AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0138960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0138960 MtrunA17_Chr1g0194121 96.700 697 14 2 1 688 307 1003 0.0 1402
Msa0138960 MtrunA17_Chr7g0270541 78.080 698 142 4 1 688 305 1001 0.0 1115
Msa0138960 MtrunA17_Chr2g0302791 49.430 702 327 12 11 687 326 1024 0.0 624
Msa0138960 MtrunA17_Chr1g0162871 32.601 592 360 11 111 687 435 1002 5.71e-85 288
Msa0138960 MtrunA17_Chr2g0286661 26.377 345 219 10 124 443 260 594 3.57e-28 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0138960 AT2G47070.1 61.033 639 189 15 66 688 287 881 0.0 728
Msa0138960 AT2G47070.2 61.033 639 189 15 66 688 158 752 0.0 728
Msa0138960 AT3G60030.1 58.540 685 220 19 23 688 288 927 0.0 707
Msa0138960 AT1G20980.1 32.186 581 353 16 121 687 481 1034 1.10e-76 266
Msa0138960 AT1G76580.1 30.360 583 345 14 123 687 480 1019 5.90e-75 261
Msa0138960 AT1G76580.2 35.909 220 133 4 123 340 480 693 2.66e-32 134
Msa0138960 AT1G76580.3 36.239 218 131 4 123 338 480 691 1.07e-31 132
Msa0138960 AT5G18830.2 27.302 315 194 8 76 366 239 542 6.28e-26 114
Msa0138960 AT5G18830.1 27.302 315 194 8 76 366 239 542 6.75e-26 114
Msa0138960 AT5G18830.3 27.302 315 194 8 76 366 239 542 8.26e-26 114

Find 220 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTTCGTACTGTAATATT+TGG 0.138110 1_3:+72186163 Msa0138960:three_prime_UTR
AATTCTCTTGTTCTCGTAAA+AGG 0.174087 1_3:-72182051 None:intergenic
TGCAGTTCTACAAGAAATTT+TGG 0.179030 1_3:-72185765 None:intergenic
GCAACAATTATAGCAAAATT+TGG 0.200968 1_3:+72183745 Msa0138960:CDS
AAATGTTGTCAATTATTATT+AGG 0.218675 1_3:-72181238 None:intergenic
TTTCCAGTCCCTTCAATATC+TGG 0.226153 1_3:-72184567 None:intergenic
TAATAATAATTGACAACATT+TGG 0.247125 1_3:+72181240 Msa0138960:five_prime_UTR
ATGGGAGCTTATGTTGAAAA+TGG 0.255303 1_3:+72181595 Msa0138960:five_prime_UTR
ACCAACAAGCGCCTTGTCTT+TGG 0.258264 1_3:-72184940 None:intergenic
CACTTATTTATTGCATCATA+TGG 0.285238 1_3:+72181797 Msa0138960:five_prime_UTR
CTGGTTGTGTTTCTTTGTAT+TGG 0.286506 1_3:+72186023 Msa0138960:three_prime_UTR
TTATTATGCTGGCATTAAAT+TGG 0.288432 1_3:+72181519 Msa0138960:five_prime_UTR
TACATATTATTATCCTTCTA+TGG 0.291725 1_3:+72186067 Msa0138960:three_prime_UTR
AGAACGGTTCACATGGCTTA+TGG 0.294581 1_3:+72184707 Msa0138960:CDS
TGGACATTATTATCCTTCTA+TGG 0.295516 1_3:+72186087 Msa0138960:three_prime_UTR
GAAATCCATAGCTTGACTTT+TGG 0.299906 1_3:-72184598 None:intergenic
GAAACATGCGTATTCTAAAA+AGG 0.302310 1_3:-72181655 None:intergenic
ATGTTAAAACTCAATTTGTT+AGG 0.315790 1_3:+72186140 Msa0138960:three_prime_UTR
CTGGCCTCTAAAGAAGGATA+TGG 0.315918 1_3:+72181558 Msa0138960:five_prime_UTR
AAACTAAATGACCGAGGTTT+AGG 0.318812 1_3:+72185999 Msa0138960:three_prime_UTR
TATGGATTTCATTCATGAAA+TGG 0.320879 1_3:+72184611 Msa0138960:CDS
TCGGGAGAGGGTTGAAAGAT+TGG 0.324458 1_3:-72181324 None:intergenic
TTTATTCTCCAATGGTTCTC+AGG 0.328039 1_3:+72182120 Msa0138960:CDS
TTTGATGAAACTGTTAATAA+AGG 0.328176 1_3:+72184786 Msa0138960:CDS
ACAGAAGCCAATTGAAATAT+AGG 0.336809 1_3:+72184646 Msa0138960:CDS
ACCTTGTGGCAGGGCGCATC+AGG 0.339254 1_3:-72183830 None:intergenic
CCAACAAGCGCCTTGTCTTT+GGG 0.348507 1_3:-72184939 None:intergenic
CATATGGCAATAATGACATT+TGG 0.356025 1_3:+72181813 Msa0138960:five_prime_UTR
CTCGGCCTGACGCAGATAAA+TGG 0.364403 1_3:-72183356 None:intergenic
ATCTATTAACTCATCTTCTA+AGG 0.366559 1_3:+72181981 Msa0138960:five_prime_UTR
AGCCATGTGAACCGTTCTAA+TGG 0.369029 1_3:-72184702 None:intergenic
AATAATAATTGACAACATTT+GGG 0.370441 1_3:+72181241 Msa0138960:five_prime_UTR
CAGACCTGCAATGCTCTCTA+TGG 0.376267 1_3:+72185808 Msa0138960:CDS
ATTGCTCTCTGTCGTATTGA+TGG 0.383082 1_3:-72185651 None:intergenic
TAACCATCCTATATTTCAAT+TGG 0.385181 1_3:-72184653 None:intergenic
CTAAGTGAATGTAAGTATAA+TGG 0.386411 1_3:-72185574 None:intergenic
TTTGATGCCGGTACAGCAAT+TGG 0.388018 1_3:-72183777 None:intergenic
TTCCAGTTTGATTAAGCTGC+TGG 0.388701 1_3:+72183514 Msa0138960:CDS
AGGTTAATGTGTGCTTTAGA+AGG 0.390854 1_3:+72184007 Msa0138960:intron
CGGAACATGTATAGAACTTC+GGG 0.394622 1_3:-72185881 None:intergenic
TGCTTGTATATATGACAATT+AGG 0.396970 1_3:+72181391 Msa0138960:five_prime_UTR
ACCTTTCAGATGGGAATCAT+TGG 0.397557 1_3:+72185904 Msa0138960:CDS
GCTTCTCCGCTAGAACTAGA+AGG 0.400011 1_3:-72182508 None:intergenic
AGTACAAGAGGAAATTCATT+TGG 0.402660 1_3:-72183163 None:intergenic
CAGGTACAGAACATGAAAAT+TGG 0.403924 1_3:-72184105 None:intergenic
ATCCAGCAGCTTAATCAAAC+TGG 0.406521 1_3:-72183516 None:intergenic
GCCACCATAGAGAGCATTGC+AGG 0.412655 1_3:-72185812 None:intergenic
GAATCAAATGCAACAAGAAA+TGG 0.413695 1_3:+72182183 Msa0138960:CDS
ATGTCTCAGATGATACGTTT+TGG 0.415679 1_3:+72183537 Msa0138960:CDS
CTCTTGCTTCCGAGTAAGCC+GGG 0.419245 1_3:-72182279 None:intergenic
TGCTTTAGAAGGAAAATATC+TGG 0.420117 1_3:+72184018 Msa0138960:CDS
ATATGGCAATAATGACATTT+GGG 0.420324 1_3:+72181814 Msa0138960:five_prime_UTR
TCATTCACTAGCTTAGAGAT+TGG 0.421089 1_3:+72185695 Msa0138960:CDS
ATGGATTTCATTCATGAAAT+GGG 0.424476 1_3:+72184612 Msa0138960:CDS
CAAGAGAATTTGTTGAGAGA+AGG 0.430841 1_3:+72182064 Msa0138960:five_prime_UTR
CGGGAGAGGGTTGAAAGATT+GGG 0.430945 1_3:-72181323 None:intergenic
TTTGACCATTTATCTGCGTC+AGG 0.436128 1_3:+72183351 Msa0138960:CDS
AGGATAATAATGTCCATAGA+AGG 0.436231 1_3:-72186080 None:intergenic
CCTGATGCTGTTGGTCCTGC+CGG 0.436534 1_3:+72184990 Msa0138960:CDS
AAGAGAATTTGTTGAGAGAA+GGG 0.437952 1_3:+72182065 Msa0138960:five_prime_UTR
AGATGGTTCCGAGGATGTAC+TGG 0.438143 1_3:+72185043 Msa0138960:CDS
CGCTAGAACTAGAAGGGGAC+TGG 0.439772 1_3:-72182501 None:intergenic
AAAACTTGATAGGTCATGTA+TGG 0.442282 1_3:+72185966 Msa0138960:three_prime_UTR
TGTACAAGTATGTCCATAGA+AGG 0.446724 1_3:-72186100 None:intergenic
CCCAAAGACAAGGCGCTTGT+TGG 0.448364 1_3:+72184939 Msa0138960:CDS
TCAATTGGCAGATTCTAGAT+TGG 0.452129 1_3:+72183275 Msa0138960:intron
CACTATTGGAAACGTGCTAC+CGG 0.452612 1_3:+72181177 Msa0138960:five_prime_UTR
AGATGGGAATCATTGGAGTT+CGG 0.452671 1_3:+72185911 Msa0138960:CDS
TGGCCTCTAAAGAAGGATAT+GGG 0.453051 1_3:+72181559 Msa0138960:five_prime_UTR
TCTGAATTTCCACTTGTTTG+AGG 0.453259 1_3:-72182466 None:intergenic
CATTTATCTGCGTCAGGCCG+AGG 0.455554 1_3:+72183357 Msa0138960:CDS
GTCAGATCAGCCTACAGATC+AGG 0.456789 1_3:+72181958 Msa0138960:five_prime_UTR
TTATTCTCCAATGGTTCTCA+GGG 0.464671 1_3:+72182121 Msa0138960:CDS
TTAAATTAATTATAGCTGAC+AGG 0.464842 1_3:+72181936 Msa0138960:five_prime_UTR
TTGCTCTCTGTCGTATTGAT+GGG 0.466728 1_3:-72185650 None:intergenic
