AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0211150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0211150 MtrunA17_Chr2g0310111 97.059 204 6 0 1 204 145 348 1.68e-146 411
Msa0211150 MtrunA17_Chr8g0356981 80.882 204 39 0 1 204 138 341 1.08e-113 327
Msa0211150 MtrunA17_Chr7g0253651 68.317 202 62 2 1 200 143 344 4.17e-98 288
Msa0211150 MtrunA17_Chr2g0331311 66.667 198 65 1 6 202 147 344 2.47e-96 284
Msa0211150 MtrunA17_Chr2g0304231 63.918 194 70 0 6 199 150 343 4.36e-88 263
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0211150 AT1G54320.1 78.431 204 44 0 1 204 146 349 5.71e-117 337
Msa0211150 AT1G79450.2 75.369 203 50 0 1 203 79 281 2.13e-113 325
Msa0211150 AT1G16360.2 73.892 203 53 0 1 203 146 348 7.67e-113 326
Msa0211150 AT1G79450.1 75.369 203 50 0 1 203 146 348 9.24e-113 326
Msa0211150 AT3G12740.1 75.490 204 50 0 1 204 147 350 9.44e-113 326
Msa0211150 AT1G16360.1 73.892 203 53 0 1 203 132 334 1.02e-112 325
Msa0211150 AT1G16360.4 71.958 189 53 0 1 189 132 320 9.93e-101 295
Msa0211150 AT5G46150.1 59.259 189 74 1 11 199 153 338 1.52e-77 236
Msa0211150 AT5G46150.2 59.259 189 74 1 11 199 153 338 1.52e-77 236
Msa0211150 AT5G46150.3 60.452 177 70 0 11 187 153 329 7.01e-76 231
Msa0211150 AT1G16360.3 66.304 92 31 0 1 92 132 223 1.82e-39 135
Msa0211150 AT1G16360.5 66.304 92 31 0 1 92 132 223 1.82e-39 135
Msa0211150 AT5G46150.4 61.728 81 31 0 11 91 153 233 5.28e-33 119

Find 58 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCCTTGTAATATTGAAAA+TGG 0.171467 2_1:+51996762 None:intergenic
AGAGAGGGAGTATTTGTTTC+AGG 0.214632 2_1:+51996562 None:intergenic
AGTGATAGGGAGCACAAATT+TGG 0.303708 2_1:-51998845 Msa0211150:CDS
ACATCTACTTAACTACTTAC+TGG 0.307573 2_1:-51996707 Msa0211150:three_prime_UTR
CTGTTATTTGCAGTATCTTC+AGG 0.335452 2_1:+51998977 None:intergenic
TTCCAGAATGGTTCTATAAT+AGG 0.338624 2_1:-51998800 Msa0211150:CDS
GCATCTCCTGGAAGAGTGAT+AGG 0.345405 2_1:-51998859 Msa0211150:CDS
GTGCTCCCTATCACTCTTCC+AGG 0.372048 2_1:+51998853 None:intergenic
CACCTATTATAGAACCATTC+TGG 0.379889 2_1:+51998798 None:intergenic
CATCATATTTGTCATGGAAT+AGG 0.380885 2_1:-51996837 Msa0211150:CDS
CTGAAGATACTGCAAATAAC+AGG 0.383558 2_1:-51998976 Msa0211150:CDS
CCATATAACTTCCTAAAAGT+TGG 0.396101 2_1:+51998341 None:intergenic
TACCTTGTGGTCTCATAGCT+TGG 0.407481 2_1:-51998946 Msa0211150:CDS
GGCATTGCTTATCTCACTGT+TGG 0.409859 2_1:-51998179 Msa0211150:CDS
CGTCAAATTTGTATTGTTGA+CGG 0.430499 2_1:+51998895 None:intergenic
TATAACACATACAGTTTCAA+TGG 0.439187 2_1:-51998260 Msa0211150:CDS
TTCATTCTTTGTAGGCAACT+TGG 0.442644 2_1:-51996865 Msa0211150:intron
CTTGGTTATTCTACAGTGGC+AGG 0.447008 2_1:-51996742 Msa0211150:three_prime_UTR
ATTGCTTATCTCACTGTTGG+AGG 0.447358 2_1:-51998176 Msa0211150:CDS
CTACTACTAGTTGGCTTGGT+GGG 0.476828 2_1:-51998217 Msa0211150:CDS
CGTCAACAATACAAATTTGA+CGG 0.477985 2_1:-51998894 Msa0211150:CDS
AGCAGGAGGATCTTATTGTC+TGG 0.479332 2_1:-51998382 Msa0211150:CDS
TATGGAACAGTTGAATGAGC+AGG 0.483440 2_1:-51998399 Msa0211150:intron
AGCCTTGTAATATTGAAAAT+GGG 0.483657 2_1:+51996763 None:intergenic
CTTACTGAGTTCTCTCCCTT+AGG 0.490717 2_1:+51999010 None:intergenic
CTATTCCATGACAAATATGA+TGG 0.491865 2_1:+51996838 None:intergenic
TAACTTCCTAAAAGTTGGTA+AGG 0.500049 2_1:+51998346 None:intergenic
TGAACAAGAAAGGCATCTCC+TGG 0.500765 2_1:-51998871 Msa0211150:CDS
GAGATCCATCATATTTGTCA+TGG 0.508248 2_1:-51996843 Msa0211150:CDS
GGTGGGAAGAATGATTTCCT+TGG 0.509013 2_1:-51998200 Msa0211150:CDS
ATAGAGGTGGATTTGAATCA+AGG 0.521775 2_1:-51998314 Msa0211150:CDS
TTTCAAGTGTTGCATCTATG+AGG 0.527603 2_1:+51998288 None:intergenic
GAAGTTATATGGAAAGATAG+AGG 0.534995 2_1:-51998330 Msa0211150:CDS
AATTTGACGGTGAACAAGAA+AGG 0.544214 2_1:-51998881 Msa0211150:CDS
GCATCAGAATTTAAATACAC+TGG 0.557233 2_1:-51996607 Msa0211150:three_prime_UTR
TGAGCAATTGAGGAGTCCTA+AGG 0.562902 2_1:-51999026 None:intergenic
CTGTCTACTACTAGTTGGCT+TGG 0.565993 2_1:-51998221 Msa0211150:CDS
GAGCAATTGAGGAGTCCTAA+GGG 0.567682 2_1:-51999025 None:intergenic
CCTAAAAGTTGGTAAGGCAG+CGG 0.576352 2_1:+51998352 None:intergenic
TGAGTATACACATGGAGAGA+GGG 0.583434 2_1:+51996547 None:intergenic
TCTACTACTAGTTGGCTTGG+TGG 0.589289 2_1:-51998218 Msa0211150:CDS
CATCTCCTGGAAGAGTGATA+GGG 0.595404 2_1:-51998858 Msa0211150:CDS
ACTGGTATGTTATAATCTCG+TGG 0.599655 2_1:-51996589 Msa0211150:three_prime_UTR
TCGTACTGTCTACTACTAGT+TGG 0.604749 2_1:-51998226 Msa0211150:CDS
ACATCTTAATGAATCGATAC+CGG 0.606029 2_1:-51998771 Msa0211150:intron
TTGAGTATACACATGGAGAG+AGG 0.608874 2_1:+51996546 None:intergenic
CAGTGAGATAAGCAATGCCA+AGG 0.614950 2_1:+51998183 None:intergenic
CTCCAAGCTATGAGACCACA+AGG 0.620952 2_1:+51998944 None:intergenic
CAGAATGGTTCTATAATAGG+TGG 0.623008 2_1:-51998797 Msa0211150:CDS
AACAGGTCAATTGTACCTTG+TGG 0.623062 2_1:-51998959 Msa0211150:CDS
TGGCTTGACAAAATATACAA+TGG 0.626612 2_1:+51998124 None:intergenic
GTTATATGGAAAGATAGAGG+TGG 0.643018 2_1:-51998327 Msa0211150:CDS
GGAACAGTTGAATGAGCAGG+AGG 0.647507 2_1:-51998396 Msa0211150:intron
CATGGAATAGGAACCAAGGA+GGG 0.649024 2_1:-51996825 Msa0211150:CDS
GAGATGATTGAGTATACACA+TGG 0.664297 2_1:+51996539 None:intergenic
TTGTCATGGAATAGGAACCA+AGG 0.667669 2_1:-51996829 Msa0211150:CDS
AAGGCTTGGTTATTCTACAG+TGG 0.674305 2_1:-51996746 Msa0211150:three_prime_UTR
TCATGGAATAGGAACCAAGG+AGG 0.714609 2_1:-51996826 Msa0211150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTATTTTTTAAAAT+AGG - chr2_1:51998415-51998434 Msa0211150:intron 0.0%
!! AAAAAAAAAAAAAAAAACTG+TGG - chr2_1:51997801-51997820 Msa0211150:intron 10.0%
!!! ATTGTTGTTTTTTCTTTTTA+GGG + chr2_1:51998889-51998908 None:intergenic 15.0%
!!! AATTGTTGTTTTTTCTTTTT+AGG + chr2_1:51998890-51998909 None:intergenic 15.0%
!!! TTGAAAGTTTAAGATGAAAA+AGG + chr2_1:51997073-51997092 None:intergenic 20.0%
!! ATGGTGAACAAAATAAATAT+TGG + chr2_1:51997102-51997121 None:intergenic 20.0%
!! TGTTCCATAAAATATTCAAA+AGG + chr2_1:51997130-51997149 None:intergenic 20.0%
!!! GGATTGAAATTTTAAATGTT+AGG + chr2_1:51997595-51997614 None:intergenic 20.0%
!! TATAATAAATGCCAATTTCA+GGG + chr2_1:51997633-51997652 None:intergenic 20.0%
!! ATATAATAAATGCCAATTTC+AGG + chr2_1:51997634-51997653 None:intergenic 20.0%
!!! ATTTTTAAAAATGAAGAGCA+CGG - chr2_1:51997907-51997926 Msa0211150:intron 20.0%
!! TGTCAGTGTTTCATATTTTA+TGG - chr2_1:51996987-51997006 Msa0211150:intron 25.0%
!! GTCAGTGTTTCATATTTTAT+GGG - chr2_1:51996988-51997007 Msa0211150:intron 25.0%
!! TATAGAAATGACTTTTCACA+TGG - chr2_1:51997029-51997048 Msa0211150:intron 25.0%
!!! TTTAAGATGAAAAAGGTGTT+TGG + chr2_1:51997066-51997085 None:intergenic 25.0%
!! CTCACCTTTTGAATATTTTA+TGG - chr2_1:51997123-51997142 Msa0211150:intron 25.0%
! TATAACACATACAGTTTCAA+TGG - chr2_1:51997280-51997299 Msa0211150:intron 25.0%
!! ATTATGCTTCTTTTTATCGT+TGG - chr2_1:51997387-51997406 Msa0211150:intron 25.0%
! CACATGGAATATTGTATATT+AGG - chr2_1:51997569-51997588 Msa0211150:intron 25.0%
!!! TTTTATTTTATGTAGCCGAT+TGG - chr2_1:51997690-51997709 Msa0211150:intron 25.0%
!!! TTTTTAAAAATGAAGAGCAC+GGG - chr2_1:51997908-51997927 Msa0211150:intron 25.0%
!! AAAAGTCGAAAAAGTATAGT+TGG - chr2_1:51998023-51998042 Msa0211150:intron 25.0%
! TGTTGTATTAGTTGTTATGT+TGG - chr2_1:51998445-51998464 Msa0211150:intron 25.0%
! GTTGTATTAGTTGTTATGTT+GGG - chr2_1:51998446-51998465 Msa0211150:intron 25.0%
! TTGTATTAGTTGTTATGTTG+GGG - chr2_1:51998447-51998466 Msa0211150:intron 25.0%
! ATGAAAAATAGGTTAGGATT+AGG + chr2_1:51998660-51998679 None:intergenic 25.0%
! CAAAGAATGAAAAATAGGTT+AGG + chr2_1:51998666-51998685 None:intergenic 25.0%
!!! ACCTATTTTTCATTCTTTGT+AGG - chr2_1:51998667-51998686 Msa0211150:intron 25.0%
!! TTCCCATTTTCAATATTACA+AGG - chr2_1:51998775-51998794 Msa0211150:CDS 25.0%
!! AGCCTTGTAATATTGAAAAT+GGG + chr2_1:51998780-51998799 None:intergenic 25.0%
!! AAGCCTTGTAATATTGAAAA+TGG + chr2_1:51998781-51998800 None:intergenic 25.0%
!! ATTTTCAATATTACAAGGCT+TGG - chr2_1:51998780-51998799 Msa0211150:CDS 25.0%
CGTCAAATTTGTATTGTTGA+CGG + chr2_1:51996648-51996667 None:intergenic 30.0%
CGTCAACAATACAAATTTGA+CGG - chr2_1:51996646-51996665 Msa0211150:three_prime_UTR 30.0%
! TTCCAGAATGGTTCTATAAT+AGG - chr2_1:51996740-51996759 Msa0211150:three_prime_UTR 30.0%
ACATCTTAATGAATCGATAC+CGG - chr2_1:51996769-51996788 Msa0211150:three_prime_UTR 30.0%
TATACTTATCTCTCTTCACA+AGG - chr2_1:51996842-51996861 Msa0211150:CDS 30.0%
AAAATATGAAACACTGACAC+TGG + chr2_1:51996986-51997005 None:intergenic 30.0%
AAATATTCAAAAGGTGAGCA+TGG + chr2_1:51997121-51997140 None:intergenic 30.0%
!! TAACTTCCTAAAAGTTGGTA+AGG + chr2_1:51997197-51997216 None:intergenic 30.0%
CCATATAACTTCCTAAAAGT+TGG + chr2_1:51997202-51997221 None:intergenic 30.0%
!! CCAACTTTTAGGAAGTTATA+TGG - chr2_1:51997199-51997218 Msa0211150:intron 30.0%
GAAGTTATATGGAAAGATAG+AGG - chr2_1:51997210-51997229 Msa0211150:intron 30.0%
TGGCTTGACAAAATATACAA+TGG + chr2_1:51997419-51997438 None:intergenic 30.0%
! TTGTATATTTTGTCAAGCCA+AGG - chr2_1:51997419-51997438 Msa0211150:intron 30.0%
TTGTTGCATAAATTAGCACA+TGG - chr2_1:51997553-51997572 Msa0211150:intron 30.0%
TAATTTCAGAATCAGCCAAT+CGG + chr2_1:51997708-51997727 None:intergenic 30.0%
TAAAGGGAGCTTATAAAGAA+AGG + chr2_1:51997742-51997761 None:intergenic 30.0%
TTTGCTCATCATTCTATTGT+GGG + chr2_1:51998128-51998147 None:intergenic 30.0%
! TTTTGCTCATCATTCTATTG+TGG + chr2_1:51998129-51998148 None:intergenic 30.0%
! GGATATATATTTTCCTTCAC+CGG - chr2_1:51998468-51998487 Msa0211150:intron 30.0%
! GATATATATTTTCCTTCACC+GGG - chr2_1:51998469-51998488 Msa0211150:intron 30.0%
! ATATATATTTTCCTTCACCG+GGG - chr2_1:51998470-51998489 Msa0211150:intron 30.0%
AAAGGAGTTGAAAGAGTTAA+AGG + chr2_1:51998508-51998527 None:intergenic 30.0%
!! CAAACTGTTCTGAGATTTAA+AGG + chr2_1:51998526-51998545 None:intergenic 30.0%
GCCTACAAAGAATGAAAAAT+AGG + chr2_1:51998671-51998690 None:intergenic 30.0%
CTATTCCATGACAAATATGA+TGG + chr2_1:51998705-51998724 None:intergenic 30.0%
CATCATATTTGTCATGGAAT+AGG - chr2_1:51998703-51998722 Msa0211150:intron 30.0%
ACATCTACTTAACTACTTAC+TGG - chr2_1:51998833-51998852 Msa0211150:CDS 30.0%
! TGGTAACACTTGTGTATTTT+AGG - chr2_1:51998853-51998872 Msa0211150:CDS 30.0%
GCATCAGAATTTAAATACAC+TGG - chr2_1:51998933-51998952 Msa0211150:CDS 30.0%
! CTGTTATTTGCAGTATCTTC+AGG + chr2_1:51996566-51996585 None:intergenic 35.0%
CTGAAGATACTGCAAATAAC+AGG - chr2_1:51996564-51996583 Msa0211150:three_prime_UTR 35.0%
AATTTGACGGTGAACAAGAA+AGG - chr2_1:51996659-51996678 Msa0211150:three_prime_UTR 35.0%
TTTCCCAAAAACTTCCAGAA+TGG - chr2_1:51996728-51996747 Msa0211150:three_prime_UTR 35.0%
!! GAACCATTCTGGAAGTTTTT+GGG + chr2_1:51996734-51996753 None:intergenic 35.0%
!! AGAACCATTCTGGAAGTTTT+TGG + chr2_1:51996735-51996754 None:intergenic 35.0%
CACCTATTATAGAACCATTC+TGG + chr2_1:51996745-51996764 None:intergenic 35.0%
! CAGAATGGTTCTATAATAGG+TGG - chr2_1:51996743-51996762 Msa0211150:three_prime_UTR 35.0%
! TTGAAGTGTCAGTGTTATAG+AGG + chr2_1:51996887-51996906 None:intergenic 35.0%
ACACTGACACTTCAAAATGA+AGG - chr2_1:51996892-51996911 Msa0211150:intron 35.0%
GTTATATGGAAAGATAGAGG+TGG - chr2_1:51997213-51997232 Msa0211150:intron 35.0%
! ATAGAGGTGGATTTGAATCA+AGG - chr2_1:51997226-51997245 Msa0211150:intron 35.0%
! TTTCAAGTGTTGCATCTATG+AGG + chr2_1:51997255-51997274 None:intergenic 35.0%
! TGAATTTGCGCTGTTTCAAA+AGG + chr2_1:51997487-51997506 None:intergenic 35.0%
TGCCAATTTCAGGGTTAAAA+CGG + chr2_1:51997624-51997643 None:intergenic 35.0%
AAATTACCGTATTCTCGTAC+CGG + chr2_1:51997891-51997910 None:intergenic 35.0%
TCTATTGTGGGTGAAAATTG+TGG + chr2_1:51998116-51998135 None:intergenic 35.0%
! AAAATATGAAGTACCCGTAC+CGG + chr2_1:51998160-51998179 None:intergenic 35.0%
AGTTGAAAGAGTTAAAGGAC+CGG + chr2_1:51998503-51998522 None:intergenic 35.0%
CGTTAGCTAAAAACGATTTC+TGG - chr2_1:51998569-51998588 Msa0211150:intron 35.0%
TTCAAAACAACCACTTCAAG+TGG + chr2_1:51998622-51998641 None:intergenic 35.0%
TTCATTCTTTGTAGGCAACT+TGG - chr2_1:51998675-51998694 Msa0211150:intron 35.0%
GAGATCCATCATATTTGTCA+TGG - chr2_1:51998697-51998716 Msa0211150:intron 35.0%
ACTGGTATGTTATAATCTCG+TGG - chr2_1:51998951-51998970 Msa0211150:CDS 35.0%
GAGATGATTGAGTATACACA+TGG + chr2_1:51999004-51999023 None:intergenic 35.0%
AACAGGTCAATTGTACCTTG+TGG - chr2_1:51996581-51996600 Msa0211150:three_prime_UTR 40.0%
! AGTGATAGGGAGCACAAATT+TGG - chr2_1:51996695-51996714 Msa0211150:three_prime_UTR 40.0%
GACATCATGAAGCTACTTAC+CGG + chr2_1:51996791-51996810 None:intergenic 40.0%
TATGGAACAGTTGAATGAGC+AGG - chr2_1:51997141-51997160 Msa0211150:intron 40.0%
TCGTACTGTCTACTACTAGT+TGG - chr2_1:51997314-51997333 Msa0211150:intron 40.0%
ATTGCTTATCTCACTGTTGG+AGG - chr2_1:51997364-51997383 Msa0211150:intron 40.0%
!! ACCCGTTTTAACCCTGAAAT+TGG - chr2_1:51997619-51997638 Msa0211150:intron 40.0%
GCCAATTTCAGGGTTAAAAC+GGG + chr2_1:51997623-51997642 None:intergenic 40.0%
AGGTCTATGTTGCATAGGTA+TGG - chr2_1:51997839-51997858 Msa0211150:intron 40.0%
GGTCTATGTTGCATAGGTAT+GGG - chr2_1:51997840-51997859 Msa0211150:intron 40.0%
ATGTTGCATAGGTATGGGTA+CGG - chr2_1:51997845-51997864 Msa0211150:intron 40.0%
GATGAGCAAAAATGCATACC+CGG - chr2_1:51998138-51998157 Msa0211150:CDS 40.0%
! AAATATGAAGTACCCGTACC+GGG + chr2_1:51998159-51998178 None:intergenic 40.0%
GTTGAAAGAGTTAAAGGACC+GGG + chr2_1:51998502-51998521 None:intergenic 40.0%
TTGTCATGGAATAGGAACCA+AGG - chr2_1:51998711-51998730 Msa0211150:intron 40.0%
!! TTTTTGTTTACTGCCCTCCT+TGG + chr2_1:51998731-51998750 None:intergenic 40.0%
! AAGGCTTGGTTATTCTACAG+TGG - chr2_1:51998794-51998813 Msa0211150:CDS 40.0%
!! AGAGAGGGAGTATTTGTTTC+AGG + chr2_1:51998981-51999000 None:intergenic 40.0%
TGAGTATACACATGGAGAGA+GGG + chr2_1:51998996-51999015 None:intergenic 40.0%
TTGAGTATACACATGGAGAG+AGG + chr2_1:51998997-51999016 None:intergenic 40.0%
CTTACTGAGTTCTCTCCCTT+AGG + chr2_1:51996533-51996552 None:intergenic 45.0%
TACCTTGTGGTCTCATAGCT+TGG - chr2_1:51996594-51996613 Msa0211150:three_prime_UTR 45.0%
!! TGAACAAGAAAGGCATCTCC+TGG - chr2_1:51996669-51996688 Msa0211150:three_prime_UTR 45.0%
CATCTCCTGGAAGAGTGATA+GGG - chr2_1:51996682-51996701 Msa0211150:three_prime_UTR 45.0%
AGCAGGAGGATCTTATTGTC+TGG - chr2_1:51997158-51997177 Msa0211150:intron 45.0%
!! CCTAAAAGTTGGTAAGGCAG+CGG + chr2_1:51997191-51997210 None:intergenic 45.0%
CTGTCTACTACTAGTTGGCT+TGG - chr2_1:51997319-51997338 Msa0211150:intron 45.0%
!! TCTACTACTAGTTGGCTTGG+TGG - chr2_1:51997322-51997341 Msa0211150:intron 45.0%
!! CTACTACTAGTTGGCTTGGT+GGG - chr2_1:51997323-51997342 Msa0211150:intron 45.0%
GGTGGGAAGAATGATTTCCT+TGG - chr2_1:51997340-51997359 Msa0211150:intron 45.0%
CAGTGAGATAAGCAATGCCA+AGG + chr2_1:51997360-51997379 None:intergenic 45.0%
GGCATTGCTTATCTCACTGT+TGG - chr2_1:51997361-51997380 Msa0211150:intron 45.0%
GAGAATGCAAGTACGTACCT+TGG + chr2_1:51997439-51997458 None:intergenic 45.0%
TCAGGGTTAAAACGGGTGAA+TGG + chr2_1:51997616-51997635 None:intergenic 45.0%
CAGACTGCAGACTCACTAAA+GGG + chr2_1:51997758-51997777 None:intergenic 45.0%
CTGTGAGGTCTATGTTGCAT+AGG - chr2_1:51997834-51997853 Msa0211150:intron 45.0%
TACGGTACCCAGTACGATAT+GGG - chr2_1:51997863-51997882 Msa0211150:intron 45.0%
GCAAAAATGCATACCCGGTA+CGG - chr2_1:51998143-51998162 Msa0211150:CDS 45.0%
CAAAAATGCATACCCGGTAC+GGG - chr2_1:51998144-51998163 Msa0211150:CDS 45.0%
!! AACCTCACACTCTGAAGCAT+GGG + chr2_1:51998191-51998210 None:intergenic 45.0%
CAGCCGTTGTATGAATCCAA+TGG - chr2_1:51998288-51998307 Msa0211150:CDS 45.0%
CGGCCATTGGATTCATACAA+CGG + chr2_1:51998294-51998313 None:intergenic 45.0%
TCTTCAACAGCCACTTGAAG+TGG - chr2_1:51998609-51998628 Msa0211150:intron 45.0%
TCATGGAATAGGAACCAAGG+AGG - chr2_1:51998714-51998733 Msa0211150:intron 45.0%
CATGGAATAGGAACCAAGGA+GGG - chr2_1:51998715-51998734 Msa0211150:intron 45.0%
CTTGGTTATTCTACAGTGGC+AGG - chr2_1:51998798-51998817 Msa0211150:CDS 45.0%
!! ATAAAATTTAAATTATACAA+TGG + chr2_1:51998387-51998406 None:intergenic 5.0%
CTCCAAGCTATGAGACCACA+AGG + chr2_1:51996599-51996618 None:intergenic 50.0%
GCATCTCCTGGAAGAGTGAT+AGG - chr2_1:51996681-51996700 Msa0211150:three_prime_UTR 50.0%
GGAACAGTTGAATGAGCAGG+AGG - chr2_1:51997144-51997163 Msa0211150:intron 50.0%
! CCGCTGCCTTACCAACTTTT+AGG - chr2_1:51997188-51997207 Msa0211150:intron 50.0%
GCAGACTGCAGACTCACTAA+AGG + chr2_1:51997759-51997778 None:intergenic 50.0%
TGTGGCTTGAAGTTGCTGTG+AGG - chr2_1:51997819-51997838 Msa0211150:intron 50.0%
GTACGGTACCCAGTACGATA+TGG - chr2_1:51997862-51997881 Msa0211150:intron 50.0%
ACCCAGTACGATATGGGTAC+CGG - chr2_1:51997869-51997888 Msa0211150:intron 50.0%
ACCGGTACCCATATCGTACT+GGG + chr2_1:51997873-51997892 None:intergenic 50.0%
TACCGGTACCCATATCGTAC+TGG + chr2_1:51997874-51997893 None:intergenic 50.0%
!! TGGGTACCGGTACGAGAATA+CGG - chr2_1:51997882-51997901 Msa0211150:intron 50.0%
TACCCATGCTTCAGAGTGTG+AGG - chr2_1:51998186-51998205 Msa0211150:CDS 50.0%
!! GAACCTCACACTCTGAAGCA+TGG + chr2_1:51998192-51998211 None:intergenic 50.0%
!! GGCTGAGAGCATTGATCTCT+CGG + chr2_1:51998273-51998292 None:intergenic 50.0%
ATTGGCAGTCAAGGCAAGAG+AGG - chr2_1:51998326-51998345 Msa0211150:CDS 50.0%
GTGCTCCCTATCACTCTTCC+AGG + chr2_1:51996690-51996709 None:intergenic 55.0%
CTGCATCTGTCTGCTGATGC+AGG + chr2_1:51998250-51998269 None:intergenic 55.0%
TGAATCCAATGGCCGACCTC+TGG - chr2_1:51998299-51998318 Msa0211150:CDS 55.0%
