120-69177139 Msa0136940:intron 40.0%
GTGACATTAGATGTGTTGTG+TGG + chr1_3:69177155-69177174 Msa0136940:intron 40.0%
TTGTCATTGCCATTGCATCT+GGG - chr1_3:69177181-69177200 None:intergenic 40.0%
ATTGTCATTGCCATTGCATC+TGG - chr1_3:69177182-69177201 None:intergenic 40.0%
AAAAAGGACTCTCACGTAAG+GGG - chr1_3:69177256-69177275 None:intergenic 40.0%
!!! ACGTGAGAGTCCTTTTTTTC+CGG + chr1_3:69177259-69177278 Msa0136940:intron 40.0%
CTGTGAAGTTAAACGAAGGA+AGG - chr1_3:69177285-69177304 None:intergenic 40.0%
TAGACCATGTTGGATAACGA+GGG - chr1_3:69177808-69177827 None:intergenic 40.0%
TCACTGCTGTCAATTTAGGT+GGG - chr1_3:69178285-69178304 None:intergenic 40.0%
!!! ACAACTTTTTTGGGCGAATG+TGG - chr1_3:69178921-69178940 None:intergenic 40.0%
ACATTCGCCCAAAAAAGTTG+TGG + chr1_3:69178920-69178939 Msa0136940:intron 40.0%
!!! TGTGGTGAGTTCACTTTTTG+TGG + chr1_3:69178938-69178957 Msa0136940:intron 40.0%
!! TCATGTTAACTTGTGCCCTT+AGG + chr1_3:69179010-69179029 Msa0136940:intron 40.0%
!! CATGTTAACTTGTGCCCTTA+GGG + chr1_3:69179011-69179030 Msa0136940:intron 40.0%
TTGCTTAACATGTGCCCTAA+GGG - chr1_3:69179028-69179047 None:intergenic 40.0%
GTATCTTAACATGTGCCTTG+AGG + chr1_3:69179140-69179159 Msa0136940:intron 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG - chr1_3:69179158-69179177 None:intergenic 40.0%
! TCCTTGAAGCACTATAAACC+AGG + chr1_3:69179225-69179244 Msa0136940:intron 40.0%
TCCTGGTTTATAGTGCTTCA+AGG - chr1_3:69179229-69179248 None:intergenic 40.0%
GTCTAACATACAATCCAGAG+AGG - chr1_3:69179358-69179377 None:intergenic 40.0%
!! CACAAGGTATTGGAATTTGG+AGG - chr1_3:69179380-69179399 None:intergenic 40.0%
TACATGTATCTCACTCTCAC+AGG - chr1_3:69179757-69179776 None:intergenic 40.0%
!! AGTGGACTAGAAACAACATG+TGG + chr1_3:69179847-69179866 Msa0136940:CDS 40.0%
ACTAGAAACAACATGTGGAC+AGG + chr1_3:69179852-69179871 Msa0136940:CDS 40.0%
CTGCTTCATGTGCAATTAGA+GGG - chr1_3:69180011-69180030 None:intergenic 40.0%
GTATCCATATACCTCTTTGC+TGG + chr1_3:69180154-69180173 Msa0136940:CDS 40.0%
! TTGATGATTGTAGCCTTGAG+TGG + chr1_3:69180771-69180790 Msa0136940:intron 40.0%
AAGTGACATAGCAGCTAACA+CGG - chr1_3:69181182-69181201 None:intergenic 40.0%
GTTATACTCGACAGCATACA+AGG + chr1_3:69181331-69181350 Msa0136940:CDS 40.0%
ATTTATTCAGGGGTTGCTAG+AGG + chr1_3:69181524-69181543 Msa0136940:intron 40.0%
!!! ATTGGCATTTTGGGTTCAAG+TGG + chr1_3:69181622-69181641 Msa0136940:CDS 40.0%
!!! TTGGCATTTTGGGTTCAAGT+GGG + chr1_3:69181623-69181642 Msa0136940:CDS 40.0%