AGGATGGTTAACTTGAACTC+TGG 0.466960 1_3:+72184666 Msa0138960:CDS
AAGACACAAAGGAACTTTGA+TGG 0.470138 1_3:+72181417 Msa0138960:five_prime_UTR
TCTCTTGCTTCCGAGTAAGC+CGG 0.470159 1_3:-72182280 None:intergenic
TGGTCTGAGAAATCAACAAC+TGG 0.470634 1_3:+72181539 Msa0138960:five_prime_UTR
CCGGCAGGACCAACAGCATC+AGG 0.471054 1_3:-72184990 None:intergenic
TGCAACTAATAAAACTTGAT+AGG 0.471234 1_3:+72185956 Msa0138960:three_prime_UTR
TTGATTACAGGTGGGAATTG+AGG 0.477112 1_3:+72185490 Msa0138960:intron
TCCTCTTGTACTTAGAGCAC+AGG 0.478174 1_3:+72183174 Msa0138960:CDS
AACAGAGATTACCTTGTGGC+AGG 0.479919 1_3:-72183840 None:intergenic
TGCGTCAGGCCGAGGCTGTG+TGG 0.480436 1_3:+72183365 Msa0138960:CDS
AACTGCAGTAGGAAGGTCTA+TGG 0.480847 1_3:+72185781 Msa0138960:CDS
TCCTCTTCTGCCACTATGAA+AGG 0.481801 1_3:-72184489 None:intergenic
CATATAGCAGCGGGAAAAGA+TGG 0.484670 1_3:+72185026 Msa0138960:CDS
TATCAGAGTGCAACATCAAA+TGG 0.485125 1_3:+72183577 Msa0138960:CDS
AAAGACAAGGCGCTTGTTGG+TGG 0.485410 1_3:+72184942 Msa0138960:CDS
CAAGCTTATGATTTATGAGA+CGG 0.488665 1_3:+72181753 Msa0138960:five_prime_UTR
CAACAACTGGCCTCTAAAGA+AGG 0.489674 1_3:+72181552 Msa0138960:five_prime_UTR
CTAGCTCTGTTGACTACCCT+TGG 0.491004 1_3:+72182413 Msa0138960:CDS
TGTTAGTCCAATTGCTGTAC+CGG 0.498218 1_3:+72183770 Msa0138960:CDS
CACAAAGTTTACAGTTCCCT+CGG 0.498820 1_3:-72185739 None:intergenic
GAAAGTGCTTGATACAATGT+AGG 0.501114 1_3:-72184816 None:intergenic
GATTTGCTAGATTGAGGACC+AGG 0.501170 1_3:+72184446 Msa0138960:intron
GTATCAGCTTTATTCTCCAA+TGG 0.501723 1_3:+72182112 Msa0138960:CDS
ATCGAGAGTCTAAGCAAGAT+CGG 0.506015 1_3:-72181343 None:intergenic
TGGAGACCCCTGAGAACCAT+TGG 0.509467 1_3:-72182128 None:intergenic
TAACAGTTTCATCAAAGAGT+AGG 0.509576 1_3:-72184779 None:intergenic
TCCTTTCATAGTGGCAGAAG+AGG 0.510150 1_3:+72184488 Msa0138960:CDS
TATCAAGCACTTTCAGAGAT+GGG 0.511356 1_3:+72184825 Msa0138960:CDS
CTCAATATCAGTAGGACTGT+GGG 0.513581 1_3:-72183302 None:intergenic
AGTTCATCAGATGTATTGTC+AGG 0.517811 1_3:-72184912 None:intergenic
GCGTCAGGCCGAGGCTGTGT+GGG 0.518427 1_3:+72183366 Msa0138960:CDS
TAAAGCCAAAAGTCAAGCTA+TGG 0.519399 1_3:+72184593 Msa0138960:CDS
TATATGAAGTGGTGTCAAAC+CGG 0.519627 1_3:-72185009 None:intergenic
TCACCACTGCACACCAATCA+TGG 0.519744 1_3:-72184743 None:intergenic
TAGTTCTAGCGGAGAAGCCC+AGG 0.520957 1_3:+72182513 Msa0138960:CDS
GAAACTGATCCAGATATTGA+AGG 0.522834 1_3:+72184558 Msa0138960:CDS
TTGGAGTTCGGAACAAGCTA+AGG 0.522976 1_3:+72185923 Msa0138960:CDS
GTATCAAGCACTTTCAGAGA+TGG 0.523556 1_3:+72184824 Msa0138960:CDS
TCGAGAGTCTAAGCAAGATC+GGG 0.523705 1_3:-72181342 None:intergenic
TCGGAACATGTATAGAACTT+CGG 0.525195 1_3:-72185882 None:intergenic
AAGAATGCCCGTGACAGTAC+AGG 0.527708 1_3:+72185518 Msa0138960:CDS
AGAGAATTTGTTGAGAGAAG+GGG 0.527845 1_3:+72182066 Msa0138960:five_prime_UTR
GTTTCACTTGATTCTAGTAG+AGG 0.528154 1_3:-72184540 None:intergenic
ATTTCTTGTAGAACTGCAGT+AGG 0.528560 1_3:+72185770 Msa0138960:CDS
GTGTGGAGCCTGTACTGTCA+CGG 0.530352 1_3:-72185526 None:intergenic
ACATGTTCCGACCTTTCAGA+TGG 0.530501 1_3:+72185894 Msa0138960:CDS
AGTCTAAGCAAGATCGGGAG+AGG 0.530855 1_3:-72181337 None:intergenic
TGATGTTGTGTTATAACAGT+TGG 0.532386 1_3:-72182148 None:intergenic
ACCTGTGCTCTAAGTACAAG+AGG 0.533970 1_3:-72183175 None:intergenic
ATTTCATTCATGAAATGGGC+TGG 0.535051 1_3:+72184616 Msa0138960:CDS
TTTCCCGCTGCTATATGAAG+TGG 0.537198 1_3:-72185020 None:intergenic
GATCCAGATATTGAAGGGAC+TGG 0.538378 1_3:+72184564 Msa0138960:CDS
AGACACAAAGGAACTTTGAT+GGG 0.539430 1_3:+72181418 Msa0138960:five_prime_UTR
TGTTCTGTACCTGTGACAAA+TGG 0.539622 1_3:+72184115 Msa0138960:CDS
TAGATCTCTTTCCATTAGAA+CGG 0.540024 1_3:+72184691 Msa0138960:intron
CTATGGACATACTTGTACAA+TGG 0.540144 1_3:+72186104 Msa0138960:three_prime_UTR
GGGGTTCTTCAAGAAATTCA+GGG 0.541114 1_3:+72182086 Msa0138960:five_prime_UTR
GAATTTCCACTTGTTTGAGG+TGG 0.542056 1_3:-72182463 None:intergenic
TTGTTTAGACCTGATGCTGT+TGG 0.542526 1_3:+72184981 Msa0138960:CDS
CGTAATCGCGCATAATCCTC+AGG 0.544188 1_3:-72185548 None:intergenic
ATATATGTTGACTCAGATGA+TGG 0.545000 1_3:+72182346 Msa0138960:CDS
GTAGCAAGATTTGTAGAGAC+GGG 0.551066 1_3:-72182391 None:intergenic
CTTCTCCGCTAGAACTAGAA+GGG 0.552259 1_3:-72182507 None:intergenic
AATCCTCTTCCATTTGTCAC+AGG 0.553594 1_3:-72184124 None:intergenic
ACACCACTTCATATAGCAGC+GGG 0.553941 1_3:+72185017 Msa0138960:CDS
AATTGAGCTCTCTTTGATGC+CGG 0.556172 1_3:-72183789 None:intergenic
GTTAATAGATCCTGATCTGT+AGG 0.556745 1_3:-72181968 None:intergenic
AGTAGCAAGATTTGTAGAGA+CGG 0.559291 1_3:-72182392 None:intergenic
CTGAAGTTCATCAAGCTCCT+CGG 0.559955 1_3:-72184077 None:intergenic
ACCTGATGCGCCCTGCCACA+AGG 0.562538 1_3:+72183829 Msa0138960:CDS
TATTTGGATATAATATTCAG+TGG 0.564159 1_3:+72186179 Msa0138960:three_prime_UTR
CTTGTAGAACTGCAGTAGGA+AGG 0.568836 1_3:+72185774 Msa0138960:CDS
CAGCTTCTTTCCTTTCATAG+TGG 0.569410 1_3:+72184479 Msa0138960:CDS
TTCCATTAGAACGGTTCACA+TGG 0.572870 1_3:+72184700 Msa0138960:CDS
TGAAGTGGTGTCAAACCGGC+AGG 0.572947 1_3:-72185005 None:intergenic
CAGCATTTCAAACAGTCCCC+CGG 0.574192 1_3:+72182261 Msa0138960:CDS
GAGAATTTGTTGAGAGAAGG+GGG 0.576069 1_3:+72182067 Msa0138960:five_prime_UTR
TCAGGCCGAGGCTGTGTGGG+AGG 0.577431 1_3:+72183369 Msa0138960:CDS
TGTGGAGCCTGTACTGTCAC+GGG 0.578816 1_3:-72185525 None:intergenic
AGAAGCTGCTACTCAAACCC+TGG 0.580967 1_3:-72184464 None:intergenic
ATGTAGCTCTCAATATCAGT+AGG 0.583286 1_3:-72183310 None:intergenic
CTATAATTGTTGCTTCGGAA+AGG 0.584009 1_3:-72183735 None:intergenic
TCTTGCTTCCGAGTAAGCCG+GGG 0.584021 1_3:-72182278 None:intergenic
TCAAGTCCACCTCAAACAAG+TGG 0.586688 1_3:+72182457 Msa0138960:CDS
ACAGAGATTACCTTGTGGCA+GGG 0.588689 1_3:-72183839 None:intergenic
CAGAGCATCCAGTACATCCT+CGG 0.589070 1_3:-72185051 None:intergenic
GGCCTCTAAAGAAGGATATG+GGG 0.590145 1_3:+72181560 Msa0138960:five_prime_UTR
ACTATTGGAAACGTGCTACC+GGG 0.591538 1_3:+72181178 Msa0138960:five_prime_UTR
ACAAACACAGACCGCTGCTA+TGG 0.592403 1_3:-72185834 None:intergenic
CTCTATGGTGGCCATAGCAG+CGG 0.592561 1_3:+72185823 Msa0138960:CDS
GTACCTGTGACAAATGGAAG+AGG 0.592712 1_3:+72184121 Msa0138960:CDS
ATGATTCCCATCTGAAAGGT+CGG 0.593018 1_3:-72185901 None:intergenic
TCTATGTTATGAGTTTGCTG+AGG 0.594649 1_3:+72181888 Msa0138960:five_prime_UTR
AGATATGAGTTGATGATCAG+AGG 0.595345 1_3:-72182227 None:intergenic
AAGCCAATTGAAATATAGGA+TGG 0.596851 1_3:+72184650 Msa0138960:CDS
GTCTAAGCAAGATCGGGAGA+GGG 0.598415 1_3:-72181336 None:intergenic
TCCAATGATTCCCATCTGAA+AGG 0.600424 1_3:-72185905 None:intergenic
GCTAGAACTAGAAGGGGACT+GGG 0.602647 1_3:-72182500 None:intergenic
TGAGAATCTTGTTGTGTCCA+AGG 0.603103 1_3:-72182430 None:intergenic
ATTGAGAGCTACATACGCCC+TGG 0.604603 1_3:+72183319 Msa0138960:CDS
AAATGGAAGAGGATTTATTG+AGG 0.605184 1_3:+72184132 Msa0138960:CDS
CATGTTCCGACCTTTCAGAT+GGG 0.605353 1_3:+72185895 Msa0138960:CDS
AACACAAGGAGCAGCTCATG+TGG 0.607987 1_3:+72185616 Msa0138960:CDS
TTCTTCAAGAAATTCAGGGA+TGG 0.609933 1_3:+72182090 Msa0138960:exon
AAACTGATCCAGATATTGAA+GGG 0.611495 1_3:+72184559 Msa0138960:CDS
CAGTCCCCTTCTAGTTCTAG+CGG 0.612309 1_3:+72182502 Msa0138960:CDS
TACTTCCTCCCACACAGCCT+CGG 0.612916 1_3:-72183374 None:intergenic
TGAAGATGCTCATGAGTCAA+CGG 0.614117 1_3:+72184045 Msa0138960:CDS
GAGGATTATGCGCGATTACG+TGG 0.614195 1_3:+72185551 Msa0138960:CDS
GACAATACATCTGATGAACT+AGG 0.621300 1_3:+72184915 Msa0138960:CDS
TACAGGTGGGAATTGAGGCA+TGG 0.622502 1_3:+72185495 Msa0138960:intron
GCCTCTAAAGAAGGATATGG+GGG 0.624440 1_3:+72181561 Msa0138960:five_prime_UTR
ATAACATAGATAGCAATCAA+AGG 0.624878 1_3:-72181875 None:intergenic
TCTCAATATCAGTAGGACTG+TGG 0.625316 1_3:-72183303 None:intergenic
GCAAGTCAGAATGATGAACA+AGG 0.626908 1_3:+72182010 Msa0138960:five_prime_UTR
ACCTGCAATGCTCTCTATGG+TGG 0.630335 1_3:+72185811 Msa0138960:CDS
GCTGAAGTAAGACGTAGCCG+AGG 0.633383 1_3:+72185722 Msa0138960:CDS
ATGGTCAAAACAATACAACC+AGG 0.638951 1_3:-72183337 None:intergenic
GACACCACTTCATATAGCAG+CGG 0.639223 1_3:+72185016 Msa0138960:CDS
TGTTGACTCAGATGATGGAA+CGG 0.641750 1_3:+72182351 Msa0138960:CDS
TCTGACTAATGATCCTTGCA+TGG 0.643398 1_3:+72185070 Msa0138960:CDS
AAATGACCGAGGTTTAGGAC+TGG 0.645870 1_3:+72186004 Msa0138960:three_prime_UTR
TATTCTCCAATGGTTCTCAG+GGG 0.647451 1_3:+72182122 Msa0138960:CDS
TTCTCCGCTAGAACTAGAAG+GGG 0.647976 1_3:-72182506 None:intergenic
TCGCGCATAATCCTCAGGTG+TGG 0.653531 1_3:-72185543 None:intergenic
AGCAGCGGTCTGTGTTTGTG+TGG 0.653598 1_3:+72185838 Msa0138960:CDS
CTAGTAGAGGTTCAAGCACG+CGG 0.656034 1_3:-72184527 None:intergenic
ATTTGCTAGATTGAGGACCA+GGG 0.658771 1_3:+72184447 Msa0138960:intron
AAAGTGCTTGATACAATGTA+GGG 0.660121 1_3:-72184815 None:intergenic
ATCCAAATATTACAGTACGA+AGG 0.662139 1_3:-72186165 None:intergenic
CTGAAGTAAGACGTAGCCGA+GGG 0.663241 1_3:+72185723 Msa0138960:CDS
TGAACTAGGACCCAAAGACA+AGG 0.663671 1_3:+72184929 Msa0138960:CDS
AGCGGGAAAAGATGGTTCCG+AGG 0.663787 1_3:+72185034 Msa0138960:CDS
CAGTACAGGCTCCACACCTG+AGG 0.669316 1_3:+72185532 Msa0138960:CDS
ACAAGGAGCAGCTCATGTGG+TGG 0.675515 1_3:+72185619 Msa0138960:CDS
GAGAATCTTGTTGTGTCCAA+GGG 0.677067 1_3:-72182429 None:intergenic
GTTCATAAACTAAATGACCG+AGG 0.680511 1_3:+72185993 Msa0138960:three_prime_UTR
CAAGTCAGAATGATGAACAA+GGG 0.681362 1_3:+72182011 Msa0138960:five_prime_UTR
ACACAACCAGTCCTAAACCT+CGG 0.686659 1_3:-72186010 None:intergenic
TGGTCAAAACAATACAACCA+GGG 0.689970 1_3:-72183336 None:intergenic
GGACCATGATTGGTGTGCAG+TGG 0.690358 1_3:+72184740 Msa0138960:CDS
CTTGCTTCCGAGTAAGCCGG+GGG 0.690508 1_3:-72182277 None:intergenic
TCGGAAGCAAGAGATAGCAG+TGG 0.695304 1_3:+72182289 Msa0138960:CDS
CAATTAGGCATAAGACACAA+AGG 0.702310 1_3:+72181406 Msa0138960:five_prime_UTR
GTCAACGGATCAATACTCCG+AGG 0.781576 1_3:+72184060 Msa0138960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAACTGTTAAATAA+CGG - chr1_3:72183085-72183104 None:intergenic 10.0%
!! AAATGTTGTCAATTATTATT+AGG - chr1_3:72181241-72181260 None:intergenic 15.0%
!! TAATAATAATTGACAACATT+TGG + chr1_3:72181240-72181259 Msa0138960:five_prime_UTR 15.0%
!! AATAATAATTGACAACATTT+GGG + chr1_3:72181241-72181260 Msa0138960:five_prime_UTR 15.0%
!! AAATAATCACCAATAATTAT+TGG - chr1_3:72182989-72183008 None:intergenic 15.0%
!!! AACATATGTATTTTTTTTGT+GGG + chr1_3:72183950-72183969 Msa0138960:intron 15.0%
!! AAAAAAATTAACAAAACACA+AGG + chr1_3:72185602-72185621 Msa0138960:CDS 15.0%
!!! ACGGATTATTTTTATAACAA+CGG + chr1_3:72181772-72181791 Msa0138960:five_prime_UTR 20.0%
!! TTAAATTAATTATAGCTGAC+AGG + chr1_3:72181936-72181955 Msa0138960:five_prime_UTR 20.0%
!! AGTCAAATAATCTTAATCAT+GGG - chr1_3:72182629-72182648 None:intergenic 20.0%
!! AAGTCAAATAATCTTAATCA+TGG - chr1_3:72182630-72182649 None:intergenic 20.0%
!!! AGATTATTTGACTTCATTTA+TGG + chr1_3:72182636-72182655 Msa0138960:intron 20.0%
!!! CCTATTTCATTTTACTATTT+TGG - chr1_3:72182937-72182956 None:intergenic 20.0%
!! CCAAAATAGTAAAATGAAAT+AGG + chr1_3:72182934-72182953 Msa0138960:intron 20.0%
!! CAGAATAAACCAATAATTAT+TGG + chr1_3:72182977-72182996 Msa0138960:intron 20.0%
!! AACTATCAACCTTTATATAA+TGG + chr1_3:72183413-72183432 Msa0138960:intron 20.0%
!!! CTTTCTTACTACTTTTTTTA+TGG + chr1_3:72183681-72183700 Msa0138960:intron 20.0%
!!! GAACATATGTATTTTTTTTG+TGG + chr1_3:72183949-72183968 Msa0138960:intron 20.0%
!! TGTAGCATAAAAGTAAAAAT+CGG - chr1_3:72184261-72184280 None:intergenic 20.0%
!! TTTGATGAAACTGTTAATAA+AGG + chr1_3:72184786-72184805 Msa0138960:CDS 20.0%
!!! ATCGACTTCTTATAATATTT+TGG + chr1_3:72185130-72185149 Msa0138960:intron 20.0%
!!! TTTATTTTGAGTCATCATAT+CGG + chr1_3:72185198-72185217 Msa0138960:intron 20.0%
!!! GAATTGCTCATAAATTTTAT+TGG + chr1_3:72185274-72185293 Msa0138960:intron 20.0%
!! TACATATTATTATCCTTCTA+TGG + chr1_3:72186067-72186086 Msa0138960:three_prime_UTR 20.0%
!!! ATGTTAAAACTCAATTTGTT+AGG + chr1_3:72186140-72186159 Msa0138960:three_prime_UTR 20.0%
!! TATTTGGATATAATATTCAG+TGG + chr1_3:72186179-72186198 Msa0138960:three_prime_UTR 20.0%
! TGCTTGTATATATGACAATT+AGG + chr1_3:72181391-72181410 Msa0138960:five_prime_UTR 25.0%
!! TCTTCATCTTTTTATTATGC+TGG + chr1_3:72181508-72181527 Msa0138960:five_prime_UTR 25.0%
! TTATTATGCTGGCATTAAAT+TGG + chr1_3:72181519-72181538 Msa0138960:five_prime_UTR 25.0%
!!! CGGATTATTTTTATAACAAC+GGG + chr1_3:72181773-72181792 Msa0138960:five_prime_UTR 25.0%
!!! GGATTATTTTTATAACAACG+GGG + chr1_3:72181774-72181793 Msa0138960:five_prime_UTR 25.0%
! CACTTATTTATTGCATCATA+TGG + chr1_3:72181797-72181816 Msa0138960:five_prime_UTR 25.0%
! ATATGGCAATAATGACATTT+GGG + chr1_3:72181814-72181833 Msa0138960:five_prime_UTR 25.0%
! ATAACATAGATAGCAATCAA+AGG - chr1_3:72181878-72181897 None:intergenic 25.0%
! ATCTATTAACTCATCTTCTA+AGG + chr1_3:72181981-72182000 Msa0138960:five_prime_UTR 25.0%
!!! TTTGCTGTACTATTTTGAAT+TGG + chr1_3:72182544-72182563 Msa0138960:intron 25.0%
! GTCAAATAATCTTAATCATG+GGG - chr1_3:72182628-72182647 None:intergenic 25.0%
! GAGTTTGATCAAACATTAAA+CGG - chr1_3:72182904-72182923 None:intergenic 25.0%
!!! TTTCATTTTACTATTTTGGC+AGG - chr1_3:72182933-72182952 None:intergenic 25.0%
! GTAAAATGAAATAGGATCTT+TGG + chr1_3:72182942-72182961 Msa0138960:intron 25.0%
! CGAAGAGTTTAAAAACAATT+CGG - chr1_3:72183135-72183154 None:intergenic 25.0%
!!! CGAATTGTTTTTAAACTCTT+CGG + chr1_3:72183133-72183152 Msa0138960:CDS 25.0%
!! TTTGAAATTTAATCACATCG+AGG + chr1_3:72183249-72183268 Msa0138960:intron 25.0%
! TTGAAATTTAATCACATCGA+GGG + chr1_3:72183250-72183269 Msa0138960:intron 25.0%
!!! TAAAGGTTGATAGTTTTAGA+AGG - chr1_3:72183408-72183427 None:intergenic 25.0%
! TATCAACCTTTATATAATGG+CGG + chr1_3:72183416-72183435 Msa0138960:intron 25.0%
! AAATAACCGCCATTATATAA+AGG - chr1_3:72183425-72183444 None:intergenic 25.0%
!!! TTTTGCTATAATTGTTGCTT+CGG - chr1_3:72183743-72183762 None:intergenic 25.0%
! GCAACAATTATAGCAAAATT+TGG + chr1_3:72183745-72183764 Msa0138960:CDS 25.0%
!!! TGCAAATTTTTTAAGTGACT+TGG + chr1_3:72183908-72183927 Msa0138960:intron 25.0%
! TAAACAGAAAAAAGTAGTCA+GGG + chr1_3:72184180-72184199 Msa0138960:intron 25.0%
! GTAGCATAAAAGTAAAAATC+GGG - chr1_3:72184260-72184279 None:intergenic 25.0%
!!! TTTTTTGATTTGCTAGATTG+AGG + chr1_3:72184440-72184459 Msa0138960:intron 25.0%
! TATGGATTTCATTCATGAAA+TGG + chr1_3:72184611-72184630 Msa0138960:CDS 25.0%
! ATGGATTTCATTCATGAAAT+GGG + chr1_3:72184612-72184631 Msa0138960:CDS 25.0%
! TAACCATCCTATATTTCAAT+TGG - chr1_3:72184656-72184675 None:intergenic 25.0%
! ATTACCAAAAGCCAAAATAA+GGG - chr1_3:72185423-72185442 None:intergenic 25.0%
!!! AGTAACACAATTTTGATTAC+AGG + chr1_3:72185478-72185497 Msa0138960:intron 25.0%
! CTAAGTGAATGTAAGTATAA+TGG - chr1_3:72185577-72185596 None:intergenic 25.0%
! TGCAACTAATAAAACTTGAT+AGG + chr1_3:72185956-72185975 Msa0138960:three_prime_UTR 25.0%
!!! ACAAATTGAGTTTTAACATG+AGG - chr1_3:72186139-72186158 None:intergenic 25.0%
TATGGGGGTTACAATATTAA+TGG + chr1_3:72181576-72181595 Msa0138960:five_prime_UTR 30.0%
ATGGGGGTTACAATATTAAT+GGG + chr1_3:72181577-72181596 Msa0138960:five_prime_UTR 30.0%
! GAAACATGCGTATTCTAAAA+AGG - chr1_3:72181658-72181677 None:intergenic 30.0%
!! TTGACATGCAATCGATTTTT+AGG + chr1_3:72181683-72181702 Msa0138960:five_prime_UTR 30.0%
CAAGCTTATGATTTATGAGA+CGG + chr1_3:72181753-72181772 Msa0138960:five_prime_UTR 30.0%
CATATGGCAATAATGACATT+TGG + chr1_3:72181813-72181832 Msa0138960:five_prime_UTR 30.0%
AATTCTCTTGTTCTCGTAAA+AGG - chr1_3:72182054-72182073 None:intergenic 30.0%
!! AAGAGAATTTGTTGAGAGAA+GGG + chr1_3:72182065-72182084 Msa0138960:five_prime_UTR 30.0%
TGATGTTGTGTTATAACAGT+TGG - chr1_3:72182151-72182170 None:intergenic 30.0%
GAATCAAATGCAACAAGAAA+TGG + chr1_3:72182183-72182202 Msa0138960:CDS 30.0%
!! ATATATGTTGACTCAGATGA+TGG + chr1_3:72182346-72182365 Msa0138960:CDS 30.0%
TTGACTTCATTTATGGATAG+AGG + chr1_3:72182643-72182662 Msa0138960:intron 30.0%
AAATGAAATAGGATCTTTGG+TGG + chr1_3:72182945-72182964 Msa0138960:intron 30.0%
AGTACAAGAGGAAATTCATT+TGG - chr1_3:72183166-72183185 None:intergenic 30.0%
! CAAATGGCATTCATTTTCAA+CGG + chr1_3:72183593-72183612 Msa0138960:CDS 30.0%
! TGTCTCTGTTGTTATTCTTA+TGG + chr1_3:72183626-72183645 Msa0138960:intron 30.0%
!!! TACTACTTTTTTTATGGTGC+AGG + chr1_3:72183687-72183706 Msa0138960:intron 30.0%
! AGAGCTCAATTTTCTGTTAA+AGG + chr1_3:72183801-72183820 Msa0138960:CDS 30.0%
ATTTAACTACCAACATGCAA+AGG - chr1_3:72183884-72183903 None:intergenic 30.0%
ATGTTCAAACAAAATCCAGT+AGG - chr1_3:72183935-72183954 None:intergenic 30.0%
!! TGCTTTAGAAGGAAAATATC+TGG + chr1_3:72184018-72184037 Msa0138960:CDS 30.0%
AAATGGAAGAGGATTTATTG+AGG + chr1_3:72184132-72184151 Msa0138960:CDS 30.0%
GTAAACAGAAAAAAGTAGTC+AGG + chr1_3:72184179-72184198 Msa0138960:intron 30.0%
AAACAGAAAAAAGTAGTCAG+GGG + chr1_3:72184181-72184200 Msa0138960:intron 30.0%
CTAGTTATTACTCAATGAGA+GGG + chr1_3:72184211-72184230 Msa0138960:intron 30.0%
TAGTTATTACTCAATGAGAG+GGG + chr1_3:72184212-72184231 Msa0138960:intron 30.0%
TTATGCTACATTTCAACACA+CGG + chr1_3:72184271-72184290 Msa0138960:intron 30.0%
TAAAAGACAGCTTATGAGTT+AGG - chr1_3:72184323-72184342 None:intergenic 30.0%
CAGTAAAAATAATGACACAC+TGG - chr1_3:72184365-72184384 None:intergenic 30.0%
AAACTGATCCAGATATTGAA+GGG + chr1_3:72184559-72184578 Msa0138960:CDS 30.0%
ACAGAAGCCAATTGAAATAT+AGG + chr1_3:72184646-72184665 Msa0138960:CDS 30.0%
AAGCCAATTGAAATATAGGA+TGG + chr1_3:72184650-72184669 Msa0138960:CDS 30.0%
TAGATCTCTTTCCATTAGAA+CGG + chr1_3:72184691-72184710 Msa0138960:intron 30.0%
TAACAGTTTCATCAAAGAGT+AGG - chr1_3:72184782-72184801 None:intergenic 30.0%
! AAAGTGCTTGATACAATGTA+GGG - chr1_3:72184818-72184837 None:intergenic 30.0%
! AGTAGAAATTTTACCATGCA+AGG - chr1_3:72185086-72185105 None:intergenic 30.0%
TCTTGTAGTGATATAAGTCA+AGG - chr1_3:72185110-72185129 None:intergenic 30.0%
TTACCAAAAGCCAAAATAAG+GGG - chr1_3:72185422-72185441 None:intergenic 30.0%
GATTACCAAAAGCCAAAATA+AGG - chr1_3:72185424-72185443 None:intergenic 30.0%
!!! AACACAATTTTGATTACAGG+TGG + chr1_3:72185481-72185500 Msa0138960:intron 30.0%
!!! ACACAATTTTGATTACAGGT+GGG + chr1_3:72185482-72185501 Msa0138960:intron 30.0%
! TGCAGTTCTACAAGAAATTT+TGG - chr1_3:72185768-72185787 None:intergenic 30.0%
AAAACTTGATAGGTCATGTA+TGG + chr1_3:72185966-72185985 Msa0138960:three_prime_UTR 30.0%
AGGATAATAATGTCCATAGA+AGG - chr1_3:72186083-72186102 None:intergenic 30.0%
TGGACATTATTATCCTTCTA+TGG + chr1_3:72186087-72186106 Msa0138960:three_prime_UTR 30.0%
ATCCTTCGTACTGTAATATT+TGG + chr1_3:72186163-72186182 Msa0138960:three_prime_UTR 30.0%
ATCCAAATATTACAGTACGA+AGG - chr1_3:72186168-72186187 None:intergenic 30.0%
!!! TTTTCTAAGGTGGGACTTAA+AGG - chr1_3:72181267-72181286 None:intergenic 35.0%
!!! CTCTCTGTTTTTTCTAAGGT+GGG - chr1_3:72181276-72181295 None:intergenic 35.0%
CAATTAGGCATAAGACACAA+AGG + chr1_3:72181406-72181425 Msa0138960:five_prime_UTR 35.0%
AAGACACAAAGGAACTTTGA+TGG + chr1_3:72181417-72181436 Msa0138960:five_prime_UTR 35.0%
AGACACAAAGGAACTTTGAT+GGG + chr1_3:72181418-72181437 Msa0138960:five_prime_UTR 35.0%
ATGGGAGCTTATGTTGAAAA+TGG + chr1_3:72181595-72181614 Msa0138960:five_prime_UTR 35.0%
!! TCTATGTTATGAGTTTGCTG+AGG + chr1_3:72181888-72181907 Msa0138960:five_prime_UTR 35.0%
GTTAATAGATCCTGATCTGT+AGG - chr1_3:72181971-72181990 None:intergenic 35.0%
CAAGTCAGAATGATGAACAA+GGG + chr1_3:72182011-72182030 Msa0138960:five_prime_UTR 35.0%
!! CAAGAGAATTTGTTGAGAGA+AGG + chr1_3:72182064-72182083 Msa0138960:five_prime_UTR 35.0%
!! AGAGAATTTGTTGAGAGAAG+GGG + chr1_3:72182066-72182085 Msa0138960:five_prime_UTR 35.0%
TTCTTCAAGAAATTCAGGGA+TGG + chr1_3:72182090-72182109 Msa0138960:exon 35.0%
!! GTATCAGCTTTATTCTCCAA+TGG + chr1_3:72182112-72182131 Msa0138960:CDS 35.0%
TTTATTCTCCAATGGTTCTC+AGG + chr1_3:72182120-72182139 Msa0138960:CDS 35.0%
TTATTCTCCAATGGTTCTCA+GGG + chr1_3:72182121-72182140 Msa0138960:CDS 35.0%
!! AGATATGAGTTGATGATCAG+AGG - chr1_3:72182230-72182249 None:intergenic 35.0%
AGTAGCAAGATTTGTAGAGA+CGG - chr1_3:72182395-72182414 None:intergenic 35.0%
TCTGAATTTCCACTTGTTTG+AGG - chr1_3:72182469-72182488 None:intergenic 35.0%
TACAGCAAACAAACATACCT+GGG - chr1_3:72182533-72182552 None:intergenic 35.0%
TTATGGATAGAGGATGTTTC+TGG + chr1_3:72182653-72182672 Msa0138960:intron 35.0%
!! TTGCTGGTTCTTTAACTTAC+CGG + chr1_3:72182703-72182722 Msa0138960:intron 35.0%
! GTGGTGTTTTACATGTTTTG+TGG + chr1_3:72182733-72182752 Msa0138960:intron 35.0%
GCATAGAAATCATGCAAACA+GGG - chr1_3:72182821-72182840 None:intergenic 35.0%
AGCATAGAAATCATGCAAAC+AGG - chr1_3:72182822-72182841 None:intergenic 35.0%
TATTTCCCCATTTCTAACCA+TGG + chr1_3:72183004-72183023 Msa0138960:intron 35.0%
AAACAGCCATGGTTAGAAAT+GGG - chr1_3:72183013-72183032 None:intergenic 35.0%
TAAACAGCCATGGTTAGAAA+TGG - chr1_3:72183014-72183033 None:intergenic 35.0%
ATTTCTAACCATGGCTGTTT+AGG + chr1_3:72183013-72183032 Msa0138960:intron 35.0%
TCAATTGGCAGATTCTAGAT+TGG + chr1_3:72183275-72183294 Msa0138960:intron 35.0%
ATGTAGCTCTCAATATCAGT+AGG - chr1_3:72183313-72183332 None:intergenic 35.0%
TGGTCAAAACAATACAACCA+GGG - chr1_3:72183339-72183358 None:intergenic 35.0%
ATGGTCAAAACAATACAACC+AGG - chr1_3:72183340-72183359 None:intergenic 35.0%
! ATGTCTCAGATGATACGTTT+TGG + chr1_3:72183537-72183556 Msa0138960:CDS 35.0%
!!! GATGATACGTTTTGGAAAAC+TGG + chr1_3:72183545-72183564 Msa0138960:CDS 35.0%
!!! ATACGTTTTGGAAAACTGGA+TGG + chr1_3:72183549-72183568 Msa0138960:CDS 35.0%
!!! TACGTTTTGGAAAACTGGAT+GGG + chr1_3:72183550-72183569 Msa0138960:CDS 35.0%
TATCAGAGTGCAACATCAAA+TGG + chr1_3:72183577-72183596 Msa0138960:CDS 35.0%
! CTATAATTGTTGCTTCGGAA+AGG - chr1_3:72183738-72183757 None:intergenic 35.0%
TAACCTAAGGACAAGTTTGA+GGG - chr1_3:72183993-72184012 None:intergenic 35.0%
TTAACCTAAGGACAAGTTTG+AGG - chr1_3:72183994-72184013 None:intergenic 35.0%
CTAAAGCACACATTAACCTA+AGG - chr1_3:72184006-72184025 None:intergenic 35.0%
! AGGTTAATGTGTGCTTTAGA+AGG + chr1_3:72184007-72184026 Msa0138960:intron 35.0%
CAGGTACAGAACATGAAAAT+TGG - chr1_3:72184108-72184127 None:intergenic 35.0%
GCTAGTTATTACTCAATGAG+AGG + chr1_3:72184210-72184229 Msa0138960:intron 35.0%
AGTTATTACTCAATGAGAGG+GGG + chr1_3:72184213-72184232 Msa0138960:intron 35.0%
GTTTCACTTGATTCTAGTAG+AGG - chr1_3:72184543-72184562 None:intergenic 35.0%
GAAACTGATCCAGATATTGA+AGG + chr1_3:72184558-72184577 Msa0138960:CDS 35.0%
TAAAGCCAAAAGTCAAGCTA+TGG + chr1_3:72184593-72184612 Msa0138960:CDS 35.0%
! GAAATCCATAGCTTGACTTT+TGG - chr1_3:72184601-72184620 None:intergenic 35.0%
ATTTCATTCATGAAATGGGC+TGG + chr1_3:72184616-72184635 Msa0138960:CDS 35.0%
! ATGGCTTATGGAGTTTTCAA+TGG + chr1_3:72184719-72184738 Msa0138960:CDS 35.0%
! AGTTTTCAATGGACCATGAT+TGG + chr1_3:72184730-72184749 Msa0138960:CDS 35.0%
!! GAAAGTGCTTGATACAATGT+AGG - chr1_3:72184819-72184838 None:intergenic 35.0%
TATCAAGCACTTTCAGAGAT+GGG + chr1_3:72184825-72184844 Msa0138960:CDS 35.0%
GAGAAATAGCAAACAGTTAG+TGG + chr1_3:72184869-72184888 Msa0138960:intron 35.0%
AGTTCATCAGATGTATTGTC+AGG - chr1_3:72184915-72184934 None:intergenic 35.0%
GACAATACATCTGATGAACT+AGG + chr1_3:72184915-72184934 Msa0138960:CDS 35.0%
! TATATGAAGTGGTGTCAAAC+CGG - chr1_3:72185012-72185031 None:intergenic 35.0%
GAATTGTACCAGTTAAAAGC+AGG - chr1_3:72185227-72185246 None:intergenic 35.0%
TCACTAGCAGTATATAAGTG+TGG - chr1_3:72185249-72185268 None:intergenic 35.0%
ACAATATCAGTGACCAAAGT+AGG - chr1_3:72185330-72185349 None:intergenic 35.0%
CTTTGGTCACTGATATTGTT+TGG + chr1_3:72185331-72185350 Msa0138960:intron 35.0%
TACCAAAAGCCAAAATAAGG+GGG - chr1_3:72185421-72185440 None:intergenic 35.0%
! TGAATGACTCATTTTGCTTC+GGG - chr1_3:72185682-72185701 None:intergenic 35.0%
! GTGAATGACTCATTTTGCTT+CGG - chr1_3:72185683-72185702 None:intergenic 35.0%
! TCATTCACTAGCTTAGAGAT+TGG + chr1_3:72185695-72185714 Msa0138960:CDS 35.0%
ATTTCTTGTAGAACTGCAGT+AGG + chr1_3:72185770-72185789 Msa0138960:CDS 35.0%
TCGGAACATGTATAGAACTT+CGG - chr1_3:72185885-72185904 None:intergenic 35.0%
GTTCATAAACTAAATGACCG+AGG + chr1_3:72185993-72186012 Msa0138960:three_prime_UTR 35.0%
AAACTAAATGACCGAGGTTT+AGG + chr1_3:72185999-72186018 Msa0138960:three_prime_UTR 35.0%
CTGGTTGTGTTTCTTTGTAT+TGG + chr1_3:72186023-72186042 Msa0138960:three_prime_UTR 35.0%
TGTACAAGTATGTCCATAGA+AGG - chr1_3:72186103-72186122 None:intergenic 35.0%
CTATGGACATACTTGTACAA+TGG + chr1_3:72186104-72186123 Msa0138960:three_prime_UTR 35.0%
!!! CCTCTCTGTTTTTTCTAAGG+TGG - chr1_3:72181277-72181296 None:intergenic 40.0%
CCACCTTAGAAAAAACAGAG+AGG + chr1_3:72181274-72181293 Msa0138960:five_prime_UTR 40.0%
!!! GTGCCTCTCTGTTTTTTCTA+AGG - chr1_3:72181280-72181299 None:intergenic 40.0%
ATCGAGAGTCTAAGCAAGAT+CGG - chr1_3:72181346-72181365 None:intergenic 40.0%
TGGTCTGAGAAATCAACAAC+TGG + chr1_3:72181539-72181558 Msa0138960:five_prime_UTR 40.0%
! TGGCCTCTAAAGAAGGATAT+GGG + chr1_3:72181559-72181578 Msa0138960:five_prime_UTR 40.0%
!!! GAGTTTGCTGAGGTTTTCTT+TGG + chr1_3:72181898-72181917 Msa0138960:five_prime_UTR 40.0%
! TTGCTGAGGTTTTCTTTGGA+TGG + chr1_3:72181902-72181921 Msa0138960:five_prime_UTR 40.0%
! TGCTGAGGTTTTCTTTGGAT+GGG + chr1_3:72181903-72181922 Msa0138960:five_prime_UTR 40.0%
GCAAGTCAGAATGATGAACA+AGG + chr1_3:72182010-72182029 Msa0138960:five_prime_UTR 40.0%
!! GAGAATTTGTTGAGAGAAGG+GGG + chr1_3:72182067-72182086 Msa0138960:five_prime_UTR 40.0%
GGGGTTCTTCAAGAAATTCA+GGG + chr1_3:72182086-72182105 Msa0138960:five_prime_UTR 40.0%
TATTCTCCAATGGTTCTCAG+GGG + chr1_3:72182122-72182141 Msa0138960:CDS 40.0%
!! TGTTGACTCAGATGATGGAA+CGG + chr1_3:72182351-72182370 Msa0138960:CDS 40.0%
GTAGCAAGATTTGTAGAGAC+GGG - chr1_3:72182394-72182413 None:intergenic 40.0%
! GAGAATCTTGTTGTGTCCAA+GGG - chr1_3:72182432-72182451 None:intergenic 40.0%
! TGAGAATCTTGTTGTGTCCA+AGG - chr1_3:72182433-72182452 None:intergenic 40.0%
GAATTTCCACTTGTTTGAGG+TGG - chr1_3:72182466-72182485 None:intergenic 40.0%
GTACAGCAAACAAACATACC+TGG - chr1_3:72182534-72182553 None:intergenic 40.0%
GTACCATCTTTGCACTCAAA+TGG + chr1_3:72182587-72182606 Msa0138960:intron 40.0%
CTTCCATTTGAGTGCAAAGA+TGG - chr1_3:72182593-72182612 None:intergenic 40.0%
!! TGTTTCTGGTAACCCTCATA+AGG + chr1_3:72182667-72182686 Msa0138960:intron 40.0%
CATCACACATTGCCTTATGA+GGG - chr1_3:72182682-72182701 None:intergenic 40.0%
ACATCACACATTGCCTTATG+AGG - chr1_3:72182683-72182702 None:intergenic 40.0%
TTAACTTACCGGTGAAGTTG+TGG + chr1_3:72182714-72182733 Msa0138960:intron 40.0%
GTAAAACACCACAACTTCAC+CGG - chr1_3:72182725-72182744 None:intergenic 40.0%
TACAGTCACGACAAAAAGGT+GGG - chr1_3:72182761-72182780 None:intergenic 40.0%
TTACAGTCACGACAAAAAGG+TGG - chr1_3:72182762-72182781 None:intergenic 40.0%
TCGTTACAGTCACGACAAAA+AGG - chr1_3:72182765-72182784 None:intergenic 40.0%
GTAACGACTAACAAGCAACA+TGG + chr1_3:72182778-72182797 Msa0138960:intron 40.0%
CATGCAAACAGGGAAATTGA+AGG - chr1_3:72182811-72182830 None:intergenic 40.0%
AACAGCCATGGTTAGAAATG+GGG - chr1_3:72183012-72183031 None:intergenic 40.0%
! AAAGCATTCCTAAACAGCCA+TGG - chr1_3:72183024-72183043 None:intergenic 40.0%
ATCACATCGAGGGTTTCAAT+TGG + chr1_3:72183260-72183279 Msa0138960:intron 40.0%
CTCAATATCAGTAGGACTGT+GGG - chr1_3:72183305-72183324 None:intergenic 40.0%
TCTCAATATCAGTAGGACTG+TGG - chr1_3:72183306-72183325 None:intergenic 40.0%
TTTGACCATTTATCTGCGTC+AGG + chr1_3:72183351-72183370 Msa0138960:CDS 40.0%
TTCCAGTTTGATTAAGCTGC+TGG + chr1_3:72183514-72183533 Msa0138960:CDS 40.0%
ATCCAGCAGCTTAATCAAAC+TGG - chr1_3:72183519-72183538 None:intergenic 40.0%
TGTTAGTCCAATTGCTGTAC+CGG + chr1_3:72183770-72183789 Msa0138960:CDS 40.0%
AATTGAGCTCTCTTTGATGC+CGG - chr1_3:72183792-72183811 None:intergenic 40.0%
AAGCAACAGAGATTACCTTG+TGG - chr1_3:72183847-72183866 None:intergenic 40.0%
CTTGTCAATCCTTTGCATGT+TGG + chr1_3:72183872-72183891 Msa0138960:intron 40.0%
! TTTAAGTGACTTGGACCTAC+TGG + chr1_3:72183917-72183936 Msa0138960:intron 40.0%
TGAAGATGCTCATGAGTCAA+CGG + chr1_3:72184045-72184064 Msa0138960:CDS 40.0%
TGTTCTGTACCTGTGACAAA+TGG + chr1_3:72184115-72184134 Msa0138960:CDS 40.0%
AATCCTCTTCCATTTGTCAC+AGG - chr1_3:72184127-72184146 None:intergenic 40.0%
GTTATTACTCAATGAGAGGG+GGG + chr1_3:72184214-72184233 Msa0138960:intron 40.0%
! ATTTGCTAGATTGAGGACCA+GGG + chr1_3:72184447-72184466 Msa0138960:intron 40.0%
CAGCTTCTTTCCTTTCATAG+TGG + chr1_3:72184479-72184498 Msa0138960:CDS 40.0%
TTTCCAGTCCCTTCAATATC+TGG - chr1_3:72184570-72184589 None:intergenic 40.0%
! AGGATGGTTAACTTGAACTC+TGG + chr1_3:72184666-72184685 Msa0138960:CDS 40.0%
TTCCATTAGAACGGTTCACA+TGG + chr1_3:72184700-72184719 Msa0138960:CDS 40.0%
GTATCAAGCACTTTCAGAGA+TGG + chr1_3:72184824-72184843 Msa0138960:CDS 40.0%
TTGTTTAGACCTGATGCTGT+TGG + chr1_3:72184981-72185000 Msa0138960:CDS 40.0%
TCTGACTAATGATCCTTGCA+TGG + chr1_3:72185070-72185089 Msa0138960:CDS 40.0%
GTACCAACCAATCATATAGC+TGG + chr1_3:72185296-72185315 Msa0138960:intron 40.0%
CAACCAGCTATATGATTGGT+TGG - chr1_3:72185302-72185321 None:intergenic 40.0%
AGGTCAACCAGCTATATGAT+TGG - chr1_3:72185306-72185325 None:intergenic 40.0%
TCAGCTATTCACACAAGACA+CGG - chr1_3:72185384-72185403 None:intergenic 40.0%
ACCAAAAGCCAAAATAAGGG+GGG - chr1_3:72185420-72185439 None:intergenic 40.0%
TTGATTACAGGTGGGAATTG+AGG + chr1_3:72185490-72185509 Msa0138960:intron 40.0%
! GAATGACTCATTTTGCTTCG+GGG - chr1_3:72185681-72185700 None:intergenic 40.0%
CACAAAGTTTACAGTTCCCT+CGG - chr1_3:72185742-72185761 None:intergenic 40.0%
CGGAACATGTATAGAACTTC+GGG - chr1_3:72185884-72185903 None:intergenic 40.0%
ATGATTCCCATCTGAAAGGT+CGG - chr1_3:72185904-72185923 None:intergenic 40.0%
ACCTTTCAGATGGGAATCAT+TGG + chr1_3:72185904-72185923 Msa0138960:CDS 40.0%
TCCAATGATTCCCATCTGAA+AGG - chr1_3:72185908-72185927 None:intergenic 40.0%
AGATGGGAATCATTGGAGTT+CGG + chr1_3:72185911-72185930 Msa0138960:CDS 40.0%
CACTATTGGAAACGTGCTAC+CGG + chr1_3:72181177-72181196 Msa0138960:five_prime_UTR 45.0%
ACTATTGGAAACGTGCTACC+GGG + chr1_3:72181178-72181197 Msa0138960:five_prime_UTR 45.0%
!! CCTAAAATGCGGCTTTTTCC+CGG - chr1_3:72181199-72181218 None:intergenic 45.0%
! CGGGAAAAAGCCGCATTTTA+GGG + chr1_3:72181197-72181216 Msa0138960:five_prime_UTR 45.0%
! GGGAAAAAGCCGCATTTTAG+GGG + chr1_3:72181198-72181217 Msa0138960:five_prime_UTR 45.0%
! GGAAAAAGCCGCATTTTAGG+GGG + chr1_3:72181199-72181218 Msa0138960:five_prime_UTR 45.0%
!! GAAAAAGCCGCATTTTAGGG+GGG + chr1_3:72181200-72181219 Msa0138960:five_prime_UTR 45.0%
TCGAGAGTCTAAGCAAGATC+GGG - chr1_3:72181345-72181364 None:intergenic 45.0%
! CAACAACTGGCCTCTAAAGA+AGG + chr1_3:72181552-72181571 Msa0138960:five_prime_UTR 45.0%
! CTGGCCTCTAAAGAAGGATA+TGG + chr1_3:72181558-72181577 Msa0138960:five_prime_UTR 45.0%
! GGCCTCTAAAGAAGGATATG+GGG + chr1_3:72181560-72181579 Msa0138960:five_prime_UTR 45.0%
! GCCTCTAAAGAAGGATATGG+GGG + chr1_3:72181561-72181580 Msa0138960:five_prime_UTR 45.0%
ACCCCCATATCCTTCTTTAG+AGG - chr1_3:72181565-72181584 None:intergenic 45.0%
GGGGGTTCTTCAAGAAATTC+AGG + chr1_3:72182085-72182104 Msa0138960:five_prime_UTR 45.0%
TCAAGTCCACCTCAAACAAG+TGG + chr1_3:72182457-72182476 Msa0138960:CDS 45.0%
TTCTCCGCTAGAACTAGAAG+GGG - chr1_3:72182509-72182528 None:intergenic 45.0%
CTTCTCCGCTAGAACTAGAA+GGG - chr1_3:72182510-72182529 None:intergenic 45.0%
AGGCAATGTGTGATGTTTGC+TGG + chr1_3:72182687-72182706 Msa0138960:intron 45.0%
ACTAACAAGCAACATGGCTC+AGG + chr1_3:72182784-72182803 Msa0138960:intron 45.0%
CTAACAAGCAACATGGCTCA+GGG + chr1_3:72182785-72182804 Msa0138960:intron 45.0%
ACATTAAACGGAGCAAGTGC+TGG - chr1_3:72182892-72182911 None:intergenic 45.0%
TCCTCTTGTACTTAGAGCAC+AGG + chr1_3:72183174-72183193 Msa0138960:CDS 45.0%
! ACCTGTGCTCTAAGTACAAG+AGG - chr1_3:72183178-72183197 None:intergenic 45.0%
!! CGGTTATTTCTGCTAGCGTA+CGG + chr1_3:72183436-72183455 Msa0138960:intron 45.0%
CAGTCATGTCGTGTAAGATG+AGG - chr1_3:72183466-72183485 None:intergenic 45.0%
TTTGATGCCGGTACAGCAAT+TGG - chr1_3:72183780-72183799 None:intergenic 45.0%
ACAGAGATTACCTTGTGGCA+GGG - chr1_3:72183842-72183861 None:intergenic 45.0%
AACAGAGATTACCTTGTGGC+AGG - chr1_3:72183843-72183862 None:intergenic 45.0%
TGACCCTCAAACTTGTCCTT+AGG + chr1_3:72183987-72184006 Msa0138960:intron 45.0%
CTGAAGTTCATCAAGCTCCT+CGG - chr1_3:72184080-72184099 None:intergenic 45.0%
GTACCTGTGACAAATGGAAG+AGG + chr1_3:72184121-72184140 Msa0138960:CDS 45.0%
!! GATTTGCTAGATTGAGGACC+AGG + chr1_3:72184446-72184465 Msa0138960:intron 45.0%
TCCTTTCATAGTGGCAGAAG+AGG + chr1_3:72184488-72184507 Msa0138960:CDS 45.0%
TCCTCTTCTGCCACTATGAA+AGG - chr1_3:72184492-72184511 None:intergenic 45.0%
GATCCAGATATTGAAGGGAC+TGG + chr1_3:72184564-72184583 Msa0138960:CDS 45.0%
AGCCATGTGAACCGTTCTAA+TGG - chr1_3:72184705-72184724 None:intergenic 45.0%
AGAACGGTTCACATGGCTTA+TGG + chr1_3:72184707-72184726 Msa0138960:CDS 45.0%
GTCTTCTTCACAGAGCTGTA+AGG + chr1_3:72184847-72184866 Msa0138960:intron 45.0%
TGAACTAGGACCCAAAGACA+AGG + chr1_3:72184929-72184948 Msa0138960:CDS 45.0%
GACACCACTTCATATAGCAG+CGG + chr1_3:72185016-72185035 Msa0138960:CDS 45.0%
ACACCACTTCATATAGCAGC+GGG + chr1_3:72185017-72185036 Msa0138960:CDS 45.0%
TTTCCCGCTGCTATATGAAG+TGG - chr1_3:72185023-72185042 None:intergenic 45.0%
CATATAGCAGCGGGAAAAGA+TGG + chr1_3:72185026-72185045 Msa0138960:CDS 45.0%
!! ATCGGAGTCCTGCTTTTAAC+TGG + chr1_3:72185216-72185235 Msa0138960:intron 45.0%
TATCAGTGACCAAAGTAGGC+AGG - chr1_3:72185326-72185345 None:intergenic 45.0%
! TTACTGATGCAGTGCTGCTA+AGG - chr1_3:72185463-72185482 None:intergenic 45.0%
CTTGTAGAACTGCAGTAGGA+AGG + chr1_3:72185774-72185793 Msa0138960:CDS 45.0%
AACTGCAGTAGGAAGGTCTA+TGG + chr1_3:72185781-72185800 Msa0138960:CDS 45.0%
ACATGTTCCGACCTTTCAGA+TGG + chr1_3:72185894-72185913 Msa0138960:CDS 45.0%
CATGTTCCGACCTTTCAGAT+GGG + chr1_3:72185895-72185914 Msa0138960:CDS 45.0%
TTGGAGTTCGGAACAAGCTA+AGG + chr1_3:72185923-72185942 Msa0138960:CDS 45.0%
! AAATGACCGAGGTTTAGGAC+TGG + chr1_3:72186004-72186023 Msa0138960:three_prime_UTR 45.0%
ACACAACCAGTCCTAAACCT+CGG - chr1_3:72186013-72186032 None:intergenic 45.0%
! CCGGGAAAAAGCCGCATTTT+AGG + chr1_3:72181196-72181215 Msa0138960:five_prime_UTR 50.0%
CGGGAGAGGGTTGAAAGATT+GGG - chr1_3:72181326-72181345 None:intergenic 50.0%
TCGGGAGAGGGTTGAAAGAT+TGG - chr1_3:72181327-72181346 None:intergenic 50.0%
GTCTAAGCAAGATCGGGAGA+GGG - chr1_3:72181339-72181358 None:intergenic 50.0%
AGTCTAAGCAAGATCGGGAG+AGG - chr1_3:72181340-72181359 None:intergenic 50.0%
GTCAGATCAGCCTACAGATC+AGG + chr1_3:72181958-72181977 Msa0138960:five_prime_UTR 50.0%
! GGGGGACTGTTTGAAATGCT+GGG - chr1_3:72182262-72182281 None:intergenic 50.0%
CAGCATTTCAAACAGTCCCC+CGG + chr1_3:72182261-72182280 Msa0138960:CDS 50.0%
TCTCTTGCTTCCGAGTAAGC+CGG - chr1_3:72182283-72182302 None:intergenic 50.0%
TCGGAAGCAAGAGATAGCAG+TGG + chr1_3:72182289-72182308 Msa0138960:CDS 50.0%
!! CTAGCTCTGTTGACTACCCT+TGG + chr1_3:72182413-72182432 Msa0138960:CDS 50.0%
GCTAGAACTAGAAGGGGACT+GGG - chr1_3:72182503-72182522 None:intergenic 50.0%
!! CAGTCCCCTTCTAGTTCTAG+CGG + chr1_3:72182502-72182521 Msa0138960:CDS 50.0%
GCTTCTCCGCTAGAACTAGA+AGG - chr1_3:72182511-72182530 None:intergenic 50.0%
ATTGAGAGCTACATACGCCC+TGG + chr1_3:72183319-72183338 Msa0138960:CDS 50.0%
GTCAACGGATCAATACTCCG+AGG + chr1_3:72184060-72184079 Msa0138960:CDS 50.0%
AGAAGCTGCTACTCAAACCC+TGG - chr1_3:72184467-72184486 None:intergenic 50.0%
CTAGTAGAGGTTCAAGCACG+CGG - chr1_3:72184530-72184549 None:intergenic 50.0%
TCACCACTGCACACCAATCA+TGG - chr1_3:72184746-72184765 None:intergenic 50.0%
CCAACAAGCGCCTTGTCTTT+GGG - chr1_3:72184942-72184961 None:intergenic 50.0%
ACCAACAAGCGCCTTGTCTT+TGG - chr1_3:72184943-72184962 None:intergenic 50.0%
! AAAGACAAGGCGCTTGTTGG+TGG + chr1_3:72184942-72184961 Msa0138960:CDS 50.0%
AGATGGTTCCGAGGATGTAC+TGG + chr1_3:72185043-72185062 Msa0138960:CDS 50.0%
! CAGAGCATCCAGTACATCCT+CGG - chr1_3:72185054-72185073 None:intergenic 50.0%
AAGCCAAAATAAGGGGGGCT+GGG - chr1_3:72185415-72185434 None:intergenic 50.0%
AAAGCCAAAATAAGGGGGGC+TGG - chr1_3:72185416-72185435 None:intergenic 50.0%
!!! GCCCCCCTTATTTTGGCTTT+TGG + chr1_3:72185416-72185435 Msa0138960:intron 50.0%
TACAGGTGGGAATTGAGGCA+TGG + chr1_3:72185495-72185514 Msa0138960:intron 50.0%
AAGAATGCCCGTGACAGTAC+AGG + chr1_3:72185518-72185537 Msa0138960:CDS 50.0%
CGTAATCGCGCATAATCCTC+AGG - chr1_3:72185551-72185570 None:intergenic 50.0%
GAGGATTATGCGCGATTACG+TGG + chr1_3:72185551-72185570 Msa0138960:CDS 50.0%
AACACAAGGAGCAGCTCATG+TGG + chr1_3:72185616-72185635 Msa0138960:CDS 50.0%
CTGAAGTAAGACGTAGCCGA+GGG + chr1_3:72185723-72185742 Msa0138960:CDS 50.0%
CAGACCTGCAATGCTCTCTA+TGG + chr1_3:72185808-72185827 Msa0138960:CDS 50.0%
ACCTGCAATGCTCTCTATGG+TGG + chr1_3:72185811-72185830 Msa0138960:CDS 50.0%
ACAAACACAGACCGCTGCTA+TGG - chr1_3:72185837-72185856 None:intergenic 50.0%
!! AAAGCCGCATTTTAGGGGGG+CGG + chr1_3:72181203-72181222 Msa0138960:five_prime_UTR 55.0%
TGGAGACCCCTGAGAACCAT+TGG - chr1_3:72182131-72182150 None:intergenic 55.0%
! CGGGGGACTGTTTGAAATGC+TGG - chr1_3:72182263-72182282 None:intergenic 55.0%
AAACAGTCCCCCGGCTTACT+CGG + chr1_3:72182270-72182289 Msa0138960:CDS 55.0%
TCTTGCTTCCGAGTAAGCCG+GGG - chr1_3:72182281-72182300 None:intergenic 55.0%
CTCTTGCTTCCGAGTAAGCC+GGG - chr1_3:72182282-72182301 None:intergenic 55.0%
CGCTAGAACTAGAAGGGGAC+TGG - chr1_3:72182504-72182523 None:intergenic 55.0%
!! TAGTTCTAGCGGAGAAGCCC+AGG + chr1_3:72182513-72182532 Msa0138960:CDS 55.0%
GTCTGTGCGACTCTGAATGG+AGG - chr1_3:72183113-72183132 None:intergenic 55.0%
TCGGTCTGTGCGACTCTGAA+TGG - chr1_3:72183116-72183135 None:intergenic 55.0%
CTCGGCCTGACGCAGATAAA+TGG - chr1_3:72183359-72183378 None:intergenic 55.0%
CATTTATCTGCGTCAGGCCG+AGG + chr1_3:72183357-72183376 Msa0138960:CDS 55.0%
TACTTCCTCCCACACAGCCT+CGG - chr1_3:72183377-72183396 None:intergenic 55.0%
GGACCATGATTGGTGTGCAG+TGG + chr1_3:72184740-72184759 Msa0138960:CDS 55.0%
! CCCAAAGACAAGGCGCTTGT+TGG + chr1_3:72184939-72184958 Msa0138960:CDS 55.0%
! TGAAGTGGTGTCAAACCGGC+AGG - chr1_3:72185008-72185027 None:intergenic 55.0%
AGCGGGAAAAGATGGTTCCG+AGG + chr1_3:72185034-72185053 Msa0138960:CDS 55.0%
GCTGGTTGACCTGCCTACTT+TGG + chr1_3:72185314-72185333 Msa0138960:intron 55.0%
!! AACCCCAGCCCCCCTTATTT+TGG + chr1_3:72185409-72185428 Msa0138960:intron 55.0%
AGCCAAAATAAGGGGGGCTG+GGG - chr1_3:72185414-72185433 None:intergenic 55.0%
TGTGGAGCCTGTACTGTCAC+GGG - chr1_3:72185528-72185547 None:intergenic 55.0%
GTGTGGAGCCTGTACTGTCA+CGG - chr1_3:72185529-72185548 None:intergenic 55.0%
TCGCGCATAATCCTCAGGTG+TGG - chr1_3:72185546-72185565 None:intergenic 55.0%
ACAAGGAGCAGCTCATGTGG+TGG + chr1_3:72185619-72185638 Msa0138960:CDS 55.0%
GCTGAAGTAAGACGTAGCCG+AGG + chr1_3:72185722-72185741 Msa0138960:CDS 55.0%
!! GCCACCATAGAGAGCATTGC+AGG - chr1_3:72185815-72185834 None:intergenic 55.0%
CTCTATGGTGGCCATAGCAG+CGG + chr1_3:72185823-72185842 Msa0138960:CDS 55.0%
AGCAGCGGTCTGTGTTTGTG+TGG + chr1_3:72185838-72185857 Msa0138960:CDS 55.0%
!! AAGCCGCATTTTAGGGGGGC+GGG + chr1_3:72181204-72181223 Msa0138960:five_prime_UTR 60.0%
CAACCCGCCCCCCTAAAATG+CGG - chr1_3:72181210-72181229 None:intergenic 60.0%
!! GCATTTTAGGGGGGCGGGTT+GGG + chr1_3:72181209-72181228 Msa0138960:five_prime_UTR 60.0%
CTTGCTTCCGAGTAAGCCGG+GGG - chr1_3:72182280-72182299 None:intergenic 60.0%
CCTGATGCTGTTGGTCCTGC+CGG + chr1_3:72184990-72185009 Msa0138960:CDS 60.0%
CAGTACAGGCTCCACACCTG+AGG + chr1_3:72185532-72185551 Msa0138960:CDS 60.0%
!! CGCATTTTAGGGGGGCGGGT+TGG + chr1_3:72181208-72181227 Msa0138960:five_prime_UTR 65.0%
ACCTGATGCGCCCTGCCACA+AGG + chr1_3:72183829-72183848 Msa0138960:CDS 65.0%
ACCTTGTGGCAGGGCGCATC+AGG - chr1_3:72183833-72183852 None:intergenic 65.0%
CCGGCAGGACCAACAGCATC+AGG - chr1_3:72184993-72185012 None:intergenic 65.0%
TGCGTCAGGCCGAGGCTGTG+TGG + chr1_3:72183365-72183384 Msa0138960:CDS 70.0%
GCGTCAGGCCGAGGCTGTGT+GGG + chr1_3:72183366-72183385 Msa0138960:CDS 70.0%
TCAGGCCGAGGCTGTGTGGG+AGG + chr1_3:72183369-72183388 Msa0138960:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 72181170 72186209 72181170 ID=Msa0138960;Name=Msa0138960
chr1_3 mRNA 72181170 72186209 72181170 ID=Msa0138960-mRNA-1;Parent=Msa0138960;Name=Msa0138960-mRNA-1;_AED=0.05;_eAED=0.05;_QI=939|0.77|0.7|1|0.77|0.7|10|266|688
chr1_3 exon 72181170 72182534 72181170 ID=Msa0138960-mRNA-1:exon:25132;Parent=Msa0138960-mRNA-1
chr1_3 exon 72183121 72183195 72183121 ID=Msa0138960-mRNA-1:exon:25133;Parent=Msa0138960-mRNA-1
chr1_3 exon 72183286 72183393 72183286 ID=Msa0138960-mRNA-1:exon:25134;Parent=Msa0138960-mRNA-1
chr1_3 exon 72183497 72183614 72183497 ID=Msa0138960-mRNA-1:exon:25135;Parent=Msa0138960-mRNA-1
chr1_3 exon 72183709 72183850 72183709 ID=Msa0138960-mRNA-1:exon:25136;Parent=Msa0138960-mRNA-1
chr1_3 exon 72184009 72184153 72184009 ID=Msa0138960-mRNA-1:exon:25137;Parent=Msa0138960-mRNA-1
chr1_3 exon 72184456 72184687 72184456 ID=Msa0138960-mRNA-1:exon:25138;Parent=Msa0138960-mRNA-1
chr1_3 exon 72184694 72184863 72184694 ID=Msa0138960-mRNA-1:exon:25139;Parent=Msa0138960-mRNA-1
chr1_3 exon 72184885 72185091 72184885 ID=Msa0138960-mRNA-1:exon:25140;Parent=Msa0138960-mRNA-1
chr1_3 exon 72185500 72186209 72185500 ID=Msa0138960-mRNA-1:exon:25141;Parent=Msa0138960-mRNA-1
chr1_3 five_prime_UTR 72181170 72182108 72181170 ID=Msa0138960-mRNA-1:five_prime_utr;Parent=Msa0138960-mRNA-1
chr1_3 CDS 72182109 72182534 72182109 ID=Msa0138960-mRNA-1:cds;Parent=Msa0138960-mRNA-1
chr1_3 CDS 72183121 72183195 72183121 ID=Msa0138960-mRNA-1:cds;Parent=Msa0138960-mRNA-1
chr1_3 CDS 72183286 72183393 72183286 ID=Msa0138960-mRNA-1:cds;Parent=Msa0138960-mRNA-1
chr1_3 CDS 72183497 72183614 72183497 ID=Msa0138960-mRNA-1:cds;Parent=Msa0138960-mRNA-1
chr1_3 CDS 72183709 72183850 72183709 ID=Msa0138960-mRNA-1:cds;Parent=Msa0138960-mRNA-1
chr1_3 CDS 72184009 72184153 72184009 ID=Msa0138960-mRNA-1:cds;Parent=Msa0138960-mRNA-1
chr1_3 CDS 72184456 72184687 72184456 ID=Msa0138960-mRNA-1:cds;Parent=Msa0138960-mRNA-1
chr1_3 CDS 72184694 72184863 72184694 ID=Msa0138960-mRNA-1:cds;Parent=Msa0138960-mRNA-1
chr1_3 CDS 72184885 72185091 72184885 ID=Msa0138960-mRNA-1:cds;Parent=Msa0138960-mRNA-1
chr1_3 CDS 72185500 72185943 72185500 ID=Msa0138960-mRNA-1:cds;Parent=Msa0138960-mRNA-1
chr1_3 three_prime_UTR 72185944 72186209 72185944 ID=Msa0138960-mRNA-1:three_prime_utr;Parent=Msa0138960-mRNA-1
Gene Sequence

>Msa0138960

ATGGTATCAGCTTTATTCTCCAATGGTTCTCAGGGGTCTCCAACTGTTATAACACAACATCAAACTGTATCTATGAATCAAATGCAACAAGAAATGGTGCATACACATGATGTTAGAACCTCTGATCATCAACTCATATCTTCAATAAAACCCAGCATTTCAAACAGTCCCCCGGCTTACTCGGAAGCAAGAGATAGCAGTGGACAAACAAAGATGAATAATTTTGATTTGAATGACATATATGTTGACTCAGATGATGGAACGGAAGATCTAGAAAGACTGCCCGTCTCTACAAATCTTGCTACTAGCTCTGTTGACTACCCTTGGACACAACAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCTAGCGGAGAAGCCCAGAGTCGCACAGACCGAATTGTTTTTAAACTCTTCGGTAAAGAGCCAAATGAATTTCCTCTTGTACTTAGAGCACAGATTCTAGATTGGTTATCCCACAGTCCTACTGATATTGAGAGCTACATACGCCCTGGTTGTATTGTTTTGACCATTTATCTGCGTCAGGCCGAGGCTGTGTGGGAGGAACTTTGCTGTGATCTGACTTCCAGTTTGATTAAGCTGCTGGATGTCTCAGATGATACGTTTTGGAAAACTGGATGGGTTCATATCAGAGTGCAACATCAAATGGCATTCATTTTCAACGGTCAAGTTGTCATAGATACATCACTACCTTTCCGAAGCAACAATTATAGCAAAATTTGGACTGTTAGTCCAATTGCTGTACCGGCATCAAAGAGAGCTCAATTTTCTGTTAAAGGTGTCAACCTGATGCGCCCTGCCACAAGGTTAATGTGTGCTTTAGAAGGAAAATATCTGGTCTGTGAAGATGCTCATGAGTCAACGGATCAATACTCCGAGGAGCTTGATGAACTTCAGTGCATCCAATTTTCATGTTCTGTACCTGTGACAAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTCTTTCCTTTCATAGTGGCAGAAGAGGATGTTTGCTCAGAGATCCGCGTGCTTGAACCTCTACTAGAATCAAGTGAAACTGATCCAGATATTGAAGGGACTGGAAAAATTAAAGCCAAAAGTCAAGCTATGGATTTCATTCATGAAATGGGCTGGCTTCTTCACAGAAGCCAATTGAAATATAGGATGGTTAACTTGAACTCTGATCTCTTTCCATTAGAACGGTTCACATGGCTTATGGAGTTTTCAATGGACCATGATTGGTGTGCAGTGGTGAAAAAACTGTTGAACCTACTCTTTGATGAAACTGTTAATAAAGGAGATCACCCTACATTGTATCAAGCACTTTCAGAGATGGGTCTTCTTCACAGAGCTTTAGTGGAGCTGCTTTTGCGATATGTTCCTGACAATACATCTGATGAACTAGGACCCAAAGACAAGGCGCTTGTTGGTGGAAAGAATCATAGCTACTTGTTTAGACCTGATGCTGTTGGTCCTGCCGGTTTGACACCACTTCATATAGCAGCGGGAAAAGATGGTTCCGAGGATGTACTGGATGCTCTGACTAATGATCCTTGCATGGTGGGAATTGAGGCATGGAAGAATGCCCGTGACAGTACAGGCTCCACACCTGAGGATTATGCGCGATTACGTGGCCATTATACTTACATTCACTTAGTGCAGAAAAAAATTAACAAAACACAAGGAGCAGCTCATGTGGTGGTTGAGATTCCCATCAATACGACAGAGAGCAATAAAACCCCGAAGCAAAATGAGTCATTCACTAGCTTAGAGATTGGAAAAGCTGAAGTAAGACGTAGCCGAGGGAACTGTAAACTTTGTGATACCAAAATTTCTTGTAGAACTGCAGTAGGAAGGTCTATGGTATACAGACCTGCAATGCTCTCTATGGTGGCCATAGCAGCGGTCTGTGTTTGTGTGGCTCTTCTGTTTAAGAGCTCACCCGAAGTTCTATACATGTTCCGACCTTTCAGATGGGAATCATTGGAGTTCGGAACAAGCTAA
Protein sequence

>Msa0138960

MVSALFSNGSQGSPTVITQHQTVSMNQMQQEMVHTHDVRTSDHQLISSIKPSISNSPPAYSEARDSSGQTKMNNFDLNDIYVDSDDGTEDLERLPVSTNLATSSVDYPWTQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNEFPLVLRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQAEAVWEELCCDLTSSLIKLLDVSDDTFWKTGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKIWTVSPIAVPASKRAQFSVKGVNLMRPATRLMCALEGKYLVCEDAHESTDQYSEELDELQCIQFSCSVPVTNGRGFIEIEDQGLSSSFFPFIVAEEDVCSEIRVLEPLLESSETDPDIEGTGKIKAKSQAMDFIHEMGWLLHRSQLKYRMVNLNSDLFPLERFTWLMEFSMDHDWCAVVKKLLNLLFDETVNKGDHPTLYQALSEMGLLHRALVELLLRYVPDNTSDELGPKDKALVGGKNHSYLFRPDAVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQKKINKTQGAAHVVVEIPINTTESNKTPKQNESFTSLEIGKAEVRRSRGNCKLCDTKISCRTAVGRSMVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYMFRPFRWESLEFGTS*