AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0029550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0029550 MtrunA17_Chr1g0194121 97.607 1003 24 0 1 1003 1 1003 0.0 2043
Msa0029550 MtrunA17_Chr7g0270541 75.347 1010 225 10 8 1003 2 1001 0.0 1497
Msa0029550 MtrunA17_Chr2g0302791 48.936 1034 474 19 7 1002 7 1024 0.0 907
Msa0029550 MtrunA17_Chr1g0162871 32.997 594 364 10 417 1002 435 1002 2.31e-86 299
Msa0029550 MtrunA17_Chr1g0162871 50.303 165 73 4 115 273 74 235 3.55e-38 154
Msa0029550 MtrunA17_Chr8g0360361 67.033 91 30 0 146 236 64 154 2.82e-33 126
Msa0029550 MtrunA17_Chr8g0334671 56.522 115 41 2 116 221 147 261 1.25e-32 129
Msa0029550 MtrunA17_Chr8g0386271 58.511 94 39 0 133 226 85 178 2.41e-31 127
Msa0029550 MtrunA17_Chr4g0046991 62.921 89 33 0 133 221 59 147 3.96e-31 119
Msa0029550 MtrunA17_Chr5g0420051 61.798 89 34 0 132 220 166 254 1.12e-30 126
Msa0029550 MtrunA17_Chr2g0282521 63.043 92 33 1 133 224 51 141 2.29e-30 117
Msa0029550 MtrunA17_Chr2g0308321 64.773 88 31 0 133 220 157 244 2.43e-30 127
Msa0029550 MtrunA17_Chr7g0231911 58.511 94 39 0 137 230 139 232 3.61e-30 122
Msa0029550 MtrunA17_Chr4g0061651 64.773 88 28 1 133 220 112 196 3.22e-29 122
Msa0029550 MtrunA17_Chr3g0122411 56.842 95 41 0 132 226 150 244 8.35e-29 120
Msa0029550 MtrunA17_Chr2g0286661 25.797 345 223 9 430 751 260 594 1.49e-28 123
Msa0029550 MtrunA17_Chr2g0286661 48.315 89 46 0 132 220 88 176 1.08e-20 98.2
Msa0029550 MtrunA17_Chr3g0132091 50.435 115 54 2 133 244 58 172 2.03e-28 117
Msa0029550 MtrunA17_Chr7g0224821 61.364 88 33 1 133 220 64 150 2.76e-28 117
Msa0029550 MtrunA17_Chr7g0258471 68.919 74 23 0 147 220 142 215 2.23e-27 116
Msa0029550 MtrunA17_Chr8g0377421 56.250 80 35 0 147 226 132 211 1.10e-23 102
Msa0029550 MtrunA17_Chr8g0377401 58.108 74 31 0 146 219 161 234 2.44e-21 94.7
Msa0029550 MtrunA17_Chr2g0317041 61.290 62 24 0 132 193 84 145 7.25e-20 87.4
Msa0029550 MtrunA17_Chr1g0175031 55.556 54 24 0 140 193 67 120 5.13e-13 67.4
Msa0029550 MtrunA17_Chr8g0377431 45.070 71 39 0 132 202 136 206 1.12e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0029550 AT2G47070.1 56.604 1007 295 29 6 1003 8 881 0.0 994
Msa0029550 AT3G60030.1 56.392 1009 327 28 16 1003 11 927 0.0 986
Msa0029550 AT2G47070.2 58.383 841 253 21 171 1003 1 752 0.0 888
Msa0029550 AT1G20980.1 32.419 583 358 15 427 1002 481 1034 1.28e-78 278
Msa0029550 AT1G20980.1 41.393 244 94 7 26 260 38 241 1.24e-38 156
Msa0029550 AT1G76580.1 30.690 580 356 12 429 1002 480 1019 3.10e-76 271
Msa0029550 AT1G76580.1 35.273 275 103 7 30 297 40 246 1.64e-35 146
Msa0029550 AT1G76580.3 39.655 232 81 7 30 252 40 221 3.75e-36 147
Msa0029550 AT1G76580.3 36.239 218 131 4 429 644 480 691 3.85e-31 131
Msa0029550 AT1G76580.2 39.655 232 81 7 30 252 40 221 3.82e-36 147
Msa0029550 AT1G76580.2 35.909 220 133 4 429 646 480 693 1.00e-31 133
Msa0029550 AT2G33810.1 61.798 89 34 0 134 222 41 129 3.13e-32 122
Msa0029550 AT1G69170.1 65.909 88 30 0 133 220 110 197 6.55e-32 129
Msa0029550 AT1G02065.1 69.620 79 24 0 147 225 188 266 2.94e-31 126
Msa0029550 AT1G53160.2 60.606 99 33 2 134 226 35 133 6.52e-31 120
Msa0029550 AT1G53160.1 60.606 99 33 2 134 226 35 133 6.52e-31 120
Msa0029550 AT1G53160.3 60.606 99 33 2 134 226 35 133 8.23e-31 119
Msa0029550 AT3G15270.1 58.163 98 38 1 136 230 49 146 3.08e-30 118
Msa0029550 AT5G43270.3 56.701 97 42 0 147 243 169 265 6.94e-29 121
Msa0029550 AT5G43270.1 56.701 97 42 0 147 243 169 265 6.94e-29 121
Msa0029550 AT5G43270.2 56.701 97 42 0 147 243 169 265 6.94e-29 121
Msa0029550 AT5G50570.1 55.319 94 40 1 140 233 94 185 7.11e-29 119
Msa0029550 AT5G50570.2 55.319 94 40 1 140 233 94 185 7.11e-29 119
Msa0029550 AT5G50670.1 55.319 94 40 1 140 233 94 185 7.11e-29 119
Msa0029550 AT5G50670.2 55.319 94 40 1 140 233 94 185 7.11e-29 119
Msa0029550 AT1G27370.6 50.450 111 51 2 110 220 143 249 3.76e-28 117
Msa0029550 AT1G27370.1 50.450 111 51 2 110 220 143 249 5.19e-28 118
Msa0029550 AT1G27370.5 50.450 111 51 2 110 220 143 249 5.19e-28 118
Msa0029550 AT1G27370.3 50.450 111 51 2 110 220 143 249 5.19e-28 118
Msa0029550 AT1G27370.2 50.450 111 51 2 110 220 143 249 5.19e-28 118
Msa0029550 AT1G27370.4 50.450 111 51 2 110 220 143 249 5.19e-28 118
Msa0029550 AT1G27370.7 50.450 111 51 2 110 220 143 249 5.19e-28 118
Msa0029550 AT1G27360.2 50.450 111 50 2 110 220 143 248 1.60e-26 113
Msa0029550 AT1G27360.1 50.450 111 50 2 110 220 143 248 1.60e-26 113
Msa0029550 AT1G27360.3 50.450 111 50 2 110 220 143 248 1.60e-26 113
Msa0029550 AT1G27360.4 50.450 111 50 2 110 220 143 248 1.60e-26 113
Msa0029550 AT3G57920.1 58.242 91 38 0 130 220 42 132 5.48e-26 111
Msa0029550 AT5G18830.2 26.984 315 195 7 382 672 239 542 8.37e-26 115
Msa0029550 AT5G18830.2 54.545 88 39 1 133 220 125 211 2.51e-22 103
Msa0029550 AT5G18830.1 26.984 315 195 7 382 672 239 542 9.32e-26 115
Msa0029550 AT5G18830.1 54.545 88 39 1 133 220 125 211 2.53e-22 103
Msa0029550 AT5G18830.3 26.984 315 195 7 382 672 239 542 1.04e-25 114
Msa0029550 AT5G18830.3 54.545 88 39 1 133 220 125 211 2.66e-22 103
Msa0029550 AT2G42200.1 66.216 74 25 0 147 220 74 147 1.25e-25 110
Msa0029550 AT1G02065.2 68.750 48 15 0 147 194 188 235 6.79e-16 79.0

Find 285 sgRNAs with CRISPR-Local

Find 650 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTTCGTACTGTAATATT+TGG 0.138110 1_1:+54861057 Msa0029550:three_prime_UTR
AATTCTCTTGTTCTCGTAAA+AGG 0.174087 1_1:-54856945 None:intergenic
TGCAGTTCTACAAGAAATTT+TGG 0.179030 1_1:-54860659 None:intergenic
TTATGTGGATTGCTCTTAAT+TGG 0.197692 1_1:+54853297 Msa0029550:five_prime_UTR
GCAACAATTATAGCAAAATT+TGG 0.200968 1_1:+54858639 Msa0029550:CDS
TTTCCAGTCCCTTCAATATC+TGG 0.226153 1_1:-54859461 None:intergenic
TTAATTGTGAATTGTGATTA+TGG 0.233638 1_1:+54853474 Msa0029550:exon
GGATTGTTGGGGATGAATTA+AGG 0.244299 1_1:+54853349 Msa0029550:five_prime_UTR
ACCAACAAGCGCCTTGTCTT+TGG 0.258264 1_1:-54859834 None:intergenic
CTGGTTGTGTTTCTTTGTAT+TGG 0.286506 1_1:+54860917 Msa0029550:three_prime_UTR
TACATATTATTATCCTTCTA+TGG 0.291725 1_1:+54860961 Msa0029550:three_prime_UTR
AGAACGGTTCACATGGCTTA+TGG 0.294581 1_1:+54859601 Msa0029550:CDS
TGGACATTATTATCCTTCTA+TGG 0.295516 1_1:+54860981 Msa0029550:three_prime_UTR
AGATCTTGAGAAAGGGAATA+AGG 0.299596 1_1:+54853750 Msa0029550:CDS
GAAATCCATAGCTTGACTTT+TGG 0.299906 1_1:-54859492 None:intergenic
TTGTTAAAACTCAATTTGTT+AGG 0.313618 1_1:+54861034 Msa0029550:three_prime_UTR
GGGAATGGAATTTGAATGAT+TGG 0.316466 1_1:+54853578 Msa0029550:CDS
AAACTAAATGACCGAGGTTT+AGG 0.318812 1_1:+54860893 Msa0029550:three_prime_UTR
TATGGATTTCATTCATGAAA+TGG 0.320879 1_1:+54859505 Msa0029550:CDS
TTTATTCTCCAATGGTTCTC+AGG 0.328039 1_1:+54857014 Msa0029550:CDS
TTTGATGAAACTGTTAATAA+AGG 0.328176 1_1:+54859680 Msa0029550:CDS
ACAGAAGCCAATTGAAATAT+AGG 0.336809 1_1:+54859540 Msa0029550:CDS
ACCTTGTGGCAGGGCGCATC+AGG 0.339254 1_1:-54858724 None:intergenic
GCACTTAGCTTAAATCTTGC+AGG 0.340035 1_1:+54853835 Msa0029550:CDS
CCAACAAGCGCCTTGTCTTT+GGG 0.348507 1_1:-54859833 None:intergenic
TCATTTGTTGGACTTCCATT+AGG 0.355984 1_1:-54855488 None:intergenic
TAGTTGTTGATTTGTGAAAT+TGG 0.356206 1_1:+54853236 Msa0029550:five_prime_UTR
AGTTTGTGAGATGCATTCTA+AGG 0.361547 1_1:+54853993 Msa0029550:CDS
CCCACTCCGGTCTGGGATCC+CGG 0.362139 1_1:+54853681 Msa0029550:CDS
CTCGGCCTGACGCAGATAAA+TGG 0.364403 1_1:-54858250 None:intergenic
ATCTATTAACTCATCTTCTA+AGG 0.366559 1_1:+54856875 Msa0029550:CDS
AGCCATGTGAACCGTTCTAA+TGG 0.369029 1_1:-54859596 None:intergenic
CAGACCTGCAATGCTCTCTA+TGG 0.376267 1_1:+54860702 Msa0029550:CDS
ATTGCTCTCTGTCGTATTGA+TGG 0.383082 1_1:-54860545 None:intergenic
TAACCATCCTATATTTCAAT+TGG 0.385181 1_1:-54859547 None:intergenic
CTAAGTGAATGTAAGTATAA+TGG 0.386411 1_1:-54860468 None:intergenic
TTTGATGCCGGTACAGCAAT+TGG 0.388018 1_1:-54858671 None:intergenic
GAGAAATAGCAAACAGTTAG+TGG 0.388325 1_1:+54859763 Msa0029550:CDS
TTCCAGTTTGATTAAGCTGC+TGG 0.388701 1_1:+54858408 Msa0029550:CDS
AGGTTAATGTGTGCTTTAGA+AGG 0.390854 1_1:+54858901 Msa0029550:intron
CGGAACATGTATAGAACTTC+GGG 0.394622 1_1:-54860775 None:intergenic
TAATTGTGAATTGTGATTAT+GGG 0.396686 1_1:+54853475 Msa0029550:exon
ACCTTTCAGATGGGAATCAT+TGG 0.397557 1_1:+54860798 Msa0029550:CDS
AATCAAGAAGCTGTTCCTAA+TGG 0.397811 1_1:+54855473 Msa0029550:CDS
GCTTCTCCGCTAGAACTAGA+AGG 0.400011 1_1:-54857402 None:intergenic
CTAGTCTGATCATCATTTGT+TGG 0.400423 1_1:-54855500 None:intergenic
AGTACAAGAGGAAATTCATT+TGG 0.402660 1_1:-54858057 None:intergenic
CAGGTACAGAACATGAAAAT+TGG 0.403924 1_1:-54858999 None:intergenic
ATCCAGCAGCTTAATCAAAC+TGG 0.406521 1_1:-54858410 None:intergenic
GCCACCATAGAGAGCATTGC+AGG 0.412655 1_1:-54860706 None:intergenic
AGATGCATTCTAAGGCTAGT+AGG 0.412881 1_1:+54854001 Msa0029550:CDS
GAATCAAATGCAACAAGAAA+TGG 0.413695 1_1:+54857077 Msa0029550:CDS
ATGTCTCAGATGATACGTTT+TGG 0.415679 1_1:+54858431 Msa0029550:CDS
CTCTTGCTTCCGAGTAAGCC+GGG 0.419245 1_1:-54857173 None:intergenic
TGCTTTAGAAGGAAAATATC+TGG 0.420117 1_1:+54858912 Msa0029550:CDS
TCATTCACTAGCTTAGAGAT+TGG 0.421089 1_1:+54860589 Msa0029550:CDS
ATGGATTTCATTCATGAAAT+GGG 0.424476 1_1:+54859506 Msa0029550:CDS
TCATCTGATTTGAGTGGGAT+GGG 0.427804 1_1:+54853544 Msa0029550:CDS
TTCATCTGATTTGAGTGGGA+TGG 0.429528 1_1:+54853543 Msa0029550:CDS
CAAGAGAATTTGTTGAGAGA+AGG 0.430841 1_1:+54856958 Msa0029550:CDS
TACTGTTGTACTTGATTATG+TGG 0.432479 1_1:+54853282 Msa0029550:five_prime_UTR
TTTGACCATTTATCTGCGTC+AGG 0.436128 1_1:+54858245 Msa0029550:CDS
AGGATAATAATGTCCATAGA+AGG 0.436231 1_1:-54860974 None:intergenic
CCTGATGCTGTTGGTCCTGC+CGG 0.436534 1_1:+54859884 Msa0029550:CDS
AAGAGAATTTGTTGAGAGAA+GGG 0.437952 1_1:+54856959 Msa0029550:CDS
AGATGGTTCCGAGGATGTAC+TGG 0.438143 1_1:+54859937 Msa0029550:CDS
CGCTAGAACTAGAAGGGGAC+TGG 0.439772 1_1:-54857395 None:intergenic
AAAACTTGATAGGTCATGTA+TGG 0.442282 1_1:+54860860 Msa0029550:three_prime_UTR
CAACAAGTGTGGCAGGCAAA+TGG 0.445930 1_1:-54853064 None:intergenic
CGGTCTGGGATCCCGGTGGT+TGG 0.446088 1_1:+54853688 Msa0029550:CDS
TGTACAAGTATGTCCATAGA+AGG 0.446724 1_1:-54860994 None:intergenic
CCCAAAGACAAGGCGCTTGT+TGG 0.448364 1_1:+54859833 Msa0029550:CDS
AGCTGTCGAAGACGCTTGGC+TGG 0.450145 1_1:+54855425 Msa0029550:CDS