TTCCTTCAAATTTAGCACCG+CGG - chr1_3:69182101-69182120 None:intergenic 40.0%
!! GGTCAAGCCCAAATTTGTTA+CGG + chr1_3:69182379-69182398 Msa0136940:three_prime_UTR 40.0%
GCCTTAGCCATTTCCTTTAC+TGG + chr1_3:69176624-69176643 Msa0136940:CDS 45.0%
GGTGACACCAGTAAAGGAAA+TGG - chr1_3:69176634-69176653 None:intergenic 45.0%
CACAAGTATTTCCCCACGTA+AGG - chr1_3:69177092-69177111 None:intergenic 45.0%
GCAATGGCAATGACAATGTG+TGG + chr1_3:69177185-69177204 Msa0136940:intron 45.0%
AAAAGGACTCTCACGTAAGG+GGG - chr1_3:69177255-69177274 None:intergenic 45.0%
GAAGTTAAACGAAGGAAGGC+CGG - chr1_3:69177281-69177300 None:intergenic 45.0%
AGACCATGTTGGATAACGAG+GGG - chr1_3:69177807-69177826 None:intergenic 45.0%
GTAGACCATGTTGGATAACG+AGG - chr1_3:69177809-69177828 None:intergenic 45.0%
! TACTCCTATTGCGGATTGTG+TGG + chr1_3:69178098-69178117 Msa0136940:intron 45.0%
! ACTCCTATTGCGGATTGTGT+GGG + chr1_3:69178099-69178118 Msa0136940:intron 45.0%
CTCACTGCTGTCAATTTAGG+TGG - chr1_3:69178286-69178305 None:intergenic 45.0%
CTAAAAGAACCCACTTGGGT+TGG - chr1_3:69178369-69178388 None:intergenic 45.0%
GGGACTAAAAGAACCCACTT+GGG - chr1_3:69178373-69178392 None:intergenic 45.0%
AGGGACTAAAAGAACCCACT+TGG - chr1_3:69178374-69178393 None:intergenic 45.0%
GTTGCTTAACATGTGCCCTA+AGG - chr1_3:69179029-69179048 None:intergenic 45.0%
! TCTTTGGAGAATGACCTCTC+TGG + chr1_3:69179341-69179360 Msa0136940:intron 45.0%
TTTAGACTTAGGTCCACGCT+AGG + chr1_3:69179629-69179648 Msa0136940:intron 45.0%
! ATCCACATTTTTGCCTAGCG+TGG - chr1_3:69179645-69179664 None:intergenic 45.0%
CTCATGCTAACAGATGGGAA+TGG + chr1_3:69179822-69179841 Msa0136940:intron 45.0%
TAACAGATGGGAATGGCTAG+TGG + chr1_3:69179829-69179848 Msa0136940:intron 45.0%
ACAACATGTGGACAGGCTTA+TGG + chr1_3:69179859-69179878 Msa0136940:CDS 45.0%
CCTGCTTCATGTGCAATTAG+AGG - chr1_3:69180012-69180031 None:intergenic 45.0%
CCTCTAATTGCACATGAAGC+AGG + chr1_3:69180009-69180028 Msa0136940:CDS 45.0%
! AAGCCCAGCAAAGAGGTATA+TGG - chr1_3:69180161-69180180 None:intergenic 45.0%
TATACCTCTTTGCTGGGCTT+TGG + chr1_3:69180161-69180180 Msa0136940:CDS 45.0%
AATACCAAAGCCCAGCAAAG+AGG - chr1_3:69180168-69180187 None:intergenic 45.0%
! TGGGCTTTGGTATTCAAGAC+AGG + chr1_3:69180174-69180193 Msa0136940:CDS 45.0%
TACCTTCTGCTGTGATGGTT+TGG + chr1_3:69180358-69180377 Msa0136940:CDS 45.0%
TACCAAACCATCACAGCAGA+AGG - chr1_3:69180363-69180382 None:intergenic 45.0%
GTGCTTGAAATCGTAAGGGT+CGG - chr1_3:69180654-69180673 None:intergenic 45.0%
! ATGATTGTAGCCTTGAGTGG+TGG + chr1_3:69180774-69180793 Msa0136940:intron 45.0%
