AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0139240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139240 MtrunA17_Chr1g0158861 98.567 349 5 0 1 349 368 716 0.0 710
Msa0139240 MtrunA17_Chr3g0126541 84.814 349 52 1 1 349 366 713 0.0 620
Msa0139240 MtrunA17_Chr7g0275581 73.699 346 88 2 1 345 371 714 9.27e-171 492
Msa0139240 MtrunA17_Chr4g0073941 66.379 348 111 2 1 348 388 729 5.64e-158 460
Msa0139240 MtrunA17_Chr8g0347121 63.130 377 103 6 1 344 350 723 1.23e-155 454
Msa0139240 MtrunA17_Chr4g0001481 61.756 353 119 4 1 345 393 737 1.77e-147 434
Msa0139240 MtrunA17_Chr3g0139071 60.326 368 118 5 1 349 366 724 2.21e-147 433
Msa0139240 MtrunA17_Chr2g0305771 61.602 362 114 6 1 347 336 687 3.47e-147 431
Msa0139240 MtrunA17_Chr2g0326871 60.623 353 122 4 1 347 362 703 3.53e-142 419
Msa0139240 MtrunA17_Chr1g0181121 58.074 353 142 2 1 347 329 681 2.15e-141 416
Msa0139240 MtrunA17_Chr7g0228181 56.780 354 139 3 1 348 336 681 3.96e-140 413
Msa0139240 MtrunA17_Chr3g0125651 56.077 362 140 3 1 345 328 687 3.75e-137 405
Msa0139240 MtrunA17_Chr4g0028861 70.330 273 81 0 1 273 409 681 3.32e-135 400
Msa0139240 MtrunA17_Chr2g0318561 42.545 275 155 2 5 278 184 456 4.69e-73 234
Msa0139240 MtrunA17_Chr8g0360821 42.182 275 156 2 5 278 361 633 2.73e-72 237
Msa0139240 MtrunA17_Chr7g0218341 40.876 274 157 3 1 272 405 675 2.40e-65 219
Msa0139240 MtrunA17_Chr6g0481021 42.606 284 144 6 1 273 415 690 2.01e-57 197
Msa0139240 MtrunA17_Chr6g0480671 43.729 295 145 7 1 283 480 765 2.16e-54 190
Msa0139240 MtrunA17_Chr6g0480781 39.189 296 159 8 1 283 454 741 1.21e-53 188
Msa0139240 MtrunA17_Chr6g0480851 39.655 290 154 6 1 277 469 750 1.18e-49 177
Msa0139240 MtrunA17_Chr5g0395421 38.603 272 144 6 1 256 100 364 6.53e-45 158
Msa0139240 MtrunA17_Chr6g0480681 36.552 290 160 7 1 277 425 703 1.12e-42 157
Msa0139240 MtrunA17_Chr6g0480741 36.071 280 157 6 1 266 397 668 4.03e-40 149
Msa0139240 MtrunA17_Chr6g0480771 34.921 252 141 7 33 271 12 253 2.00e-37 135
Msa0139240 MtrunA17_Chr6g0480841 39.196 199 99 6 87 271 2 192 7.87e-34 124
Msa0139240 MtrunA17_Chr2g0326851 48.630 146 50 5 212 347 3 133 3.43e-33 120
Msa0139240 MtrunA17_Chr2g0277651 23.600 250 177 6 1 244 276 517 9.61e-12 66.2
Msa0139240 MtrunA17_Chr4g0063141 23.034 178 134 2 14 190 266 441 7.05e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139240 AT5G53130.1 84.241 349 54 1 1 348 368 716 0.0 593
Msa0139240 AT4G01010.1 68.678 348 95 3 1 345 356 692 6.86e-172 494
Msa0139240 AT4G01010.2 68.678 348 95 3 1 345 356 692 6.86e-172 494
Msa0139240 AT1G01340.2 66.573 356 108 3 1 348 355 707 1.48e-167 484
Msa0139240 AT1G01340.1 66.573 356 108 3 1 348 350 702 1.51e-167 484
Msa0139240 AT2G46430.1 66.286 350 113 4 1 348 359 705 5.36e-163 472
Msa0139240 AT2G46430.2 66.286 350 113 4 1 348 359 705 5.36e-163 472
Msa0139240 AT4G30560.5 66.092 348 107 2 1 348 369 705 7.74e-163 472
Msa0139240 AT4G30560.2 66.092 348 107 2 1 348 369 705 7.74e-163 472
Msa0139240 AT4G30560.3 66.092 348 107 2 1 348 369 705 7.74e-163 472
Msa0139240 AT2G23980.6 65.625 352 118 2 1 349 369 720 9.31e-163 472
Msa0139240 AT4G30560.1 66.092 348 107 2 1 348 395 731 9.39e-163 473
Msa0139240 AT4G30560.4 66.092 348 107 2 1 348 395 731 9.39e-163 473
Msa0139240 AT2G23980.9 65.625 352 118 2 1 349 396 747 1.41e-162 473
Msa0139240 AT2G23980.10 65.625 352 118 2 1 349 396 747 1.41e-162 473
Msa0139240 AT2G23980.1 65.625 352 118 2 1 349 396 747 1.41e-162 473
Msa0139240 AT2G23980.4 65.625 352 118 2 1 349 396 747 1.41e-162 473
Msa0139240 AT2G23980.5 65.625 352 118 2 1 349 396 747 1.41e-162 473
Msa0139240 AT2G23980.3 65.625 352 118 2 1 349 419 770 2.58e-162 473
Msa0139240 AT2G23980.2 65.625 352 118 2 1 349 419 770 2.58e-162 473
Msa0139240 AT2G23980.8 65.625 352 118 2 1 349 419 770 2.58e-162 473
Msa0139240 AT2G23980.7 65.625 352 118 2 1 349 419 770 2.58e-162 473
Msa0139240 AT5G57940.3 65.130 347 112 3 1 347 373 710 7.55e-160 464
Msa0139240 AT5G57940.1 65.130 347 112 3 1 347 380 717 9.01e-160 464
Msa0139240 AT5G57940.2 65.130 347 112 3 1 347 380 717 9.01e-160 464
Msa0139240 AT1G19780.2 60.705 369 116 5 1 347 179 540 7.37e-157 451
Msa0139240 AT1G19780.1 60.705 369 116 5 1 347 390 751 1.53e-154 452
Msa0139240 AT1G15990.1 62.396 359 113 3 1 344 384 735 4.27e-154 451
Msa0139240 AT2G24610.1 59.249 373 118 6 1 348 363 726 2.39e-146 431
Msa0139240 AT2G24610.2 59.249 373 118 6 1 348 378 741 1.02e-145 429
Msa0139240 AT4G30360.1 58.127 363 130 4 1 348 363 718 1.91e-143 423
Msa0139240 AT2G28260.2 60.807 347 115 2 1 347 313 638 1.01e-142 418
Msa0139240 AT2G28260.1 60.807 347 115 2 1 347 353 678 2.34e-142 419
Msa0139240 AT3G48010.1 56.334 371 130 5 1 344 339 704 1.11e-138 410
Msa0139240 AT5G14870.1 52.674 374 152 2 1 349 331 704 6.20e-133 395
Msa0139240 AT2G46440.2 60.261 307 118 3 1 305 139 443 9.53e-123 360
Msa0139240 AT2G46440.1 60.261 307 118 3 1 305 317 621 1.52e-120 361
Msa0139240 AT2G46450.3 47.429 350 164 7 1 348 281 612 2.82e-98 303
Msa0139240 AT2G46450.2 47.429 350 164 7 1 348 294 625 3.55e-98 303
Msa0139240 AT2G46450.4 47.429 350 164 7 1 348 317 648 4.97e-98 304
Msa0139240 AT2G46450.1 47.429 350 164 7 1 348 317 648 4.97e-98 304
Msa0139240 AT5G54250.2 40.727 275 160 2 5 278 382 654 2.91e-68 227
Msa0139240 AT5G54250.1 40.727 275 160 2 5 278 382 654 2.91e-68 227
Msa0139240 AT5G54250.4 40.727 275 160 2 5 278 382 654 2.91e-68 227
Msa0139240 AT5G15410.1 40.075 267 157 2 1 266 413 677 4.44e-63 214
Msa0139240 AT5G15410.2 40.075 267 157 2 1 266 412 676 4.96e-63 213
Msa0139240 AT5G54250.3 39.636 275 158 3 5 278 382 649 7.43e-63 212
Msa0139240 AT3G17690.1 42.958 284 145 6 1 275 443 718 8.42e-62 210
Msa0139240 AT3G17700.1 43.165 278 138 6 1 266 476 745 3.11e-53 187
Msa0139240 AT3G17690.2 44.949 198 102 2 1 198 443 633 4.08e-47 169
Msa0139240 AT3G17700.2 45.098 204 104 3 1 204 476 671 4.37e-41 153
Msa0139240 AT3G17690.3 47.297 74 39 0 1 74 443 516 7.70e-14 72.8

Find 88 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGTCCCTTCGTAAATCTT+TGG 0.225780 1_3:+72816201 None:intergenic
GGTGCCAATGTTTGAGAAAA+TGG 0.231224 1_3:-72815946 Msa0139240:CDS
GCATGTTCACCTTTCTTATA+TGG 0.239411 1_3:+72815160 None:intergenic
GTGCCACCATATATGCTTCT+AGG 0.243974 1_3:-72815395 Msa0139240:CDS
GCACGTTCACCTTTCCTATA+TGG 0.272191 1_3:+72815111 None:intergenic
TCTGACTGTCCTAGTGGATA+TGG 0.273875 1_3:+72815677 None:intergenic
CGGTACTTGTTGCGAGGTTC+TGG 0.276542 1_3:+72817480 None:intergenic
GAAAATGGACGAACAACTTT+TGG 0.287502 1_3:-72815931 Msa0139240:CDS
TCAGTAAAGTTAGGTTCTTC+AGG 0.324654 1_3:+72815279 None:intergenic
TCGTCCACCGTTAGTTGTTA+TGG 0.326544 1_3:+72815797 None:intergenic
AATGACATTTCGCTAGAATA+TGG 0.328088 1_3:-72815186 Msa0139240:three_prime_UTR
ATATGTCTGGTTTATTAGTT+AGG 0.335153 1_3:-72815223 Msa0139240:three_prime_UTR
TTTCATTGCCATAGCTGGTT+TGG 0.336143 1_3:-72817432 Msa0139240:CDS
TGGAGGAGATGAGAGTAAAA+AGG 0.337050 1_3:-72816354 Msa0139240:CDS
AATGACATTTCGCTAGAATA+TGG 0.337261 1_3:-72815137 Msa0139240:three_prime_UTR
ATGTCCCTTCGTAAATCTTT+GGG 0.340668 1_3:+72816202 None:intergenic
TGTTCATCATCAGTAAAGTT+AGG 0.374133 1_3:+72815270 None:intergenic
AGTTTGTGGCGTCTCAATTC+CGG 0.377546 1_3:-72815608 Msa0139240:CDS
AGCAAACCTAGAAGCATATA+TGG 0.380387 1_3:+72815389 None:intergenic
GTATGAGGTACGAGGATCTA+AGG 0.391846 1_3:+72815707 None:intergenic
ACAACTAACGGTGGACGAAC+CGG 0.400574 1_3:-72815792 Msa0139240:CDS
CGCTTGTTGAAGAGGAGAAC+AGG 0.400959 1_3:-72815464 Msa0139240:CDS
ATTGTCTTCATTTACACCTC+TGG 0.409038 1_3:+72816240 None:intergenic
CTAGAATATGGTGTCCATAT+AGG 0.410651 1_3:-72815125 Msa0139240:three_prime_UTR
ATCGCCTGATTCGCTCTCTA+AGG 0.411321 1_3:+72816287 None:intergenic
ACGACCTTAGAGAGCGAATC+AGG 0.416499 1_3:-72816291 Msa0139240:CDS
GGTGGTAACACAACAAGTTT+AGG 0.421985 1_3:-72815417 Msa0139240:CDS
CATCAACAGGATCTCCTTCT+CGG 0.424058 1_3:+72815853 None:intergenic
ATCCTTTATCGCAGCTCTCT+TGG 0.429616 1_3:-72817503 None:intergenic
ATGAAGAGCATCTCATCAAC+AGG 0.441941 1_3:+72815840 None:intergenic
GGCGAAGCTGCTTGCTATGA+AGG 0.445260 1_3:+72815583 None:intergenic
CTTTGTTCTGTGTAAAGCAC+TGG 0.448534 1_3:+72815885 None:intergenic
CATTAAGCGTCATCTTTGCT+TGG 0.450954 1_3:-72816182 Msa0139240:CDS
GCAGTCAACACAAACAAGAT+TGG 0.455370 1_3:-72816374 Msa0139240:CDS
ACTCGCAACACTGGCGCACA+TGG 0.461550 1_3:-72815545 Msa0139240:CDS
TAGTATACAGTTAATGTGAT+TGG 0.469387 1_3:-72815246 Msa0139240:three_prime_UTR
ATTCGCTCTCTAAGGTCGTC+AGG 0.477844 1_3:+72816295 None:intergenic
CTGACTGTCCTAGTGGATAT+GGG 0.484519 1_3:+72815678 None:intergenic
ATTCCTCATTGGAAATATGC+AGG 0.487391 1_3:-72817399 Msa0139240:intron
TGAAGAGTCGCTTGTTGAAG+AGG 0.497828 1_3:-72815472 Msa0139240:CDS
GGCGATATGATCAGTACAAA+TGG 0.500306 1_3:-72816270 Msa0139240:CDS
TTAATGTGATTGGATATGTC+TGG 0.506495 1_3:-72815236 Msa0139240:three_prime_UTR
GGATATGGGAAGGTTGTATG+AGG 0.507004 1_3:+72815692 None:intergenic
TCTGGTTTATTAGTTAGGAA+TGG 0.519034 1_3:-72815218 Msa0139240:three_prime_UTR
GTGGCACCGCAAGGAAGACA+AGG 0.523914 1_3:-72815338 Msa0139240:CDS
GGCTTCTGAAGCAATATAGC+AGG 0.526443 1_3:+72815300 None:intergenic
GTGGAGAGGAGCTTCTCACA+TGG 0.528018 1_3:-72815731 Msa0139240:CDS
AAATAACACCAAACCAGCTA+TGG 0.540804 1_3:+72817424 None:intergenic
GAACAGGCTGAAAGATGCAT+TGG 0.540920 1_3:-72815448 Msa0139240:CDS
AGCCGACGATCTGAAGTTTG+TGG 0.543664 1_3:-72815622 Msa0139240:CDS
CAAAGCTATGTTGTCCGAGA+AGG 0.555754 1_3:-72815867 Msa0139240:CDS
CTCGCAACACTGGCGCACAT+GGG 0.563347 1_3:-72815544 Msa0139240:CDS