TCAATTGGCAGATTCTAGAT+TGG 0.452129 1_1:+54858169 Msa0029550:intron
AGATGGGAATCATTGGAGTT+CGG 0.452671 1_1:+54860805 Msa0029550:CDS
TTCGAATCGAGCTGTCTGTC+AGG 0.452984 1_1:+54853915 Msa0029550:CDS
TCTGAATTTCCACTTGTTTG+AGG 0.453259 1_1:-54857360 None:intergenic
GTGGGATGGGGAGGAGGTCA+AGG 0.453462 1_1:+54853557 Msa0029550:CDS
TATAGCTAGCCGTGTGAATC+CGG 0.453788 1_1:+54853621 Msa0029550:CDS
CGCAAACTCTCCGCCTGCAC+CGG 0.454733 1_1:-54853640 None:intergenic
CATTTATCTGCGTCAGGCCG+AGG 0.455554 1_1:+54858251 Msa0029550:CDS
GTCAGATCAGCCTACAGATC+AGG 0.456789 1_1:+54856852 Msa0029550:CDS
TGTGATGGTATATTCTGTTA+TGG 0.462083 1_1:-54852932 None:intergenic
TCTGGGATCCCGGTGGTTGG+AGG 0.462646 1_1:+54853691 Msa0029550:CDS
TTTCCGTCCCTTTCCACAGC+CGG 0.462810 1_1:-54853868 None:intergenic
CATCTGATTTGAGTGGGATG+GGG 0.463932 1_1:+54853545 Msa0029550:CDS
TTATTCTCCAATGGTTCTCA+GGG 0.464671 1_1:+54857015 Msa0029550:CDS
TTAAATTAATTATAGCTGAC+AGG 0.464842 1_1:+54856830 Msa0029550:intron
TTGCTCTCTGTCGTATTGAT+GGG 0.466728 1_1:-54860544 None:intergenic
AGGATGGTTAACTTGAACTC+TGG 0.466960 1_1:+54859560 Msa0029550:CDS
ATAAGGAAGGGGATAGGAAA+AGG 0.467611 1_1:+54853767 Msa0029550:CDS
AAGGGAATAAGGAAGGGGAT+AGG 0.469713 1_1:+54853761 Msa0029550:CDS
TCTCTTGCTTCCGAGTAAGC+CGG 0.470159 1_1:-54857174 None:intergenic
CCGGCAGGACCAACAGCATC+AGG 0.471054 1_1:-54859884 None:intergenic
TGCAACTAATAAAACTTGAT+AGG 0.471234 1_1:+54860850 Msa0029550:three_prime_UTR
ATTTGAGTGGGATGGGGAGG+AGG 0.473356 1_1:+54853551 Msa0029550:CDS
CTTGAGAAAGGGAATAAGGA+AGG 0.476247 1_1:+54853754 Msa0029550:CDS
TTGATTACAGGTGGGAATTG+AGG 0.477112 1_1:+54860384 Msa0029550:intron
TCCTCTTGTACTTAGAGCAC+AGG 0.478174 1_1:+54858068 Msa0029550:CDS
TGGGGAGGAGGTCAAGGGAA+TGG 0.478218 1_1:+54853563 Msa0029550:CDS
AACAGAGATTACCTTGTGGC+AGG 0.479919 1_1:-54858734 None:intergenic
TGCGTCAGGCCGAGGCTGTG+TGG 0.480436 1_1:+54858259 Msa0029550:CDS
AACTGCAGTAGGAAGGTCTA+TGG 0.480847 1_1:+54860675 Msa0029550:CDS
TCCTCTTCTGCCACTATGAA+AGG 0.481801 1_1:-54859383 None:intergenic
CATATAGCAGCGGGAAAAGA+TGG 0.484670 1_1:+54859920 Msa0029550:CDS
TATCAGAGTGCAACATCAAA+TGG 0.485125 1_1:+54858471 Msa0029550:CDS
AAAGACAAGGCGCTTGTTGG+TGG 0.485410 1_1:+54859836 Msa0029550:CDS
AGGACATGTTTCACCGGCTG+TGG 0.490256 1_1:+54853855 Msa0029550:CDS
CTAGCTCTGTTGACTACCCT+TGG 0.491004 1_1:+54857307 Msa0029550:CDS
TGTTTCACCGGCTGTGGAAA+GGG 0.493285 1_1:+54853861 Msa0029550:CDS
TAAGGCTAGTAGGGCTCTTG+TGG 0.497571 1_1:+54854011 Msa0029550:CDS
TGTTAGTCCAATTGCTGTAC+CGG 0.498218 1_1:+54858664 Msa0029550:CDS
GGAATTTGAATGATTGGAGA+TGG 0.498797 1_1:+54853584 Msa0029550:CDS
CACAAAGTTTACAGTTCCCT+CGG 0.498820 1_1:-54860633 None:intergenic
GAAAGTGCTTGATACAATGT+AGG 0.501114 1_1:-54859710 None:intergenic
GATTTGCTAGATTGAGGACC+AGG 0.501170 1_1:+54859340 Msa0029550:intron
GTATCAGCTTTATTCTCCAA+TGG 0.501723 1_1:+54857006 Msa0029550:CDS
GTCAGAGAGGTGAGGTTGAA+AGG 0.503268 1_1:-54853099 None:intergenic
ATGATGACGAAGAAGAATTA+CGG 0.505958 1_1:-54853001 None:intergenic
TGGAGACCCCTGAGAACCAT+TGG 0.509467 1_1:-54857022 None:intergenic
TAACAGTTTCATCAAAGAGT+AGG 0.509576 1_1:-54859673 None:intergenic
TCCTTTCATAGTGGCAGAAG+AGG 0.510150 1_1:+54859382 Msa0029550:CDS
GAGAAGCTGTCGAAGACGCT+TGG 0.511016 1_1:+54855421 Msa0029550:CDS
CTCAATATCAGTAGGACTGT+GGG 0.513581 1_1:-54858196 None:intergenic
GAGGAAGGAGATCTTGAGAA+AGG 0.514583 1_1:+54853742 Msa0029550:CDS
GTGGTTCATCTGATTTGAGT+GGG 0.514851 1_1:+54853539 Msa0029550:CDS
GGAGCATGAAGAAGACGTAT+TGG 0.515867 1_1:-54853719 None:intergenic
AGTTCATCAGATGTATTGTC+AGG 0.517811 1_1:-54859806 None:intergenic
TAGCCGTGTGAATCCGGTGC+AGG 0.517976 1_1:+54853627 Msa0029550:CDS
GCGTCAGGCCGAGGCTGTGT+GGG 0.518427 1_1:+54858260 Msa0029550:CDS
TAAAGCCAAAAGTCAAGCTA+TGG 0.519399 1_1:+54859487 Msa0029550:CDS
TATATGAAGTGGTGTCAAAC+CGG 0.519627 1_1:-54859903 None:intergenic
TCACCACTGCACACCAATCA+TGG 0.519744 1_1:-54859637 None:intergenic
TAGTTCTAGCGGAGAAGCCC+AGG 0.520957 1_1:+54857407 Msa0029550:CDS
ATGTTTCACCGGCTGTGGAA+AGG 0.521156 1_1:+54853860 Msa0029550:CDS
TTTCTCAAGATCTCCTTCCT+CGG 0.522636 1_1:-54853740 None:intergenic
GAAACTGATCCAGATATTGA+AGG 0.522834 1_1:+54859452 Msa0029550:CDS
TTGGAGTTCGGAACAAGCTA+AGG 0.522976 1_1:+54860817 Msa0029550:CDS
TCGGAACATGTATAGAACTT+CGG 0.525195 1_1:-54860776 None:intergenic
GTCTTCTTCACAGAGCTGTA+AGG 0.525330 1_1:+54859741 Msa0029550:CDS
CAACCACCGGGATCCCAGAC+CGG 0.527167 1_1:-54853687 None:intergenic
AAGAATGCCCGTGACAGTAC+AGG 0.527708 1_1:+54860412 Msa0029550:CDS
AGAGAATTTGTTGAGAGAAG+GGG 0.527845 1_1:+54856960 Msa0029550:CDS
GTTTCACTTGATTCTAGTAG+AGG 0.528154 1_1:-54859434 None:intergenic
ATTTCTTGTAGAACTGCAGT+AGG 0.528560 1_1:+54860664 Msa0029550:CDS
AGGGTTAATTGTTTGTGTTG+AGG 0.528823 1_1:+54853428 Msa0029550:five_prime_UTR
GAAAAGGAGAGTTATTGTGC+TGG 0.529228 1_1:+54853783 Msa0029550:CDS
GTGTGGAGCCTGTACTGTCA+CGG 0.530352 1_1:-54860420 None:intergenic
ACATGTTCCGACCTTTCAGA+TGG 0.530501 1_1:+54860788 Msa0029550:CDS
CCGGGATCCCAGACCGGAGT+GGG 0.530624 1_1:-54853681 None:intergenic
TGATGTTGTGTTATAACAGT+TGG 0.532386 1_1:-54857042 None:intergenic
GCTTGGCTGGCCATAACAAA+CGG 0.533402 1_1:+54855438 Msa0029550:CDS
ACCTGTGCTCTAAGTACAAG+AGG 0.533970 1_1:-54858069 None:intergenic
AGATCGGCAACAAGTGTGGC+AGG 0.534219 1_1:-54853071 None:intergenic
TATCAAGCACTTTCAGAGAC+GGG 0.534522 1_1:+54859719 Msa0029550:CDS
ATTTCATTCATGAAATGGGC+TGG 0.535051 1_1:+54859510 Msa0029550:CDS
GAATTTGAATGATTGGAGAT+GGG 0.536595 1_1:+54853585 Msa0029550:CDS
TTTCCCGCTGCTATATGAAG+TGG 0.537198 1_1:-54859914 None:intergenic
GATCCAGATATTGAAGGGAC+TGG 0.538378 1_1:+54859458 Msa0029550:CDS
GTTATTGTGCTGGAAGATGA+TGG 0.539294 1_1:+54853793 Msa0029550:CDS
TGTTCTGTACCTGTGACAAA+TGG 0.539622 1_1:+54859009 Msa0029550:CDS
TAGATCTCTTTCCATTAGAA+CGG 0.540024 1_1:+54859585 Msa0029550:CDS
CTATGGACATACTTGTACAA+TGG 0.540144 1_1:+54860998 Msa0029550:three_prime_UTR
CTGATTTGAGTGGGATGGGG+AGG 0.540249 1_1:+54853548 Msa0029550:CDS
GGGGTTCTTCAAGAAATTCA+GGG 0.541114 1_1:+54856980 Msa0029550:CDS
GAATTTCCACTTGTTTGAGG+TGG 0.542056 1_1:-54857357 None:intergenic
TTGTTTAGACCTGATGCTGT+TGG 0.542526 1_1:+54859875 Msa0029550:CDS
CGTAATCGCGCATAATCCTC+AGG 0.544188 1_1:-54860442 None:intergenic
ATATATGTTGACTCAGATGA+TGG 0.545000 1_1:+54857240 Msa0029550:CDS
AGGAAGGAGATCTTGAGAAA+GGG 0.547901 1_1:+54853743 Msa0029550:CDS
GTAGCAAGATTTGTAGAGAC+GGG 0.551066 1_1:-54857285 None:intergenic
TTGGACGAACCTCCAACCAC+CGG 0.551797 1_1:-54853700 None:intergenic
CTTCTCCGCTAGAACTAGAA+GGG 0.552259 1_1:-54857401 None:intergenic
TGAGAAAGGGAATAAGGAAG+GGG 0.552930 1_1:+54853756 Msa0029550:CDS
AATCCTCTTCCATTTGTCAC+AGG 0.553594 1_1:-54859018 None:intergenic
ACACCACTTCATATAGCAGC+GGG 0.553941 1_1:+54859911 Msa0029550:CDS
GATGCATTCTAAGGCTAGTA+GGG 0.556125 1_1:+54854002 Msa0029550:CDS
AATTGAGCTCTCTTTGATGC+CGG 0.556172 1_1:-54858683 None:intergenic
GTTAATAGATCCTGATCTGT+AGG 0.556745 1_1:-54856862 None:intergenic
TGGGATGGGGAGGAGGTCAA+GGG 0.558672 1_1:+54853558 Msa0029550:CDS
TCTTCTTCATGCTCCGAGGA+AGG 0.558761 1_1:+54853727 Msa0029550:CDS
AGTAGCAAGATTTGTAGAGA+CGG 0.559291 1_1:-54857286 None:intergenic
TTGAATGATTGGAGATGGGA+TGG 0.559506 1_1:+54853589 Msa0029550:CDS
CTGAAGTTCATCAAGCTCCT+CGG 0.559955 1_1:-54858971 None:intergenic
AATTGTGAATTGTGATTATG+GGG 0.561310 1_1:+54853476 Msa0029550:exon
AAGGCTAGTAGGGCTCTTGT+GGG 0.562216 1_1:+54854012 Msa0029550:CDS
ACCTGATGCGCCCTGCCACA+AGG 0.562538 1_1:+54858723 Msa0029550:CDS
TATTTGGATATAATATTCAG+TGG 0.564159 1_1:+54861073 Msa0029550:three_prime_UTR
ATACTTCAAGAGTTCGATGA+AGG 0.564195 1_1:+54855395 Msa0029550:CDS
GTACTACTTTGAGCTCAGCT+AGG 0.565523 1_1:+54853200 Msa0029550:five_prime_UTR
CTTGTAGAACTGCAGTAGGA+AGG 0.568836 1_1:+54860668 Msa0029550:CDS
CAGCTTCTTTCCTTTCATAG+TGG 0.569410 1_1:+54859373 Msa0029550:CDS
TTCCATTAGAACGGTTCACA+TGG 0.572870 1_1:+54859594 Msa0029550:CDS
TGAAGTGGTGTCAAACCGGC+AGG 0.572947 1_1:-54859899 None:intergenic
CAGCATTTCAAACAGTCCCC+CGG 0.574192 1_1:+54857155 Msa0029550:CDS
GAGAATTTGTTGAGAGAAGG+GGG 0.576069 1_1:+54856961 Msa0029550:CDS
TCAGGCCGAGGCTGTGTGGG+AGG 0.577431 1_1:+54858263 Msa0029550:CDS
CCGTGTGAATCCGGTGCAGG+CGG 0.578551 1_1:+54853630 Msa0029550:CDS
TGTGGAGCCTGTACTGTCAC+GGG 0.578816 1_1:-54860419 None:intergenic
AGAAGCTGCTACTCAAACCC+TGG 0.580967 1_1:-54859358 None:intergenic
ATGTAGCTCTCAATATCAGT+AGG 0.583286 1_1:-54858204 None:intergenic
GTATCAAGCACTTTCAGAGA+CGG 0.583452 1_1:+54859718 Msa0029550:CDS
TGCAGATCTGAGTAGAGGTA+AGG 0.583887 1_1:+54853951 Msa0029550:CDS
CTATAATTGTTGCTTCGGAA+AGG 0.584009 1_1:-54858629 None:intergenic
TCTTGCTTCCGAGTAAGCCG+GGG 0.584021 1_1:-54857172 None:intergenic
TTGAGAAAGGGAATAAGGAA+GGG 0.585696 1_1:+54853755 Msa0029550:CDS
TCAAGTCCACCTCAAACAAG+TGG 0.586688 1_1:+54857351 Msa0029550:CDS
GGTGGTTCATCTGATTTGAG+TGG 0.587139 1_1:+54853538 Msa0029550:CDS
TGGGAGAGACAACGGTGTGA+TGG 0.587565 1_1:-54852947 None:intergenic
ACAGAGATTACCTTGTGGCA+GGG 0.588689 1_1:-54858733 None:intergenic
CAGAGCATCCAGTACATCCT+CGG 0.589070 1_1:-54859945 None:intergenic
ACAAACACAGACCGCTGCTA+TGG 0.592403 1_1:-54860728 None:intergenic
CTCTATGGTGGCCATAGCAG+CGG 0.592561 1_1:+54860717 Msa0029550:CDS
GTACCTGTGACAAATGGAAG+AGG 0.592712 1_1:+54859015 Msa0029550:CDS
ATGATTCCCATCTGAAAGGT+CGG 0.593018 1_1:-54860795 None:intergenic
AGATATGAGTTGATGATCAG+AGG 0.595345 1_1:-54857121 None:intergenic
AAGTAGATCGGCAACAAGTG+TGG 0.596325 1_1:-54853075 None:intergenic
AAGCCAATTGAAATATAGGA+TGG 0.596851 1_1:+54859544 Msa0029550:CDS
TCCAATGATTCCCATCTGAA+AGG 0.600424 1_1:-54860799 None:intergenic
TCTTGCAGGACATGTTTCAC+CGG 0.602620 1_1:+54853849 Msa0029550:CDS
GCTAGAACTAGAAGGGGACT+GGG 0.602647 1_1:-54857394 None:intergenic
TGAGAATCTTGTTGTGTCCA+AGG 0.603103 1_1:-54857324 None:intergenic
ATTGAGAGCTACATACGCCC+TGG 0.604603 1_1:+54858213 Msa0029550:CDS
AAATGGAAGAGGATTTATTG+AGG 0.605184 1_1:+54859026 Msa0029550:CDS
CATGTTCCGACCTTTCAGAT+GGG 0.605353 1_1:+54860789 Msa0029550:CDS
TGGACGAACCTCCAACCACC+GGG 0.606579 1_1:-54853699 None:intergenic
AACACAAGGAGCAGCTCATG+TGG 0.607987 1_1:+54860510 Msa0029550:CDS
TTCTTCAAGAAATTCAGGGA+TGG 0.609933 1_1:+54856984 Msa0029550:CDS
AAACTGATCCAGATATTGAA+GGG 0.611495 1_1:+54859453 Msa0029550:CDS
CAGTCCCCTTCTAGTTCTAG+CGG 0.612309 1_1:+54857396 Msa0029550:CDS
TACTTCCTCCCACACAGCCT+CGG 0.612916 1_1:-54858268 None:intergenic
TGAAGATGCTCATGAGTCAA+CGG 0.614117 1_1:+54858939 Msa0029550:CDS
GAGGATTATGCGCGATTACG+TGG 0.614195 1_1:+54860445 Msa0029550:CDS
ATTGCTCTTAATTGGAACCA+TGG 0.616881 1_1:+54853305 Msa0029550:five_prime_UTR
GTCTGTCAGGTTGAAGACTG+TGG 0.617577 1_1:+54853928 Msa0029550:CDS
CTGGCCATAACAAACGGAGA+AGG 0.618872 1_1:+54855444 Msa0029550:CDS
TCACCGGCTGTGGAAAGGGA+CGG 0.619862 1_1:+54853865 Msa0029550:CDS
GACAATACATCTGATGAACT+AGG 0.621300 1_1:+54859809 Msa0029550:CDS
CAGGCGGAGAGTTTGCGAGT+GGG 0.622495 1_1:+54853646 Msa0029550:CDS
TACAGGTGGGAATTGAGGCA+TGG 0.622502 1_1:+54860389 Msa0029550:intron
GAGAGAGGTGTACGTCAGAG+AGG 0.623693 1_1:-54853112 None:intergenic
CCGCCTGCACCGGATTCACA+CGG 0.624536 1_1:-54853630 None:intergenic
GCAGGCGGAGAGTTTGCGAG+TGG 0.624882 1_1:+54853645 Msa0029550:CDS
TCTCAATATCAGTAGGACTG+TGG 0.625316 1_1:-54858197 None:intergenic
GCAAGTCAGAATGATGAACA+AGG 0.626908 1_1:+54856904 Msa0029550:CDS
ACCTGCAATGCTCTCTATGG+TGG 0.630335 1_1:+54860705 Msa0029550:CDS
TTGTGGGAAATGCAATGCAG+AGG 0.630557 1_1:+54854028 Msa0029550:CDS
GCTGAAGTAAGACGTAGCCG+AGG 0.633383 1_1:+54860616 Msa0029550:CDS
ATGGTCAAAACAATACAACC+AGG 0.638951 1_1:-54858231 None:intergenic
GACACCACTTCATATAGCAG+CGG 0.639223 1_1:+54859910 Msa0029550:CDS
TGTTGACTCAGATGATGGAA+CGG 0.641750 1_1:+54857245 Msa0029550:CDS
AGGTTGAAAGGAAAGTAGAT+CGG 0.643080 1_1:-54853087 None:intergenic
TCTGACTAATGATCCTTGCA+TGG 0.643398 1_1:+54859964 Msa0029550:CDS
GATGGTTTGAATGATGAAGC+TGG 0.645206 1_1:+54853811 Msa0029550:CDS
AAATGACCGAGGTTTAGGAC+TGG 0.645870 1_1:+54860898 Msa0029550:three_prime_UTR
TATTCTCCAATGGTTCTCAG+GGG 0.647451 1_1:+54857016 Msa0029550:CDS
TTCTCCGCTAGAACTAGAAG+GGG 0.647976 1_1:-54857400 None:intergenic
TCGCGCATAATCCTCAGGTG+TGG 0.653531 1_1:-54860437 None:intergenic
AGCAGCGGTCTGTGTTTGTG+TGG 0.653598 1_1:+54860732 Msa0029550:CDS
CTAGTAGAGGTTCAAGCACG+CGG 0.656034 1_1:-54859421 None:intergenic
ATTTGCTAGATTGAGGACCA+GGG 0.658771 1_1:+54859341 Msa0029550:intron
AAAGTGCTTGATACAATGTA+GGG 0.660121 1_1:-54859709 None:intergenic
ATCCAAATATTACAGTACGA+AGG 0.662139 1_1:-54861059 None:intergenic
CTGAAGTAAGACGTAGCCGA+GGG 0.663241 1_1:+54860617 Msa0029550:CDS
TGAACTAGGACCCAAAGACA+AGG 0.663671 1_1:+54859823 Msa0029550:CDS
AGCGGGAAAAGATGGTTCCG+AGG 0.663787 1_1:+54859928 Msa0029550:CDS
TACGTCTTCTTCATGCTCCG+AGG 0.664152 1_1:+54853723 Msa0029550:CDS
ACCGGGATCCCAGACCGGAG+TGG 0.666079 1_1:-54853682 None:intergenic
TGTGGTGCAGATCTGAGTAG+AGG 0.668323 1_1:+54853946 Msa0029550:CDS
CAGTACAGGCTCCACACCTG+AGG 0.669316 1_1:+54860426 Msa0029550:CDS
AGGTGTACGTCAGAGAGGTG+AGG 0.671365 1_1:-54853107 None:intergenic
ACAAGGAGCAGCTCATGTGG+TGG 0.675515 1_1:+54860513 Msa0029550:CDS
AGAGCACACGGACACAACCA+TGG 0.676729 1_1:-54853322 None:intergenic
GAGAATCTTGTTGTGTCCAA+GGG 0.677067 1_1:-54857323 None:intergenic
GTTCATAAACTAAATGACCG+AGG 0.680511 1_1:+54860887 Msa0029550:three_prime_UTR
CAAGTCAGAATGATGAACAA+GGG 0.681362 1_1:+54856905 Msa0029550:CDS
ACTCCGGTCTGGGATCCCGG+TGG 0.685385 1_1:+54853684 Msa0029550:CDS
ACACAACCAGTCCTAAACCT+CGG 0.686659 1_1:-54860904 None:intergenic
TGGTCAAAACAATACAACCA+GGG 0.689970 1_1:-54858230 None:intergenic
GGACCATGATTGGTGTGCAG+TGG 0.690358 1_1:+54859634 Msa0029550:CDS
CTTGCTTCCGAGTAAGCCGG+GGG 0.690508 1_1:-54857171 None:intergenic
TCGGAAGCAAGAGATAGCAG+TGG 0.695304 1_1:+54857183 Msa0029550:CDS
ATTGTGAATTGTGATTATGG+GGG 0.703425 1_1:+54853477 Msa0029550:exon
GTGAAGTGTTGAACTGAGAG+AGG 0.726800 1_1:-54853127 None:intergenic
GTCAACGGATCAATACTCCG+AGG 0.781576 1_1:+54858954 Msa0029550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAGTATGATTTTTTTA+AGG + chr1_1:54854983-54855002 Msa0029550:intron 10.0%
!! AATACAAAATTATTGAATAA+AGG - chr1_1:54855266-54855285 None:intergenic 10.0%
!!! TTTTGTATTAATTTTTATGT+AGG + chr1_1:54855277-54855296 Msa0029550:intron 10.0%
!!! AAATTTTATTTTTTTTTGAG+AGG - chr1_1:54855306-54855325 None:intergenic 10.0%
!! AAAAATTAACTGTTAAATAA+CGG - chr1_1:54857979-54857998 None:intergenic 10.0%
!!! TTTATTGTTGTTTTTGTTTT+GGG - chr1_1:54852969-54852988 None:intergenic 15.0%
!!! TTTTATTGTTGTTTTTGTTT+TGG - chr1_1:54852970-54852989 None:intergenic 15.0%
!! TAAAAAATTAAAGGATAACA+AGG - chr1_1:54854631-54854650 None:intergenic 15.0%
!! TAAATAGTTAAGGATATAAT+AGG + chr1_1:54854864-54854883 Msa0029550:intron 15.0%
!! AATTAACATTAATGTTTCAT+TGG + chr1_1:54854889-54854908 Msa0029550:intron 15.0%
!! AAAAAAAAAAAACCTATAAC+CGG - chr1_1:54855840-54855859 None:intergenic 15.0%
!!! TTTTTTTTATTGAGAAATGT+TGG + chr1_1:54855854-54855873 Msa0029550:intron 15.0%
!! AAATGTTGTCAATTATTATT+AGG - chr1_1:54856130-54856149 None:intergenic 15.0%
!! TAATAATAATTGACAACATT+TGG + chr1_1:54856129-54856148 Msa0029550:intron 15.0%
!! AATAATAATTGACAACATTT+GGG + chr1_1:54856130-54856149 Msa0029550:intron 15.0%
!!! CTTTCTTATTACTTTTTTTA+TGG + chr1_1:54858575-54858594 Msa0029550:intron 15.0%
!!! AACATATGTATTTTTTTTGT+GGG + chr1_1:54858844-54858863 Msa0029550:intron 15.0%
!! AAAAAAATTAACAAAACACA+AGG + chr1_1:54860496-54860515 Msa0029550:CDS 15.0%
!!! TTGTATTTTAAGCTAAGTTT+AGG + chr1_1:54853408-54853427 Msa0029550:five_prime_UTR 20.0%
!!! TGTATTTTAAGCTAAGTTTA+GGG + chr1_1:54853409-54853428 Msa0029550:five_prime_UTR 20.0%
!! TTAATTGTGAATTGTGATTA+TGG + chr1_1:54853474-54853493 Msa0029550:exon 20.0%
!! TAATTGTGAATTGTGATTAT+GGG + chr1_1:54853475-54853494 Msa0029550:exon 20.0%
!!! GCTGAAAATTATCATTTTTA+TGG + chr1_1:54853511-54853530 Msa0029550:CDS 20.0%
!!! AATTATCATTTTTATGGTGT+TGG + chr1_1:54853517-54853536 Msa0029550:CDS 20.0%
!!! TTCAGATATTGATTACATTT+TGG - chr1_1:54854174-54854193 None:intergenic 20.0%
!! TGAATAATCAGTGTAAAATT+AGG + chr1_1:54854406-54854425 Msa0029550:intron 20.0%
!! GAATAATCAGTGTAAAATTA+GGG + chr1_1:54854407-54854426 Msa0029550:intron 20.0%
!! ATTAAAAAACGAAAGAGTTT+GGG - chr1_1:54854553-54854572 None:intergenic 20.0%
!! AATTAAAAAACGAAAGAGTT+TGG - chr1_1:54854554-54854573 None:intergenic 20.0%
!!! ATTTATAACCTGATTTTGAT+GGG + chr1_1:54854673-54854692 Msa0029550:intron 20.0%
!! CGCATATAAAATTAATTACA+TGG - chr1_1:54854755-54854774 None:intergenic 20.0%
!! TAAAAATCCATCATGATATT+AGG - chr1_1:54855235-54855254 None:intergenic 20.0%
!!! CATTGATTAATATATAAGGT+TGG - chr1_1:54855966-54855985 None:intergenic 20.0%
!!! GCAACATTGATTAATATATA+AGG - chr1_1:54855970-54855989 None:intergenic 20.0%
!!! ACGGATTATTTTTATAACAA+CGG + chr1_1:54856666-54856685 Msa0029550:intron 20.0%
!! TTAAATTAATTATAGCTGAC+AGG + chr1_1:54856830-54856849 Msa0029550:intron 20.0%
!! AGTCAAATAATCTTAATCAT+GGG - chr1_1:54857523-54857542 None:intergenic 20.0%
!! AAGTCAAATAATCTTAATCA+TGG - chr1_1:54857524-54857543 None:intergenic 20.0%
!!! AGATTATTTGACTTCATTTA+TGG + chr1_1:54857530-54857549 Msa0029550:intron 20.0%
!!! CCTATTTCATTTTACTATTT+TGG - chr1_1:54857831-54857850 None:intergenic 20.0%
!! CCAAAATAGTAAAATGAAAT+AGG + chr1_1:54857828-54857847 Msa0029550:intron 20.0%
!! CAGAATAAACCAATAATTAT+TGG + chr1_1:54857871-54857890 Msa0029550:intron 20.0%
!! AACTATCAACCTTTATATAA+TGG + chr1_1:54858307-54858326 Msa0029550:intron 20.0%
!!! GAACATATGTATTTTTTTTG+TGG + chr1_1:54858843-54858862 Msa0029550:intron 20.0%
!! TGTAGCATAAAAGTAAAAAT+CGG - chr1_1:54859155-54859174 None:intergenic 20.0%
!! TTTGATGAAACTGTTAATAA+AGG + chr1_1:54859680-54859699 Msa0029550:CDS 20.0%
!!! ATCGACTTCTTATAATATTT+TGG + chr1_1:54860024-54860043 Msa0029550:intron 20.0%
!!! TTTATTTTGAGTCATCATAT+CGG + chr1_1:54860092-54860111 Msa0029550:intron 20.0%
!!! GAATTGCTCATAAATTTTAT+TGG + chr1_1:54860168-54860187 Msa0029550:intron 20.0%
!! TACATATTATTATCCTTCTA+TGG + chr1_1:54860961-54860980 Msa0029550:three_prime_UTR 20.0%
!!! TTGTTAAAACTCAATTTGTT+AGG + chr1_1:54861034-54861053 Msa0029550:three_prime_UTR 20.0%
!! TATTTGGATATAATATTCAG+TGG + chr1_1:54861073-54861092 Msa0029550:three_prime_UTR 20.0%
!! TGGTCATAATTAAAAAAAAC+AGG - chr1_1:54861103-54861122 None:intergenic 20.0%
!!! TAGTTGTTGATTTGTGAAAT+TGG + chr1_1:54853236-54853255 Msa0029550:five_prime_UTR 25.0%
! AATTGTGAATTGTGATTATG+GGG + chr1_1:54853476-54853495 Msa0029550:exon 25.0%
!!! ATATTGATTACATTTTGGAG+CGG - chr1_1:54854169-54854188 None:intergenic 25.0%
!! CATTTATAACCTGATTTTGA+TGG + chr1_1:54854672-54854691 Msa0029550:intron 25.0%
! ACAAAATTGCCCTTAATAAA+TGG + chr1_1:54854798-54854817 Msa0029550:intron 25.0%
! TTTGCCATACCATTTATTAA+GGG - chr1_1:54854810-54854829 None:intergenic 25.0%
!! TTTTGCCATACCATTTATTA+AGG - chr1_1:54854811-54854830 None:intergenic 25.0%
! GAGAGAGTAATAAATAGTTA+AGG + chr1_1:54854854-54854873 Msa0029550:intron 25.0%
! TTGTAAAGCGACATATAATT+TGG + chr1_1:54854914-54854933 Msa0029550:intron 25.0%
! TGTAAAGCGACATATAATTT+GGG + chr1_1:54854915-54854934 Msa0029550:intron 25.0%
! GAGTATTTATTGTATCTTGT+TGG + chr1_1:54855057-54855076 Msa0029550:intron 25.0%
!! AGTTTGCTTAGTTATAAATC+TGG + chr1_1:54855711-54855730 Msa0029550:intron 25.0%
!!! AATATATAAGGTTGGTTTGA+TGG - chr1_1:54855958-54855977 None:intergenic 25.0%
!!! TTTCCAATAGTGTATTTTTG+GGG - chr1_1:54856058-54856077 None:intergenic 25.0%
!! GTTTCCAATAGTGTATTTTT+GGG - chr1_1:54856059-54856078 None:intergenic 25.0%
! AGCTTGTATATATGACAATT+AGG + chr1_1:54856285-54856304 Msa0029550:intron 25.0%
!! TCTTCATCTTTTTATTATGC+TGG + chr1_1:54856402-54856421 Msa0029550:intron 25.0%
! TTATTATGCTGGCATTAAAT+TGG + chr1_1:54856413-54856432 Msa0029550:intron 25.0%
!!! CGGATTATTTTTATAACAAC+GGG + chr1_1:54856667-54856686 Msa0029550:intron 25.0%
!!! GGATTATTTTTATAACAACG+GGG + chr1_1:54856668-54856687 Msa0029550:intron 25.0%
! CACTTATTTATTGCATCATA+TGG + chr1_1:54856691-54856710 Msa0029550:intron 25.0%
! ATAACATAGATAGCAATCAA+AGG - chr1_1:54856772-54856791 None:intergenic 25.0%
! ATCTATTAACTCATCTTCTA+AGG + chr1_1:54856875-54856894 Msa0029550:CDS 25.0%
!!! TTTGCTGTACTATTTTGAAT+TGG + chr1_1:54857438-54857457 Msa0029550:intron 25.0%
! GTCAAATAATCTTAATCATG+GGG - chr1_1:54857522-54857541 None:intergenic 25.0%
! GAGTTTGATCAAACATTAAA+CGG - chr1_1:54857798-54857817 None:intergenic 25.0%