GAGCTAATTGTCTTGCTCTC+TGG + chr1_3:69180803-69180822 Msa0136940:CDS 45.0%
TTTGCATGCCGCCATGTTTA+TGG + chr1_3:69181238-69181257 Msa0136940:CDS 45.0%
TAGGAGCCTTCTACCTATGT+GGG + chr1_3:69181582-69181601 Msa0136940:CDS 45.0%
AGGAATCCCACATAGGTAGA+AGG - chr1_3:69181591-69181610 None:intergenic 45.0%
!! TTGCTGCTGCATTGGCATTT+TGG + chr1_3:69181612-69181631 Msa0136940:CDS 45.0%
!! TGCTGCTGCATTGGCATTTT+GGG + chr1_3:69181613-69181632 Msa0136940:CDS 45.0%
AAGTGGGAGGAAAAGGACTT+TGG + chr1_3:69181639-69181658 Msa0136940:CDS 45.0%
GGAGGAAAAGGACTTTGGAT+TGG + chr1_3:69181644-69181663 Msa0136940:CDS 45.0%
! AACCGCGGTGCTAAATTTGA+AGG + chr1_3:69182096-69182115 Msa0136940:intron 45.0%
AGGCAATTAAGGCTAGACAG+AGG + chr1_3:69182307-69182326 Msa0136940:intron 45.0%
GCGACAATTCCCCACTTTAT+TGG + chr1_3:69182401-69182420 Msa0136940:three_prime_UTR 45.0%
!!! TATTATTTATATTTATTTCT+TGG + chr1_3:69178152-69178171 Msa0136940:intron 5.0%
!!! ATTATTTATATTTATTTCTT+GGG + chr1_3:69178153-69178172 Msa0136940:intron 5.0%
!!! AAAAAATTCTAAATTTTTTT+AGG - chr1_3:69178509-69178528 None:intergenic 5.0%
!!! ATGAATTTTTATATTTTTTA+CGG + chr1_3:69178548-69178567 Msa0136940:intron 5.0%
!!! TTAAAAAATTCTATTTTTTT+TGG + chr1_3:69178600-69178619 Msa0136940:intron 5.0%
!! ACAAAAATTAAATTAAAAAT+AGG + chr1_3:69178673-69178692 Msa0136940:intron 5.0%
!! CAAAAATTAAATTAAAAATA+GGG + chr1_3:69178674-69178693 Msa0136940:intron 5.0%
GGGTGAAGAGAGAAGAGTGA+TGG + chr1_3:69176380-69176399 Msa0136940:CDS 50.0%
CAGCTACCATAGGACCTGAT+AGG - chr1_3:69176524-69176543 None:intergenic 50.0%
GAAACCGGTGACACCAGTAA+AGG - chr1_3:69176640-69176659 None:intergenic 50.0%
GCTTACCAGGAAGCTGAAAC+CGG - chr1_3:69176655-69176674 None:intergenic 50.0%
AAAACTCAGTATCCCGTCCG+AGG + chr1_3:69176691-69176710 Msa0136940:intron 50.0%
AATGTGTGGCCCAGATGCAA+TGG + chr1_3:69177199-69177218 Msa0136940:intron 50.0%
CGAAGGAAGGCCGGAAAAAA+AGG - chr1_3:69177272-69177291 None:intergenic 50.0%
AACTCATGAAGAGGGCCATG+AGG + chr1_3:69177570-69177589 Msa0136940:intron 50.0%
ATGAAGAGGGCCATGAGGTT+TGG + chr1_3:69177575-69177594 Msa0136940:intron 50.0%
ATAATGGCGGCCAAACCTCA+TGG - chr1_3:69177588-69177607 None:intergenic 50.0%
ACCATGTTGGATAACGAGGG+GGG - chr1_3:69177805-69177824 None:intergenic 50.0%
GACCATGTTGGATAACGAGG+GGG - chr1_3:69177806-69177825 None:intergenic 50.0%
CATCCCACACAATCCGCAAT+AGG - chr1_3:69178105-69178124 None:intergenic 50.0%
TTGTGTGGGATGTGCCTTCT+AGG + chr1_3:69178113-69178132 Msa0136940:intron 50.0%
!! GTGGTATTGGCTTGGGACTT+GGG - chr1_3:69178342-69178361 None:intergenic 50.0%
!! AGTGGTATTGGCTTGGGACT+TGG - chr1_3:69178343-69178362 None:intergenic 50.0%
AGTCCCAAGCCAATACCACT+AGG + chr1_3:69178343-69178362 Msa0136940:intron 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG - chr1_3:69178349-69178368 None:intergenic 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG - chr1_3:69178350-69178369 None:intergenic 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG - chr1_3:69178355-69178374 None:intergenic 50.0%
GTCCACGCTAGGCAAAAATG+TGG + chr1_3:69179640-69179659 Msa0136940:intron 50.0%
CGCTATACCTTCTGCTGTGA+TGG + chr1_3:69180353-69180372 Msa0136940:CDS 50.0%
GCTCATATGACCACCACTCA+AGG - chr1_3:69180787-69180806 None:intergenic 50.0%
GCTGCAGCACCAATTCCAAA+TGG - chr1_3:69181001-69181020 None:intergenic 50.0%
!! TTGGAATTGGTGCTGCAGCA+AGG + chr1_3:69181002-69181021 Msa0136940:CDS 50.0%
ACGGCAACACGTGCTTCAAA+TGG - chr1_3:69181163-69181182 None:intergenic 50.0%
AACATGGCGGCATGCAAAGA+GGG - chr1_3:69181236-69181255 None:intergenic 50.0%
AAACATGGCGGCATGCAAAG+AGG - chr1_3:69181237-69181256 None:intergenic 50.0%
CTAGGAGCCTTCTACCTATG+TGG + chr1_3:69181581-69181600 Msa0136940:CDS 50.0%
CAGCAACAGGAATCCCACAT+AGG - chr1_3:69181598-69181617 None:intergenic 50.0%
GATTCCTGTTGCTGCTGCAT+TGG + chr1_3:69181604-69181623 Msa0136940:CDS 50.0%
AATGCCAATGCAGCAGCAAC+AGG - chr1_3:69181611-69181630 None:intergenic 50.0%
!!! GCATTTTGGGTTCAAGTGGG+AGG + chr1_3:69181626-69181645 Msa0136940:CDS 50.0%
TGGGTTCAAGTGGGAGGAAA+AGG + chr1_3:69181632-69181651 Msa0136940:CDS 50.0%
!! TGTCACCGGTTTCAGCTTCC+TGG + chr1_3:69176647-69176666 Msa0136940:CDS 55.0%
GTTGTGTGGCCCAGATGCAA+TGG + chr1_3:69177169-69177188 Msa0136940:intron 55.0%
! GTCACCGTGCCATTGCATCT+GGG - chr1_3:69177211-69177230 None:intergenic 55.0%
! TGTCACCGTGCCATTGCATC+TGG - chr1_3:69177212-69177231 None:intergenic 55.0%
CCATGTTGGATAACGAGGGG+GGG - chr1_3:69177804-69177823 None:intergenic 55.0%
GAATCGAACCTGAGACCTCG+AGG + chr1_3:69178305-69178324 Msa0136940:intron 55.0%
TACCACTAGGCCAACCCAAG+TGG + chr1_3:69178356-69178375 Msa0136940:intron 55.0%
ACCACTAGGCCAACCCAAGT+GGG + chr1_3:69178357-69178376 Msa0136940:intron 55.0%
! AGCATACAAGGCGTTCTCGC+AGG + chr1_3:69181343-69181362 Msa0136940:CDS 55.0%
TCAGGGGTTGCTAGAGGTTG+TGG + chr1_3:69181530-69181549 Msa0136940:intron 55.0%
CAGGGGTTGCTAGAGGTTGT+GGG + chr1_3:69181531-69181550 Msa0136940:intron 55.0%