TTGCTTGGATTTGTTGATGA+GGG 0.566651 1_3:-72816167 Msa0139240:intron
TTAAAAGCCGGCGACTTCTG+TGG 0.572247 1_3:-72815750 Msa0139240:CDS
TGGAGAGGAGCTTCTCACAT+GGG 0.577199 1_3:-72815730 Msa0139240:CDS
ATATGGCGTCCATATAAGAA+AGG 0.577453 1_3:-72815169 Msa0139240:three_prime_UTR
TCGCAACAATCTGAGTGCAT+TGG 0.579349 1_3:+72815365 None:intergenic
GCTGCTTGCTATGAAGGCGC+CGG 0.580467 1_3:+72815589 None:intergenic
AATTCCGAGTACTTAAAAGC+CGG 0.588433 1_3:-72815762 Msa0139240:CDS
AAAGATGCATTGGCAAAGAC+TGG 0.590404 1_3:-72815438 Msa0139240:CDS
TTTGCTTGGATTTGTTGATG+AGG 0.591329 1_3:-72816168 Msa0139240:CDS
CTCAGATTGTTGCGACGAAG+TGG 0.591673 1_3:-72815357 Msa0139240:CDS
GTACTCGGAATTGAAGAAGC+CGG 0.591678 1_3:+72815773 None:intergenic
TCAGATTCTACTCGCAACAC+TGG 0.594194 1_3:-72815554 Msa0139240:CDS
GTCAACACAAACAAGATTGG+AGG 0.594465 1_3:-72816371 Msa0139240:CDS
CGCCACAAACTTCAGATCGT+CGG 0.602536 1_3:+72815620 None:intergenic
GATTGTTCTGACTGTCCTAG+TGG 0.606259 1_3:+72815671 None:intergenic
ATCTTCCCAAAGATTTACGA+AGG 0.609074 1_3:-72816207 Msa0139240:CDS
AGCCGGCGACTTCTGTGGAG+AGG 0.619188 1_3:-72815745 Msa0139240:CDS
TAGTGCCCTTGTCTTCCTTG+CGG 0.622092 1_3:+72815332 None:intergenic
CTATTGACCATAACAACTAA+CGG 0.624244 1_3:-72815804 Msa0139240:CDS
CTCCTCTCCACAGAAGTCGC+CGG 0.626321 1_3:+72815743 None:intergenic
ATATGGTGTCCATATAGGAA+AGG 0.633894 1_3:-72815120 Msa0139240:three_prime_UTR
TGCGACGAAGTGGCACCGCA+AGG 0.637606 1_3:-72815347 Msa0139240:CDS
CTGTCCTAGTGGATATGGGA+AGG 0.651029 1_3:+72815682 None:intergenic
TGTAAAGCACTGGTTTAAGA+CGG 0.656531 1_3:+72815895 None:intergenic
GAGATGCTCTTCATAATGCG+AGG 0.659582 1_3:-72815831 Msa0139240:CDS
ACAACCTTCCCATATCCACT+AGG 0.664340 1_3:-72815686 Msa0139240:CDS
GATGCATTGGCAAAGACTGG+TGG 0.669183 1_3:-72815435 Msa0139240:CDS
ATACCTGCATATTTCCAATG+AGG 0.676782 1_3:+72817396 None:intergenic
AAAGGAGGGATGCAGAACAG+TGG 0.684120 1_3:-72816336 Msa0139240:CDS
GCGAGTAGAATCTGAAAGTG+TGG 0.692822 1_3:+72815562 None:intergenic
TCTTCCCAAAGATTTACGAA+GGG 0.693374 1_3:-72816206 Msa0139240:CDS
AAACCTAGAAGCATATATGG+TGG 0.700365 1_3:+72815392 None:intergenic
TACAAATGGCAAGAAACCAG+AGG 0.707748 1_3:-72816256 Msa0139240:CDS
TTGACCATAACAACTAACGG+TGG 0.708512 1_3:-72815801 Msa0139240:CDS
TGGCACCGCAAGGAAGACAA+GGG 0.711974 1_3:-72815337 Msa0139240:CDS
GGAAGGTTGTATGAGGTACG+AGG 0.735650 1_3:+72815699 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAATTATAAAACTAAATTT+TGG + chr1_3:72815327-72815346 None:intergenic 10.0%
!!! AGAATTATAAAACTAAATTT+TGG + chr1_3:72815327-72815346 None:intergenic 10.0%
!! TTACAAATAAAGCAAAATAA+GGG - chr1_3:72816012-72816031 Msa0139240:intron 15.0%
!! AAAGAGATGATTAAAAAAAT+TGG + chr1_3:72816455-72816474 None:intergenic 15.0%
!! AAACAAAATATCATTTCTAT+TGG - chr1_3:72816534-72816553 Msa0139240:intron 15.0%
!! TTACAAATAAAGCAAAATAA+GGG - chr1_3:72816012-72816031 Msa0139240:intron 15.0%
!! AAAGAGATGATTAAAAAAAT+TGG + chr1_3:72816455-72816474 None:intergenic 15.0%
!! AAACAAAATATCATTTCTAT+TGG - chr1_3:72816534-72816553 Msa0139240:intron 15.0%
!! TGAATGATTAAAAGAAACTT+TGG + chr1_3:72815230-72815249 None:intergenic 20.0%
!!! TAAATTTTGGAAATCACAAA+AGG + chr1_3:72815314-72815333 None:intergenic 20.0%
!! CTGAAAAAAGAAAAATTGTT+TGG + chr1_3:72815498-72815517 None:intergenic 20.0%
!! TTGTAGAAATAGGAAAATAA+AGG + chr1_3:72815558-72815577 None:intergenic 20.0%
!! ATATCAAGAATTGTAGAAAT+AGG + chr1_3:72815568-72815587 None:intergenic 20.0%
!!! GGTCATAAATGATTTATTTT+AGG + chr1_3:72815655-72815674 None:intergenic 20.0%
!! GTTACAAATAAAGCAAAATA+AGG - chr1_3:72816011-72816030 Msa0139240:intron 20.0%
!!! TTATTAGGTTACTTTATTCT+AGG - chr1_3:72816147-72816166 Msa0139240:intron 20.0%
!!! TACTTTATTCTAGGTTTTAA+CGG - chr1_3:72816156-72816175 Msa0139240:intron 20.0%
!! TGAATGATTAAAAGAAACTT+TGG + chr1_3:72815230-72815249 None:intergenic 20.0%
!!! TAAATTTTGGAAATCACAAA+AGG + chr1_3:72815314-72815333 None:intergenic 20.0%
!! CTGAAAAAAGAAAAATTGTT+TGG + chr1_3:72815498-72815517 None:intergenic 20.0%
!! TTGTAGAAATAGGAAAATAA+AGG + chr1_3:72815558-72815577 None:intergenic 20.0%
!! ATATCAAGAATTGTAGAAAT+AGG + chr1_3:72815568-72815587 None:intergenic 20.0%
!!! GGTCATAAATGATTTATTTT+AGG + chr1_3:72815655-72815674 None:intergenic 20.0%
!! GTTACAAATAAAGCAAAATA+AGG - chr1_3:72816011-72816030 Msa0139240:intron 20.0%
!!! TTATTAGGTTACTTTATTCT+AGG - chr1_3:72816147-72816166 Msa0139240:intron 20.0%
!!! TACTTTATTCTAGGTTTTAA+CGG - chr1_3:72816156-72816175 Msa0139240:intron 20.0%
! AAAACAGATTTCCCAAAAAT+CGG + chr1_3:72815130-72815149 None:intergenic 25.0%
!! AATTTTGTAAACTTGATTGC+CGG - chr1_3:72815277-72815296 Msa0139240:CDS 25.0%
! GAAATCACAAAAGGTAAAAT+GGG + chr1_3:72815305-72815324 None:intergenic 25.0%
! AAATAGGAAAATAAAGGTCA+GGG + chr1_3:72815552-72815571 None:intergenic 25.0%
! TATATTGCATGTTGTAGAAT+CGG + chr1_3:72815676-72815695 None:intergenic 25.0%
!!! TAAACCTTATTTTTCTTCCT+TGG - chr1_3:72815989-72816008 Msa0139240:intron 25.0%
!!! TTTTGCTTTATTTGTAACCA+AGG + chr1_3:72816009-72816028 None:intergenic 25.0%
!!! ATAAGGGACATTTTTTTATC+AGG - chr1_3:72816028-72816047 Msa0139240:intron 25.0%
! TCAAAACTCAAAAACAACTA+TGG + chr1_3:72816079-72816098 None:intergenic 25.0%
! ATATTAATGTGAGTTTCTCA+TGG + chr1_3:72816106-72816125 None:intergenic 25.0%
!!! ATATTTTGTTTGCATTGCAA+GGG + chr1_3:72816525-72816544 None:intergenic 25.0%
! AAGATCAAAGATTACATTGT+TGG - chr1_3:72816557-72816576 Msa0139240:intron 25.0%
! ACACAACAGAGAAAAATATT+TGG + chr1_3:72816611-72816630 None:intergenic 25.0%
! TAGTATACAGTTAATGTGAT+TGG - chr1_3:72817341-72817360 Msa0139240:intron 25.0%
!! ATATGTCTGGTTTATTAGTT+AGG - chr1_3:72817364-72817383 Msa0139240:intron 25.0%
! AAAACAGATTTCCCAAAAAT+CGG + chr1_3:72815130-72815149 None:intergenic 25.0%
!! AATTTTGTAAACTTGATTGC+CGG - chr1_3:72815277-72815296 Msa0139240:CDS 25.0%
! GAAATCACAAAAGGTAAAAT+GGG + chr1_3:72815305-72815324 None:intergenic 25.0%
! AAATAGGAAAATAAAGGTCA+GGG + chr1_3:72815552-72815571 None:intergenic 25.0%
! TATATTGCATGTTGTAGAAT+CGG + chr1_3:72815676-72815695 None:intergenic 25.0%
!!! TAAACCTTATTTTTCTTCCT+TGG - chr1_3:72815989-72816008 Msa0139240:intron 25.0%
!!! TTTTGCTTTATTTGTAACCA+AGG + chr1_3:72816009-72816028 None:intergenic 25.0%
!!! ATAAGGGACATTTTTTTATC+AGG - chr1_3:72816028-72816047 Msa0139240:intron 25.0%
! TCAAAACTCAAAAACAACTA+TGG + chr1_3:72816079-72816098 None:intergenic 25.0%
! ATATTAATGTGAGTTTCTCA+TGG + chr1_3:72816106-72816125 None:intergenic 25.0%
!!! ATATTTTGTTTGCATTGCAA+GGG + chr1_3:72816525-72816544 None:intergenic 25.0%
! AAGATCAAAGATTACATTGT+TGG - chr1_3:72816557-72816576 Msa0139240:intron 25.0%
! ACACAACAGAGAAAAATATT+TGG + chr1_3:72816611-72816630 None:intergenic 25.0%
! TAGTATACAGTTAATGTGAT+TGG - chr1_3:72817341-72817360 Msa0139240:intron 25.0%
!! ATATGTCTGGTTTATTAGTT+AGG - chr1_3:72817364-72817383 Msa0139240:intron 25.0%
!!! GTGTTATTTTCATTCCTCAT+TGG - chr1_3:72815177-72815196 Msa0139240:three_prime_UTR 30.0%
GGAAATCACAAAAGGTAAAA+TGG + chr1_3:72815306-72815325 None:intergenic 30.0%
AGATAATACCCCAAAATTTC+AGG - chr1_3:72815387-72815406 Msa0139240:CDS 30.0%
! AAACAAGACCTGAAATTTTG+GGG + chr1_3:72815398-72815417 None:intergenic 30.0%
! CAAACAAGACCTGAAATTTT+GGG + chr1_3:72815399-72815418 None:intergenic 30.0%
! TCAAACAAGACCTGAAATTT+TGG + chr1_3:72815400-72815419 None:intergenic 30.0%
GAAATAGGAAAATAAAGGTC+AGG + chr1_3:72815553-72815572 None:intergenic 30.0%
GAAGTTGAATTGTTCATGTA+TGG - chr1_3:72815597-72815616 Msa0139240:CDS 30.0%
! TTTTCTACGCATGAAAACAA+AGG + chr1_3:72815711-72815730 None:intergenic 30.0%
! TGCGTAGAAAATTTTGTAGT+AGG - chr1_3:72815720-72815739 Msa0139240:CDS 30.0%
! GCGTAGAAAATTTTGTAGTA+GGG - chr1_3:72815721-72815740 Msa0139240:CDS 30.0%
! GAAAATTTTGTAGTAGGGAA+TGG - chr1_3:72815726-72815745 Msa0139240:CDS 30.0%
! GAAATTTTTACGCGTATACA+TGG + chr1_3:72815802-72815821 None:intergenic 30.0%
!!! ATTTCGCAGTTGAGATTTTT+TGG - chr1_3:72815817-72815836 Msa0139240:CDS 30.0%
ATCATAGCTGATGAACTTAA+TGG + chr1_3:72815884-72815903 None:intergenic 30.0%
ATTAAGTTCATCAGCTATGA+TGG - chr1_3:72815883-72815902 Msa0139240:CDS 30.0%
GTAACCAAGGAAGAAAAATA+AGG + chr1_3:72815996-72816015 None:intergenic 30.0%
!!! CATTTTTTTATCAGGATGGA+AGG - chr1_3:72816036-72816055 Msa0139240:intron 30.0%
!! GATATTTTGTTTGCATTGCA+AGG + chr1_3:72816526-72816545 None:intergenic 30.0%
CTATTGACCATAACAACTAA+CGG - chr1_3:72816783-72816802 Msa0139240:intron 30.0%
TGTTCATCATCAGTAAAGTT+AGG + chr1_3:72817320-72817339 None:intergenic 30.0%
TTAATGTGATTGGATATGTC+TGG - chr1_3:72817351-72817370 Msa0139240:intron 30.0%
! TCTGGTTTATTAGTTAGGAA+TGG - chr1_3:72817369-72817388 Msa0139240:intron 30.0%
AATGACATTTCGCTAGAATA+TGG - chr1_3:72817401-72817420 Msa0139240:CDS 30.0%
AATGACATTTCGCTAGAATA+TGG - chr1_3:72817401-72817420 Msa0139240:CDS 30.0%
!!! GTGTTATTTTCATTCCTCAT+TGG - chr1_3:72815177-72815196 Msa0139240:three_prime_UTR 30.0%
GGAAATCACAAAAGGTAAAA+TGG + chr1_3:72815306-72815325 None:intergenic 30.0%
AGATAATACCCCAAAATTTC+AGG - chr1_3:72815387-72815406 Msa0139240:CDS 30.0%
! AAACAAGACCTGAAATTTTG+GGG + chr1_3:72815398-72815417 None:intergenic 30.0%
! CAAACAAGACCTGAAATTTT+GGG + chr1_3:72815399-72815418 None:intergenic 30.0%
! TCAAACAAGACCTGAAATTT+TGG + chr1_3:72815400-72815419 None:intergenic 30.0%
GAAATAGGAAAATAAAGGTC+AGG + chr1_3:72815553-72815572 None:intergenic 30.0%
GAAGTTGAATTGTTCATGTA+TGG - chr1_3:72815597-72815616 Msa0139240:CDS 30.0%
! TTTTCTACGCATGAAAACAA+AGG + chr1_3:72815711-72815730 None:intergenic 30.0%
! TGCGTAGAAAATTTTGTAGT+AGG - chr1_3:72815720-72815739 Msa0139240:CDS 30.0%
! GCGTAGAAAATTTTGTAGTA+GGG - chr1_3:72815721-72815740 Msa0139240:CDS 30.0%
! GAAAATTTTGTAGTAGGGAA+TGG - chr1_3:72815726-72815745 Msa0139240:CDS 30.0%
! GAAATTTTTACGCGTATACA+TGG + chr1_3:72815802-72815821 None:intergenic 30.0%
!!! ATTTCGCAGTTGAGATTTTT+TGG - chr1_3:72815817-72815836 Msa0139240:CDS 30.0%
ATCATAGCTGATGAACTTAA+TGG + chr1_3:72815884-72815903 None:intergenic 30.0%
ATTAAGTTCATCAGCTATGA+TGG - chr1_3:72815883-72815902 Msa0139240:CDS 30.0%
GTAACCAAGGAAGAAAAATA+AGG + chr1_3:72815996-72816015 None:intergenic 30.0%
!!! CATTTTTTTATCAGGATGGA+AGG - chr1_3:72816036-72816055 Msa0139240:intron 30.0%
!! GATATTTTGTTTGCATTGCA+AGG + chr1_3:72816526-72816545 None:intergenic 30.0%
CTATTGACCATAACAACTAA+CGG - chr1_3:72816783-72816802 Msa0139240:intron 30.0%
TGTTCATCATCAGTAAAGTT+AGG + chr1_3:72817320-72817339 None:intergenic 30.0%
TTAATGTGATTGGATATGTC+TGG - chr1_3:72817351-72817370 Msa0139240:intron 30.0%
! TCTGGTTTATTAGTTAGGAA+TGG - chr1_3:72817369-72817388 Msa0139240:intron 30.0%
AATGACATTTCGCTAGAATA+TGG - chr1_3:72817401-72817420 Msa0139240:CDS 30.0%
AATGACATTTCGCTAGAATA+TGG - chr1_3:72817401-72817420 Msa0139240:CDS 30.0%
AAATAACACCAAACCAGCTA+TGG + chr1_3:72815166-72815185 None:intergenic 35.0%
ATTCCTCATTGGAAATATGC+AGG - chr1_3:72815188-72815207 Msa0139240:three_prime_UTR 35.0%
ATACCTGCATATTTCCAATG+AGG + chr1_3:72815194-72815213 None:intergenic 35.0%
!! GGTCTTGTTTGATTGTGATT+TGG - chr1_3:72815408-72815427 Msa0139240:CDS 35.0%
!!! GGGACATTTTTTTATCAGGA+TGG - chr1_3:72816032-72816051 Msa0139240:intron 35.0%
! TTTTTATCAGGATGGAAGGA+AGG - chr1_3:72816040-72816059 Msa0139240:intron 35.0%
! ACCTGTGTTGTGCTTTTATT+AGG - chr1_3:72816132-72816151 Msa0139240:intron 35.0%
! ACCTAATAAAAGCACAACAC+AGG + chr1_3:72816136-72816155 None:intergenic 35.0%
ATTGTCTTCATTTACACCTC+TGG + chr1_3:72816350-72816369 None:intergenic 35.0%
ATCTTCCCAAAGATTTACGA+AGG - chr1_3:72816380-72816399 Msa0139240:CDS 35.0%
TCTTCCCAAAGATTTACGAA+GGG - chr1_3:72816381-72816400 Msa0139240:CDS 35.0%
ATGTCCCTTCGTAAATCTTT+GGG + chr1_3:72816388-72816407 None:intergenic 35.0%
AATGTCCCTTCGTAAATCTT+TGG + chr1_3:72816389-72816408 None:intergenic 35.0%
!! TTTGCTTGGATTTGTTGATG+AGG - chr1_3:72816419-72816438 Msa0139240:intron 35.0%
!! TTGCTTGGATTTGTTGATGA+GGG - chr1_3:72816420-72816439 Msa0139240:intron 35.0%
CTCTGTTGTGTATGAACTTT+AGG - chr1_3:72816620-72816639 Msa0139240:intron 35.0%
! TCGTCCATTTTCTCAAACAT+TGG + chr1_3:72816648-72816667 None:intergenic 35.0%
! GAAAATGGACGAACAACTTT+TGG - chr1_3:72816656-72816675 Msa0139240:intron 35.0%
!! TGTAAAGCACTGGTTTAAGA+CGG + chr1_3:72816695-72816714 None:intergenic 35.0%
AATTCCGAGTACTTAAAAGC+CGG - chr1_3:72816825-72816844 Msa0139240:intron 35.0%
! CATGTTTTATACAAGCTGCA+TGG - chr1_3:72817069-72817088 Msa0139240:intron 35.0%
! AAACCTAGAAGCATATATGG+TGG + chr1_3:72817198-72817217 None:intergenic 35.0%
! AGCAAACCTAGAAGCATATA+TGG + chr1_3:72817201-72817220 None:intergenic 35.0%
TCAGTAAAGTTAGGTTCTTC+AGG + chr1_3:72817311-72817330 None:intergenic 35.0%
ATATGGCGTCCATATAAGAA+AGG - chr1_3:72817418-72817437 Msa0139240:CDS 35.0%
GCATGTTCACCTTTCTTATA+TGG + chr1_3:72817430-72817449 None:intergenic 35.0%
CTAGAATATGGTGTCCATAT+AGG - chr1_3:72817462-72817481 Msa0139240:CDS 35.0%
ATATGGTGTCCATATAGGAA+AGG - chr1_3:72817467-72817486 Msa0139240:CDS 35.0%
AAATAACACCAAACCAGCTA+TGG + chr1_3:72815166-72815185 None:intergenic 35.0%
ATTCCTCATTGGAAATATGC+AGG - chr1_3:72815188-72815207 Msa0139240:three_prime_UTR 35.0%
ATACCTGCATATTTCCAATG+AGG + chr1_3:72815194-72815213 None:intergenic 35.0%
!! GGTCTTGTTTGATTGTGATT+TGG - chr1_3:72815408-72815427 Msa0139240:CDS 35.0%
!!! GGGACATTTTTTTATCAGGA+TGG - chr1_3:72816032-72816051 Msa0139240:intron 35.0%
! TTTTTATCAGGATGGAAGGA+AGG - chr1_3:72816040-72816059 Msa0139240:intron 35.0%
! ACCTGTGTTGTGCTTTTATT+AGG - chr1_3:72816132-72816151 Msa0139240:intron 35.0%
! ACCTAATAAAAGCACAACAC+AGG + chr1_3:72816136-72816155 None:intergenic 35.0%
ATTGTCTTCATTTACACCTC+TGG + chr1_3:72816350-72816369 None:intergenic 35.0%
ATCTTCCCAAAGATTTACGA+AGG - chr1_3:72816380-72816399 Msa0139240:CDS 35.0%
TCTTCCCAAAGATTTACGAA+GGG - chr1_3:72816381-72816400 Msa0139240:CDS 35.0%
ATGTCCCTTCGTAAATCTTT+GGG + chr1_3:72816388-72816407 None:intergenic 35.0%
AATGTCCCTTCGTAAATCTT+TGG + chr1_3:72816389-72816408 None:intergenic 35.0%
!! TTTGCTTGGATTTGTTGATG+AGG - chr1_3:72816419-72816438 Msa0139240:intron 35.0%
!! TTGCTTGGATTTGTTGATGA+GGG - chr1_3:72816420-72816439 Msa0139240:intron 35.0%
CTCTGTTGTGTATGAACTTT+AGG - chr1_3:72816620-72816639 Msa0139240:intron 35.0%
! TCGTCCATTTTCTCAAACAT+TGG + chr1_3:72816648-72816667 None:intergenic 35.0%
! GAAAATGGACGAACAACTTT+TGG - chr1_3:72816656-72816675 Msa0139240:intron 35.0%
!! TGTAAAGCACTGGTTTAAGA+CGG + chr1_3:72816695-72816714 None:intergenic 35.0%
AATTCCGAGTACTTAAAAGC+CGG - chr1_3:72816825-72816844 Msa0139240:intron 35.0%
! CATGTTTTATACAAGCTGCA+TGG - chr1_3:72817069-72817088 Msa0139240:intron 35.0%
! AAACCTAGAAGCATATATGG+TGG + chr1_3:72817198-72817217 None:intergenic 35.0%
! AGCAAACCTAGAAGCATATA+TGG + chr1_3:72817201-72817220 None:intergenic 35.0%
TCAGTAAAGTTAGGTTCTTC+AGG + chr1_3:72817311-72817330 None:intergenic 35.0%
ATATGGCGTCCATATAAGAA+AGG - chr1_3:72817418-72817437 Msa0139240:CDS 35.0%
GCATGTTCACCTTTCTTATA+TGG + chr1_3:72817430-72817449 None:intergenic 35.0%
CTAGAATATGGTGTCCATAT+AGG - chr1_3:72817462-72817481 Msa0139240:CDS 35.0%
ATATGGTGTCCATATAGGAA+AGG - chr1_3:72817467-72817486 Msa0139240:CDS 35.0%
! AAAAATCGGTACTTGTTGCG+AGG + chr1_3:72815116-72815135 None:intergenic 40.0%
!!! TCGCAACAAGTACCGATTTT+TGG - chr1_3:72815115-72815134 Msa0139240:three_prime_UTR 40.0%
!!! CGCAACAAGTACCGATTTTT+GGG - chr1_3:72815116-72815135 Msa0139240:three_prime_UTR 40.0%
! GCAATTTTCATTGCCATAGC+TGG - chr1_3:72815150-72815169 Msa0139240:three_prime_UTR 40.0%
TTTCATTGCCATAGCTGGTT+TGG - chr1_3:72815155-72815174 Msa0139240:three_prime_UTR 40.0%
ACAAAAGGTAAAATGGGCAC+CGG + chr1_3:72815299-72815318 None:intergenic 40.0%
GCAGTCAACACAAACAAGAT+TGG - chr1_3:72816213-72816232 Msa0139240:CDS 40.0%
GTCAACACAAACAAGATTGG+AGG - chr1_3:72816216-72816235 Msa0139240:CDS 40.0%
TGGAGGAGATGAGAGTAAAA+AGG - chr1_3:72816233-72816252 Msa0139240:CDS 40.0%
AGGAGATGAGAGTAAAAAGG+AGG - chr1_3:72816236-72816255 Msa0139240:CDS 40.0%
GGAGATGAGAGTAAAAAGGA+GGG - chr1_3:72816237-72816256 Msa0139240:CDS 40.0%
GGCGATATGATCAGTACAAA+TGG - chr1_3:72816317-72816336 Msa0139240:CDS 40.0%
TACAAATGGCAAGAAACCAG+AGG - chr1_3:72816331-72816350 Msa0139240:CDS 40.0%
CATTAAGCGTCATCTTTGCT+TGG - chr1_3:72816405-72816424 Msa0139240:intron 40.0%
GGTGCCAATGTTTGAGAAAA+TGG - chr1_3:72816641-72816660 Msa0139240:intron 40.0%
CTTTGTTCTGTGTAAAGCAC+TGG + chr1_3:72816705-72816724 None:intergenic 40.0%
!! ATGAAGAGCATCTCATCAAC+AGG + chr1_3:72816750-72816769 None:intergenic 40.0%
TTGACCATAACAACTAACGG+TGG - chr1_3:72816786-72816805 Msa0139240:intron 40.0%
! GTTTTATACAAGCTGCATGG+AGG - chr1_3:72817072-72817091 Msa0139240:intron 40.0%
! AAAGATGCATTGGCAAAGAC+TGG - chr1_3:72817149-72817168 Msa0139240:intron 40.0%
GGTGGTAACACAACAAGTTT+AGG - chr1_3:72817170-72817189 Msa0139240:intron 40.0%
! AAAAATCGGTACTTGTTGCG+AGG + chr1_3:72815116-72815135 None:intergenic 40.0%
!!! TCGCAACAAGTACCGATTTT+TGG - chr1_3:72815115-72815134 Msa0139240:three_prime_UTR 40.0%
!!! CGCAACAAGTACCGATTTTT+GGG - chr1_3:72815116-72815135 Msa0139240:three_prime_UTR 40.0%
! GCAATTTTCATTGCCATAGC+TGG - chr1_3:72815150-72815169 Msa0139240:three_prime_UTR 40.0%
TTTCATTGCCATAGCTGGTT+TGG - chr1_3:72815155-72815174 Msa0139240:three_prime_UTR 40.0%
ACAAAAGGTAAAATGGGCAC+CGG + chr1_3:72815299-72815318 None:intergenic 40.0%
GCAGTCAACACAAACAAGAT+TGG - chr1_3:72816213-72816232 Msa0139240:CDS 40.0%
GTCAACACAAACAAGATTGG+AGG - chr1_3:72816216-72816235 Msa0139240:CDS 40.0%
TGGAGGAGATGAGAGTAAAA+AGG - chr1_3:72816233-72816252 Msa0139240:CDS 40.0%
AGGAGATGAGAGTAAAAAGG+AGG - chr1_3:72816236-72816255 Msa0139240:CDS 40.0%
GGAGATGAGAGTAAAAAGGA+GGG - chr1_3:72816237-72816256 Msa0139240:CDS 40.0%
GGCGATATGATCAGTACAAA+TGG - chr1_3:72816317-72816336 Msa0139240:CDS 40.0%
TACAAATGGCAAGAAACCAG+AGG - chr1_3:72816331-72816350 Msa0139240:CDS 40.0%
CATTAAGCGTCATCTTTGCT+TGG - chr1_3:72816405-72816424 Msa0139240:intron 40.0%
GGTGCCAATGTTTGAGAAAA+TGG - chr1_3:72816641-72816660 Msa0139240:intron 40.0%
CTTTGTTCTGTGTAAAGCAC+TGG + chr1_3:72816705-72816724 None:intergenic 40.0%
!! ATGAAGAGCATCTCATCAAC+AGG + chr1_3:72816750-72816769 None:intergenic 40.0%
TTGACCATAACAACTAACGG+TGG - chr1_3:72816786-72816805 Msa0139240:intron 40.0%
! GTTTTATACAAGCTGCATGG+AGG - chr1_3:72817072-72817091 Msa0139240:intron 40.0%
! AAAGATGCATTGGCAAAGAC+TGG - chr1_3:72817149-72817168 Msa0139240:intron 40.0%
GGTGGTAACACAACAAGTTT+AGG - chr1_3:72817170-72817189 Msa0139240:intron 40.0%
CAAAGCTATGTTGTCCGAGA+AGG - chr1_3:72816720-72816739 Msa0139240:intron 45.0%
CATCAACAGGATCTCCTTCT+CGG + chr1_3:72816737-72816756 None:intergenic 45.0%
GAGATGCTCTTCATAATGCG+AGG - chr1_3:72816756-72816775 Msa0139240:intron 45.0%
TCGTCCACCGTTAGTTGTTA+TGG + chr1_3:72816793-72816812 None:intergenic 45.0%
GTACTCGGAATTGAAGAAGC+CGG + chr1_3:72816817-72816836 None:intergenic 45.0%
GTATGAGGTACGAGGATCTA+AGG + chr1_3:72816883-72816902 None:intergenic 45.0%
GGATATGGGAAGGTTGTATG+AGG + chr1_3:72816898-72816917 None:intergenic 45.0%
ACAACCTTCCCATATCCACT+AGG - chr1_3:72816901-72816920 Msa0139240:intron 45.0%
! CTGACTGTCCTAGTGGATAT+GGG + chr1_3:72816912-72816931 None:intergenic 45.0%
! TCTGACTGTCCTAGTGGATA+TGG + chr1_3:72816913-72816932 None:intergenic 45.0%
GATTGTTCTGACTGTCCTAG+TGG + chr1_3:72816919-72816938 None:intergenic 45.0%
AGTTTGTGGCGTCTCAATTC+CGG - chr1_3:72816979-72816998 Msa0139240:intron 45.0%
GCGAGTAGAATCTGAAAGTG+TGG + chr1_3:72817028-72817047 None:intergenic 45.0%
TCAGATTCTACTCGCAACAC+TGG - chr1_3:72817033-72817052 Msa0139240:intron 45.0%
! TGAAGAGTCGCTTGTTGAAG+AGG - chr1_3:72817115-72817134 Msa0139240:intron 45.0%
GAACAGGCTGAAAGATGCAT+TGG - chr1_3:72817139-72817158 Msa0139240:intron 45.0%
GTGCCACCATATATGCTTCT+AGG - chr1_3:72817192-72817211 Msa0139240:intron 45.0%
TCGCAACAATCTGAGTGCAT+TGG + chr1_3:72817225-72817244 None:intergenic 45.0%
!! GGCTTCTGAAGCAATATAGC+AGG + chr1_3:72817290-72817309 None:intergenic 45.0%
GCACGTTCACCTTTCCTATA+TGG + chr1_3:72817479-72817498 None:intergenic 45.0%
CAAAGCTATGTTGTCCGAGA+AGG - chr1_3:72816720-72816739 Msa0139240:intron 45.0%
CATCAACAGGATCTCCTTCT+CGG + chr1_3:72816737-72816756 None:intergenic 45.0%
GAGATGCTCTTCATAATGCG+AGG - chr1_3:72816756-72816775 Msa0139240:intron 45.0%
TCGTCCACCGTTAGTTGTTA+TGG + chr1_3:72816793-72816812 None:intergenic 45.0%
GTACTCGGAATTGAAGAAGC+CGG + chr1_3:72816817-72816836 None:intergenic 45.0%
GTATGAGGTACGAGGATCTA+AGG + chr1_3:72816883-72816902 None:intergenic 45.0%
GGATATGGGAAGGTTGTATG+AGG + chr1_3:72816898-72816917 None:intergenic 45.0%
ACAACCTTCCCATATCCACT+AGG - chr1_3:72816901-72816920 Msa0139240:intron 45.0%
! CTGACTGTCCTAGTGGATAT+GGG + chr1_3:72816912-72816931 None:intergenic 45.0%
! TCTGACTGTCCTAGTGGATA+TGG + chr1_3:72816913-72816932 None:intergenic 45.0%
GATTGTTCTGACTGTCCTAG+TGG + chr1_3:72816919-72816938 None:intergenic 45.0%
AGTTTGTGGCGTCTCAATTC+CGG - chr1_3:72816979-72816998 Msa0139240:intron 45.0%
GCGAGTAGAATCTGAAAGTG+TGG + chr1_3:72817028-72817047 None:intergenic 45.0%
TCAGATTCTACTCGCAACAC+TGG - chr1_3:72817033-72817052 Msa0139240:intron 45.0%
! TGAAGAGTCGCTTGTTGAAG+AGG - chr1_3:72817115-72817134 Msa0139240:intron 45.0%
GAACAGGCTGAAAGATGCAT+TGG - chr1_3:72817139-72817158 Msa0139240:intron 45.0%
GTGCCACCATATATGCTTCT+AGG - chr1_3:72817192-72817211 Msa0139240:intron 45.0%
TCGCAACAATCTGAGTGCAT+TGG + chr1_3:72817225-72817244 None:intergenic 45.0%
!! GGCTTCTGAAGCAATATAGC+AGG + chr1_3:72817290-72817309 None:intergenic 45.0%
GCACGTTCACCTTTCCTATA+TGG + chr1_3:72817479-72817498 None:intergenic 45.0%
TCAGGATGGAAGGAAGGAGA+AGG - chr1_3:72816046-72816065 Msa0139240:intron 50.0%
AAAGGAGGGATGCAGAACAG+TGG - chr1_3:72816251-72816270 Msa0139240:CDS 50.0%
!! ATTCGCTCTCTAAGGTCGTC+AGG + chr1_3:72816295-72816314 None:intergenic 50.0%
ACGACCTTAGAGAGCGAATC+AGG - chr1_3:72816296-72816315 Msa0139240:CDS 50.0%
! ATCGCCTGATTCGCTCTCTA+AGG + chr1_3:72816303-72816322 None:intergenic 50.0%
ACAACTAACGGTGGACGAAC+CGG - chr1_3:72816795-72816814 Msa0139240:intron 50.0%
!!! GTCGCCGGCTTTTAAGTACT+CGG + chr1_3:72816832-72816851 None:intergenic 50.0%
TTAAAAGCCGGCGACTTCTG+TGG - chr1_3:72816837-72816856 Msa0139240:intron 50.0%
TGGAGAGGAGCTTCTCACAT+GGG - chr1_3:72816857-72816876 Msa0139240:intron 50.0%
GGAAGGTTGTATGAGGTACG+AGG + chr1_3:72816891-72816910 None:intergenic 50.0%
! CTGTCCTAGTGGATATGGGA+AGG + chr1_3:72816908-72816927 None:intergenic 50.0%
!!! ATCGTCGGCTTTTAGCGCAA+AGG + chr1_3:72816955-72816974 None:intergenic 50.0%
! AGCCGACGATCTGAAGTTTG+TGG - chr1_3:72816965-72816984 Msa0139240:intron 50.0%
CGCCACAAACTTCAGATCGT+CGG + chr1_3:72816970-72816989 None:intergenic 50.0%
! CGCTTGTTGAAGAGGAGAAC+AGG - chr1_3:72817123-72817142 Msa0139240:intron 50.0%
! GATGCATTGGCAAAGACTGG+TGG - chr1_3:72817152-72817171 Msa0139240:intron 50.0%
CTCAGATTGTTGCGACGAAG+TGG - chr1_3:72817230-72817249 Msa0139240:intron 50.0%
TAGTGCCCTTGTCTTCCTTG+CGG + chr1_3:72817258-72817277 None:intergenic 50.0%
TCAGGATGGAAGGAAGGAGA+AGG - chr1_3:72816046-72816065 Msa0139240:intron 50.0%
AAAGGAGGGATGCAGAACAG+TGG - chr1_3:72816251-72816270 Msa0139240:CDS 50.0%
!! ATTCGCTCTCTAAGGTCGTC+AGG + chr1_3:72816295-72816314 None:intergenic 50.0%
ACGACCTTAGAGAGCGAATC+AGG - chr1_3:72816296-72816315 Msa0139240:CDS 50.0%
! ATCGCCTGATTCGCTCTCTA+AGG + chr1_3:72816303-72816322 None:intergenic 50.0%
ACAACTAACGGTGGACGAAC+CGG - chr1_3:72816795-72816814 Msa0139240:intron 50.0%
!!! GTCGCCGGCTTTTAAGTACT+CGG + chr1_3:72816832-72816851 None:intergenic 50.0%
TTAAAAGCCGGCGACTTCTG+TGG - chr1_3:72816837-72816856 Msa0139240:intron 50.0%
TGGAGAGGAGCTTCTCACAT+GGG - chr1_3:72816857-72816876 Msa0139240:intron 50.0%
GGAAGGTTGTATGAGGTACG+AGG + chr1_3:72816891-72816910 None:intergenic 50.0%
! CTGTCCTAGTGGATATGGGA+AGG + chr1_3:72816908-72816927 None:intergenic 50.0%
!!! ATCGTCGGCTTTTAGCGCAA+AGG + chr1_3:72816955-72816974 None:intergenic 50.0%
! AGCCGACGATCTGAAGTTTG+TGG - chr1_3:72816965-72816984 Msa0139240:intron 50.0%
CGCCACAAACTTCAGATCGT+CGG + chr1_3:72816970-72816989 None:intergenic 50.0%
! CGCTTGTTGAAGAGGAGAAC+AGG - chr1_3:72817123-72817142 Msa0139240:intron 50.0%
! GATGCATTGGCAAAGACTGG+TGG - chr1_3:72817152-72817171 Msa0139240:intron 50.0%
CTCAGATTGTTGCGACGAAG+TGG - chr1_3:72817230-72817249 Msa0139240:intron 50.0%
TAGTGCCCTTGTCTTCCTTG+CGG + chr1_3:72817258-72817277 None:intergenic 50.0%
! CGGTACTTGTTGCGAGGTTC+TGG + chr1_3:72815110-72815129 None:intergenic 55.0%
GTGGAGAGGAGCTTCTCACA+TGG - chr1_3:72816856-72816875 Msa0139240:intron 55.0%
!! GGCGAAGCTGCTTGCTATGA+AGG + chr1_3:72817007-72817026 None:intergenic 55.0%
TGGCACCGCAAGGAAGACAA+GGG - chr1_3:72817250-72817269 Msa0139240:intron 55.0%
! CGGTACTTGTTGCGAGGTTC+TGG + chr1_3:72815110-72815129 None:intergenic 55.0%
GTGGAGAGGAGCTTCTCACA+TGG - chr1_3:72816856-72816875 Msa0139240:intron 55.0%
!! GGCGAAGCTGCTTGCTATGA+AGG + chr1_3:72817007-72817026 None:intergenic 55.0%
TGGCACCGCAAGGAAGACAA+GGG - chr1_3:72817250-72817269 Msa0139240:intron 55.0%
CTCCTCTCCACAGAAGTCGC+CGG + chr1_3:72816847-72816866 None:intergenic 60.0%
!! GCTGCTTGCTATGAAGGCGC+CGG + chr1_3:72817001-72817020 None:intergenic 60.0%
ACTCGCAACACTGGCGCACA+TGG - chr1_3:72817042-72817061 Msa0139240:intron 60.0%
CTCGCAACACTGGCGCACAT+GGG - chr1_3:72817043-72817062 Msa0139240:intron 60.0%
GTGGCACCGCAAGGAAGACA+AGG - chr1_3:72817249-72817268 Msa0139240:intron 60.0%
CTCCTCTCCACAGAAGTCGC+CGG + chr1_3:72816847-72816866 None:intergenic 60.0%
!! GCTGCTTGCTATGAAGGCGC+CGG + chr1_3:72817001-72817020 None:intergenic 60.0%
ACTCGCAACACTGGCGCACA+TGG - chr1_3:72817042-72817061 Msa0139240:intron 60.0%
CTCGCAACACTGGCGCACAT+GGG - chr1_3:72817043-72817062 Msa0139240:intron 60.0%
GTGGCACCGCAAGGAAGACA+AGG - chr1_3:72817249-72817268 Msa0139240:intron 60.0%
AGCCGGCGACTTCTGTGGAG+AGG - chr1_3:72816842-72816861 Msa0139240:intron 65.0%
TGCGACGAAGTGGCACCGCA+AGG - chr1_3:72817240-72817259 Msa0139240:intron 65.0%
AGCCGGCGACTTCTGTGGAG+AGG - chr1_3:72816842-72816861 Msa0139240:intron 65.0%
TGCGACGAAGTGGCACCGCA+AGG - chr1_3:72817240-72817259 Msa0139240:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 72815099 72817510 72815099 ID=Msa0139240;Name=Msa0139240
chr1_3 mRNA 72815099 72817510 72815099 ID=Msa0139240-mRNA-1;Parent=Msa0139240;Name=Msa0139240-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.66|1|0.5|0.66|3|167|349
chr1_3 exon 72815099 72815967 72815099 ID=Msa0139240-mRNA-1:exon:25365;Parent=Msa0139240-mRNA-1
chr1_3 exon 72816168 72816404 72816168 ID=Msa0139240-mRNA-1:exon:25364;Parent=Msa0139240-mRNA-1
chr1_3 exon 72817400 72817510 72817400 ID=Msa0139240-mRNA-1:exon:25363;Parent=Msa0139240-mRNA-1
chr1_3 CDS 72817400 72817510 72817400 ID=Msa0139240-mRNA-1:cds;Parent=Msa0139240-mRNA-1
chr1_3 CDS 72816168 72816404 72816168 ID=Msa0139240-mRNA-1:cds;Parent=Msa0139240-mRNA-1
chr1_3 CDS 72815266 72815967 72815266 ID=Msa0139240-mRNA-1:cds;Parent=Msa0139240-mRNA-1
chr1_3 three_prime_UTR 72815099 72815265 72815099 ID=Msa0139240-mRNA-1:three_prime_utr;Parent=Msa0139240-mRNA-1
Gene Sequence

>Msa0139240

TCTCTTGGCCAGAACCTCGCAACAAGTACCGATTTTTGGGAAATCTGTTTTGCAATTTTCATTGCCATAGCTGGTTTGGTGTTATTTTCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACACAAACAAGATTGGAGGAGATGAGAGTAAAAAGGAGGGATGCAGAACAGTGGATGTCTCATCGATTGCTTCCTGACGACCTTAGAGAGCGAATCAGGCGATATGATCAGTACAAATGGCAAGAAACCAGAGGTGTAAATGAAGACAATTTAGTTCGTGATCTTCCCAAAGATTTACGAAGGGACATTAAGCGTCATCTTTGCTTGGATTTGTTGATGAGGGTGCCAATGTTTGAGAAAATGGACGAACAACTTTTGGACGCAATGTGTGACCGTCTTAAACCAGTGCTTTACACAGAACAAAGCTATGTTGTCCGAGAAGGAGATCCTGTTGATGAGATGCTCTTCATAATGCGAGGCAAGCTATTGACCATAACAACTAACGGTGGACGAACCGGCTTCTTCAATTCCGAGTACTTAAAAGCCGGCGACTTCTGTGGAGAGGAGCTTCTCACATGGGCCTTAGATCCTCGTACCTCATACAACCTTCCCATATCCACTAGGACAGTCAGAACAATCGTAGAAGTTGAAGCCTTTGCGCTAAAAGCCGACGATCTGAAGTTTGTGGCGTCTCAATTCCGGCGCCTTCATAGCAAGCAGCTTCGCCACACTTTCAGATTCTACTCGCAACACTGGCGCACATGGGCTGCATGTTTTATACAAGCTGCATGGAGGCGCTACAGCAAGAAGAAACTTGAAGAGTCGCTTGTTGAAGAGGAGAACAGGCTGAAAGATGCATTGGCAAAGACTGGTGGTAACACAACAAGTTTAGGTGCCACCATATATGCTTCTAGGTTTGCTGCCAATGCACTCAGATTGTTGCGACGAAGTGGCACCGCAAGGAAGACAAGGGCACTAGAGAGAATGCCTGCTATATTGCTTCAGAAGCCTGAAGAACCTAACTTTACTGATGATGAACAATAG
Protein sequence

>Msa0139240

SLGQNLATSTDFWEICFAIFIAIAGLVLFSFLIGNMQTYLQSTQTRLEEMRVKRRDAEQWMSHRLLPDDLRERIRRYDQYKWQETRGVNEDNLVRDLPKDLRRDIKRHLCLDLLMRVPMFEKMDEQLLDAMCDRLKPVLYTEQSYVVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLKAGDFCGEELLTWALDPRTSYNLPISTRTVRTIVEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQHWRTWAACFIQAAWRRYSKKKLEESLVEEENRLKDALAKTGGNTTSLGATIYASRFAANALRLLRRSGTARKTRALERMPAILLQKPEEPNFTDDEQ*