!!! TTTCATTTTACTATTTTGGC+AGG - chr1_1:54857827-54857846 None:intergenic 25.0%
! GTAAAATGAAATAGGATCTT+TGG + chr1_1:54857836-54857855 Msa0029550:intron 25.0%
! CGAAGAGTTTAAAAACAATT+CGG - chr1_1:54858029-54858048 None:intergenic 25.0%
!!! CGAATTGTTTTTAAACTCTT+CGG + chr1_1:54858027-54858046 Msa0029550:CDS 25.0%
!! TTTGAAATTTAATCACATCG+AGG + chr1_1:54858143-54858162 Msa0029550:intron 25.0%
! TTGAAATTTAATCACATCGA+GGG + chr1_1:54858144-54858163 Msa0029550:intron 25.0%
!!! TAAAGGTTGATAGTTTTAGA+AGG - chr1_1:54858302-54858321 None:intergenic 25.0%
! TATCAACCTTTATATAATGG+CGG + chr1_1:54858310-54858329 Msa0029550:intron 25.0%
! AAATAACCGCCATTATATAA+AGG - chr1_1:54858319-54858338 None:intergenic 25.0%
!!! TATTACTTTTTTTATGGTGC+AGG + chr1_1:54858581-54858600 Msa0029550:intron 25.0%
!!! TTTTGCTATAATTGTTGCTT+CGG - chr1_1:54858637-54858656 None:intergenic 25.0%
! GCAACAATTATAGCAAAATT+TGG + chr1_1:54858639-54858658 Msa0029550:CDS 25.0%
!!! TGCAAATTTTTTAAGTGACT+TGG + chr1_1:54858802-54858821 Msa0029550:intron 25.0%
! TAAACAGAAAAAAGTAGTCA+GGG + chr1_1:54859074-54859093 Msa0029550:intron 25.0%
! GTAGCATAAAAGTAAAAATC+GGG - chr1_1:54859154-54859173 None:intergenic 25.0%
!!! TTTTTTGATTTGCTAGATTG+AGG + chr1_1:54859334-54859353 Msa0029550:intron 25.0%
! TATGGATTTCATTCATGAAA+TGG + chr1_1:54859505-54859524 Msa0029550:CDS 25.0%
! ATGGATTTCATTCATGAAAT+GGG + chr1_1:54859506-54859525 Msa0029550:CDS 25.0%
! TAACCATCCTATATTTCAAT+TGG - chr1_1:54859550-54859569 None:intergenic 25.0%
! ATTACCAAAAGCCAAAATAA+GGG - chr1_1:54860317-54860336 None:intergenic 25.0%
!!! AGTAACACAATTTTGATTAC+AGG + chr1_1:54860372-54860391 Msa0029550:intron 25.0%
! CTAAGTGAATGTAAGTATAA+TGG - chr1_1:54860471-54860490 None:intergenic 25.0%
! TGCAACTAATAAAACTTGAT+AGG + chr1_1:54860850-54860869 Msa0029550:three_prime_UTR 25.0%
!!! ACAAATTGAGTTTTAACAAG+AGG - chr1_1:54861033-54861052 None:intergenic 25.0%
TGTGATGGTATATTCTGTTA+TGG - chr1_1:54852935-54852954 None:intergenic 30.0%
! ATGATGACGAAGAAGAATTA+CGG - chr1_1:54853004-54853023 None:intergenic 30.0%
TACTGTTGTACTTGATTATG+TGG + chr1_1:54853282-54853301 Msa0029550:five_prime_UTR 30.0%
! TTATGTGGATTGCTCTTAAT+TGG + chr1_1:54853297-54853316 Msa0029550:five_prime_UTR 30.0%
ATTGTGAATTGTGATTATGG+GGG + chr1_1:54853477-54853496 Msa0029550:exon 30.0%
!! TATCATTTTTATGGTGTTGG+TGG + chr1_1:54853520-54853539 Msa0029550:CDS 30.0%
GAATTTGAATGATTGGAGAT+GGG + chr1_1:54853585-54853604 Msa0029550:CDS 30.0%
AACAGAAAGCAATCAATAAG+AGG - chr1_1:54854085-54854104 None:intergenic 30.0%
!!! ATTGCTTTCTGTTTTTGCTT+TGG + chr1_1:54854092-54854111 Msa0029550:intron 30.0%
!! GTTGATAGTTATGTGTGTAT+AGG + chr1_1:54854114-54854133 Msa0029550:intron 30.0%
CTGAAAATCTATGTTGTTGA+TGG + chr1_1:54854189-54854208 Msa0029550:intron 30.0%
TTATATAGAGAGATCTCACA+TGG - chr1_1:54854334-54854353 None:intergenic 30.0%
AAAATTGGGTTTGTCTAACT+GGG + chr1_1:54854464-54854483 Msa0029550:intron 30.0%
ATTAAAGGATAACAAGGACT+TGG - chr1_1:54854625-54854644 None:intergenic 30.0%
ATTGCCCTTAATAAATGGTA+TGG + chr1_1:54854803-54854822 Msa0029550:intron 30.0%
TTTCCAAAGCGACATATAAT+TGG + chr1_1:54854949-54854968 Msa0029550:intron 30.0%
TTCCAAAGCGACATATAATT+GGG + chr1_1:54854950-54854969 Msa0029550:intron 30.0%
TAAAATATGCTACAGCAGTA+TGG - chr1_1:54855141-54855160 None:intergenic 30.0%
! ATACTGCTGTAGCATATTTT+AGG + chr1_1:54855140-54855159 Msa0029550:intron 30.0%
!!! ATATTTTAGGTTTGGTGCTA+TGG + chr1_1:54855153-54855172 Msa0029550:intron 30.0%
!!! TATTTTAGGTTTGGTGCTAT+GGG + chr1_1:54855154-54855173 Msa0029550:intron 30.0%
!! GCTAACTTGTTAATAACAGA+TGG - chr1_1:54855183-54855202 None:intergenic 30.0%
AATACTGCCTAATATCATGA+TGG + chr1_1:54855225-54855244 Msa0029550:intron 30.0%
!! ATCGCAGTTGTATTTTTAAC+TGG + chr1_1:54855736-54855755 Msa0029550:intron 30.0%
GTATGTTAGTGTTATGTTGT+TGG + chr1_1:54855876-54855895 Msa0029550:intron 30.0%
!!! TTCCAATAGTGTATTTTTGG+GGG - chr1_1:54856057-54856076 None:intergenic 30.0%
! CGTTTCCAATAGTGTATTTT+TGG - chr1_1:54856060-54856079 None:intergenic 30.0%
TATGGGGGTTACAATATTAA+TGG + chr1_1:54856470-54856489 Msa0029550:intron 30.0%
ATGGGGGTTACAATATTAAT+GGG + chr1_1:54856471-54856490 Msa0029550:intron 30.0%
! GAAACATGCGTATTCTAAAA+AGG - chr1_1:54856552-54856571 None:intergenic 30.0%
!! TTGACATGCAATCGATTTTT+AGG + chr1_1:54856577-54856596 Msa0029550:intron 30.0%
CAAGCTTATGATTTATGAGA+CGG + chr1_1:54856647-54856666 Msa0029550:intron 30.0%
ATATGGCAATGATGACATTT+GGG + chr1_1:54856708-54856727 Msa0029550:intron 30.0%
AATTCTCTTGTTCTCGTAAA+AGG - chr1_1:54856948-54856967 None:intergenic 30.0%
!! AAGAGAATTTGTTGAGAGAA+GGG + chr1_1:54856959-54856978 Msa0029550:CDS 30.0%
TGATGTTGTGTTATAACAGT+TGG - chr1_1:54857045-54857064 None:intergenic 30.0%
GAATCAAATGCAACAAGAAA+TGG + chr1_1:54857077-54857096 Msa0029550:CDS 30.0%
!! ATATATGTTGACTCAGATGA+TGG + chr1_1:54857240-54857259 Msa0029550:CDS 30.0%
TTGACTTCATTTATGGATAG+AGG + chr1_1:54857537-54857556 Msa0029550:intron 30.0%
AAATGAAATAGGATCTTTGG+TGG + chr1_1:54857839-54857858 Msa0029550:intron 30.0%
AGTACAAGAGGAAATTCATT+TGG - chr1_1:54858060-54858079 None:intergenic 30.0%
! CAAATGGCATTCATTTTCAA+CGG + chr1_1:54858487-54858506 Msa0029550:CDS 30.0%
! TGTCTCTGTTGTTATTCTTA+TGG + chr1_1:54858520-54858539 Msa0029550:intron 30.0%
! AGAGCTCAATTTTCTGTTAA+AGG + chr1_1:54858695-54858714 Msa0029550:CDS 30.0%
ATTTAACTACCAACATGCAA+AGG - chr1_1:54858778-54858797 None:intergenic 30.0%
ATGTTCAAACAAAATCCAGT+AGG - chr1_1:54858829-54858848 None:intergenic 30.0%
!! TGCTTTAGAAGGAAAATATC+TGG + chr1_1:54858912-54858931 Msa0029550:CDS 30.0%
AAATGGAAGAGGATTTATTG+AGG + chr1_1:54859026-54859045 Msa0029550:CDS 30.0%
GTAAACAGAAAAAAGTAGTC+AGG + chr1_1:54859073-54859092 Msa0029550:intron 30.0%
AAACAGAAAAAAGTAGTCAG+GGG + chr1_1:54859075-54859094 Msa0029550:intron 30.0%
CTAGTTATTACTCAATGAGA+GGG + chr1_1:54859105-54859124 Msa0029550:intron 30.0%
TAGTTATTACTCAATGAGAG+GGG + chr1_1:54859106-54859125 Msa0029550:intron 30.0%
TTATGCTACATTTCAACACA+CGG + chr1_1:54859165-54859184 Msa0029550:intron 30.0%
TAAAAGACAGCTTATGAGTT+AGG - chr1_1:54859217-54859236 None:intergenic 30.0%
CAGTAAAAATAATGACACAC+TGG - chr1_1:54859259-54859278 None:intergenic 30.0%
AAACTGATCCAGATATTGAA+GGG + chr1_1:54859453-54859472 Msa0029550:CDS 30.0%
ACAGAAGCCAATTGAAATAT+AGG + chr1_1:54859540-54859559 Msa0029550:CDS 30.0%
AAGCCAATTGAAATATAGGA+TGG + chr1_1:54859544-54859563 Msa0029550:CDS 30.0%
TAGATCTCTTTCCATTAGAA+CGG + chr1_1:54859585-54859604 Msa0029550:CDS 30.0%
TAACAGTTTCATCAAAGAGT+AGG - chr1_1:54859676-54859695 None:intergenic 30.0%
! AAAGTGCTTGATACAATGTA+GGG - chr1_1:54859712-54859731 None:intergenic 30.0%
! AGTAGAAATTTTACCATGCA+AGG - chr1_1:54859980-54859999 None:intergenic 30.0%
TCTTGTAGTGATATAAGTCA+AGG - chr1_1:54860004-54860023 None:intergenic 30.0%
TTACCAAAAGCCAAAATAAG+GGG - chr1_1:54860316-54860335 None:intergenic 30.0%
GATTACCAAAAGCCAAAATA+AGG - chr1_1:54860318-54860337 None:intergenic 30.0%
!!! AACACAATTTTGATTACAGG+TGG + chr1_1:54860375-54860394 Msa0029550:intron 30.0%
!!! ACACAATTTTGATTACAGGT+GGG + chr1_1:54860376-54860395 Msa0029550:intron 30.0%
! TGCAGTTCTACAAGAAATTT+TGG - chr1_1:54860662-54860681 None:intergenic 30.0%
AAAACTTGATAGGTCATGTA+TGG + chr1_1:54860860-54860879 Msa0029550:three_prime_UTR 30.0%
AGGATAATAATGTCCATAGA+AGG - chr1_1:54860977-54860996 None:intergenic 30.0%
TGGACATTATTATCCTTCTA+TGG + chr1_1:54860981-54861000 Msa0029550:three_prime_UTR 30.0%
ATCCTTCGTACTGTAATATT+TGG + chr1_1:54861057-54861076 Msa0029550:three_prime_UTR 30.0%
ATCCAAATATTACAGTACGA+AGG - chr1_1:54861062-54861081 None:intergenic 30.0%
!!! TTTTGTTTTGGGAGAGACAA+CGG - chr1_1:54852958-54852977 None:intergenic 35.0%
CAAATGGAGAAGATGTTATG+TGG - chr1_1:54853051-54853070 None:intergenic 35.0%
AGGTTGAAAGGAAAGTAGAT+CGG - chr1_1:54853090-54853109 None:intergenic 35.0%
ATTGCTCTTAATTGGAACCA+TGG + chr1_1:54853305-54853324 Msa0029550:five_prime_UTR 35.0%
! AACAATCCAAAAAGAGCACA+CGG - chr1_1:54853337-54853356 None:intergenic 35.0%
! TGTGCTCTTTTTGGATTGTT+GGG + chr1_1:54853337-54853356 Msa0029550:five_prime_UTR 35.0%
AGGGTTAATTGTTTGTGTTG+AGG + chr1_1:54853428-54853447 Msa0029550:five_prime_UTR 35.0%
GGGAATGGAATTTGAATGAT+TGG + chr1_1:54853578-54853597 Msa0029550:CDS 35.0%
GGAATTTGAATGATTGGAGA+TGG + chr1_1:54853584-54853603 Msa0029550:CDS 35.0%
AGATCTTGAGAAAGGGAATA+AGG + chr1_1:54853750-54853769 Msa0029550:CDS 35.0%
TTGAGAAAGGGAATAAGGAA+GGG + chr1_1:54853755-54853774 Msa0029550:CDS 35.0%
AGTTTGTGAGATGCATTCTA+AGG + chr1_1:54853993-54854012 Msa0029550:CDS 35.0%
CAAAATTGGGTTTGTCTAAC+TGG + chr1_1:54854463-54854482 Msa0029550:intron 35.0%
!! TAACCTGATTTTGATGGGAA+AGG + chr1_1:54854678-54854697 Msa0029550:intron 35.0%
AAACGTCAGATAATTTGGGA+CGG - chr1_1:54854729-54854748 None:intergenic 35.0%
! TCCCAAATTATCTGACGTTT+TGG + chr1_1:54854729-54854748 Msa0029550:intron 35.0%
GCCAAAACGTCAGATAATTT+GGG - chr1_1:54854733-54854752 None:intergenic 35.0%
AAAGCGACATATAATTGGGA+CGG + chr1_1:54854954-54854973 Msa0029550:intron 35.0%
!!! GCTGTAGCATATTTTAGGTT+TGG + chr1_1:54855145-54855164 Msa0029550:intron 35.0%
AGTATGTGAAACCTGTTGAT+GGG - chr1_1:54855380-54855399 None:intergenic 35.0%
AAGTATGTGAAACCTGTTGA+TGG - chr1_1:54855381-54855400 None:intergenic 35.0%
ATACTTCAAGAGTTCGATGA+AGG + chr1_1:54855395-54855414 Msa0029550:CDS 35.0%
!! TTTTCCTTCTCCGTTTGTTA+TGG - chr1_1:54855451-54855470 None:intergenic 35.0%
AATCAAGAAGCTGTTCCTAA+TGG + chr1_1:54855473-54855492 Msa0029550:CDS 35.0%
! TCATTTGTTGGACTTCCATT+AGG - chr1_1:54855491-54855510 None:intergenic 35.0%
CTAGTCTGATCATCATTTGT+TGG - chr1_1:54855503-54855522 None:intergenic 35.0%
CATTTCAAACCAATTCCTCT+AGG - chr1_1:54855619-54855638 None:intergenic 35.0%
!! AGAGGAATTGGTTTGAAATG+AGG + chr1_1:54855619-54855638 Msa0029550:intron 35.0%
AGACAAACTACTATACCAAC+AGG - chr1_1:54855801-54855820 None:intergenic 35.0%
! AGTTTGTCTGTGTTTTCACA+TGG + chr1_1:54855812-54855831 Msa0029550:intron 35.0%
GTTAGTGTTATGTTGTTGGT+AGG + chr1_1:54855880-54855899 Msa0029550:intron 35.0%
!!! TTTTCTAAGGTGGGACTTAA+AGG - chr1_1:54856156-54856175 None:intergenic 35.0%
!!! CTCTCTGTTTTTTCTAAGGT+GGG - chr1_1:54856165-54856184 None:intergenic 35.0%