GGTTGTGGGTGGCAACACAT+AGG + chr1_3:69181545-69181564 Msa0136940:CDS 55.0%
GTGGCCCAGATGCAATGGCA+CGG + chr1_3:69177174-69177193 Msa0136940:intron 60.0%
CACGTAAGGGGGTGGCACTT+TGG - chr1_3:69177244-69177263 None:intergenic 60.0%
AGGACTCTCACGTAAGGGGG+TGG - chr1_3:69177252-69177271 None:intergenic 60.0%
CCCCCCCTCGTTATCCAACA+TGG + chr1_3:69177801-69177820 Msa0136940:intron 60.0%
TCGAACCTGAGACCTCGAGG+AGG + chr1_3:69178308-69178327 Msa0136940:intron 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG - chr1_3:69178361-69178380 None:intergenic 60.0%
CGTCACTGTCTTGGCTCCTC+TGG + chr1_3:69181297-69181316 Msa0136940:CDS 60.0%
GGGTTGCTAGAGGTTGTGGG+TGG + chr1_3:69181534-69181553 Msa0136940:CDS 60.0%
GTGCTCCTCCTCGAGGTCTC+AGG - chr1_3:69178316-69178335 None:intergenic 65.0%
! TGGGAGTGTGCTCCTCCTCG+AGG - chr1_3:69178323-69178342 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 69176300 69182538 69176300 ID=Msa0136940;Name=Msa0136940
chr1_3 mRNA 69176300 69182538 69176300 ID=Msa0136940-mRNA-1;Parent=Msa0136940;Name=Msa0136940-mRNA-1;_AED=0.11;_eAED=0.11;_QI=78|1|1|1|0.85|0.75|8|139|495
chr1_3 exon 69176300 69176668 69176300 ID=Msa0136940-mRNA-1:exon:23845;Parent=Msa0136940-mRNA-1
chr1_3 exon 69179835 69180379 69179835 ID=Msa0136940-mRNA-1:exon:23846;Parent=Msa0136940-mRNA-1
chr1_3 exon 69180784 69180870 69180784 ID=Msa0136940-mRNA-1:exon:23847;Parent=Msa0136940-mRNA-1
chr1_3 exon 69180967 69181023 69180967 ID=Msa0136940-mRNA-1:exon:23848;Parent=Msa0136940-mRNA-1
chr1_3 exon 69181126 69181364 69181126 ID=Msa0136940-mRNA-1:exon:23849;Parent=Msa0136940-mRNA-1
chr1_3 exon 69181534 69181739 69181534 ID=Msa0136940-mRNA-1:exon:23850;Parent=Msa0136940-mRNA-1
chr1_3 exon 69182309 69182420 69182309 ID=Msa0136940-mRNA-1:exon:23851;Parent=Msa0136940-mRNA-1
chr1_3 exon 69182449 69182538 69182449 ID=Msa0136940-mRNA-1:exon:23852;Parent=Msa0136940-mRNA-1
chr1_3 five_prime_UTR 69176300 69176377 69176300 ID=Msa0136940-mRNA-1:five_prime_utr;Parent=Msa0136940-mRNA-1
chr1_3 CDS 69176378 69176668 69176378 ID=Msa0136940-mRNA-1:cds;Parent=Msa0136940-mRNA-1
chr1_3 CDS 69179835 69180379 69179835 ID=Msa0136940-mRNA-1:cds;Parent=Msa0136940-mRNA-1
chr1_3 CDS 69180784 69180870 69180784 ID=Msa0136940-mRNA-1:cds;Parent=Msa0136940-mRNA-1
chr1_3 CDS 69180967 69181023 69180967 ID=Msa0136940-mRNA-1:cds;Parent=Msa0136940-mRNA-1
chr1_3 CDS 69181126 69181364 69181126 ID=Msa0136940-mRNA-1:cds;Parent=Msa0136940-mRNA-1
chr1_3 CDS 69181534 69181739 69181534 ID=Msa0136940-mRNA-1:cds;Parent=Msa0136940-mRNA-1
chr1_3 CDS 69182309 69182371 69182309 ID=Msa0136940-mRNA-1:cds;Parent=Msa0136940-mRNA-1
chr1_3 three_prime_UTR 69182372 69182420 69182372 ID=Msa0136940-mRNA-1:three_prime_utr;Parent=Msa0136940-mRNA-1
chr1_3 three_prime_UTR 69182449 69182538 69182449 ID=Msa0136940-mRNA-1:three_prime_utr;Parent=Msa0136940-mRNA-1
Gene Sequence

>Msa0136940

ATGGGTGAAGAGAGAAGAGTGATGGAAGAGAGTCTCTTATCAAAACAAATTGATTCGAAAGCAGAGAATGACAATGAAGAAGAGAGAAAGAATAGAGAAATTAGTTGGGATATTTACACGAAAGAATTGAAGAGGATTTGTTACCTATCAGGTCCTATGGTAGCTGTAACATCTTCACAATATCTTTTACAGGTTGTGTCCATCATGATTGTTGGTCACTTAGGTGAACTCTATCTCTCTAGTGCCGCCTTAGCCATTTCCTTTACTGGTGTCACCGGTTTCAGCTTCCTGATGGGAATGGCTAGTGGACTAGAAACAACATGTGGACAGGCTTATGGAGCTAAACAATATCAAAGAATAGGAGTACAAACATACACATCTATATTTTCTCTCATATTGGTTTGTTTACCACTCTCTTTTATTTGGATCAACATTGAGAACATACTAGTTTTCACAGGACAAGACCCTCTAATTGCACATGAAGCAGGAAGATTCACAATTTGGCTTCTTCCAGCACTTTTTGCATATGCAATATTGCAACCACTAGTTAGATATTTTCAAATACAAAGCTTGCTTATTCCAATGCTTTTAAGCTCTTGTGTCACTCTTTGTATCCATATACCTCTTTGCTGGGCTTTGGTATTCAAGACAGGATTGAGTAATATTGGTGGTGCAATTGCAATGAGCATTTCCATTTGGTTAAATGTGATTTTTCTTGGATTATACATGAGATACTCTTCCTCATGCGCAAAAACTAGAGCGCCAATTTCTATGGAACTATTTCAAGGAATTTGGGAGTTTTTTCGCTTCGCTATACCTTCTGCTGTGATGGTTTGCCTTGAGTGGTGGTCATATGAGCTAATTGTCTTGCTCTCTGGACTTTTACCTAATCCACAACTTGAAACTTCAGTTCTATCAGTTTGTCTCAATACCATTGCAACTCTCTATACAATACCATTTGGAATTGGTGCTGCAGCAAGTACAAGGGTTTCAAATGAATTAGGAGCTGGTAATCCATTTGAAGCACGTGTTGCCGTGTTAGCTGCTATGTCACTTGCACTCACTGAAGCAAGTATAGTGAGCGCAACCCTCTTTGCATGCCGCCATGTTTATGGCTACATTTTCAGTAGTGATACGGAAGTTGTTAAATACGTCACTGTCTTGGCTCCTCTGGTTTCTATATCTGTTATACTCGACAGCATACAAGGCGTTCTCGCAGGGGTTGCTAGAGGTTGTGGGTGGCAACACATAGGAGTTTATGTGAATCTAGGAGCCTTCTACCTATGTGGGATTCCTGTTGCTGCTGCATTGGCATTTTGGGTTCAAGTGGGAGGAAAAGGACTTTGGATTGGTATACAAGTCGGTGCTTTTGTTCAATGTATTCTACTTTCTATCATAACATGTTGTATAAATTGGGAGCAACTGGCAATTAAGGCTAGACAGAGGTTGTTTGATGTTCAATTTTCTGGAGACAATAGATTGGTATGA
Protein sequence

>Msa0136940

MGEERRVMEESLLSKQIDSKAENDNEEERKNREISWDIYTKELKRICYLSGPMVAVTSSQYLLQVVSIMIVGHLGELYLSSAALAISFTGVTGFSFLMGMASGLETTCGQAYGAKQYQRIGVQTYTSIFSLILVCLPLSFIWINIENILVFTGQDPLIAHEAGRFTIWLLPALFAYAILQPLVRYFQIQSLLIPMLLSSCVTLCIHIPLCWALVFKTGLSNIGGAIAMSISIWLNVIFLGLYMRYSSSCAKTRAPISMELFQGIWEFFRFAIPSAVMVCLEWWSYELIVLLSGLLPNPQLETSVLSVCLNTIATLYTIPFGIGAAASTRVSNELGAGNPFEARVAVLAAMSLALTEASIVSATLFACRHVYGYIFSSDTEVVKYVTVLAPLVSISVILDSIQGVLAGVARGCGWQHIGVYVNLGAFYLCGIPVAAALAFWVQVGGKGLWIGIQVGAFVQCILLSIITCCINWEQLAIKARQRLFDVQFSGDNRLV*