TTGACTGCCAATGCAGCCAG+AGG + chr2_1:51998318-51998337 None:intergenic 55.0%
! TCTGGCTGCATTGGCAGTCA+AGG - chr2_1:51998317-51998336 Msa0211150:CDS 55.0%
AAAGGACCGGGTTCAAACCC+CGG + chr2_1:51998490-51998509 None:intergenic 55.0%
CTGCCAATGCAGCCAGAGGT+CGG + chr2_1:51998314-51998333 None:intergenic 60.0%
CCTTCACCGGGGTTTGAACC+CGG - chr2_1:51998481-51998500 Msa0211150:intron 60.0%
TGCAGCCAGAGGTCGGCCAT+TGG + chr2_1:51998307-51998326 None:intergenic 65.0%
TGGCCGACCTCTGGCTGCAT+TGG - chr2_1:51998308-51998327 Msa0211150:CDS 65.0%
CCGGGTTCAAACCCCGGTGA+AGG + chr2_1:51998484-51998503 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 51996521 51999041 51996521 ID=Msa0211150;Name=Msa0211150
chr2_1 mRNA 51996521 51999041 51996521 ID=Msa0211150-mRNA-1;Parent=Msa0211150;Name=Msa0211150-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.5|0.33|1|1|0.66|3|298|204
chr2_1 exon 51996521 51996873 51996521 ID=Msa0211150-mRNA-1:exon:14466;Parent=Msa0211150-mRNA-1
chr2_1 exon 51998122 51998411 51998122 ID=Msa0211150-mRNA-1:exon:14465;Parent=Msa0211150-mRNA-1
chr2_1 exon 51998772 51999041 51998772 ID=Msa0211150-mRNA-1:exon:14464;Parent=Msa0211150-mRNA-1
chr2_1 CDS 51998772 51999041 51998772 ID=Msa0211150-mRNA-1:cds;Parent=Msa0211150-mRNA-1
chr2_1 CDS 51998122 51998411 51998122 ID=Msa0211150-mRNA-1:cds;Parent=Msa0211150-mRNA-1
chr2_1 CDS 51996819 51996873 51996819 ID=Msa0211150-mRNA-1:cds;Parent=Msa0211150-mRNA-1
chr2_1 three_prime_UTR 51996521 51996818 51996521 ID=Msa0211150-mRNA-1:three_prime_utr;Parent=Msa0211150-mRNA-1
Gene Sequence

>Msa0211150

TTGAGGAGTCCTAAGGGAGAGAACTCAGTAAGTGCTTGTAAGCCTGAAGATACTGCAAATAACAGGTCAATTGTACCTTGTGGTCTCATAGCTTGGAGTTTATTCAATGACACATACAGCTTCTCCGTCAACAATACAAATTTGACGGTGAACAAGAAAGGCATCTCCTGGAAGAGTGATAGGGAGCACAAATTTGGAAAAGATGTTTTTCCCAAAAACTTCCAGAATGGTTCTATAATAGGTGGCGCACATCTTAATGAATCGATACCGTTGAATGAGCAGGAGGATCTTATTGTCTGGATGAGAACCGCTGCCTTACCAACTTTTAGGAAGTTATATGGAAAGATAGAGGTGGATTTGAATCAAGGTGACCTCATAGATGCAACACTTGAAAATAACTATAACACATACAGTTTCAATGGCAAGAAAAAGCTCGTACTGTCTACTACTAGTTGGCTTGGTGGGAAGAATGATTTCCTTGGCATTGCTTATCTCACTGTTGGAGGATTATGCTTCTTTTTATCGTTGGCTTTTACCATTGTATATTTTGTCAAGCCAAGGCAACTTGGAGATCCATCATATTTGTCATGGAATAGGAACCAAGGAGGGCAGTAA

Protein sequence

>Msa0211150

LRSPKGENSVSACKPEDTANNRSIVPCGLIAWSLFNDTYSFSVNNTNLTVNKKGISWKSDREHKFGKDVFPKNFQNGSIIGGAHLNESIPLNEQEDLIVWMRTAALPTFRKLYGKIEVDLNQGDLIDATLENNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLSLAFTIVYFVKPRQLGDPSYLSWNRNQGGQ*