CAATTAGGCATAAGACACAA+AGG + chr1_1:54856300-54856319 Msa0029550:intron 35.0%
AAGACACAAAGGAACTTTGA+TGG + chr1_1:54856311-54856330 Msa0029550:intron 35.0%
AGACACAAAGGAACTTTGAT+GGG + chr1_1:54856312-54856331 Msa0029550:intron 35.0%
ATGGGAGCTTATGTTGAAAA+TGG + chr1_1:54856489-54856508 Msa0029550:intron 35.0%
CATATGGCAATGATGACATT+TGG + chr1_1:54856707-54856726 Msa0029550:intron 35.0%
!! TCTATGTTATGAGTTTGCTG+AGG + chr1_1:54856782-54856801 Msa0029550:intron 35.0%
GTTAATAGATCCTGATCTGT+AGG - chr1_1:54856865-54856884 None:intergenic 35.0%
CAAGTCAGAATGATGAACAA+GGG + chr1_1:54856905-54856924 Msa0029550:CDS 35.0%
!! CAAGAGAATTTGTTGAGAGA+AGG + chr1_1:54856958-54856977 Msa0029550:CDS 35.0%
!! AGAGAATTTGTTGAGAGAAG+GGG + chr1_1:54856960-54856979 Msa0029550:CDS 35.0%
TTCTTCAAGAAATTCAGGGA+TGG + chr1_1:54856984-54857003 Msa0029550:CDS 35.0%
!! GTATCAGCTTTATTCTCCAA+TGG + chr1_1:54857006-54857025 Msa0029550:CDS 35.0%
TTTATTCTCCAATGGTTCTC+AGG + chr1_1:54857014-54857033 Msa0029550:CDS 35.0%
TTATTCTCCAATGGTTCTCA+GGG + chr1_1:54857015-54857034 Msa0029550:CDS 35.0%
!! AGATATGAGTTGATGATCAG+AGG - chr1_1:54857124-54857143 None:intergenic 35.0%
AGTAGCAAGATTTGTAGAGA+CGG - chr1_1:54857289-54857308 None:intergenic 35.0%
TCTGAATTTCCACTTGTTTG+AGG - chr1_1:54857363-54857382 None:intergenic 35.0%
TACAGCAAACAAACATACCT+GGG - chr1_1:54857427-54857446 None:intergenic 35.0%
TTATGGATAGAGGATGTTTC+TGG + chr1_1:54857547-54857566 Msa0029550:intron 35.0%
!! TTGCTGGTTCTTTAACTTAC+CGG + chr1_1:54857597-54857616 Msa0029550:intron 35.0%
! GTGGTGTTTTACATGTTTTG+TGG + chr1_1:54857627-54857646 Msa0029550:intron 35.0%
GCATAGAAATCATGCAAACA+GGG - chr1_1:54857715-54857734 None:intergenic 35.0%
AGCATAGAAATCATGCAAAC+AGG - chr1_1:54857716-54857735 None:intergenic 35.0%
TATTTCCCCATTTCTAACCA+TGG + chr1_1:54857898-54857917 Msa0029550:intron 35.0%
AAACAGCCATGGTTAGAAAT+GGG - chr1_1:54857907-54857926 None:intergenic 35.0%
TAAACAGCCATGGTTAGAAA+TGG - chr1_1:54857908-54857927 None:intergenic 35.0%
ATTTCTAACCATGGCTGTTT+AGG + chr1_1:54857907-54857926 Msa0029550:intron 35.0%
TCAATTGGCAGATTCTAGAT+TGG + chr1_1:54858169-54858188 Msa0029550:intron 35.0%
ATGTAGCTCTCAATATCAGT+AGG - chr1_1:54858207-54858226 None:intergenic 35.0%
TGGTCAAAACAATACAACCA+GGG - chr1_1:54858233-54858252 None:intergenic 35.0%
ATGGTCAAAACAATACAACC+AGG - chr1_1:54858234-54858253 None:intergenic 35.0%
! ATGTCTCAGATGATACGTTT+TGG + chr1_1:54858431-54858450 Msa0029550:CDS 35.0%
!!! GATGATACGTTTTGGAAAAC+TGG + chr1_1:54858439-54858458 Msa0029550:CDS 35.0%
!!! ATACGTTTTGGAAAACTGGA+TGG + chr1_1:54858443-54858462 Msa0029550:CDS 35.0%
!!! TACGTTTTGGAAAACTGGAT+GGG + chr1_1:54858444-54858463 Msa0029550:CDS 35.0%
TATCAGAGTGCAACATCAAA+TGG + chr1_1:54858471-54858490 Msa0029550:CDS 35.0%
! CTATAATTGTTGCTTCGGAA+AGG - chr1_1:54858632-54858651 None:intergenic 35.0%
TAACCTAAGGACAAGTTTGA+GGG - chr1_1:54858887-54858906 None:intergenic 35.0%
TTAACCTAAGGACAAGTTTG+AGG - chr1_1:54858888-54858907 None:intergenic 35.0%
CTAAAGCACACATTAACCTA+AGG - chr1_1:54858900-54858919 None:intergenic 35.0%
! AGGTTAATGTGTGCTTTAGA+AGG + chr1_1:54858901-54858920 Msa0029550:intron 35.0%
CAGGTACAGAACATGAAAAT+TGG - chr1_1:54859002-54859021 None:intergenic 35.0%
GCTAGTTATTACTCAATGAG+AGG + chr1_1:54859104-54859123 Msa0029550:intron 35.0%
AGTTATTACTCAATGAGAGG+GGG + chr1_1:54859107-54859126 Msa0029550:intron 35.0%
GTTTCACTTGATTCTAGTAG+AGG - chr1_1:54859437-54859456 None:intergenic 35.0%
GAAACTGATCCAGATATTGA+AGG + chr1_1:54859452-54859471 Msa0029550:CDS 35.0%
TAAAGCCAAAAGTCAAGCTA+TGG + chr1_1:54859487-54859506 Msa0029550:CDS 35.0%
! GAAATCCATAGCTTGACTTT+TGG - chr1_1:54859495-54859514 None:intergenic 35.0%
ATTTCATTCATGAAATGGGC+TGG + chr1_1:54859510-54859529 Msa0029550:CDS 35.0%
! ATGGCTTATGGAGTTTTCAA+TGG + chr1_1:54859613-54859632 Msa0029550:CDS 35.0%
! AGTTTTCAATGGACCATGAT+TGG + chr1_1:54859624-54859643 Msa0029550:CDS 35.0%
!! GAAAGTGCTTGATACAATGT+AGG - chr1_1:54859713-54859732 None:intergenic 35.0%
GAGAAATAGCAAACAGTTAG+TGG + chr1_1:54859763-54859782 Msa0029550:CDS 35.0%
AGTTCATCAGATGTATTGTC+AGG - chr1_1:54859809-54859828 None:intergenic 35.0%
GACAATACATCTGATGAACT+AGG + chr1_1:54859809-54859828 Msa0029550:CDS 35.0%
! TATATGAAGTGGTGTCAAAC+CGG - chr1_1:54859906-54859925 None:intergenic 35.0%
GAATTGTACCAGTTAAAAGC+AGG - chr1_1:54860121-54860140 None:intergenic 35.0%
TCACTAGCAGTATATAAGTG+TGG - chr1_1:54860143-54860162 None:intergenic 35.0%
ACAATATCAGTGACCAAAGT+AGG - chr1_1:54860224-54860243 None:intergenic 35.0%
CTTTGGTCACTGATATTGTT+TGG + chr1_1:54860225-54860244 Msa0029550:intron 35.0%
TACCAAAAGCCAAAATAAGG+GGG - chr1_1:54860315-54860334 None:intergenic 35.0%
! TGAATGACTCATTTTGCTTC+GGG - chr1_1:54860576-54860595 None:intergenic 35.0%
! GTGAATGACTCATTTTGCTT+CGG - chr1_1:54860577-54860596 None:intergenic 35.0%
! TCATTCACTAGCTTAGAGAT+TGG + chr1_1:54860589-54860608 Msa0029550:CDS 35.0%
ATTTCTTGTAGAACTGCAGT+AGG + chr1_1:54860664-54860683 Msa0029550:CDS 35.0%
TCGGAACATGTATAGAACTT+CGG - chr1_1:54860779-54860798 None:intergenic 35.0%
GTTCATAAACTAAATGACCG+AGG + chr1_1:54860887-54860906 Msa0029550:three_prime_UTR 35.0%
AAACTAAATGACCGAGGTTT+AGG + chr1_1:54860893-54860912 Msa0029550:three_prime_UTR 35.0%
CTGGTTGTGTTTCTTTGTAT+TGG + chr1_1:54860917-54860936 Msa0029550:three_prime_UTR 35.0%
TGTACAAGTATGTCCATAGA+AGG - chr1_1:54860997-54861016 None:intergenic 35.0%
CTATGGACATACTTGTACAA+TGG + chr1_1:54860998-54861017 Msa0029550:three_prime_UTR 35.0%
AGATGTTATGTGGACGGAAA+CGG - chr1_1:54853041-54853060 None:intergenic 40.0%
TGGAGAAGATGTTATGTGGA+CGG - chr1_1:54853047-54853066 None:intergenic 40.0%
! GTGTGCTCTTTTTGGATTGT+TGG + chr1_1:54853336-54853355 Msa0029550:five_prime_UTR 40.0%
! GTGCTCTTTTTGGATTGTTG+GGG + chr1_1:54853338-54853357 Msa0029550:five_prime_UTR 40.0%
GGATTGTTGGGGATGAATTA+AGG + chr1_1:54853349-54853368 Msa0029550:five_prime_UTR 40.0%
GAATTGTGATTATGGGGGAA+AGG + chr1_1:54853482-54853501 Msa0029550:exon 40.0%
! GTGGTTCATCTGATTTGAGT+GGG + chr1_1:54853539-54853558 Msa0029550:CDS 40.0%
! TTCATCTGATTTGAGTGGGA+TGG + chr1_1:54853543-54853562 Msa0029550:CDS 40.0%
! TCATCTGATTTGAGTGGGAT+GGG + chr1_1:54853544-54853563 Msa0029550:CDS 40.0%
TTGAATGATTGGAGATGGGA+TGG + chr1_1:54853589-54853608 Msa0029550:CDS 40.0%
TTTCTCAAGATCTCCTTCCT+CGG - chr1_1:54853743-54853762 None:intergenic 40.0%
AGGAAGGAGATCTTGAGAAA+GGG + chr1_1:54853743-54853762 Msa0029550:CDS 40.0%
CTTGAGAAAGGGAATAAGGA+AGG + chr1_1:54853754-54853773 Msa0029550:CDS 40.0%
TGAGAAAGGGAATAAGGAAG+GGG + chr1_1:54853756-54853775 Msa0029550:CDS 40.0%
ATAAGGAAGGGGATAGGAAA+AGG + chr1_1:54853767-54853786 Msa0029550:CDS 40.0%
GAAAAGGAGAGTTATTGTGC+TGG + chr1_1:54853783-54853802 Msa0029550:CDS 40.0%
GTTATTGTGCTGGAAGATGA+TGG + chr1_1:54853793-54853812 Msa0029550:CDS 40.0%
GATGGTTTGAATGATGAAGC+TGG + chr1_1:54853811-54853830 Msa0029550:CDS 40.0%
GCACTTAGCTTAAATCTTGC+AGG + chr1_1:54853835-54853854 Msa0029550:CDS 40.0%
!! AGATGCATTCTAAGGCTAGT+AGG + chr1_1:54854001-54854020 Msa0029550:CDS 40.0%
!! GATGCATTCTAAGGCTAGTA+GGG + chr1_1:54854002-54854021 Msa0029550:CDS 40.0%
!! GGTTTTGTCAACAGTGTAGT+AGG + chr1_1:54854049-54854068 Msa0029550:CDS 40.0%
CATGGCAAACTTTCGAACAA+TGG - chr1_1:54854316-54854335 None:intergenic 40.0%
! AGCGAGCATAGTTTGTATGT+CGG - chr1_1:54854384-54854403 None:intergenic 40.0%
! ACAAACCCAATTTTGCACCA+GGG - chr1_1:54854458-54854477 None:intergenic 40.0%
TAACCCTCCTCAGGAAAAAT+GGG - chr1_1:54854511-54854530 None:intergenic 40.0%
ATAACCCTCCTCAGGAAAAA+TGG - chr1_1:54854512-54854531 None:intergenic 40.0%
! TTTTTCCTGAGGAGGGTTAT+TGG + chr1_1:54854512-54854531 Msa0029550:intron 40.0%
TGTCCTTTCCCATCAAAATC+AGG - chr1_1:54854684-54854703 None:intergenic 40.0%
GGCCAAAACGTCAGATAATT+TGG - chr1_1:54854734-54854753 None:intergenic 40.0%
! GTCCCAATTATATGTCGCTT+TGG - chr1_1:54854955-54854974 None:intergenic 40.0%
AATATGCTACAGCAGTATGG+CGG - chr1_1:54855138-54855157 None:intergenic 40.0%
! CATTCTTTTACCCCATCAAC+AGG + chr1_1:54855366-54855385 Msa0029550:intron 40.0%
GTATGTGAAACCTGTTGATG+GGG - chr1_1:54855379-54855398 None:intergenic 40.0%
TCTTTGCAACTATAGCCTAG+AGG + chr1_1:54855601-54855620 Msa0029550:intron 40.0%
CAACTATAGCCTAGAGGAAT+TGG + chr1_1:54855607-54855626 Msa0029550:intron 40.0%
CCAAAGGATCAGTTATGTAC+AGG - chr1_1:54855676-54855695 None:intergenic 40.0%
CCTGTACATAACTGATCCTT+TGG + chr1_1:54855673-54855692 Msa0029550:intron 40.0%
TAACTTCCTGTAGCTACCAA+AGG - chr1_1:54855692-54855711 None:intergenic 40.0%
! TCTGTGTTTTCACATGGAAC+CGG + chr1_1:54855818-54855837 Msa0029550:intron 40.0%
TTTCACATGGAACCGGTTAT+AGG + chr1_1:54855825-54855844 Msa0029550:intron 40.0%
AGTTAAGGAGTGGAGTGATA+AGG - chr1_1:54855923-54855942 None:intergenic 40.0%
!! TAAGGTTGGTTTGATGGTTG+AGG - chr1_1:54855952-54855971 None:intergenic 40.0%
AGCCCCCAAAAATACACTAT+TGG + chr1_1:54856052-54856071 Msa0029550:intron 40.0%
!!! CCTCTCTGTTTTTTCTAAGG+TGG - chr1_1:54856166-54856185 None:intergenic 40.0%
CCACCTTAGAAAAAACAGAG+AGG + chr1_1:54856163-54856182 Msa0029550:intron 40.0%
!!! GTGCCTCTCTGTTTTTTCTA+AGG - chr1_1:54856169-54856188 None:intergenic 40.0%
ATCGAGAGTCTAAGCAAGAT+CGG - chr1_1:54856235-54856254 None:intergenic 40.0%
TGGTCTGAGAAATCAACAAC+TGG + chr1_1:54856433-54856452 Msa0029550:intron 40.0%
! TGGCCTCTAAAGAAGGATAT+GGG + chr1_1:54856453-54856472 Msa0029550:intron 40.0%
!!! GAGTTTGCTGAGGTTTTCTT+TGG + chr1_1:54856792-54856811 Msa0029550:intron 40.0%
! TTGCTGAGGTTTTCTTTGGA+TGG + chr1_1:54856796-54856815 Msa0029550:intron 40.0%
! TGCTGAGGTTTTCTTTGGAT+GGG + chr1_1:54856797-54856816 Msa0029550:intron 40.0%
GCAAGTCAGAATGATGAACA+AGG + chr1_1:54856904-54856923 Msa0029550:CDS 40.0%
!! GAGAATTTGTTGAGAGAAGG+GGG + chr1_1:54856961-54856980 Msa0029550:CDS 40.0%
GGGGTTCTTCAAGAAATTCA+GGG + chr1_1:54856980-54856999 Msa0029550:CDS 40.0%
TATTCTCCAATGGTTCTCAG+GGG + chr1_1:54857016-54857035 Msa0029550:CDS 40.0%
!! TGTTGACTCAGATGATGGAA+CGG + chr1_1:54857245-54857264 Msa0029550:CDS 40.0%
GTAGCAAGATTTGTAGAGAC+GGG - chr1_1:54857288-54857307 None:intergenic 40.0%
! GAGAATCTTGTTGTGTCCAA+GGG - chr1_1:54857326-54857345 None:intergenic 40.0%
