AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1361780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1361780 MtrunA17_Chr1g0208821 97.576 495 12 0 1 495 1 495 0.0 977
Msa1361780 MtrunA17_Chr1g0208881 58.714 482 190 1 8 489 1 473 0.0 577
Msa1361780 MtrunA17_Chr1g0208891 58.787 478 187 1 8 485 1 468 0.0 577
Msa1361780 MtrunA17_Chr7g0251331 55.368 475 206 3 23 492 4 477 0.0 535
Msa1361780 MtrunA17_Chr6g0449061 48.760 484 241 2 13 495 8 485 2.35e-167 481
Msa1361780 MtrunA17_Chr6g0483381 50.943 477 227 2 11 485 2 473 5.38e-166 478
Msa1361780 MtrunA17_Chr6g0483361 49.476 477 232 2 11 485 2 471 7.14e-162 467
Msa1361780 MtrunA17_Chr6g0477961 48.596 463 235 2 26 485 11 473 9.38e-151 439
Msa1361780 MtrunA17_Chr1g0208791 46.610 472 252 0 8 479 10 481 1.80e-147 431
Msa1361780 MtrunA17_Chr8g0392601 45.714 455 244 1 29 483 3 454 4.66e-135 399
Msa1361780 MtrunA17_Chr6g0483351 51.459 377 181 1 100 474 1 377 2.44e-132 390
Msa1361780 MtrunA17_Chr7g0251321 49.870 385 172 3 100 483 1 365 1.62e-127 376
Msa1361780 MtrunA17_Chr6g0483331 44.295 447 248 1 40 485 11 457 1.49e-124 371
Msa1361780 MtrunA17_Chr6g0483341 41.719 477 273 2 14 485 10 486 5.03e-124 371
Msa1361780 MtrunA17_Chr2g0317131 38.478 473 291 0 9 481 11 483 1.44e-108 331
Msa1361780 MtrunA17_Chr2g0317151 39.331 478 283 3 8 482 1 474 5.15e-108 329
Msa1361780 MtrunA17_Chr6g0483161 44.562 377 190 1 98 474 1 358 1.55e-105 319
Msa1361780 MtrunA17_Chr4g0024501 37.083 480 295 1 11 483 27 506 1.84e-105 324
Msa1361780 MtrunA17_Chr2g0317161 37.740 469 282 2 18 481 8 471 6.29e-104 319
Msa1361780 MtrunA17_Chr2g0322671 36.939 490 299 2 4 483 5 494 2.01e-102 316
Msa1361780 MtrunA17_Chr2g0317171 36.920 474 284 3 18 481 9 477 1.00e-98 306
Msa1361780 MtrunA17_Chr5g0428251 33.476 466 306 2 18 481 32 495 2.40e-89 284
Msa1361780 MtrunA17_Chr2g0317221 39.487 390 226 2 97 481 7 391 3.93e-89 278
Msa1361780 MtrunA17_Chr2g0288281 37.760 384 239 0 100 483 1 384 6.38e-86 270
Msa1361780 MtrunA17_Chr6g0467321 31.633 490 320 6 5 481 4 491 9.24e-86 273
Msa1361780 MtrunA17_Chr5g0412771 34.910 444 284 3 42 483 57 497 1.53e-83 267
Msa1361780 MtrunA17_Chr3g0140931 33.473 478 299 6 12 481 25 491 3.67e-83 267
Msa1361780 MtrunA17_Chr5g0397991 32.675 456 301 2 29 481 53 505 8.75e-83 266
Msa1361780 MtrunA17_Chr8g0368001 34.228 447 289 3 39 483 48 491 1.75e-81 262
Msa1361780 MtrunA17_Chr5g0442331 33.742 489 313 4 10 492 11 494 6.57e-81 260
Msa1361780 MtrunA17_Chr5g0412541 35.520 442 279 4 42 480 37 475 1.29e-80 259
Msa1361780 MtrunA17_Chr8g0389801 32.823 457 301 4 26 480 8 460 6.24e-79 254
Msa1361780 MtrunA17_Chr1g0203791 32.059 471 307 5 16 481 42 504 1.72e-78 255
Msa1361780 MtrunA17_Chr6g0473701 30.802 474 317 4 27 493 110 579 5.66e-76 250
Msa1361780 MtrunA17_Chr7g0254511 33.196 485 307 7 1 483 1 470 7.71e-76 246
Msa1361780 MtrunA17_Chr7g0254521 34.607 445 286 3 41 483 31 472 1.27e-74 243
Msa1361780 MtrunA17_Chr3g0132531 33.613 476 304 6 10 480 17 485 4.00e-74 242
Msa1361780 MtrunA17_Chr1g0154441 36.176 387 240 4 100 483 1 383 5.63e-71 231
Msa1361780 MtrunA17_Chr6g0468531 32.914 477 311 4 8 480 1 472 3.13e-68 226
Msa1361780 MtrunA17_Chr6g0468521 32.568 479 309 7 8 480 1 471 3.15e-68 226
Msa1361780 MtrunA17_Chr7g0254531 34.635 384 250 1 100 483 1 383 1.87e-65 216
Msa1361780 MtrunA17_Chr1g0202761 30.952 462 317 1 22 483 24 483 2.18e-63 214
Msa1361780 MtrunA17_Chr4g0013031 28.370 497 312 10 19 479 18 506 4.77e-62 211
Msa1361780 MtrunA17_Chr5g0412571 34.704 389 248 4 98 483 38 423 6.39e-62 208
Msa1361780 MtrunA17_Chr2g0295631 29.322 457 307 2 41 481 20 476 2.88e-61 208
Msa1361780 MtrunA17_Chr6g0460541 34.190 389 248 3 98 483 3 386 2.86e-60 203
Msa1361780 MtrunA17_Chr6g0468511 32.735 446 290 6 8 451 1 438 8.22e-60 204
Msa1361780 MtrunA17_Chr7g0248051 31.210 471 316 2 4 474 39 501 1.93e-56 196
Msa1361780 MtrunA17_Chr6g0483264 47.059 204 108 0 280 483 1 204 5.16e-53 178
Msa1361780 MtrunA17_Chr7g0254501 34.035 285 186 1 199 483 16 298 8.88e-51 175
Msa1361780 MtrunA17_Chr6g0483241 48.066 181 94 0 98 278 1 181 4.44e-49 166
Msa1361780 MtrunA17_Chr8g0364761 34.237 295 185 5 22 309 30 322 2.45e-45 161
Msa1361780 MtrunA17_Chr3g0132541 31.849 292 198 1 42 333 42 332 5.20e-40 149
Msa1361780 MtrunA17_Chr6g0487091 33.557 298 191 4 185 480 97 389 1.35e-39 148
Msa1361780 MtrunA17_Chr5g0440661 28.338 367 200 4 100 466 1 304 6.54e-37 138
Msa1361780 MtrunA17_Chr6g0483221 43.919 148 83 0 327 474 6 153 2.48e-35 129
Msa1361780 MtrunA17_Chr6g0460521 37.198 207 130 0 277 483 1 207 8.45e-33 124
Msa1361780 MtrunA17_Chr6g0483261 44.586 157 87 0 327 483 6 162 3.93e-32 121
Msa1361780 MtrunA17_Chr5g0398571 26.871 294 198 3 196 480 1 286 1.65e-27 112
Msa1361780 MtrunA17_Chr8g0364751 39.024 164 100 0 320 483 12 175 2.59e-27 108
Msa1361780 MtrunA17_Chr7g0215591 91.379 58 5 0 350 407 1 58 3.91e-26 101
Msa1361780 MtrunA17_Chr1g0208901 35.795 176 63 3 28 203 4 129 7.92e-24 96.7
Msa1361780 MtrunA17_Chr5g0442311 30.168 179 125 0 100 278 1 179 3.91e-21 90.9
Msa1361780 MtrunA17_Chr6g0460531 28.148 270 171 7 18 278 5 260 6.10e-21 92.4
Msa1361780 MtrunA17_Chr6g0483281 49.296 71 36 0 211 281 5 75 1.42e-13 66.2
Msa1361780 MtrunA17_Chr7g0254491 34.545 110 68 1 13 122 6 111 2.49e-12 63.5
Msa1361780 MtrunA17_Chr4g0025551 30.719 153 80 5 147 297 28 156 9.10e-12 63.2
Msa1361780 MtrunA17_Chr5g0398551 38.462 78 48 0 38 115 40 117 4.82e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1361780 AT1G15170.1 59.834 483 186 2 1 483 1 475 0.0 598
Msa1361780 AT1G15150.1 59.130 460 188 0 24 483 13 472 0.0 592
Msa1361780 AT1G15160.1 59.355 465 189 0 19 483 8 472 0.0 592
Msa1361780 AT1G71140.1 60.087 461 179 1 23 483 12 467 0.0 576
Msa1361780 AT1G15180.1 59.006 483 191 1 1 483 1 476 0.0 568
Msa1361780 AT1G15170.2 65.169 356 124 0 128 483 1 356 1.69e-176 500
Msa1361780 AT1G15150.2 62.640 356 133 0 128 483 1 356 1.59e-171 488
Msa1361780 AT2G04050.1 53.846 455 206 1 40 494 25 475 6.62e-164 473
Msa1361780 AT2G04080.1 52.079 457 213 3 40 495 25 476 3.95e-163 471
Msa1361780 AT2G04100.1 49.372 478 233 2 8 483 1 471 1.60e-160 464
Msa1361780 AT2G04040.1 51.828 465 216 4 33 494 16 475 4.15e-160 463
Msa1361780 AT2G04080.2 49.787 470 222 4 8 474 1 459 2.49e-158 458
Msa1361780 AT2G04070.1 51.435 453 216 1 42 494 27 475 8.32e-158 457
Msa1361780 AT2G04100.2 48.950 476 233 3 8 480 1 469 1.90e-156 453
Msa1361780 AT2G04090.1 48.899 454 232 0 30 483 18 471 1.34e-155 451
Msa1361780 AT1G66760.2 47.817 481 240 3 5 485 2 471 9.86e-155 449
Msa1361780 AT1G66780.1 48.596 463 238 0 24 486 17 479 3.69e-153 446
Msa1361780 AT5G52450.1 49.677 465 228 1 25 483 3 467 1.05e-152 444
Msa1361780 AT1G64820.1 45.155 485 256 2 11 493 6 482 5.97e-151 441
Msa1361780 AT1G66760.1 47.357 473 238 3 5 477 2 463 2.49e-149 435
Msa1361780 AT1G73700.1 49.661 443 223 0 41 483 23 465 1.72e-148 433
Msa1361780 AT2G34360.1 47.495 459 228 4 25 482 15 461 7.18e-145 424
Msa1361780 AT1G15180.2 63.929 280 101 0 128 407 1 280 6.20e-127 376
Msa1361780 AT1G66760.4 48.387 403 197 3 5 407 2 393 4.38e-126 373
Msa1361780 AT2G34360.2 41.485 458 215 2 25 482 15 419 1.38e-120 360
Msa1361780 AT1G66760.3 48.949 333 170 0 145 477 3 335 2.85e-105 318
Msa1361780 AT3G23560.1 37.687 467 288 1 14 477 8 474 2.32e-101 313
Msa1361780 AT3G23550.1 38.261 460 280 3 19 475 6 464 7.24e-99 306
Msa1361780 AT1G61890.1 36.878 442 279 0 42 483 47 488 4.66e-98 305
Msa1361780 AT3G21690.1 38.235 442 273 0 42 483 52 493 2.03e-97 303
Msa1361780 AT1G61890.2 35.991 464 290 3 18 474 16 479 5.35e-96 299
Msa1361780 AT1G11670.1 34.343 495 309 4 1 483 1 491 9.78e-95 296
Msa1361780 AT1G61890.3 35.435 460 289 4 18 470 16 474 7.71e-89 280
Msa1361780 AT3G26590.1 35.794 447 282 3 39 483 42 485 2.83e-87 277
Msa1361780 AT5G38030.1 33.676 487 314 4 3 483 2 485 6.04e-87 276
Msa1361780 AT3G59030.1 34.082 490 302 7 10 483 8 492 2.24e-85 272
Msa1361780 AT1G23300.1 34.774 486 309 4 3 483 2 484 2.54e-85 272
Msa1361780 AT1G12950.1 36.036 444 279 3 42 483 67 507 2.69e-85 272
Msa1361780 AT5G44050.1 34.990 483 307 5 4 483 3 481 9.72e-85 270
Msa1361780 AT1G71870.1 31.590 497 317 5 17 493 1 494 9.67e-84 268
Msa1361780 AT4G29140.1 33.958 480 313 4 3 480 17 494 1.82e-81 263
Msa1361780 AT4G21910.2 35.347 447 278 4 42 483 57 497 3.07e-81 261
Msa1361780 AT4G21910.4 35.347 447 278 4 42 483 57 497 3.07e-81 261
Msa1361780 AT4G21903.1 35.593 413 263 2 72 483 83 493 6.46e-81 260
Msa1361780 AT4G21910.3 35.123 447 279 4 42 483 55 495 8.27e-81 260
Msa1361780 AT4G21910.1 35.123 447 279 4 42 483 55 495 8.27e-81 260
Msa1361780 AT1G47530.1 34.884 473 295 8 17 483 10 475 1.09e-79 256
Msa1361780 AT1G58340.1 32.510 486 309 6 9 481 18 497 1.47e-79 258
Msa1361780 AT3G23560.2 36.524 397 249 1 14 407 8 404 6.84e-79 253
Msa1361780 AT4G21903.2 34.845 419 266 3 72 485 83 499 3.48e-78 254
Msa1361780 AT4G21903.3 35.677 384 247 0 100 483 1 384 1.26e-77 248
Msa1361780 AT5G65380.1 33.824 476 310 3 9 483 7 478 1.03e-76 249
Msa1361780 AT3G26590.2 36.458 384 243 1 100 483 1 383 6.90e-76 244
Msa1361780 AT4G23030.1 33.547 468 300 5 20 481 10 472 1.81e-75 246
Msa1361780 AT5G19700.1 30.480 479 328 1 3 481 2 475 1.88e-74 244
Msa1361780 AT5G52050.1 31.084 489 318 5 1 480 1 479 3.78e-74 243
Msa1361780 AT2G38510.1 31.757 444 298 5 41 481 5 446 1.41e-73 241
Msa1361780 AT5G10420.1 34.120 466 299 4 20 483 20 479 4.65e-73 239
Msa1361780 AT1G33090.1 34.454 476 301 5 1 474 1 467 7.09e-73 239
Msa1361780 AT1G33110.1 32.981 473 311 4 13 483 8 476 1.13e-71 236
Msa1361780 AT1G33100.1 34.120 466 294 6 13 474 8 464 7.18e-71 234
Msa1361780 AT1G33080.1 32.784 485 315 5 1 483 1 476 4.74e-70 232
Msa1361780 AT4G00350.1 34.009 444 287 3 42 483 88 527 7.97e-70 233
Msa1361780 AT1G33080.2 32.573 482 314 5 1 480 1 473 1.09e-69 231
Msa1361780 AT1G47530.2 37.179 390 232 8 100 483 1 383 8.94e-69 225
Msa1361780 AT5G49130.1 32.166 457 292 7 41 481 25 479 2.39e-68 228
Msa1361780 AT3G59030.2 33.575 414 254 7 10 407 8 416 7.09e-66 219
Msa1361780 AT4G25640.1 33.190 464 307 2 20 483 13 473 1.96e-64 217
Msa1361780 AT4G25640.2 33.190 464 307 2 20 483 13 473 4.11e-64 216
Msa1361780 AT4G25640.3 33.412 425 280 2 20 444 13 434 1.25e-60 206
Msa1361780 AT4G22790.1 29.915 468 314 4 25 480 5 470 8.64e-57 196
Msa1361780 AT3G03620.2 28.184 479 333 6 18 492 17 488 4.40e-50 179
Msa1361780 AT3G03620.1 28.184 479 333 6 18 492 17 488 4.40e-50 179
Msa1361780 AT1G33110.2 31.156 398 268 4 13 408 8 401 6.62e-50 176
Msa1361780 AT5G17700.2 28.512 477 330 5 8 483 8 474 3.36e-49 176
Msa1361780 AT5G17700.1 28.512 477 330 5 8 483 8 474 3.36e-49 176
Msa1361780 AT2G04066.1 51.181 127 62 0 361 487 41 167 1.19e-38 139
Msa1361780 AT5G17700.3 27.681 401 279 5 8 407 8 398 5.43e-34 132

Find 108 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATAACATGTTGTATAAAT+TGG 0.106809 tig0017633:+6827 Msa1361780:CDS
TGGAACTATTTCAAGGAATT+TGG 0.108281 tig0017633:+5435 Msa1361780:CDS
AATTGTCGCCGTAACAAATT+TGG 0.138232 tig0017633:-7510 Msa1361780:intergenic
TTGCTGCTGCATTGGCATTT+TGG 0.153192 tig0017633:+6731 Msa1361780:CDS
TTTGCATGCCGCCATGTTTA+TGG 0.161252 tig0017633:+6357 Msa1361780:CDS
GCCTTAGCCATTTCCTTTAC+TGG 0.165328 tig0017633:+1083 Msa1361780:CDS
TTTACTAATGCAGGCAATTA+AGG 0.237076 tig0017633:+7419 Msa1361780:intron
AAGCAGGAAGATTCACAATT+TGG 0.240770 tig0017633:+5144 Msa1361780:CDS
ACAAGGGTTTCAAATGAATT+AGG 0.244096 tig0017633:+6246 Msa1361780:CDS
TGAAATAGTTCCATAGAAAT+TGG 0.245398 tig0017633:-5425 Msa1361780:intergenic
CTTCTTCTTATTCTTTGAAA+TGG 0.272579 tig0017633:+818 Msa1361780:exon
GAAGTTTCAAGTTGTGGATT+AGG 0.295229 tig0017633:-5952 Msa1361780:intergenic
GGAACTATTTCAAGGAATTT+GGG 0.312614 tig0017633:+5436 Msa1361780:CDS
AAGACAGGATTGAGTAATAT+TGG 0.317710 tig0017633:+5308 Msa1361780:CDS
AACTAGAGCGCCAATTTCTA+TGG 0.323580 tig0017633:+5415 Msa1361780:CDS
TGTCACCGGTTTCAGCTTCC+TGG 0.324030 tig0017633:+1106 Msa1361780:CDS
AAGAGGATTTGTTACCTATC+AGG 0.328940 tig0017633:+966 Msa1361780:CDS
GAAAGAATAGAGAAATTAGT+TGG 0.332532 tig0017633:+922 Msa1361780:CDS
TCAGGGGTTGCTAGAGGTTG+TGG 0.334964 tig0017633:+6649 Msa1361780:intron
CCTGCTTCATGTGCAATTAG+AGG 0.339106 tig0017633:-5128 Msa1361780:intergenic
TATACCTCTTTGCTGGGCTT+TGG 0.339839 tig0017633:+5280 Msa1361780:CDS
TACCTTCTGCTGTGATGGTT+TGG 0.347556 tig0017633:+5477 Msa1361780:CDS
GTATCCATATACCTCTTTGC+TGG 0.350676 tig0017633:+5273 Msa1361780:CDS
ACAACATGTGGACAGGCTTA+TGG 0.351982 tig0017633:+4978 Msa1361780:CDS
TTCTTCTTATTCTTTGAAAT+GGG 0.354208 tig0017633:+819 Msa1361780:exon
AAACTTCAGTTCTATCAGTT+TGG 0.355601 tig0017633:+5968 Msa1361780:CDS
CGCTATACCTTCTGCTGTGA+TGG 0.376002 tig0017633:+5472 Msa1361780:CDS
AAGCCCAGCAAAGAGGTATA+TGG 0.387347 tig0017633:-5277 Msa1361780:intergenic
TATACAATACCATTTGGAAT+TGG 0.396274 tig0017633:+6108 Msa1361780:CDS
CAGGGGTTGCTAGAGGTTGT+GGG 0.399326 tig0017633:+6650 Msa1361780:intron
GATTCCTGTTGCTGCTGCAT+TGG 0.404386 tig0017633:+6723 Msa1361780:CDS
GAGCTAATTGTCTTGCTCTC+TGG 0.405045 tig0017633:+5922 Msa1361780:CDS
ATTGTCGCCGTAACAAATTT+GGG 0.406688 tig0017633:-7509 Msa1361780:intergenic
CGTCACTGTCTTGGCTCCTC+TGG 0.408539 tig0017633:+6416 Msa1361780:CDS
CATAACATGTTGTATAAATT+GGG 0.412639 tig0017633:+6828 Msa1361780:CDS
AAAAGAATACGGATTGAGAT+TGG 0.414241 tig0017633:-788 Msa1361780:intergenic
TTGTATAAATTGGGAGCAAC+TGG 0.416206 tig0017633:+6837 Msa1361780:CDS
TGGGTTCAAGTGGGAGGAAA+AGG 0.421749 tig0017633:+6751 Msa1361780:CDS
TTGCAATGAGCATTTCCATT+TGG 0.422457 tig0017633:+5339 Msa1361780:CDS
ATTTCTATGGAACTATTTCA+AGG 0.422594 tig0017633:+5428 Msa1361780:CDS
TATCCATATACCTCTTTGCT+GGG 0.424522 tig0017633:+5274 Msa1361780:CDS
GCTAAACAATATCAAAGAAT+AGG 0.430267 tig0017633:+5002 Msa1361780:CDS
ACTCTCTATACAATACCATT+TGG 0.442113 tig0017633:+6102 Msa1361780:CDS
AAAGAATAGAGAAATTAGTT+GGG 0.445277 tig0017633:+923 Msa1361780:CDS
ATAGGAGTTTATGTGAATCT+AGG 0.460939 tig0017633:+6682 Msa1361780:CDS
AGGAATCCCACATAGGTAGA+AGG 0.467641 tig0017633:-6707 Msa1361780:intergenic
TTGTTACCTATCAGGTCCTA+TGG 0.468502 tig0017633:+974 Msa1361780:CDS
ACGGCAACACGTGCTTCAAA+TGG 0.468974 tig0017633:-6279 Msa1361780:intergenic
AAGTGGGAGGAAAAGGACTT+TGG 0.475738 tig0017633:+6758 Msa1361780:CDS
CTGCTTCATGTGCAATTAGA+GGG 0.480437 tig0017633:-5127 Msa1361780:intergenic
AGAACTGAAGTTTCAAGTTG+TGG 0.486860 tig0017633:-5958 Msa1361780:intergenic
AGCATACAAGGCGTTCTCGC+AGG 0.492812 tig0017633:+6462 Msa1361780:CDS
AATGCCAATGCAGCAGCAAC+AGG 0.494774 tig0017633:-6727 Msa1361780:intergenic
GGGTGAAGAGAGAAGAGTGA+TGG 0.495934 tig0017633:+839 Msa1361780:CDS
ACACAAGAGCTTAAAAGCAT+TGG 0.497017 tig0017633:-5242 Msa1361780:intergenic
GGTCAAGCCCAAATTTGTTA+CGG 0.497827 tig0017633:+7502 Msa1361780:three_prime_UTR
TGTTAAATACGTCACTGTCT+TGG 0.503008 tig0017633:+6407 Msa1361780:CDS
TGGGCTTTGGTATTCAAGAC+AGG 0.506637 tig0017633:+5293 Msa1361780:CDS
CTAATTAAAATAAGATAAAG+TGG 0.510828 tig0017633:-7535 Msa1361780:intergenic
CCTCTAATTGCACATGAAGC+AGG 0.510834 tig0017633:+5128 Msa1361780:CDS
ATCATGATTGTTGGTCACTT+AGG 0.513601 tig0017633:+1038 Msa1361780:CDS
TTTACACGAAAGAATTGAAG+AGG 0.519436 tig0017633:+949 Msa1361780:CDS
GCTTACCAGGAAGCTGAAAC+CGG 0.522233 tig0017633:-1111 Msa1361780:intergenic
CAGCTACCATAGGACCTGAT+AGG 0.522912 tig0017633:-980 Msa1361780:intergenic
GGTGACACCAGTAAAGGAAA+TGG 0.523197 tig0017633:-1090 Msa1361780:intergenic
GGAGGAAAAGGACTTTGGAT+TGG 0.526302 tig0017633:+6763 Msa1361780:CDS
ATTTCCTTTACTGGTGTCAC+CGG 0.526363 tig0017633:+1092 Msa1361780:CDS
GTTTCAAATGAATTAGGAGC+TGG 0.528676 tig0017633:+6252 Msa1361780:CDS
GTTGTGTCCATCATGATTGT+TGG 0.531106 tig0017633:+1029 Msa1361780:CDS
GTTATACTCGACAGCATACA+AGG 0.534553 tig0017633:+6450 Msa1361780:CDS
ATAGATTGGTATGATAAGAA+AGG 0.548860 tig0017633:+7481 Msa1361780:exon
ATTTGAAAATATCTAACTAG+TGG 0.558930 tig0017633:-5203 Msa1361780:intergenic
ACCAGTAAAGGAAATGGCTA+AGG 0.566283 tig0017633:-1084 Msa1361780:intergenic
CTAGGAGCCTTCTACCTATG+TGG 0.568455 tig0017633:+6700 Msa1361780:CDS
TAATTAAAATAAGATAAAGT+GGG 0.568828 tig0017633:-7534 Msa1361780:intergenic
AACATGGCGGCATGCAAAGA+GGG 0.570292 tig0017633:-6352 Msa1361780:intergenic
GCTGCAGCACCAATTCCAAA+TGG 0.574096 tig0017633:-6117 Msa1361780:intergenic
TACCAAACCATCACAGCAGA+AGG 0.580285 tig0017633:-5479 Msa1361780:intergenic
TAGGAGCCTTCTACCTATGT+GGG 0.586277 tig0017633:+6701 Msa1361780:CDS
ATTTATTCAGGGGTTGCTAG+AGG 0.587635 tig0017633:+6643 Msa1361780:intron
CTTTGGATTGGTATACAAGT+CGG 0.590240 tig0017633:+6775 Msa1361780:CDS
ACTAGAAACAACATGTGGAC+AGG 0.594187 tig0017633:+4971 Msa1361780:CDS
TAAGTGACCAACAATCATGA+TGG 0.595343 tig0017633:-1036 Msa1361780:intergenic
CTCTGAATATTATAGTACAA+GGG 0.600517 tig0017633:+6230 Msa1361780:intron
TTGATGATTGTAGCCTTGAG+TGG 0.607253 tig0017633:+5890 Msa1361780:intron
GGTTGTGGGTGGCAACACAT+AGG 0.610292 tig0017633:+6664 Msa1361780:CDS
TAACAGATGGGAATGGCTAG+TGG 0.610311 tig0017633:+4948 Msa1361780:intron
GCTCATATGACCACCACTCA+AGG 0.611921 tig0017633:-5903 Msa1361780:intergenic
GAAACCGGTGACACCAGTAA+AGG 0.616842 tig0017633:-1096 Msa1361780:intergenic
TTGGAATTGGTGCTGCAGCA+AGG 0.618649 tig0017633:+6121 Msa1361780:CDS
AAACATGGCGGCATGCAAAG+AGG 0.622373 tig0017633:-6353 Msa1361780:intergenic
ATATATAATAAATATAGAGT+CGG 0.624058 tig0017633:-757 Msa1361780:intergenic
TTGATCCAAATAAAAGAGAG+TGG 0.624093 tig0017633:-5071 Msa1361780:intergenic
GGGTTGCTAGAGGTTGTGGG+TGG 0.624099 tig0017633:+6653 Msa1361780:CDS
AAGTGACATAGCAGCTAACA+CGG 0.624301 tig0017633:-6298 Msa1361780:intergenic
ATGATTGTAGCCTTGAGTGG+TGG 0.624582 tig0017633:+5893 Msa1361780:intron
AATACCAAAGCCCAGCAAAG+AGG 0.626723 tig0017633:-5284 Msa1361780:intergenic
ACAGGATTGAGTAATATTGG+TGG 0.628730 tig0017633:+5311 Msa1361780:CDS
GAAGATGTTACAGCTACCAT+AGG 0.629703 tig0017633:-990 Msa1361780:intergenic
AGTAAAGGAAATGGCTAAGG+CGG 0.639044 tig0017633:-1081 Msa1361780:intergenic
CAGCAACAGGAATCCCACAT+AGG 0.643167 tig0017633:-6714 Msa1361780:intergenic
TATTGTATAGAGAGTTGCAA+TGG 0.643527 tig0017633:-6094 Msa1361780:intergenic
AATTAAAATAAGATAAAGTG+GGG 0.664413 tig0017633:-7533 Msa1361780:intergenic
ATAACAGATATAGAAACCAG+AGG 0.672251 tig0017633:-6432 Msa1361780:intergenic
CTCATGCTAACAGATGGGAA+TGG 0.678937 tig0017633:+4941 Msa1361780:intron
AGTGGACTAGAAACAACATG+TGG 0.725232 tig0017633:+4966 Msa1361780:CDS
AAATGTAGCCATAAACATGG+CGG 0.730057 tig0017633:-6365 Msa1361780:intergenic
AGGCAATTAAGGCTAGACAG+AGG 0.770785 tig0017633:+7430 Msa1361780:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAATAAATATAGAGT+CGG - tig0017633:760-779 Msa0542330:intergenic 10.0%
!! AATTATAAATTAGACAAATA+CGG + tig0017633:1407-1426 Msa1361780:intron 10.0%
!! ATATTATTAGAAACATTTAA+TGG + tig0017633:2222-2241 Msa1361780:intron 10.0%
!!! TTTTTAAGCTAATAAAAAAA+AGG + tig0017633:2753-2772 Msa1361780:intron 10.0%
!!! TTTTTAAGCTAATAAAAAAA+AGG + tig0017633:2753-2772 Msa1361780:intron 10.0%
!! CATTTATATATATAAAGATA+TGG + tig0017633:2894-2913 Msa1361780:intron 10.0%
!!! TATAATATTTTGAATTTTTC+TGG - tig0017633:3593-3612 Msa1361780:intergenic 10.0%
!! AATATATCATTCAAATTTAA+TGG - tig0017633:5858-5877 Msa1361780:intergenic 10.0%
!! TAATTAAAATAAGATAAAGT+GGG - tig0017633:7537-7556 Msa1361780:intergenic 10.0%
!! ATTATAAATTAGACAAATAC+GGG + tig0017633:1408-1427 Msa1361780:intron 15.0%
!!! TTTTAATGGTCAAATAATAA+TGG - tig0017633:1956-1975 Msa1361780:intergenic 15.0%
!!! AAGTTAGATATTTTATAAGT+AGG + tig0017633:2041-2060 Msa1361780:intron 15.0%
!! TAAATCAAAAAAATTGTTAG+TGG + tig0017633:2655-2674 Msa1361780:intron 15.0%
!! TTAAACATACACAAATAAAA+TGG + tig0017633:3004-3023 Msa1361780:intron 15.0%
!! GAAAAATTGACATATTTATA+GGG - tig0017633:3312-3331 Msa1361780:intergenic 15.0%
!! TAGCTTCTTAAAAAAAAATA+GGG - tig0017633:3372-3391 Msa1361780:intergenic 15.0%
!! TTAGCTTCTTAAAAAAAAAT+AGG - tig0017633:3373-3392 Msa1361780:intergenic 15.0%
!!! TGAAGATTGAAAATTTTATA+AGG - tig0017633:3509-3528 Msa1361780:intergenic 15.0%
!!! AAATTTTCAATCTTCATTTT+TGG + tig0017633:3513-3532 Msa1361780:intron 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG + tig0017633:3822-3841 Msa1361780:intron 15.0%
!! CAAAAAATTGACATATTTAT+AGG + tig0017633:3881-3900 Msa1361780:intron 15.0%
!!! TTTTTAGTCAAAAGAAATAA+GGG - tig0017633:3925-3944 Msa1361780:intergenic 15.0%
!!! ATTTTTAGTCAAAAGAAATA+AGG - tig0017633:3926-3945 Msa1361780:intergenic 15.0%
!!! TACTTAATTTTTAGGAAAAT+GGG - tig0017633:4084-4103 Msa1361780:intergenic 15.0%
!!! AACATTAACCTATTTTTTTT+TGG + tig0017633:4290-4309 Msa1361780:intron 15.0%
!!! TTTTTTTGCCAAAAAAAAAT+AGG - tig0017633:4301-4320 Msa1361780:intergenic 15.0%
!!! TATCAAAGTTATATTTTGTA+GGG + tig0017633:4710-4729 Msa1361780:intron 15.0%
!! TGTTTACTATTTATTTATTC+AGG + tig0017633:6631-6650 Msa1361780:intron 15.0%
!! GTTTACTATTTATTTATTCA+GGG + tig0017633:6632-6651 Msa1361780:intron 15.0%
!! TTTACTATTTATTTATTCAG+GGG + tig0017633:6633-6652 Msa1361780:intron 15.0%
!!! TTACTATTTCGTAAATTTTA+GGG - tig0017633:7057-7076 Msa1361780:intergenic 15.0%
!!! TTTACTATTTCGTAAATTTT+AGG - tig0017633:7058-7077 Msa1361780:intergenic 15.0%
!! ATTAATAAATAATGCCAAAA+AGG - tig0017633:7385-7404 Msa1361780:intergenic 15.0%
!! AATTAAAATAAGATAAAGTG+GGG - tig0017633:7536-7555 Msa1361780:intergenic 15.0%
!! CTAATTAAAATAAGATAAAG+TGG - tig0017633:7538-7557 Msa1361780:intergenic 15.0%
!!! CACTTTATCTTATTTTAATT+AGG + tig0017633:7536-7555 Msa1361780:three_prime_UTR 15.0%
!!! TTCTTCTTATTCTTTGAAAT+GGG + tig0017633:819-838 Msa1361780:exon 20.0%
!! AAAGAATAGAGAAATTAGTT+GGG + tig0017633:923-942 Msa1361780:CDS 20.0%
!! TTAAACAAAAGACTATGAAT+AGG - tig0017633:1507-1526 Msa1361780:intergenic 20.0%
!!! AATTAAAAGTTTTGAGTAAC+CGG + tig0017633:1890-1909 Msa1361780:intron 20.0%
!! ATATGTCTCATTTCAAATTA+GGG - tig0017633:2421-2440 Msa1361780:intergenic 20.0%
!! TATATGTCTCATTTCAAATT+AGG - tig0017633:2422-2441 Msa1361780:intergenic 20.0%
!! TTAAGCTAATAAAAAAAAGG+CGG + tig0017633:2756-2775 Msa1361780:intron 20.0%
!! TTAAGCTAATAAAAAAAAGG+CGG + tig0017633:2756-2775 Msa1361780:intron 20.0%
!!! AAAGAAATAGTGAAGTTTTA+AGG - tig0017633:2958-2977 Msa1361780:intergenic 20.0%
!!! TAAAACTTCACTATTTCTTT+TGG + tig0017633:2958-2977 Msa1361780:intron 20.0%
!! GTCTTCTATTATATACAAAT+TGG - tig0017633:3129-3148 Msa1361780:intergenic 20.0%
!! CGAAAAATTGACATATTTAT+AGG - tig0017633:3313-3332 Msa1361780:intergenic 20.0%
!! AGTTGAAGAAAAATATTAGA+GGG - tig0017633:3343-3362 Msa1361780:intergenic 20.0%
!! AAGTTGAAGAAAAATATTAG+AGG - tig0017633:3344-3363 Msa1361780:intergenic 20.0%
!!! TATGAGTTTACTTTAAAAGA+GGG - tig0017633:3540-3559 Msa1361780:intergenic 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG - tig0017633:3541-3560 Msa1361780:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG + tig0017633:3821-3840 Msa1361780:intron 20.0%
!!! ATAAGGGTTAAATATGTTTT+TGG - tig0017633:3909-3928 Msa1361780:intergenic 20.0%
!!! ACTTAATTTTTAGGAAAATG+GGG - tig0017633:4083-4102 Msa1361780:intergenic 20.0%
!!! GTACTTAATTTTTAGGAAAA+TGG - tig0017633:4085-4104 Msa1361780:intergenic 20.0%
!! ATAGAAATACACATATCAAA+AGG - tig0017633:4233-4252 Msa1361780:intergenic 20.0%
!! AATTTGCATAATAATCATGA+AGG - tig0017633:4324-4343 Msa1361780:intergenic 20.0%
!!! GTATCAAAGTTATATTTTGT+AGG + tig0017633:4709-4728 Msa1361780:intron 20.0%
!! GTTGTATTTAAATATCACAT+TGG + tig0017633:4790-4809 Msa1361780:intron 20.0%
!!! ATCTATATTTTCTCTCATAT+TGG + tig0017633:5040-5059 Msa1361780:CDS 20.0%
!! ATTTGAAAATATCTAACTAG+TGG - tig0017633:5206-5225 Msa1361780:intergenic 20.0%
!! AAAAATCACATTTAACCAAA+TGG - tig0017633:5357-5376 Msa1361780:intergenic 20.0%
!! TTATCAAAAGATCTATTTAG+CGG + tig0017633:5615-5634 Msa1361780:intron 20.0%
!!! AGATCTTTCATTAGTTTTAA+TGG - tig0017633:5645-5664 Msa1361780:intergenic 20.0%
!!! TTGCAATTTTTTAAATTCGA+TGG + tig0017633:5708-5727 Msa1361780:intron 20.0%
!! GATTAGAGATTAGAATATTA+AGG - tig0017633:6174-6193 Msa1361780:intergenic 20.0%
!! TCATAACATGTTGTATAAAT+TGG + tig0017633:6827-6846 Msa1361780:CDS 20.0%
!! CATAACATGTTGTATAAATT+GGG + tig0017633:6828-6847 Msa1361780:CDS 20.0%
!!! CACAATAAATTTGAAATTTG+AGG - tig0017633:6889-6908 Msa1361780:intergenic 20.0%
!! TATATAACTTATAGCCAATT+TGG + tig0017633:6936-6955 Msa1361780:intron 20.0%
!!! AGAGAAAATTTTATCCAAAT+TGG - tig0017633:6953-6972 Msa1361780:intergenic 20.0%
!! TCAATATATAAGTCTTTCTA+TGG - tig0017633:7149-7168 Msa1361780:intergenic 20.0%
!! TAAATTTGAAGGAAAAAAAG+AGG + tig0017633:7226-7245 Msa1361780:intron 20.0%
!! ATTTATTAATCTCAATTGTG+TGG + tig0017633:7395-7414 Msa1361780:intron 20.0%
!!! TTATTTTAATTAGGCAGATA+GGG + tig0017633:7545-7564 Msa1361780:three_prime_UTR 20.0%
! GAAGAAGAAGAAAAAGAATA+CGG - tig0017633:802-821 Msa0542330:intergenic 25.0%
!! CTTCTTCTTATTCTTTGAAA+TGG + tig0017633:818-837 Msa1361780:exon 25.0%
! GAAAGAATAGAGAAATTAGT+TGG + tig0017633:922-941 Msa1361780:CDS 25.0%
!! ATCTTCACAATATCTTTTAC+AGG + tig0017633:1007-1026 Msa1361780:CDS 25.0%
!! AATCTAGTAATTTTTGTCCT+CGG - tig0017633:1167-1186 Msa1361780:intergenic 25.0%
! AGGACAAAAATTACTAGATT+TGG + tig0017633:1167-1186 Msa1361780:intron 25.0%
! TAGTTGATTATACTCCTATT+TGG + tig0017633:1299-1318 Msa1361780:intron 25.0%
!! AATACGGGTACATTTTTATA+AGG + tig0017633:1423-1442 Msa1361780:intron 25.0%
! CTTCTTTAGTCAAAATAACT+TGG - tig0017633:1456-1475 Msa1361780:intergenic 25.0%
! AGCAAATGAAAATTGTGAAT+TGG + tig0017633:1474-1493 Msa1361780:intron 25.0%
! TAATGGTCAAATAATAATGG+CGG - tig0017633:1953-1972 Msa1361780:intergenic 25.0%
! GACCATTAAAAAATGAAGTT+AGG + tig0017633:1965-1984 Msa1361780:intron 25.0%
!!! AGCCTAACTTCATTTTTTAA+TGG - tig0017633:1970-1989 Msa1361780:intergenic 25.0%
! TAAAAAATGAAGTTAGGCTT+AGG + tig0017633:1971-1990 Msa1361780:intron 25.0%
!!! CGGGTATATAATTTTTTGAA+TGG + tig0017633:2163-2182 Msa1361780:intron 25.0%
! GCTTATAGAAATGTTATAAG+TGG + tig0017633:2446-2465 Msa1361780:intron 25.0%
! GTAGATATTAATAAGTGGTA+CGG + tig0017633:2586-2605 Msa1361780:intron 25.0%
! GGATATTGGATATCAATTAA+TGG + tig0017633:2623-2642 Msa1361780:intron 25.0%
! TAAGCTAATAAAAAAAAGGC+GGG + tig0017633:2757-2776 Msa1361780:intron 25.0%
! TAAGCTAATAAAAAAAAGGC+GGG + tig0017633:2757-2776 Msa1361780:intron 25.0%
!! TAGCATCTTGATCAATTTTA+TGG - tig0017633:3168-3187 Msa1361780:intergenic 25.0%
!! AAATTTTCAATCACTACGTT+TGG - tig0017633:3818-3837 Msa1361780:intergenic 25.0%
! TAGTCATCAATTGATTATTG+TGG + tig0017633:3964-3983 Msa1361780:intron 25.0%
! AGTCATCAATTGATTATTGT+GGG + tig0017633:3965-3984 Msa1361780:intron 25.0%
!! AGGTTCAGTACTTAATTTTT+AGG - tig0017633:4092-4111 Msa1361780:intergenic 25.0%
!!! TGAACCTTCATGATATTTTT+TGG + tig0017633:4105-4124 Msa1361780:intron 25.0%
! ATGACCAAAAAATATCATGA+AGG - tig0017633:4112-4131 Msa1361780:intergenic 25.0%
!! TTTTCATAAAGTCATGTCTT+TGG + tig0017633:4444-4463 Msa1361780:intron 25.0%
!!! GTCTTATAAACTAGTTTGTT+TGG + tig0017633:4660-4679 Msa1361780:intron 25.0%
! AACTTTGATACCATGTTAAA+TGG - tig0017633:4700-4719 Msa1361780:intergenic 25.0%
! ATATATACATTGCACAACTT+GGG - tig0017633:4823-4842 Msa1361780:intergenic 25.0%
! AATATATACATTGCACAACT+TGG - tig0017633:4824-4843 Msa1361780:intergenic 25.0%
! AAGTTGTGCAATGTATATAT+TGG + tig0017633:4823-4842 Msa1361780:intron 25.0%
! GCTAAACAATATCAAAGAAT+AGG + tig0017633:5002-5021 Msa1361780:CDS 25.0%
!! TGGTTAAATGTGATTTTTCT+TGG + tig0017633:5359-5378 Msa1361780:CDS 25.0%
!! TTTTTCTTGGATTATACATG+AGG + tig0017633:5372-5391 Msa1361780:CDS 25.0%
! TGAAATAGTTCCATAGAAAT+TGG - tig0017633:5428-5447 Msa1361780:intergenic 25.0%
! ATTTCTATGGAACTATTTCA+AGG + tig0017633:5428-5447 Msa1361780:CDS 25.0%
! ATATACAAGTTTAGTTGAAG+AGG - tig0017633:5514-5533 Msa1361780:intergenic 25.0%
!! ATATTCTTTTACTGCATCAA+TGG + tig0017633:5679-5698 Msa1361780:intron 25.0%
!! TATACAATACCATTTGGAAT+TGG + tig0017633:6108-6127 Msa1361780:CDS 25.0%
! TCTCTGAATATTATAGTACA+AGG + tig0017633:6229-6248 Msa1361780:intron 25.0%
! CTCTGAATATTATAGTACAA+GGG + tig0017633:6230-6249 Msa1361780:intron 25.0%
! TAAAAATGTAGCCATAAACA+TGG - tig0017633:6371-6390 Msa1361780:intergenic 25.0%
!!! CTACATTTTTAGTAGTGATA+CGG + tig0017633:6380-6399 Msa1361780:CDS 25.0%
! AAAGATAATCTGTCAGAATT+AGG + tig0017633:6542-6561 Msa1361780:intron 25.0%
! AAGATAATCTGTCAGAATTA+GGG + tig0017633:6543-6562 Msa1361780:intron 25.0%
!! AATTTGAGGTTTCAAGATAA+AGG - tig0017633:6875-6894 Msa1361780:intergenic 25.0%
!! TGCTTTGATTGACAATTTTA+AGG + tig0017633:6907-6926 Msa1361780:intron 25.0%
! TAAGGAAATATTTCGTTTCA+AGG - tig0017633:7118-7137 Msa1361780:intergenic 25.0%
!! CAATATAACATTTAAAACCG+CGG + tig0017633:7200-7219 Msa1361780:intron 25.0%
! TTATTTATTCGATGATCATG+TGG + tig0017633:7353-7372 Msa1361780:intron 25.0%
!! TTGTTTGATGTTCAATTTTC+TGG + tig0017633:7453-7472 Msa1361780:CDS 25.0%
! ATAGATTGGTATGATAAGAA+AGG + tig0017633:7481-7500 Msa1361780:exon 25.0%
!!! CTTATTTTAATTAGGCAGAT+AGG + tig0017633:7544-7563 Msa1361780:three_prime_UTR 25.0%
! AAAAGAATACGGATTGAGAT+TGG - tig0017633:791-810 Msa0542330:intergenic 30.0%
TTTACACGAAAGAATTGAAG+AGG + tig0017633:949-968 Msa1361780:CDS 30.0%
AGAAAAATAGGCAACCAAAT+AGG - tig0017633:1316-1335 Msa1361780:intergenic 30.0%
CAAGATAGTAGCAGAAAAAT+AGG - tig0017633:1328-1347 Msa1361780:intergenic 30.0%
ATTAAATCTGAACCACACAT+TGG + tig0017633:1593-1612 Msa1361780:intron 30.0%
TTAAATCTGAACCACACATT+GGG + tig0017633:1594-1613 Msa1361780:intron 30.0%
ATCACTGTGAAGTTAAACAA+AGG - tig0017633:1836-1855 Msa1361780:intergenic 30.0%
AAGACTATAACTCATGAAGA+GGG + tig0017633:1915-1934 Msa1361780:intron 30.0%
AAAAGTTCAGTCATGCATTA+AGG + tig0017633:2509-2528 Msa1361780:intron 30.0%
!! TGTTGATAATAATAACCGTG+TGG + tig0017633:2563-2582 Msa1361780:intron 30.0%
!! GTTGATAATAATAACCGTGT+GGG + tig0017633:2564-2583 Msa1361780:intron 30.0%
CTTATTAATATCTACCCACA+CGG - tig0017633:2581-2600 Msa1361780:intergenic 30.0%
TGTGGGTAGATATTAATAAG+TGG + tig0017633:2581-2600 Msa1361780:intron 30.0%
!! ATAATGTGATAGTGGGATAT+TGG + tig0017633:2609-2628 Msa1361780:intron 30.0%
AAAAATTGTTAGTGGCTTAG+TGG + tig0017633:2663-2682 Msa1361780:intron 30.0%
AAATGTTGAGAAGAAGCTAT+TGG + tig0017633:2689-2708 Msa1361780:intron 30.0%
AATAAAAAAAAGGCGGGATT+AGG + tig0017633:2763-2782 Msa1361780:intron 30.0%
ATAAAAAAAAGGCGGGATTA+GGG + tig0017633:2764-2783 Msa1361780:intron 30.0%
AATAAAAAAAAGGCGGGATT+AGG + tig0017633:2763-2782 Msa1361780:intron 30.0%
ATAAAAAAAAGGCGGGATTA+GGG + tig0017633:2764-2783 Msa1361780:intron 30.0%
! AAGCTGAAGGAAAATTTTAG+AGG + tig0017633:3850-3869 Msa1361780:intron 30.0%
! AGCTGAAGGAAAATTTTAGA+GGG + tig0017633:3851-3870 Msa1361780:intron 30.0%
!! TGTTTTATTGTGTCAAGATG+TGG + tig0017633:4007-4026 Msa1361780:intron 30.0%
AATGCAACATTGCTCTATTT+AGG - tig0017633:4169-4188 Msa1361780:intergenic 30.0%
TAAATAGAGCAATGTTGCAT+TGG + tig0017633:4168-4187 Msa1361780:intron 30.0%
TTAAATTGGATACATGTTCC+TGG - tig0017633:4365-4384 Msa1361780:intergenic 30.0%
TAATAGTACACACAAGGTAT+TGG - tig0017633:4509-4528 Msa1361780:intergenic 30.0%
ATGCTTTAATAGTACACACA+AGG - tig0017633:4515-4534 Msa1361780:intergenic 30.0%
! TGATGATGAAGATAACTTAG+TGG - tig0017633:4577-4596 Msa1361780:intergenic 30.0%
AGATCTAAGTCCATTTAACA+TGG + tig0017633:4687-4706 Msa1361780:intron 30.0%
ATCAATGCATTGAGTAACTT+GGG - tig0017633:4914-4933 Msa1361780:intergenic 30.0%
! GTTTACCACTCTCTTTTATT+TGG + tig0017633:5066-5085 Msa1361780:CDS 30.0%
TTGATCCAAATAAAAGAGAG+TGG - tig0017633:5074-5093 Msa1361780:intergenic 30.0%
AAGACAGGATTGAGTAATAT+TGG + tig0017633:5308-5327 Msa1361780:CDS 30.0%
TGGAACTATTTCAAGGAATT+TGG + tig0017633:5435-5454 Msa1361780:CDS 30.0%
GGAACTATTTCAAGGAATTT+GGG + tig0017633:5436-5455 Msa1361780:CDS 30.0%
TTTCTGTTCTCGAAATTAGA+AGG + tig0017633:5558-5577 Msa1361780:intron 30.0%
TTCTGTTCTCGAAATTAGAA+GGG + tig0017633:5559-5578 Msa1361780:intron 30.0%
TTTAGTGCTTGAAATCGTAA+GGG - tig0017633:5777-5796 Msa1361780:intergenic 30.0%
! TTTTAGTGCTTGAAATCGTA+AGG - tig0017633:5778-5797 Msa1361780:intergenic 30.0%
AAACTTCAGTTCTATCAGTT+TGG + tig0017633:5968-5987 Msa1361780:CDS 30.0%
TATTGTATAGAGAGTTGCAA+TGG - tig0017633:6097-6116 Msa1361780:intergenic 30.0%
ACTCTCTATACAATACCATT+TGG + tig0017633:6102-6121 Msa1361780:CDS 30.0%
ACAAGGGTTTCAAATGAATT+AGG + tig0017633:6246-6265 Msa1361780:CDS 30.0%
ATAACAGATATAGAAACCAG+AGG - tig0017633:6435-6454 Msa1361780:intergenic 30.0%
AGATAATCTGTCAGAATTAG+GGG + tig0017633:6544-6563 Msa1361780:intron 30.0%
ATAGGAGTTTATGTGAATCT+AGG + tig0017633:6682-6701 Msa1361780:CDS 30.0%
TATGGAGTAAATCAGCATTT+CGG + tig0017633:6999-7018 Msa1361780:intron 30.0%
CTTTCTATGGATGTTAACTA+AGG - tig0017633:7136-7155 Msa1361780:intergenic 30.0%
TTTACTAATGCAGGCAATTA+AGG + tig0017633:7419-7438 Msa1361780:intron 30.0%
!! ATTTTCTGGAGAGAATAGAT+TGG + tig0017633:7467-7486 Msa1361780:CDS 30.0%
!! AAGAGGATTTGTTACCTATC+AGG + tig0017633:966-985 Msa1361780:CDS 35.0%
TAAGTGACCAACAATCATGA+TGG - tig0017633:1039-1058 Msa1361780:intergenic 35.0%
ATCATGATTGTTGGTCACTT+AGG + tig0017633:1038-1057 Msa1361780:CDS 35.0%
ACTCTCAAAAACTCAGTATC+CGG + tig0017633:1140-1159 Msa1361780:intron 35.0%
TATTGTATTTGTCCCTACGT+GGG + tig0017633:1537-1556 Msa1361780:intron 35.0%
CTTGTGTGACATTAATGTCA+CGG + tig0017633:1566-1585 Msa1361780:intron 35.0%
TTGTCATTGTCATTGCATCT+GGG - tig0017633:1728-1747 Msa1361780:intergenic 35.0%
ATTGTCATTGTCATTGCATC+TGG - tig0017633:1729-1748 Msa1361780:intergenic 35.0%
CTGTGAAGTTAAACAAAGGA+AGG - tig0017633:1832-1851 Msa1361780:intergenic 35.0%
TCATGAGTTATAGTCTTCAC+CGG - tig0017633:1912-1931 Msa1361780:intergenic 35.0%
GAAGACTATAACTCATGAAG+AGG + tig0017633:1914-1933 Msa1361780:intron 35.0%
AAGAGTTGTGTAAACTAGTG+AGG + tig0017633:1994-2013 Msa1361780:intron 35.0%
! ATGCATTAAGGTTAGTGGAT+GGG + tig0017633:2521-2540 Msa1361780:intron 35.0%
!!! AGTTTTAAGGTAGACCATGT+TGG - tig0017633:2945-2964 Msa1361780:intergenic 35.0%
AACGTTAGATACTCCTATTG+CGG + tig0017633:3205-3224 Msa1361780:intron 35.0%
ATTCTCACTGCTGTCAATTT+AGG - tig0017633:3405-3424 Msa1361780:intergenic 35.0%
TTATAGGGACTAAAAGCTGA+AGG + tig0017633:3837-3856 Msa1361780:intron 35.0%
!!! GACTCACCACAACTTTTTTT+GGG - tig0017633:4047-4066 Msa1361780:intergenic 35.0%
TTGCTTAACATGTGCTCTAA+GGG - tig0017633:4146-4165 Msa1361780:intergenic 35.0%
TATCTTAACATGTGCCTTGA+GGG + tig0017633:4259-4278 Msa1361780:intron 35.0%
! TGAGGGTACGATTGTTAAAT+TGG - tig0017633:4379-4398 Msa1361780:intergenic 35.0%
! GAGCGTTTTTGTCTTTTTGA+GGG - tig0017633:4396-4415 Msa1361780:intergenic 35.0%
!! AGAGCGTTTTTGTCTTTTTG+AGG - tig0017633:4397-4416 Msa1361780:intergenic 35.0%
TCAAAAAGACAAAAACGCTC+TGG + tig0017633:4396-4415 Msa1361780:intron 35.0%
!! ACACACAAGGTATTGGAATT+TGG - tig0017633:4502-4521 Msa1361780:intergenic 35.0%
! AGCTTGCTCAAAAATTAGCA+AGG + tig0017633:4614-4633 Msa1361780:intron 35.0%
CAGGCTAATTCATAAGATGA+GGG - tig0017633:4857-4876 Msa1361780:intergenic 35.0%
ACAGGCTAATTCATAAGATG+AGG - tig0017633:4858-4877 Msa1361780:intergenic 35.0%
TCAATGCATTGAGTAACTTG+GGG - tig0017633:4913-4932 Msa1361780:intergenic 35.0%
CATCAATGCATTGAGTAACT+TGG - tig0017633:4915-4934 Msa1361780:intergenic 35.0%
ATTTCACTCATGCTAACAGA+TGG + tig0017633:4935-4954 Msa1361780:intron 35.0%
TTTCACTCATGCTAACAGAT+GGG + tig0017633:4936-4955 Msa1361780:intron 35.0%
!!! GAGAACATACTAGTTTTCAC+AGG + tig0017633:5098-5117 Msa1361780:CDS 35.0%
AAGCAGGAAGATTCACAATT+TGG + tig0017633:5144-5163 Msa1361780:CDS 35.0%
! ATTGCATATGCAAAAAGTGC+TGG - tig0017633:5176-5195 Msa1361780:intergenic 35.0%
! ACACAAGAGCTTAAAAGCAT+TGG - tig0017633:5245-5264 Msa1361780:intergenic 35.0%
TATCCATATACCTCTTTGCT+GGG + tig0017633:5274-5293 Msa1361780:CDS 35.0%
ACAGGATTGAGTAATATTGG+TGG + tig0017633:5311-5330 Msa1361780:CDS 35.0%
TTGCAATGAGCATTTCCATT+TGG + tig0017633:5339-5358 Msa1361780:CDS 35.0%
!! CAGAAACGTTGATTCATTCA+TGG - tig0017633:5544-5563 Msa1361780:intergenic 35.0%
! GCATCTTGTAGAACTCTTTT+GGG - tig0017633:5821-5840 Msa1361780:intergenic 35.0%
! AGCATCTTGTAGAACTCTTT+TGG - tig0017633:5822-5841 Msa1361780:intergenic 35.0%
!! GAAGTTTCAAGTTGTGGATT+AGG - tig0017633:5955-5974 Msa1361780:intergenic 35.0%
!! AGAACTGAAGTTTCAAGTTG+TGG - tig0017633:5961-5980 Msa1361780:intergenic 35.0%
GTTTCAAATGAATTAGGAGC+TGG + tig0017633:6252-6271 Msa1361780:CDS 35.0%
AAATGTAGCCATAAACATGG+CGG - tig0017633:6368-6387 Msa1361780:intergenic 35.0%
TGTTAAATACGTCACTGTCT+TGG + tig0017633:6407-6426 Msa1361780:CDS 35.0%
GGTAAATTGCTCAGTATACA+AGG + tig0017633:6483-6502 Msa1361780:intron 35.0%
!! CTTTGGATTGGTATACAAGT+CGG + tig0017633:6775-6794 Msa1361780:CDS 35.0%
TTGTATAAATTGGGAGCAAC+TGG + tig0017633:6837-6856 Msa1361780:CDS 35.0%
! GTGCTATGTCACATTGATTA+TGG + tig0017633:6981-7000 Msa1361780:intron 35.0%
! TCATGTGGTAGAATCCTTTT+TGG + tig0017633:7368-7387 Msa1361780:intron 35.0%
!! TTGTGTGGTTTTACTAATGC+AGG + tig0017633:7410-7429 Msa1361780:intron 35.0%
ATTGTCGCCGTAACAAATTT+GGG - tig0017633:7512-7531 Msa1361780:intergenic 35.0%
AATTGTCGCCGTAACAAATT+TGG - tig0017633:7513-7532 Msa1361780:intergenic 35.0%
! GGGCATTTTTCTCATGATAA+AGG + tig0017633:7565-7584 Msa1361780:three_prime_UTR 35.0%
TTGTTACCTATCAGGTCCTA+TGG + tig0017633:974-993 Msa1361780:CDS 40.0%
GAAGATGTTACAGCTACCAT+AGG - tig0017633:993-1012 Msa1361780:intergenic 40.0%
GTTGTGTCCATCATGATTGT+TGG + tig0017633:1029-1048 Msa1361780:CDS 40.0%
AGTAAAGGAAATGGCTAAGG+CGG - tig0017633:1084-1103 Msa1361780:intergenic 40.0%
ACCAGTAAAGGAAATGGCTA+AGG - tig0017633:1087-1106 Msa1361780:intergenic 40.0%
!! ATTTCCTTTACTGGTGTCAC+CGG + tig0017633:1092-1111 Msa1361780:CDS 40.0%
TGAGAGTAGTATAGCTTACC+AGG - tig0017633:1127-1146 Msa1361780:intergenic 40.0%
! AGTAATTTTTGTCCTCGGAC+CGG - tig0017633:1162-1181 Msa1361780:intergenic 40.0%
GTATTGTATTTGTCCCTACG+TGG + tig0017633:1536-1555 Msa1361780:intron 40.0%
ATTGTATTTGTCCCTACGTG+GGG + tig0017633:1538-1557 Msa1361780:intron 40.0%
ATCTAATGTCACCCAATGTG+TGG - tig0017633:1608-1627 Msa1361780:intergenic 40.0%
GTGACATTAGATGTGTTGTG+TGG + tig0017633:1616-1635 Msa1361780:intron 40.0%
TTGTCATTGCCATTGCATCT+GGG - tig0017633:1642-1661 Msa1361780:intergenic 40.0%
ATTGTCATTGCCATTGCATC+TGG - tig0017633:1643-1662 Msa1361780:intergenic 40.0%
GCAATGACAATGACAATGTG+TGG + tig0017633:1732-1751 Msa1361780:intron 40.0%
AATGTGTGGCACAAATGCAA+TGG + tig0017633:1746-1765 Msa1361780:intron 40.0%
AAAAGGACTGTCACGTATGT+GGG - tig0017633:1802-1821 Msa1361780:intergenic 40.0%
AAAAAGGACTGTCACGTATG+TGG - tig0017633:1803-1822 Msa1361780:intergenic 40.0%
!!! ACGTGACAGTCCTTTTTTTC+CGG + tig0017633:1806-1825 Msa1361780:intron 40.0%
GAAGTTAAACAAAGGAAGGC+CGG - tig0017633:1828-1847 Msa1361780:intergenic 40.0%
CAGTCATGCATTAAGGTTAG+TGG + tig0017633:2516-2535 Msa1361780:intron 40.0%
CATGCATTAAGGTTAGTGGA+TGG + tig0017633:2520-2539 Msa1361780:intron 40.0%
! TGCATTAAGGTTAGTGGATG+GGG + tig0017633:2522-2541 Msa1361780:intron 40.0%
TGGTACGGATAATGTGATAG+TGG + tig0017633:2601-2620 Msa1361780:intron 40.0%
GGTACGGATAATGTGATAGT+GGG + tig0017633:2602-2621 Msa1361780:intron 40.0%
! TGAGAAGAAGCTATTGGTCT+TGG + tig0017633:2695-2714 Msa1361780:intron 40.0%
!! GAGAAGAAGCTATTGGTCTT+GGG + tig0017633:2696-2715 Msa1361780:intron 40.0%
TAGACCATGTTGGATAACGA+GGG - tig0017633:2935-2954 Msa1361780:intergenic 40.0%
TCACTGCTGTCAATTTAGGT+GGG - tig0017633:3401-3420 Msa1361780:intergenic 40.0%
AGGACTAAAAGAACCCACTT+GGG - tig0017633:3489-3508 Msa1361780:intergenic 40.0%
AAGGACTAAAAGAACCCACT+TGG - tig0017633:3490-3509 Msa1361780:intergenic 40.0%
!!! CAACTTTTTTTGGGCGAATG+TGG - tig0017633:4038-4057 Msa1361780:intergenic 40.0%
CATTCGCCCAAAAAAAGTTG+TGG + tig0017633:4038-4057 Msa1361780:intron 40.0%
!!! GGACTCACCACAACTTTTTT+TGG - tig0017633:4048-4067 Msa1361780:intergenic 40.0%
AAAATGGGGACCACAAAAAG+TGG - tig0017633:4069-4088 Msa1361780:intergenic 40.0%
GTTGCTTAACATGTGCTCTA+AGG - tig0017633:4147-4166 Msa1361780:intergenic 40.0%
GTATCTTAACATGTGCCTTG+AGG + tig0017633:4258-4277 Msa1361780:intron 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG - tig0017633:4276-4295 Msa1361780:intergenic 40.0%
! TCCTTGAAGCACTATAAACC+AGG + tig0017633:4344-4363 Msa1361780:intron 40.0%
TCCTGGTTTATAGTGCTTCA+AGG - tig0017633:4348-4367 Msa1361780:intergenic 40.0%
GTCTAACATACAATCCAGAG+AGG - tig0017633:4477-4496 Msa1361780:intergenic 40.0%
!! CACAAGGTATTGGAATTTGG+AGG - tig0017633:4499-4518 Msa1361780:intergenic 40.0%
TACATGTATCTCACTCTCAC+AGG - tig0017633:4876-4895 Msa1361780:intergenic 40.0%
!! AGTGGACTAGAAACAACATG+TGG + tig0017633:4966-4985 Msa1361780:CDS 40.0%
ACTAGAAACAACATGTGGAC+AGG + tig0017633:4971-4990 Msa1361780:CDS 40.0%
CTGCTTCATGTGCAATTAGA+GGG - tig0017633:5130-5149 Msa1361780:intergenic 40.0%
GTATCCATATACCTCTTTGC+TGG + tig0017633:5273-5292 Msa1361780:CDS 40.0%
! AACTAGAGCGCCAATTTCTA+TGG + tig0017633:5415-5434 Msa1361780:CDS 40.0%
! TTGATGATTGTAGCCTTGAG+TGG + tig0017633:5890-5909 Msa1361780:intron 40.0%
AAGTGACATAGCAGCTAACA+CGG - tig0017633:6301-6320 Msa1361780:intergenic 40.0%
GTTATACTCGACAGCATACA+AGG + tig0017633:6450-6469 Msa1361780:CDS 40.0%
ATTTATTCAGGGGTTGCTAG+AGG + tig0017633:6643-6662 Msa1361780:intron 40.0%
!!! ATTGGCATTTTGGGTTCAAG+TGG + tig0017633:6741-6760 Msa1361780:CDS 40.0%
!!! TTGGCATTTTGGGTTCAAGT+GGG + tig0017633:6742-6761 Msa1361780:CDS 40.0%
TTCCTTCAAATTTAGCACCG+CGG - tig0017633:7220-7239 Msa1361780:intergenic 40.0%
!! GGTCAAGCCCAAATTTGTTA+CGG + tig0017633:7502-7521 Msa1361780:three_prime_UTR 40.0%
GCCTTAGCCATTTCCTTTAC+TGG + tig0017633:1083-1102 Msa1361780:CDS 45.0%
GGTGACACCAGTAAAGGAAA+TGG - tig0017633:1093-1112 Msa1361780:intergenic 45.0%
CACAAGTATTTCCCCACGTA+GGG - tig0017633:1552-1571 Msa1361780:intergenic 45.0%
ACACAAGTATTTCCCCACGT+AGG - tig0017633:1553-1572 Msa1361780:intergenic 45.0%
GCAATGGCAATGACAATGTG+TGG + tig0017633:1646-1665 Msa1361780:intron 45.0%
CAAAGGAAGGCCGGAAAAAA+AGG - tig0017633:1819-1838 Msa1361780:intergenic 45.0%
TTATATACCCGTGCATCGCA+CGG - tig0017633:2154-2173 Msa1361780:intergenic 45.0%
TTGGGTTCGATTCTCAGAAG+AGG + tig0017633:2714-2733 Msa1361780:intron 45.0%
AGACCATGTTGGATAACGAG+GGG - tig0017633:2934-2953 Msa1361780:intergenic 45.0%
GTAGACCATGTTGGATAACG+AGG - tig0017633:2936-2955 Msa1361780:intergenic 45.0%
! TACTCCTATTGCGGATTGTG+TGG + tig0017633:3214-3233 Msa1361780:intron 45.0%
! ACTCCTATTGCGGATTGTGT+GGG + tig0017633:3215-3234 Msa1361780:intron 45.0%
TTGTGTGGGATGTGACTTCA+AGG + tig0017633:3229-3248 Msa1361780:intron 45.0%
CTCACTGCTGTCAATTTAGG+TGG - tig0017633:3402-3421 Msa1361780:intergenic 45.0%
!! GTGGTATTGGCTTGAGACTT+GGG - tig0017633:3458-3477 Msa1361780:intergenic 45.0%
!! AGTGGTATTGGCTTGAGACT+TGG - tig0017633:3459-3478 Msa1361780:intergenic 45.0%
AGTCTCAAGCCAATACCACT+AGG + tig0017633:3459-3478 Msa1361780:intron 45.0%
CTAAAAGAACCCACTTGGGT+TGG - tig0017633:3485-3504 Msa1361780:intergenic 45.0%
!!! TGTGGTGAGTCCACTTTTTG+TGG + tig0017633:4056-4075 Msa1361780:intron 45.0%
! TCTTTGGAGAATGACCTCTC+TGG + tig0017633:4460-4479 Msa1361780:intron 45.0%
! ATCCACATTTTTGCCTAGCG+TGG - tig0017633:4764-4783 Msa1361780:intergenic 45.0%
CTCATGCTAACAGATGGGAA+TGG + tig0017633:4941-4960 Msa1361780:intron 45.0%
TAACAGATGGGAATGGCTAG+TGG + tig0017633:4948-4967 Msa1361780:intron 45.0%
ACAACATGTGGACAGGCTTA+TGG + tig0017633:4978-4997 Msa1361780:CDS 45.0%
CCTGCTTCATGTGCAATTAG+AGG - tig0017633:5131-5150 Msa1361780:intergenic 45.0%
CCTCTAATTGCACATGAAGC+AGG + tig0017633:5128-5147 Msa1361780:CDS 45.0%
! AAGCCCAGCAAAGAGGTATA+TGG - tig0017633:5280-5299 Msa1361780:intergenic 45.0%
TATACCTCTTTGCTGGGCTT+TGG + tig0017633:5280-5299 Msa1361780:CDS 45.0%
AATACCAAAGCCCAGCAAAG+AGG - tig0017633:5287-5306 Msa1361780:intergenic 45.0%
! TGGGCTTTGGTATTCAAGAC+AGG + tig0017633:5293-5312 Msa1361780:CDS 45.0%
TACCTTCTGCTGTGATGGTT+TGG + tig0017633:5477-5496 Msa1361780:CDS 45.0%
TACCAAACCATCACAGCAGA+AGG - tig0017633:5482-5501 Msa1361780:intergenic 45.0%
GTGCTTGAAATCGTAAGGGT+CGG - tig0017633:5773-5792 Msa1361780:intergenic 45.0%
! ATGATTGTAGCCTTGAGTGG+TGG + tig0017633:5893-5912 Msa1361780:intron 45.0%
GAGCTAATTGTCTTGCTCTC+TGG + tig0017633:5922-5941 Msa1361780:CDS 45.0%
TTTGCATGCCGCCATGTTTA+TGG + tig0017633:6357-6376 Msa1361780:CDS 45.0%
TAGGAGCCTTCTACCTATGT+GGG + tig0017633:6701-6720 Msa1361780:CDS 45.0%
AGGAATCCCACATAGGTAGA+AGG - tig0017633:6710-6729 Msa1361780:intergenic 45.0%
!! TTGCTGCTGCATTGGCATTT+TGG + tig0017633:6731-6750 Msa1361780:CDS 45.0%
!! TGCTGCTGCATTGGCATTTT+GGG + tig0017633:6732-6751 Msa1361780:CDS 45.0%
AAGTGGGAGGAAAAGGACTT+TGG + tig0017633:6758-6777 Msa1361780:CDS 45.0%
GGAGGAAAAGGACTTTGGAT+TGG + tig0017633:6763-6782 Msa1361780:CDS 45.0%
! AACCGCGGTGCTAAATTTGA+AGG + tig0017633:7215-7234 Msa1361780:intron 45.0%
AGGCAATTAAGGCTAGACAG+AGG + tig0017633:7430-7449 Msa1361780:intron 45.0%
!!! TTTTATTCTTTATTTTTTTA+TGG - tig0017633:2310-2329 Msa1361780:intergenic 5.0%
!! ATTTATATATATAAAGATAT+GGG + tig0017633:2895-2914 Msa1361780:intron 5.0%
!!! TATTATTTATATTTATTTCT+TGG + tig0017633:3268-3287 Msa1361780:intron 5.0%
!!! ATTATTTATATTTATTTCTT+GGG + tig0017633:3269-3288 Msa1361780:intron 5.0%
!!! AAAAAATTCTAAATTTTTTT+AGG - tig0017633:3625-3644 Msa1361780:intergenic 5.0%
!!! ATGAATTTTTATATTTTTTA+CGG + tig0017633:3664-3683 Msa1361780:intron 5.0%
!!! TAAAAAATTCTATTTTTTTT+TGG + tig0017633:3717-3736 Msa1361780:intron 5.0%
!! ACAAAAATTAAATTAAAAAT+AGG + tig0017633:3790-3809 Msa1361780:intron 5.0%
!! CAAAAATTAAATTAAAAATA+GGG + tig0017633:3791-3810 Msa1361780:intron 5.0%
GGGTGAAGAGAGAAGAGTGA+TGG + tig0017633:839-858 Msa1361780:CDS 50.0%
CAGCTACCATAGGACCTGAT+AGG - tig0017633:983-1002 Msa1361780:intergenic 50.0%
GAAACCGGTGACACCAGTAA+AGG - tig0017633:1099-1118 Msa1361780:intergenic 50.0%
GCTTACCAGGAAGCTGAAAC+CGG - tig0017633:1114-1133 Msa1361780:intergenic 50.0%
AAAACTCAGTATCCGGTCCG+AGG + tig0017633:1147-1166 Msa1361780:intron 50.0%
AATGTGTGGCCCAGATGCAT+TGG + tig0017633:1660-1679 Msa1361780:intron 50.0%
ATTGCATCTGGGCCACACAA+CGG - tig0017633:1631-1650 Msa1361780:intergenic 50.0%
GTGGCACAAATGCAATGGCA+CGG + tig0017633:1751-1770 Msa1361780:intron 50.0%
AACTCATGAAGAGGGCCATG+AGG + tig0017633:1923-1942 Msa1361780:intron 50.0%
AATAATGGCGGCCAACCTCA+TGG - tig0017633:1941-1960 Msa1361780:intergenic 50.0%
ACTATAACCCGTGCGATGCA+CGG + tig0017633:2143-2162 Msa1361780:intron 50.0%
TATATACCCGTGCATCGCAC+GGG - tig0017633:2153-2172 Msa1361780:intergenic 50.0%
! GGTTAGTGGATGGGGTTTAG+TGG + tig0017633:2530-2549 Msa1361780:intron 50.0%
CAGGGTTCGATTCTCAGAAG+AGG + tig0017633:2792-2811 Msa1361780:intron 50.0%
ACCATGTTGGATAACGAGGG+GGG - tig0017633:2932-2951 Msa1361780:intergenic 50.0%
GACCATGTTGGATAACGAGG+GGG - tig0017633:2933-2952 Msa1361780:intergenic 50.0%
CATCCCACACAATCCGCAAT+AGG - tig0017633:3221-3240 Msa1361780:intergenic 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG - tig0017633:3471-3490 Msa1361780:intergenic 50.0%
GTCCACGCTAGGCAAAAATG+TGG + tig0017633:4759-4778 Msa1361780:intron 50.0%
!!! CGCTCTAGTTTTTGCGCATG+AGG - tig0017633:5405-5424 Msa1361780:intergenic 50.0%
CGCTATACCTTCTGCTGTGA+TGG + tig0017633:5472-5491 Msa1361780:CDS 50.0%
GCTCATATGACCACCACTCA+AGG - tig0017633:5906-5925 Msa1361780:intergenic 50.0%
GCTGCAGCACCAATTCCAAA+TGG - tig0017633:6120-6139 Msa1361780:intergenic 50.0%
!! TTGGAATTGGTGCTGCAGCA+AGG + tig0017633:6121-6140 Msa1361780:CDS 50.0%
ACGGCAACACGTGCTTCAAA+TGG - tig0017633:6282-6301 Msa1361780:intergenic 50.0%
AACATGGCGGCATGCAAAGA+GGG - tig0017633:6355-6374 Msa1361780:intergenic 50.0%
AAACATGGCGGCATGCAAAG+AGG - tig0017633:6356-6375 Msa1361780:intergenic 50.0%
CTAGGAGCCTTCTACCTATG+TGG + tig0017633:6700-6719 Msa1361780:CDS 50.0%
CAGCAACAGGAATCCCACAT+AGG - tig0017633:6717-6736 Msa1361780:intergenic 50.0%
GATTCCTGTTGCTGCTGCAT+TGG + tig0017633:6723-6742 Msa1361780:CDS 50.0%
AATGCCAATGCAGCAGCAAC+AGG - tig0017633:6730-6749 Msa1361780:intergenic 50.0%
!!! GCATTTTGGGTTCAAGTGGG+AGG + tig0017633:6745-6764 Msa1361780:CDS 50.0%
TGGGTTCAAGTGGGAGGAAA+AGG + tig0017633:6751-6770 Msa1361780:CDS 50.0%
!! TGTCACCGGTTTCAGCTTCC+TGG + tig0017633:1106-1125 Msa1361780:CDS 55.0%
GTTGTGTGGCCCAGATGCAA+TGG + tig0017633:1630-1649 Msa1361780:intron 55.0%
GTCACCGTGCCAATGCATCT+GGG - tig0017633:1672-1691 Msa1361780:intergenic 55.0%
TGTCACCGTGCCAATGCATC+TGG - tig0017633:1673-1692 Msa1361780:intergenic 55.0%
TTGCATCTGGGCCACACAAC+GGG - tig0017633:1630-1649 Msa1361780:intergenic 55.0%
CACGTATGTGGGTGGCACTT+TGG - tig0017633:1791-1810 Msa1361780:intergenic 55.0%
AGGACTGTCACGTATGTGGG+TGG - tig0017633:1799-1818 Msa1361780:intergenic 55.0%
CATGAAGAGGGCCATGAGGT+TGG + tig0017633:1927-1946 Msa1361780:intron 55.0%
CTATAACCCGTGCGATGCAC+GGG + tig0017633:2144-2163 Msa1361780:intron 55.0%
AGGCGGGATTAGGGTTACTC+AGG + tig0017633:2773-2792 Msa1361780:intron 55.0%
GGCGGGATTAGGGTTACTCA+GGG + tig0017633:2774-2793 Msa1361780:intron 55.0%
AGGCGGGATTAGGGTTACTC+AGG + tig0017633:2773-2792 Msa1361780:intron 55.0%
GGCGGGATTAGGGTTACTCA+GGG + tig0017633:2774-2793 Msa1361780:intron 55.0%
CCATGTTGGATAACGAGGGG+GGG - tig0017633:2931-2950 Msa1361780:intergenic 55.0%
GAATCGAACCTGAGACCTCG+AGG + tig0017633:3421-3440 Msa1361780:intron 55.0%
TACCACTAGGCCAACCCAAG+TGG + tig0017633:3472-3491 Msa1361780:intron 55.0%
ACCACTAGGCCAACCCAAGT+GGG + tig0017633:3473-3492 Msa1361780:intron 55.0%
! AGCATACAAGGCGTTCTCGC+AGG + tig0017633:6462-6481 Msa1361780:CDS 55.0%
TCAGGGGTTGCTAGAGGTTG+TGG + tig0017633:6649-6668 Msa1361780:intron 55.0%
CAGGGGTTGCTAGAGGTTGT+GGG + tig0017633:6650-6669 Msa1361780:intron 55.0%
GGTTGTGGGTGGCAACACAT+AGG + tig0017633:6664-6683 Msa1361780:CDS 55.0%
! GTGGCCCAGATGCATTGGCA+CGG + tig0017633:1665-1684 Msa1361780:intron 60.0%
CCACACAACGGGTGGCACTT+TGG - tig0017633:1705-1724 Msa1361780:intergenic 60.0%
! CCAAAGTGCCACCCGTTGTG+TGG + tig0017633:1702-1721 Msa1361780:intron 60.0%
CCCCCCCTCGTTATCCAACA+TGG + tig0017633:2928-2947 Msa1361780:intron 60.0%
TCGAACCTGAGACCTCGAGG+AGG + tig0017633:3424-3443 Msa1361780:intron 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG - tig0017633:3477-3496 Msa1361780:intergenic 60.0%
CGTCACTGTCTTGGCTCCTC+TGG + tig0017633:6416-6435 Msa1361780:CDS 60.0%
GGGTTGCTAGAGGTTGTGGG+TGG + tig0017633:6653-6672 Msa1361780:CDS 60.0%
CATCTGGGCCACACAACGGG+TGG - tig0017633:1713-1732 Msa1361780:intergenic 65.0%
GTGCTCCTCCTCGAGGTCTC+AGG - tig0017633:3432-3451 Msa1361780:intergenic 65.0%
! TGGGAGTGTGCTCCTCCTCG+AGG - tig0017633:3439-3458 Msa1361780:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0017633 gene 757 7633 757 ID=Msa1361780;Name=Msa1361780
tig0017633 mRNA 757 7633 757 ID=Msa1361780-mRNA-1;Parent=Msa1361780;Name=Msa1361780-mRNA-1;_AED=0.11;_eAED=0.11;_QI=80|1|1|1|1|1|7|139|495
tig0017633 exon 757 1127 757 ID=Msa1361780-mRNA-1:exon:12646;Parent=Msa1361780-mRNA-1
tig0017633 exon 4954 5498 4954 ID=Msa1361780-mRNA-1:exon:12647;Parent=Msa1361780-mRNA-1
tig0017633 exon 5903 5989 5903 ID=Msa1361780-mRNA-1:exon:12648;Parent=Msa1361780-mRNA-1
tig0017633 exon 6086 6142 6086 ID=Msa1361780-mRNA-1:exon:12649;Parent=Msa1361780-mRNA-1
tig0017633 exon 6245 6483 6245 ID=Msa1361780-mRNA-1:exon:12650;Parent=Msa1361780-mRNA-1
tig0017633 exon 6653 6858 6653 ID=Msa1361780-mRNA-1:exon:12651;Parent=Msa1361780-mRNA-1
tig0017633 exon 7432 7633 7432 ID=Msa1361780-mRNA-1:exon:12652;Parent=Msa1361780-mRNA-1
tig0017633 five_prime_UTR 757 836 757 ID=Msa1361780-mRNA-1:five_prime_utr;Parent=Msa1361780-mRNA-1
tig0017633 CDS 837 1127 837 ID=Msa1361780-mRNA-1:cds;Parent=Msa1361780-mRNA-1
tig0017633 CDS 4954 5498 4954 ID=Msa1361780-mRNA-1:cds;Parent=Msa1361780-mRNA-1
tig0017633 CDS 5903 5989 5903 ID=Msa1361780-mRNA-1:cds;Parent=Msa1361780-mRNA-1
tig0017633 CDS 6086 6142 6086 ID=Msa1361780-mRNA-1:cds;Parent=Msa1361780-mRNA-1
tig0017633 CDS 6245 6483 6245 ID=Msa1361780-mRNA-1:cds;Parent=Msa1361780-mRNA-1
tig0017633 CDS 6653 6858 6653 ID=Msa1361780-mRNA-1:cds;Parent=Msa1361780-mRNA-1
tig0017633 CDS 7432 7494 7432 ID=Msa1361780-mRNA-1:cds;Parent=Msa1361780-mRNA-1
tig0017633 three_prime_UTR 7495 7633 7495 ID=Msa1361780-mRNA-1:three_prime_utr;Parent=Msa1361780-mRNA-1
Gene Sequence

>Msa1361780

ATGGGTGAAGAGAGAAGAGTGATGGAAGAGAGTCTCTTATCAAAACAAATTGATTCGAAAGCAGAGAATGACAATGAAGAAGAGAGAAAGAATAGAGAAATTAGTTGGGATATTTACACGAAAGAATTGAAGAGGATTTGTTACCTATCAGGTCCTATGGTAGCTGTAACATCTTCACAATATCTTTTACAGGTTGTGTCCATCATGATTGTTGGTCACTTAGGTGAACTCTATCTCTCTAGTGCCGCCTTAGCCATTTCCTTTACTGGTGTCACCGGTTTCAGCTTCCTGATGGGAATGGCTAGTGGACTAGAAACAACATGTGGACAGGCTTATGGAGCTAAACAATATCAAAGAATAGGAGTACAAACATACACATCTATATTTTCTCTCATATTGGTTTGTTTACCACTCTCTTTTATTTGGATCAACATTGAGAACATACTAGTTTTCACAGGACAAGACCCTCTAATTGCACATGAAGCAGGAAGATTCACAATTTGGCTTCTTCCAGCACTTTTTGCATATGCAATATTGCAACCACTAGTTAGATATTTTCAAATACAAAGCTTGCTTATTCCAATGCTTTTAAGCTCTTGTGTCACTCTTTGTATCCATATACCTCTTTGCTGGGCTTTGGTATTCAAGACAGGATTGAGTAATATTGGTGGTGCAATTGCAATGAGCATTTCCATTTGGTTAAATGTGATTTTTCTTGGATTATACATGAGGTACTCTTCCTCATGCGCAAAAACTAGAGCGCCAATTTCTATGGAACTATTTCAAGGAATTTGGGAGTTTTTTCGCTTCGCTATACCTTCTGCTGTGATGGTTTGCCTTGAGTGGTGGTCATATGAGCTAATTGTCTTGCTCTCTGGACTTTTACCTAATCCACAACTTGAAACTTCAGTTCTATCAGTTTGTCTCAATACCATTGCAACTCTCTATACAATACCATTTGGAATTGGTGCTGCAGCAAGTACAAGGGTTTCAAATGAATTAGGAGCTGGTAATCCATTTGAAGCACGTGTTGCCGTGTTAGCTGCTATGTCACTTGCACTCACTGAAGCAAGTATAGTGAGCGCAACCCTCTTTGCATGCCGCCATGTTTATGGCTACATTTTTAGTAGTGATACGGAAGTTGTTAAATACGTCACTGTCTTGGCTCCTCTGGTTTCTATATCTGTTATACTCGACAGCATACAAGGCGTTCTCGCAGGGGTTGCTAGAGGTTGTGGGTGGCAACACATAGGAGTTTATGTGAATCTAGGAGCCTTCTACCTATGTGGGATTCCTGTTGCTGCTGCATTGGCATTTTGGGTTCAAGTGGGAGGAAAAGGACTTTGGATTGGTATACAAGTCGGTGCTTTTGTTCAATGTATTCTACTTTCTATCATAACATGTTGTATAAATTGGGAGCAACTGGCAATTAAGGCTAGACAGAGGTTGTTTGATGTTCAATTTTCTGGAGAGAATAGATTGGTATGA
Protein sequence

>Msa1361780

MGEERRVMEESLLSKQIDSKAENDNEEERKNREISWDIYTKELKRICYLSGPMVAVTSSQYLLQVVSIMIVGHLGELYLSSAALAISFTGVTGFSFLMGMASGLETTCGQAYGAKQYQRIGVQTYTSIFSLILVCLPLSFIWINIENILVFTGQDPLIAHEAGRFTIWLLPALFAYAILQPLVRYFQIQSLLIPMLLSSCVTLCIHIPLCWALVFKTGLSNIGGAIAMSISIWLNVIFLGLYMRYSSSCAKTRAPISMELFQGIWEFFRFAIPSAVMVCLEWWSYELIVLLSGLLPNPQLETSVLSVCLNTIATLYTIPFGIGAAASTRVSNELGAGNPFEARVAVLAAMSLALTEASIVSATLFACRHVYGYIFSSDTEVVKYVTVLAPLVSISVILDSIQGVLAGVARGCGWQHIGVYVNLGAFYLCGIPVAAALAFWVQVGGKGLWIGIQVGAFVQCILLSIITCCINWEQLAIKARQRLFDVQFSGENRLV*