! TGAGAATCTTGTTGTGTCCA+AGG - chr1_1:54857327-54857346 None:intergenic 40.0%
GAATTTCCACTTGTTTGAGG+TGG - chr1_1:54857360-54857379 None:intergenic 40.0%
GTACAGCAAACAAACATACC+TGG - chr1_1:54857428-54857447 None:intergenic 40.0%
GTACCATCTTTGCACTCAAA+TGG + chr1_1:54857481-54857500 Msa0029550:intron 40.0%
CTTCCATTTGAGTGCAAAGA+TGG - chr1_1:54857487-54857506 None:intergenic 40.0%
!! TGTTTCTGGTAACCCTCATA+AGG + chr1_1:54857561-54857580 Msa0029550:intron 40.0%
CATCACACATTGCCTTATGA+GGG - chr1_1:54857576-54857595 None:intergenic 40.0%
ACATCACACATTGCCTTATG+AGG - chr1_1:54857577-54857596 None:intergenic 40.0%
TTAACTTACCGGTGAAGTTG+TGG + chr1_1:54857608-54857627 Msa0029550:intron 40.0%
GTAAAACACCACAACTTCAC+CGG - chr1_1:54857619-54857638 None:intergenic 40.0%
TACAGTCACGACAAAAAGGT+GGG - chr1_1:54857655-54857674 None:intergenic 40.0%
TTACAGTCACGACAAAAAGG+TGG - chr1_1:54857656-54857675 None:intergenic 40.0%
TCGTTACAGTCACGACAAAA+AGG - chr1_1:54857659-54857678 None:intergenic 40.0%
GTAACGACTAACAAGCAACA+TGG + chr1_1:54857672-54857691 Msa0029550:intron 40.0%
CATGCAAACAGGGAAATTGA+AGG - chr1_1:54857705-54857724 None:intergenic 40.0%
AACAGCCATGGTTAGAAATG+GGG - chr1_1:54857906-54857925 None:intergenic 40.0%
! AAAGCATTCCTAAACAGCCA+TGG - chr1_1:54857918-54857937 None:intergenic 40.0%
ATCACATCGAGGGTTTCAAT+TGG + chr1_1:54858154-54858173 Msa0029550:intron 40.0%
CTCAATATCAGTAGGACTGT+GGG - chr1_1:54858199-54858218 None:intergenic 40.0%
TCTCAATATCAGTAGGACTG+TGG - chr1_1:54858200-54858219 None:intergenic 40.0%
TTTGACCATTTATCTGCGTC+AGG + chr1_1:54858245-54858264 Msa0029550:CDS 40.0%
TTCCAGTTTGATTAAGCTGC+TGG + chr1_1:54858408-54858427 Msa0029550:CDS 40.0%
ATCCAGCAGCTTAATCAAAC+TGG - chr1_1:54858413-54858432 None:intergenic 40.0%
TGTTAGTCCAATTGCTGTAC+CGG + chr1_1:54858664-54858683 Msa0029550:CDS 40.0%
AATTGAGCTCTCTTTGATGC+CGG - chr1_1:54858686-54858705 None:intergenic 40.0%
AAGCAACAGAGATTACCTTG+TGG - chr1_1:54858741-54858760 None:intergenic 40.0%
CTTGTCAATCCTTTGCATGT+TGG + chr1_1:54858766-54858785 Msa0029550:intron 40.0%
! TTTAAGTGACTTGGACCTAC+TGG + chr1_1:54858811-54858830 Msa0029550:intron 40.0%
TGAAGATGCTCATGAGTCAA+CGG + chr1_1:54858939-54858958 Msa0029550:CDS 40.0%
TGTTCTGTACCTGTGACAAA+TGG + chr1_1:54859009-54859028 Msa0029550:CDS 40.0%
AATCCTCTTCCATTTGTCAC+AGG - chr1_1:54859021-54859040 None:intergenic 40.0%
GTTATTACTCAATGAGAGGG+GGG + chr1_1:54859108-54859127 Msa0029550:intron 40.0%
! ATTTGCTAGATTGAGGACCA+GGG + chr1_1:54859341-54859360 Msa0029550:intron 40.0%
CAGCTTCTTTCCTTTCATAG+TGG + chr1_1:54859373-54859392 Msa0029550:CDS 40.0%
TTTCCAGTCCCTTCAATATC+TGG - chr1_1:54859464-54859483 None:intergenic 40.0%
! AGGATGGTTAACTTGAACTC+TGG + chr1_1:54859560-54859579 Msa0029550:CDS 40.0%
TTCCATTAGAACGGTTCACA+TGG + chr1_1:54859594-54859613 Msa0029550:CDS 40.0%
GTATCAAGCACTTTCAGAGA+CGG + chr1_1:54859718-54859737 Msa0029550:CDS 40.0%
TATCAAGCACTTTCAGAGAC+GGG + chr1_1:54859719-54859738 Msa0029550:CDS 40.0%
TTGTTTAGACCTGATGCTGT+TGG + chr1_1:54859875-54859894 Msa0029550:CDS 40.0%
TCTGACTAATGATCCTTGCA+TGG + chr1_1:54859964-54859983 Msa0029550:CDS 40.0%
GTACCAACCAATCATATAGC+TGG + chr1_1:54860190-54860209 Msa0029550:intron 40.0%
CAACCAGCTATATGATTGGT+TGG - chr1_1:54860196-54860215 None:intergenic 40.0%
AGGTCAACCAGCTATATGAT+TGG - chr1_1:54860200-54860219 None:intergenic 40.0%
TCAGCTATTCACACAAGACA+CGG - chr1_1:54860278-54860297 None:intergenic 40.0%
ACCAAAAGCCAAAATAAGGG+GGG - chr1_1:54860314-54860333 None:intergenic 40.0%
TTGATTACAGGTGGGAATTG+AGG + chr1_1:54860384-54860403 Msa0029550:intron 40.0%
! TTGCTCTCTGTCGTATTGAT+GGG - chr1_1:54860547-54860566 None:intergenic 40.0%
ATTGCTCTCTGTCGTATTGA+TGG - chr1_1:54860548-54860567 None:intergenic 40.0%
! GAATGACTCATTTTGCTTCG+GGG - chr1_1:54860575-54860594 None:intergenic 40.0%
CACAAAGTTTACAGTTCCCT+CGG - chr1_1:54860636-54860655 None:intergenic 40.0%
CGGAACATGTATAGAACTTC+GGG - chr1_1:54860778-54860797 None:intergenic 40.0%
ATGATTCCCATCTGAAAGGT+CGG - chr1_1:54860798-54860817 None:intergenic 40.0%
ACCTTTCAGATGGGAATCAT+TGG + chr1_1:54860798-54860817 Msa0029550:CDS 40.0%
TCCAATGATTCCCATCTGAA+AGG - chr1_1:54860802-54860821 None:intergenic 40.0%
AGATGGGAATCATTGGAGTT+CGG + chr1_1:54860805-54860824 Msa0029550:CDS 40.0%
AAGTAGATCGGCAACAAGTG+TGG - chr1_1:54853078-54853097 None:intergenic 45.0%
!! GTGAAGTGTTGAACTGAGAG+AGG - chr1_1:54853130-54853149 None:intergenic 45.0%
GTACTACTTTGAGCTCAGCT+AGG + chr1_1:54853200-54853219 Msa0029550:five_prime_UTR 45.0%
! TTGTGTCCGTGTGCTCTTTT+TGG + chr1_1:54853328-54853347 Msa0029550:five_prime_UTR 45.0%
TGTGATTATGGGGGAAAGGT+TGG + chr1_1:54853486-54853505 Msa0029550:exon 45.0%
GTGATTATGGGGGAAAGGTT+GGG + chr1_1:54853487-54853506 Msa0029550:exon 45.0%
! GGTGGTTCATCTGATTTGAG+TGG + chr1_1:54853538-54853557 Msa0029550:CDS 45.0%
! CATCTGATTTGAGTGGGATG+GGG + chr1_1:54853545-54853564 Msa0029550:CDS 45.0%
TATAGCTAGCCGTGTGAATC+CGG + chr1_1:54853621-54853640 Msa0029550:CDS 45.0%
! GACAACAGTTTTTCCCACTC+CGG + chr1_1:54853668-54853687 Msa0029550:CDS 45.0%
GGAGCATGAAGAAGACGTAT+TGG - chr1_1:54853722-54853741 None:intergenic 45.0%
GAGGAAGGAGATCTTGAGAA+AGG + chr1_1:54853742-54853761 Msa0029550:CDS 45.0%
AAGGGAATAAGGAAGGGGAT+AGG + chr1_1:54853761-54853780 Msa0029550:CDS 45.0%
TCTTGCAGGACATGTTTCAC+CGG + chr1_1:54853849-54853868 Msa0029550:CDS 45.0%
GGAAAAAAGAGCAGAGTAGC+TGG + chr1_1:54853886-54853905 Msa0029550:CDS 45.0%
AAAAAGAGCAGAGTAGCTGG+AGG + chr1_1:54853889-54853908 Msa0029550:CDS 45.0%
TGCAGATCTGAGTAGAGGTA+AGG + chr1_1:54853951-54853970 Msa0029550:CDS 45.0%
TTGTGGGAAATGCAATGCAG+AGG + chr1_1:54854028-54854047 Msa0029550:CDS 45.0%
ACTACACTATTCCGCTATCG+CGG - chr1_1:54854217-54854236 None:intergenic 45.0%
!! CGATAGCGGAATAGTGTAGT+GGG + chr1_1:54854217-54854236 Msa0029550:intron 45.0%
TGGGTCAGGGTTTGAAGAAA+TGG + chr1_1:54854236-54854255 Msa0029550:intron 45.0%
TTCGAACAATGGCACATTGC+AGG - chr1_1:54854305-54854324 None:intergenic 45.0%
! GACAAACCCAATTTTGCACC+AGG - chr1_1:54854459-54854478 None:intergenic 45.0%
!! TTCCTCTCCCATTTTTCCTG+AGG + chr1_1:54854501-54854520 Msa0029550:intron 45.0%
!! TCTCCCATTTTTCCTGAGGA+GGG + chr1_1:54854505-54854524 Msa0029550:intron 45.0%
AACGAAAGAGTTTGGGCTGT+GGG - chr1_1:54854546-54854565 None:intergenic 45.0%
AAACGAAAGAGTTTGGGCTG+TGG - chr1_1:54854547-54854566 None:intergenic 45.0%
! GTCAGATAATTTGGGACGGA+GGG - chr1_1:54854725-54854744 None:intergenic 45.0%
CGACATATAATTGGGACGGA+GGG + chr1_1:54854958-54854977 Msa0029550:intron 45.0%
!! ACTGTTAGTCTTCGCAACAG+CGG + chr1_1:54855100-54855119 Msa0029550:intron 45.0%
! ACTGATCCTTTGGTAGCTAC+AGG + chr1_1:54855683-54855702 Msa0029550:intron 45.0%
TGGCAAGACATGCTAACTCT+GGG + chr1_1:54855756-54855775 Msa0029550:intron 45.0%
GTTTCGTAAGTTGCACCTGT+TGG + chr1_1:54855783-54855802 Msa0029550:intron 45.0%
TGGAGTGATAAGGAGGTTGA+GGG - chr1_1:54855913-54855932 None:intergenic 45.0%
TAAGGAGTGGAGTGATAAGG+AGG - chr1_1:54855920-54855939 None:intergenic 45.0%
CAAGATCATGAGTTGCCTTG+TGG + chr1_1:54855989-54856008 Msa0029550:intron 45.0%
CACTATTGGAAACGTGCTAC+CGG + chr1_1:54856066-54856085 Msa0029550:intron 45.0%
ACTATTGGAAACGTGCTACC+GGG + chr1_1:54856067-54856086 Msa0029550:intron 45.0%
!! CCTAAAATGCGGCTTTTTCC+CGG - chr1_1:54856088-54856107 None:intergenic 45.0%
! CGGGAAAAAGCCGCATTTTA+GGG + chr1_1:54856086-54856105 Msa0029550:intron 45.0%
! GGGAAAAAGCCGCATTTTAG+GGG + chr1_1:54856087-54856106 Msa0029550:intron 45.0%
! GGAAAAAGCCGCATTTTAGG+GGG + chr1_1:54856088-54856107 Msa0029550:intron 45.0%
!! GAAAAAGCCGCATTTTAGGG+GGG + chr1_1:54856089-54856108 Msa0029550:intron 45.0%
TCGAGAGTCTAAGCAAGATC+GGG - chr1_1:54856234-54856253 None:intergenic 45.0%
! CAACAACTGGCCTCTAAAGA+AGG + chr1_1:54856446-54856465 Msa0029550:intron 45.0%
! CTGGCCTCTAAAGAAGGATA+TGG + chr1_1:54856452-54856471 Msa0029550:intron 45.0%
! GGCCTCTAAAGAAGGATATG+GGG + chr1_1:54856454-54856473 Msa0029550:intron 45.0%
! GCCTCTAAAGAAGGATATGG+GGG + chr1_1:54856455-54856474 Msa0029550:intron 45.0%
ACCCCCATATCCTTCTTTAG+AGG - chr1_1:54856459-54856478 None:intergenic 45.0%
GGGGGTTCTTCAAGAAATTC+AGG + chr1_1:54856979-54856998 Msa0029550:CDS 45.0%
TCAAGTCCACCTCAAACAAG+TGG + chr1_1:54857351-54857370 Msa0029550:CDS 45.0%
TTCTCCGCTAGAACTAGAAG+GGG - chr1_1:54857403-54857422 None:intergenic 45.0%
CTTCTCCGCTAGAACTAGAA+GGG - chr1_1:54857404-54857423 None:intergenic 45.0%
AGGCAATGTGTGATGTTTGC+TGG + chr1_1:54857581-54857600 Msa0029550:intron 45.0%
ACTAACAAGCAACATGGCTC+AGG + chr1_1:54857678-54857697 Msa0029550:intron 45.0%
CTAACAAGCAACATGGCTCA+GGG + chr1_1:54857679-54857698 Msa0029550:intron 45.0%
ACATTAAACGGAGCAAGTGC+TGG - chr1_1:54857786-54857805 None:intergenic 45.0%
TCCTCTTGTACTTAGAGCAC+AGG + chr1_1:54858068-54858087 Msa0029550:CDS 45.0%
! ACCTGTGCTCTAAGTACAAG+AGG - chr1_1:54858072-54858091 None:intergenic 45.0%
!! CGGTTATTTCTGCTAGCGTA+CGG + chr1_1:54858330-54858349 Msa0029550:intron 45.0%
CAGTCATGTCGTGTAAGATG+AGG - chr1_1:54858360-54858379 None:intergenic 45.0%
TTTGATGCCGGTACAGCAAT+TGG - chr1_1:54858674-54858693 None:intergenic 45.0%
ACAGAGATTACCTTGTGGCA+GGG - chr1_1:54858736-54858755 None:intergenic 45.0%
AACAGAGATTACCTTGTGGC+AGG - chr1_1:54858737-54858756 None:intergenic 45.0%
TGACCCTCAAACTTGTCCTT+AGG + chr1_1:54858881-54858900 Msa0029550:intron 45.0%
CTGAAGTTCATCAAGCTCCT+CGG - chr1_1:54858974-54858993 None:intergenic 45.0%
GTACCTGTGACAAATGGAAG+AGG + chr1_1:54859015-54859034 Msa0029550:CDS 45.0%
!! GATTTGCTAGATTGAGGACC+AGG + chr1_1:54859340-54859359 Msa0029550:intron 45.0%
TCCTTTCATAGTGGCAGAAG+AGG + chr1_1:54859382-54859401 Msa0029550:CDS 45.0%
TCCTCTTCTGCCACTATGAA+AGG - chr1_1:54859386-54859405 None:intergenic 45.0%
GATCCAGATATTGAAGGGAC+TGG + chr1_1:54859458-54859477 Msa0029550:CDS 45.0%
AGCCATGTGAACCGTTCTAA+TGG - chr1_1:54859599-54859618 None:intergenic 45.0%
AGAACGGTTCACATGGCTTA+TGG + chr1_1:54859601-54859620 Msa0029550:CDS 45.0%
GTCTTCTTCACAGAGCTGTA+AGG + chr1_1:54859741-54859760 Msa0029550:CDS 45.0%
TGAACTAGGACCCAAAGACA+AGG + chr1_1:54859823-54859842 Msa0029550:CDS 45.0%
GACACCACTTCATATAGCAG+CGG + chr1_1:54859910-54859929 Msa0029550:CDS 45.0%
ACACCACTTCATATAGCAGC+GGG + chr1_1:54859911-54859930 Msa0029550:CDS 45.0%
TTTCCCGCTGCTATATGAAG+TGG - chr1_1:54859917-54859936 None:intergenic 45.0%
CATATAGCAGCGGGAAAAGA+TGG + chr1_1:54859920-54859939 Msa0029550:CDS 45.0%
!! ATCGGAGTCCTGCTTTTAAC+TGG + chr1_1:54860110-54860129 Msa0029550:intron 45.0%
TATCAGTGACCAAAGTAGGC+AGG - chr1_1:54860220-54860239 None:intergenic 45.0%
! TTACTGATGCAGTGCTGCTA+AGG - chr1_1:54860357-54860376 None:intergenic 45.0%
CTTGTAGAACTGCAGTAGGA+AGG + chr1_1:54860668-54860687 Msa0029550:CDS 45.0%
AACTGCAGTAGGAAGGTCTA+TGG + chr1_1:54860675-54860694 Msa0029550:CDS 45.0%
ACATGTTCCGACCTTTCAGA+TGG + chr1_1:54860788-54860807 Msa0029550:CDS 45.0%
CATGTTCCGACCTTTCAGAT+GGG + chr1_1:54860789-54860808 Msa0029550:CDS 45.0%
TTGGAGTTCGGAACAAGCTA+AGG + chr1_1:54860817-54860836 Msa0029550:CDS 45.0%
! AAATGACCGAGGTTTAGGAC+TGG + chr1_1:54860898-54860917 Msa0029550:three_prime_UTR 45.0%
ACACAACCAGTCCTAAACCT+CGG - chr1_1:54860907-54860926 None:intergenic 45.0%
!! AATTAGAATTAAAAAATTAA+AGG - chr1_1:54854640-54854659 None:intergenic 5.0%
CAACAAGTGTGGCAGGCAAA+TGG - chr1_1:54853067-54853086 None:intergenic 50.0%
GTCAGAGAGGTGAGGTTGAA+AGG - chr1_1:54853102-54853121 None:intergenic 50.0%
! AGTTTTTCCCACTCCGGTCT+GGG + chr1_1:54853674-54853693 Msa0029550:CDS 50.0%
TACGTCTTCTTCATGCTCCG+AGG + chr1_1:54853723-54853742 Msa0029550:CDS 50.0%
TCTTCTTCATGCTCCGAGGA+AGG + chr1_1:54853727-54853746 Msa0029550:CDS 50.0%
! ATGTTTCACCGGCTGTGGAA+AGG + chr1_1:54853860-54853879 Msa0029550:CDS 50.0%
! TGTTTCACCGGCTGTGGAAA+GGG + chr1_1:54853861-54853880 Msa0029550:CDS 50.0%
TTCGAATCGAGCTGTCTGTC+AGG + chr1_1:54853915-54853934 Msa0029550:CDS 50.0%
!! GTCTGTCAGGTTGAAGACTG+TGG + chr1_1:54853928-54853947 Msa0029550:CDS 50.0%
TGTGGTGCAGATCTGAGTAG+AGG + chr1_1:54853946-54853965 Msa0029550:CDS 50.0%
TAAGGCTAGTAGGGCTCTTG+TGG + chr1_1:54854011-54854030 Msa0029550:CDS 50.0%
AAGGCTAGTAGGGCTCTTGT+GGG + chr1_1:54854012-54854031 Msa0029550:CDS 50.0%
!! GCGATAGCGGAATAGTGTAG+TGG + chr1_1:54854216-54854235 Msa0029550:intron 50.0%
!! CGGAATAGTGTAGTGGGTCA+GGG + chr1_1:54854223-54854242 Msa0029550:intron 50.0%
! ATTTTGCACCAGGGATGCGT+AGG - chr1_1:54854449-54854468 None:intergenic 50.0%
ACGCATCCCTGGTGCAAAAT+TGG + chr1_1:54854449-54854468 Msa0029550:intron 50.0%
CGCATCCCTGGTGCAAAATT+GGG + chr1_1:54854450-54854469 Msa0029550:intron 50.0%
GGAGAGGAACTGCACATGTT+TGG - chr1_1:54854490-54854509 None:intergenic 50.0%
CTCCTCAGGAAAAATGGGAG+AGG - chr1_1:54854506-54854525 None:intergenic 50.0%
!! CTCTCCCATTTTTCCTGAGG+AGG + chr1_1:54854504-54854523 Msa0029550:intron 50.0%
! CGTCAGATAATTTGGGACGG+AGG - chr1_1:54854726-54854745 None:intergenic 50.0%
GCGACATATAATTGGGACGG+AGG + chr1_1:54854957-54854976 Msa0029550:intron 50.0%
TCTTCGCAACAGCGGTTATC+CGG + chr1_1:54855108-54855127 Msa0029550:intron 50.0%
! GCTTGGCTGGCCATAACAAA+CGG + chr1_1:54855438-54855457 Msa0029550:CDS 50.0%
CTGGCCATAACAAACGGAGA+AGG + chr1_1:54855444-54855463 Msa0029550:CDS 50.0%
CTGGCAAGACATGCTAACTC+TGG + chr1_1:54855755-54855774 Msa0029550:intron 50.0%
! AGACATGCTAACTCTGGGAG+AGG + chr1_1:54855761-54855780 Msa0029550:intron 50.0%
GTGGAGTGATAAGGAGGTTG+AGG - chr1_1:54855914-54855933 None:intergenic 50.0%
TGGTTGAGGCGGAGAAGTTA+AGG - chr1_1:54855938-54855957 None:intergenic 50.0%
!! GGTTGGTTTGATGGTTGAGG+CGG - chr1_1:54855949-54855968 None:intergenic 50.0%
!! TTGGGGGCTTTGAGCACATA+GGG - chr1_1:54856041-54856060 None:intergenic 50.0%
!! TTTGGGGGCTTTGAGCACAT+AGG - chr1_1:54856042-54856061 None:intergenic 50.0%
! CCGGGAAAAAGCCGCATTTT+AGG + chr1_1:54856085-54856104 Msa0029550:intron 50.0%
CGGGAGAGGGTTGAAAGATT+GGG - chr1_1:54856215-54856234 None:intergenic 50.0%
TCGGGAGAGGGTTGAAAGAT+TGG - chr1_1:54856216-54856235 None:intergenic 50.0%
GTCTAAGCAAGATCGGGAGA+GGG - chr1_1:54856228-54856247 None:intergenic 50.0%
AGTCTAAGCAAGATCGGGAG+AGG - chr1_1:54856229-54856248 None:intergenic 50.0%
GTCAGATCAGCCTACAGATC+AGG + chr1_1:54856852-54856871 Msa0029550:CDS 50.0%
! GGGGGACTGTTTGAAATGCT+GGG - chr1_1:54857156-54857175 None:intergenic 50.0%
CAGCATTTCAAACAGTCCCC+CGG + chr1_1:54857155-54857174 Msa0029550:CDS 50.0%
TCTCTTGCTTCCGAGTAAGC+CGG - chr1_1:54857177-54857196 None:intergenic 50.0%
TCGGAAGCAAGAGATAGCAG+TGG + chr1_1:54857183-54857202 Msa0029550:CDS 50.0%
!! CTAGCTCTGTTGACTACCCT+TGG + chr1_1:54857307-54857326 Msa0029550:CDS 50.0%
GCTAGAACTAGAAGGGGACT+GGG - chr1_1:54857397-54857416 None:intergenic 50.0%
!! CAGTCCCCTTCTAGTTCTAG+CGG + chr1_1:54857396-54857415 Msa0029550:CDS 50.0%
GCTTCTCCGCTAGAACTAGA+AGG - chr1_1:54857405-54857424 None:intergenic 50.0%
ATTGAGAGCTACATACGCCC+TGG + chr1_1:54858213-54858232 Msa0029550:CDS 50.0%
GTCAACGGATCAATACTCCG+AGG + chr1_1:54858954-54858973 Msa0029550:CDS 50.0%
AGAAGCTGCTACTCAAACCC+TGG - chr1_1:54859361-54859380 None:intergenic 50.0%
CTAGTAGAGGTTCAAGCACG+CGG - chr1_1:54859424-54859443 None:intergenic 50.0%
TCACCACTGCACACCAATCA+TGG - chr1_1:54859640-54859659 None:intergenic 50.0%
CCAACAAGCGCCTTGTCTTT+GGG - chr1_1:54859836-54859855 None:intergenic 50.0%
ACCAACAAGCGCCTTGTCTT+TGG - chr1_1:54859837-54859856 None:intergenic 50.0%
! AAAGACAAGGCGCTTGTTGG+TGG + chr1_1:54859836-54859855 Msa0029550:CDS 50.0%
AGATGGTTCCGAGGATGTAC+TGG + chr1_1:54859937-54859956 Msa0029550:CDS 50.0%
! CAGAGCATCCAGTACATCCT+CGG - chr1_1:54859948-54859967 None:intergenic 50.0%
AAGCCAAAATAAGGGGGGCT+GGG - chr1_1:54860309-54860328 None:intergenic 50.0%
AAAGCCAAAATAAGGGGGGC+TGG - chr1_1:54860310-54860329 None:intergenic 50.0%
!!! GCCCCCCTTATTTTGGCTTT+TGG + chr1_1:54860310-54860329 Msa0029550:intron 50.0%
TACAGGTGGGAATTGAGGCA+TGG + chr1_1:54860389-54860408 Msa0029550:intron 50.0%
AAGAATGCCCGTGACAGTAC+AGG + chr1_1:54860412-54860431 Msa0029550:CDS 50.0%
CGTAATCGCGCATAATCCTC+AGG - chr1_1:54860445-54860464 None:intergenic 50.0%
GAGGATTATGCGCGATTACG+TGG + chr1_1:54860445-54860464 Msa0029550:CDS 50.0%
AACACAAGGAGCAGCTCATG+TGG + chr1_1:54860510-54860529 Msa0029550:CDS 50.0%
CTGAAGTAAGACGTAGCCGA+GGG + chr1_1:54860617-54860636 Msa0029550:CDS 50.0%
CAGACCTGCAATGCTCTCTA+TGG + chr1_1:54860702-54860721 Msa0029550:CDS 50.0%
ACCTGCAATGCTCTCTATGG+TGG + chr1_1:54860705-54860724 Msa0029550:CDS 50.0%
ACAAACACAGACCGCTGCTA+TGG - chr1_1:54860731-54860750 None:intergenic 50.0%
TGGGAGAGACAACGGTGTGA+TGG - chr1_1:54852950-54852969 None:intergenic 55.0%
AGATCGGCAACAAGTGTGGC+AGG - chr1_1:54853074-54853093 None:intergenic 55.0%
AGGTGTACGTCAGAGAGGTG+AGG - chr1_1:54853110-54853129 None:intergenic 55.0%
! GAGAGAGGTGTACGTCAGAG+AGG - chr1_1:54853115-54853134 None:intergenic 55.0%
AGAGCACACGGACACAACCA+TGG - chr1_1:54853325-54853344 None:intergenic 55.0%
! CTGATTTGAGTGGGATGGGG+AGG + chr1_1:54853548-54853567 Msa0029550:CDS 55.0%
ATTTGAGTGGGATGGGGAGG+AGG + chr1_1:54853551-54853570 Msa0029550:CDS 55.0%
! CAGTTTTTCCCACTCCGGTC+TGG + chr1_1:54853673-54853692 Msa0029550:CDS 55.0%
TTGGACGAACCTCCAACCAC+CGG - chr1_1:54853703-54853722 None:intergenic 55.0%
! AGGACATGTTTCACCGGCTG+TGG + chr1_1:54853855-54853874 Msa0029550:CDS 55.0%
TTTCCGTCCCTTTCCACAGC+CGG - chr1_1:54853871-54853890 None:intergenic 55.0%
!! GCGGAATAGTGTAGTGGGTC+AGG + chr1_1:54854222-54854241 Msa0029550:intron 55.0%
ATGTCGTGTGCAAGAGAGCG+AGG - chr1_1:54854262-54854281 None:intergenic 55.0%
ACAATGGCACATTGCAGGCG+CGG - chr1_1:54854300-54854319 None:intergenic 55.0%
AGGGATGCGTAGGCTATGAC+AGG - chr1_1:54854439-54854458 None:intergenic 55.0%
TGTCATAGCCTACGCATCCC+TGG + chr1_1:54854438-54854457 Msa0029550:intron 55.0%
TGAGGCCAATAACCCTCCTC+AGG - chr1_1:54854520-54854539 None:intergenic 55.0%
!! ACAGCAGTATGGCGGATAGC+CGG - chr1_1:54855130-54855149 None:intergenic 55.0%
GAGAAGCTGTCGAAGACGCT+TGG + chr1_1:54855421-54855440 Msa0029550:CDS 55.0%
GAGGCGGAGAAGTTAAGGAG+TGG - chr1_1:54855933-54855952 None:intergenic 55.0%
CAGGATGGTGCGATTCCACA+AGG - chr1_1:54856007-54856026 None:intergenic 55.0%
!! TGGGGGCTTTGAGCACATAG+GGG - chr1_1:54856040-54856059 None:intergenic 55.0%
!! AAAGCCGCATTTTAGGGGGG+CGG + chr1_1:54856092-54856111 Msa0029550:intron 55.0%
TGGAGACCCCTGAGAACCAT+TGG - chr1_1:54857025-54857044 None:intergenic 55.0%
! CGGGGGACTGTTTGAAATGC+TGG - chr1_1:54857157-54857176 None:intergenic 55.0%
AAACAGTCCCCCGGCTTACT+CGG + chr1_1:54857164-54857183 Msa0029550:CDS 55.0%
TCTTGCTTCCGAGTAAGCCG+GGG - chr1_1:54857175-54857194 None:intergenic 55.0%
CTCTTGCTTCCGAGTAAGCC+GGG - chr1_1:54857176-54857195 None:intergenic 55.0%
CGCTAGAACTAGAAGGGGAC+TGG - chr1_1:54857398-54857417 None:intergenic 55.0%
!! TAGTTCTAGCGGAGAAGCCC+AGG + chr1_1:54857407-54857426 Msa0029550:CDS 55.0%
GTCTGTGCGACTCTGAATGG+AGG - chr1_1:54858007-54858026 None:intergenic 55.0%
TCGGTCTGTGCGACTCTGAA+TGG - chr1_1:54858010-54858029 None:intergenic 55.0%
CTCGGCCTGACGCAGATAAA+TGG - chr1_1:54858253-54858272 None:intergenic 55.0%
CATTTATCTGCGTCAGGCCG+AGG + chr1_1:54858251-54858270 Msa0029550:CDS 55.0%
TACTTCCTCCCACACAGCCT+CGG - chr1_1:54858271-54858290 None:intergenic 55.0%
GGACCATGATTGGTGTGCAG+TGG + chr1_1:54859634-54859653 Msa0029550:CDS 55.0%
! CCCAAAGACAAGGCGCTTGT+TGG + chr1_1:54859833-54859852 Msa0029550:CDS 55.0%
! TGAAGTGGTGTCAAACCGGC+AGG - chr1_1:54859902-54859921 None:intergenic 55.0%
AGCGGGAAAAGATGGTTCCG+AGG + chr1_1:54859928-54859947 Msa0029550:CDS 55.0%
GCTGGTTGACCTGCCTACTT+TGG + chr1_1:54860208-54860227 Msa0029550:intron 55.0%
!! AACCCCAGCCCCCCTTATTT+TGG + chr1_1:54860303-54860322 Msa0029550:intron 55.0%
AGCCAAAATAAGGGGGGCTG+GGG - chr1_1:54860308-54860327 None:intergenic 55.0%
TGTGGAGCCTGTACTGTCAC+GGG - chr1_1:54860422-54860441 None:intergenic 55.0%
GTGTGGAGCCTGTACTGTCA+CGG - chr1_1:54860423-54860442 None:intergenic 55.0%
TCGCGCATAATCCTCAGGTG+TGG - chr1_1:54860440-54860459 None:intergenic 55.0%
ACAAGGAGCAGCTCATGTGG+TGG + chr1_1:54860513-54860532 Msa0029550:CDS 55.0%
GCTGAAGTAAGACGTAGCCG+AGG + chr1_1:54860616-54860635 Msa0029550:CDS 55.0%
!! GCCACCATAGAGAGCATTGC+AGG - chr1_1:54860709-54860728 None:intergenic 55.0%
CTCTATGGTGGCCATAGCAG+CGG + chr1_1:54860717-54860736 Msa0029550:CDS 55.0%
AGCAGCGGTCTGTGTTTGTG+TGG + chr1_1:54860732-54860751 Msa0029550:CDS 55.0%
TGGGATGGGGAGGAGGTCAA+GGG + chr1_1:54853558-54853577 Msa0029550:CDS 60.0%
TGGGGAGGAGGTCAAGGGAA+TGG + chr1_1:54853563-54853582 Msa0029550:CDS 60.0%
TAGCCGTGTGAATCCGGTGC+AGG + chr1_1:54853627-54853646 Msa0029550:CDS 60.0%
CAGGCGGAGAGTTTGCGAGT+GGG + chr1_1:54853646-54853665 Msa0029550:CDS 60.0%
TGGACGAACCTCCAACCACC+GGG - chr1_1:54853702-54853721 None:intergenic 60.0%
! TCACCGGCTGTGGAAAGGGA+CGG + chr1_1:54853865-54853884 Msa0029550:CDS 60.0%
!! TGTTGATGGCGCCGCGATAG+CGG + chr1_1:54854203-54854222 Msa0029550:intron 60.0%
AATGGCACATTGCAGGCGCG+GGG - chr1_1:54854298-54854317 None:intergenic 60.0%
CAATGGCACATTGCAGGCGC+GGG - chr1_1:54854299-54854318 None:intergenic 60.0%
AGTTTGGGCTGTGGGTCGTG+AGG - chr1_1:54854538-54854557 None:intergenic 60.0%
AGCTGTCGAAGACGCTTGGC+TGG + chr1_1:54855425-54855444 Msa0029550:CDS 60.0%
ACATAGGGGGGGCAGTTTGC+AGG - chr1_1:54856026-54856045 None:intergenic 60.0%
!! GGGCTTTGAGCACATAGGGG+GGG - chr1_1:54856037-54856056 None:intergenic 60.0%
!! GGGGCTTTGAGCACATAGGG+GGG - chr1_1:54856038-54856057 None:intergenic 60.0%
!! GGGGGCTTTGAGCACATAGG+GGG - chr1_1:54856039-54856058 None:intergenic 60.0%
!! AAGCCGCATTTTAGGGGGGC+GGG + chr1_1:54856093-54856112 Msa0029550:intron 60.0%
CAACCCGCCCCCCTAAAATG+CGG - chr1_1:54856099-54856118 None:intergenic 60.0%
!! GCATTTTAGGGGGGCGGGTT+GGG + chr1_1:54856098-54856117 Msa0029550:intron 60.0%
CTTGCTTCCGAGTAAGCCGG+GGG - chr1_1:54857174-54857193 None:intergenic 60.0%
CCTGATGCTGTTGGTCCTGC+CGG + chr1_1:54859884-54859903 Msa0029550:CDS 60.0%
CAGTACAGGCTCCACACCTG+AGG + chr1_1:54860426-54860445 Msa0029550:CDS 60.0%
GTGGGATGGGGAGGAGGTCA+AGG + chr1_1:54853557-54853576 Msa0029550:CDS 65.0%
CCGCCTGCACCGGATTCACA+CGG - chr1_1:54853633-54853652 None:intergenic 65.0%
CCGTGTGAATCCGGTGCAGG+CGG + chr1_1:54853630-54853649 Msa0029550:CDS 65.0%
CGCAAACTCTCCGCCTGCAC+CGG - chr1_1:54853643-54853662 None:intergenic 65.0%
GCAGGCGGAGAGTTTGCGAG+TGG + chr1_1:54853645-54853664 Msa0029550:CDS 65.0%
CAACCACCGGGATCCCAGAC+CGG - chr1_1:54853690-54853709 None:intergenic 65.0%
! TCTGGGATCCCGGTGGTTGG+AGG + chr1_1:54853691-54853710 Msa0029550:CDS 65.0%
AGGGGGGGCAGTTTGCAGGA+TGG - chr1_1:54856022-54856041 None:intergenic 65.0%
!! CGCATTTTAGGGGGGCGGGT+TGG + chr1_1:54856097-54856116 Msa0029550:intron 65.0%
ACCTGATGCGCCCTGCCACA+AGG + chr1_1:54858723-54858742 Msa0029550:CDS 65.0%
ACCTTGTGGCAGGGCGCATC+AGG - chr1_1:54858727-54858746 None:intergenic 65.0%
CCGGCAGGACCAACAGCATC+AGG - chr1_1:54859887-54859906 None:intergenic 65.0%
CCGGGATCCCAGACCGGAGT+GGG - chr1_1:54853684-54853703 None:intergenic 70.0%
! CCCACTCCGGTCTGGGATCC+CGG + chr1_1:54853681-54853700 Msa0029550:CDS 70.0%
ACCGGGATCCCAGACCGGAG+TGG - chr1_1:54853685-54853704 None:intergenic 70.0%
! ACTCCGGTCTGGGATCCCGG+TGG + chr1_1:54853684-54853703 Msa0029550:CDS 70.0%
! CGGTCTGGGATCCCGGTGGT+TGG + chr1_1:54853688-54853707 Msa0029550:CDS 70.0%
ACATTGCAGGCGCGGGGAGG+GGG - chr1_1:54854292-54854311 None:intergenic 70.0%
CACATTGCAGGCGCGGGGAG+GGG - chr1_1:54854293-54854312 None:intergenic 70.0%
GCACATTGCAGGCGCGGGGA+GGG - chr1_1:54854294-54854313 None:intergenic 70.0%
TGCGTCAGGCCGAGGCTGTG+TGG + chr1_1:54858259-54858278 Msa0029550:CDS 70.0%
GCGTCAGGCCGAGGCTGTGT+GGG + chr1_1:54858260-54858279 Msa0029550:CDS 70.0%
TCAGGCCGAGGCTGTGTGGG+AGG + chr1_1:54858263-54858282 Msa0029550:CDS 70.0%
GGCACATTGCAGGCGCGGGG+AGG - chr1_1:54854295-54854314 None:intergenic 75.0%
! TTGCAGGCGCGGGGAGGGGG+AGG - chr1_1:54854289-54854308 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 54852898 54861127 54852898 ID=Msa0029550;Name=Msa0029550
chr1_1 mRNA 54852898 54861127 54852898 ID=Msa0029550-mRNA-1;Parent=Msa0029550;Name=Msa0029550-mRNA-1;_AED=0.14;_eAED=0.14;_QI=575|1|1|1|0.9|0.81|11|290|1003
chr1_1 exon 54852898 54853031 54852898 ID=Msa0029550-mRNA-1:exon:16348;Parent=Msa0029550-mRNA-1
chr1_1 exon 54853052 54854070 54853052 ID=Msa0029550-mRNA-1:exon:16349;Parent=Msa0029550-mRNA-1
chr1_1 exon 54855388 54855569 54855388 ID=Msa0029550-mRNA-1:exon:16350;Parent=Msa0029550-mRNA-1
chr1_1 exon 54856845 54857428 54856845 ID=Msa0029550-mRNA-1:exon:16351;Parent=Msa0029550-mRNA-1
chr1_1 exon 54858015 54858089 54858015 ID=Msa0029550-mRNA-1:exon:16352;Parent=Msa0029550-mRNA-1
chr1_1 exon 54858180 54858287 54858180 ID=Msa0029550-mRNA-1:exon:16353;Parent=Msa0029550-mRNA-1
chr1_1 exon 54858391 54858508 54858391 ID=Msa0029550-mRNA-1:exon:16354;Parent=Msa0029550-mRNA-1
chr1_1 exon 54858603 54858744 54858603 ID=Msa0029550-mRNA-1:exon:16355;Parent=Msa0029550-mRNA-1
chr1_1 exon 54858903 54859047 54858903 ID=Msa0029550-mRNA-1:exon:16356;Parent=Msa0029550-mRNA-1
chr1_1 exon 54859350 54859985 54859350 ID=Msa0029550-mRNA-1:exon:16357;Parent=Msa0029550-mRNA-1
chr1_1 exon 54860394 54861127 54860394 ID=Msa0029550-mRNA-1:exon:16358;Parent=Msa0029550-mRNA-1
chr1_1 five_prime_UTR 54852898 54853031 54852898 ID=Msa0029550-mRNA-1:five_prime_utr;Parent=Msa0029550-mRNA-1
chr1_1 five_prime_UTR 54853052 54853492 54853052 ID=Msa0029550-mRNA-1:five_prime_utr;Parent=Msa0029550-mRNA-1
chr1_1 CDS 54853493 54854070 54853493 ID=Msa0029550-mRNA-1:cds;Parent=Msa0029550-mRNA-1
chr1_1 CDS 54855388 54855569 54855388 ID=Msa0029550-mRNA-1:cds;Parent=Msa0029550-mRNA-1
chr1_1 CDS 54856845 54857428 54856845 ID=Msa0029550-mRNA-1:cds;Parent=Msa0029550-mRNA-1
chr1_1 CDS 54858015 54858089 54858015 ID=Msa0029550-mRNA-1:cds;Parent=Msa0029550-mRNA-1
chr1_1 CDS 54858180 54858287 54858180 ID=Msa0029550-mRNA-1:cds;Parent=Msa0029550-mRNA-1
chr1_1 CDS 54858391 54858508 54858391 ID=Msa0029550-mRNA-1:cds;Parent=Msa0029550-mRNA-1
chr1_1 CDS 54858603 54858744 54858603 ID=Msa0029550-mRNA-1:cds;Parent=Msa0029550-mRNA-1
chr1_1 CDS 54858903 54859047 54858903 ID=Msa0029550-mRNA-1:cds;Parent=Msa0029550-mRNA-1
chr1_1 CDS 54859350 54859985 54859350 ID=Msa0029550-mRNA-1:cds;Parent=Msa0029550-mRNA-1
chr1_1 CDS 54860394 54860837 54860394 ID=Msa0029550-mRNA-1:cds;Parent=Msa0029550-mRNA-1
chr1_1 three_prime_UTR 54860838 54861127 54860838 ID=Msa0029550-mRNA-1:three_prime_utr;Parent=Msa0029550-mRNA-1
Gene Sequence

>Msa0029550

ATGGGGGAAAGGTTGGGTGCTGAAAATTATCATTTTTATGGTGTTGGTGGTTCATCTGATTTGAGTGGGATGGGGAGGAGGTCAAGGGAATGGAATTTGAATGATTGGAGATGGGATGGTGATTTGTTTATAGCTAGCCGTGTGAATCCGGTGCAGGCGGAGAGTTTGCGAGTGGGACAACAGTTTTTCCCACTCCGGTCTGGGATCCCGGTGGTTGGAGGTTCGTCCAATACGTCTTCTTCATGCTCCGAGGAAGGAGATCTTGAGAAAGGGAATAAGGAAGGGGATAGGAAAAGGAGAGTTATTGTGCTGGAAGATGATGGTTTGAATGATGAAGCTGGTGCACTTAGCTTAAATCTTGCAGGACATGTTTCACCGGCTGTGGAAAGGGACGGAAAAAAGAGCAGAGTAGCTGGAGGAACTTCGAATCGAGCTGTCTGTCAGGTTGAAGACTGTGGTGCAGATCTGAGTAGAGGTAAGGATTATCACAGACGTCATAAAGTTTGTGAGATGCATTCTAAGGCTAGTAGGGCTCTTGTGGGAAATGCAATGCAGAGGTTTTGTCAACAGTGTAGTAGGTTTCACATACTTCAAGAGTTCGATGAAGGAAAGAGAAGCTGTCGAAGACGCTTGGCTGGCCATAACAAACGGAGAAGGAAAACAAATCAAGAAGCTGTTCCTAATGGAAGTCCAACAAATGATGATCAGACTAGTAGTTATCTGTTGATTAGTTTATTGAAGATACTTTCAAATATGCATTCTGACAGGTCAGATCAGCCTACAGATCAGGATCTATTAACTCATCTTCTAAGGAGTCTTGCAAGTCAGAATGATGAACAAGGGAGCAAGAACTTGTCAAACCTTTTACGAGAACAAGAGAATTTGTTGAGAGAAGGGGGTTCTTCAAGAAATTCAGGGATGGTATCAGCTTTATTCTCCAATGGTTCTCAGGGGTCTCCAACTGTTATAACACAACATCAAACTGTATCTATGAATCAAATGCAACAAGAAATGGTGCATACACATGATGTTAGAACCTCTGATCATCAACTCATATCTTCAATAAAACCCAGCATTTCAAACAGTCCCCCGGCTTACTCGGAAGCAAGAGATAGCAGTGGACAAACAAAGATGAATAATTTTGATTTGAATGACATATATGTTGACTCAGATGATGGAACGGAAGATCTAGAAAGACTGCCCGTCTCTACAAATCTTGCTACTAGCTCTGTTGACTACCCTTGGACACAACAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCTAGCGGAGAAGCCCAGAGTCGCACAGACCGAATTGTTTTTAAACTCTTCGGTAAAGAGCCAAATGAATTTCCTCTTGTACTTAGAGCACAGATTCTAGATTGGTTATCCCACAGTCCTACTGATATTGAGAGCTACATACGCCCTGGTTGTATTGTTTTGACCATTTATCTGCGTCAGGCCGAGGCTGTGTGGGAGGAACTTTGCTGTGATCTGACTTCCAGTTTGATTAAGCTGCTGGATGTCTCAGATGATACGTTTTGGAAAACTGGATGGGTTCATATCAGAGTGCAACATCAAATGGCATTCATTTTCAACGGTCAAGTTGTCATAGATACATCACTACCTTTCCGAAGCAACAATTATAGCAAAATTTGGACTGTTAGTCCAATTGCTGTACCGGCATCAAAGAGAGCTCAATTTTCTGTTAAAGGTGTCAACCTGATGCGCCCTGCCACAAGGTTAATGTGTGCTTTAGAAGGAAAATATCTGGTCTGTGAAGATGCTCATGAGTCAACGGATCAATACTCCGAGGAGCTTGATGAACTTCAGTGCATCCAATTTTCATGTTCTGTACCTGTGACAAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTCTTTCCTTTCATAGTGGCAGAAGAGGATGTTTGCTCAGAGATCCGCGTGCTTGAACCTCTACTAGAATCAAGTGAAACTGATCCAGATATTGAAGGGACTGGAAAAATTAAAGCCAAAAGTCAAGCTATGGATTTCATTCATGAAATGGGCTGGCTTCTTCACAGAAGCCAATTGAAATATAGGATGGTTAACTTGAACTCTGGTGTAGATCTCTTTCCATTAGAACGGTTCACATGGCTTATGGAGTTTTCAATGGACCATGATTGGTGTGCAGTGGTGAAAAAACTGTTGAACCTACTCTTTGATGAAACTGTTAATAAAGGAGATCACCCTACATTGTATCAAGCACTTTCAGAGACGGGTCTTCTTCACAGAGCTGTAAGGAGAAATAGCAAACAGTTAGTGGAGCTGCTTTTGCGATATGTTCCTGACAATACATCTGATGAACTAGGACCCAAAGACAAGGCGCTTGTTGGTGGAAAGAATCATAGCTACTTGTTTAGACCTGATGCTGTTGGTCCTGCCGGTTTGACACCACTTCATATAGCAGCGGGAAAAGATGGTTCCGAGGATGTACTGGATGCTCTGACTAATGATCCTTGCATGGTGGGAATTGAGGCATGGAAGAATGCCCGTGACAGTACAGGCTCCACACCTGAGGATTATGCGCGATTACGTGGCCATTATACTTACATTCACTTAGTGCAGAAAAAAATTAACAAAACACAAGGAGCAGCTCATGTGGTGGTTGAGATTCCCATCAATACGACAGAGAGCAATAAAACCCCGAAGCAAAATGAGTCATTCACTAGCTTAGAGATTGGAAAAGCTGAAGTAAGACGTAGCCGAGGGAACTGTAAACTTTGTGATACCAAAATTTCTTGTAGAACTGCAGTAGGAAGGTCTATGGTATACAGACCTGCAATGCTCTCTATGGTGGCCATAGCAGCGGTCTGTGTTTGTGTGGCTCTTCTGTTTAAGAGCTCACCCGAAGTTCTATACATGTTCCGACCTTTCAGATGGGAATCATTGGAGTTCGGAACAAGCTAA
Protein sequence

>Msa0029550

MGERLGAENYHFYGVGGSSDLSGMGRRSREWNLNDWRWDGDLFIASRVNPVQAESLRVGQQFFPLRSGIPVVGGSSNTSSSCSEEGDLEKGNKEGDRKRRVIVLEDDGLNDEAGALSLNLAGHVSPAVERDGKKSRVAGGTSNRAVCQVEDCGADLSRGKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTNQEAVPNGSPTNDDQTSSYLLISLLKILSNMHSDRSDQPTDQDLLTHLLRSLASQNDEQGSKNLSNLLREQENLLREGGSSRNSGMVSALFSNGSQGSPTVITQHQTVSMNQMQQEMVHTHDVRTSDHQLISSIKPSISNSPPAYSEARDSSGQTKMNNFDLNDIYVDSDDGTEDLERLPVSTNLATSSVDYPWTQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNEFPLVLRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQAEAVWEELCCDLTSSLIKLLDVSDDTFWKTGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKIWTVSPIAVPASKRAQFSVKGVNLMRPATRLMCALEGKYLVCEDAHESTDQYSEELDELQCIQFSCSVPVTNGRGFIEIEDQGLSSSFFPFIVAEEDVCSEIRVLEPLLESSETDPDIEGTGKIKAKSQAMDFIHEMGWLLHRSQLKYRMVNLNSGVDLFPLERFTWLMEFSMDHDWCAVVKKLLNLLFDETVNKGDHPTLYQALSETGLLHRAVRRNSKQLVELLLRYVPDNTSDELGPKDKALVGGKNHSYLFRPDAVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQKKINKTQGAAHVVVEIPINTTESNKTPKQNESFTSLEIGKAEVRRSRGNCKLCDTKISCRTAVGRSMVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYMFRPFRWESLEFGTS*