AlfalfaGEDB | Msa0139370

M. sativa cultivar zhongmu-4 / Msa0139370

KEGG: K13464
GO: GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141
PFAM: PF06200.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0139370	XP_003609915.1	95.531	179	7	1	1	179	1	178	4.75e-119	344

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0139370	sp\|Q9C5K8\|TIF3B_ARATH	41.085	129	55	6	45	164	57	173	2.72e-17	78.6

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0139370	G7JR45	95.531	179	7	1	1	179	1	178	2.27e-119	344

TFs/TRs:

Gene ID	Type	Classification
Msa0139370	TF	Tify

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0139370	Msa1209120	0.935245	1.148294e-96	-8.615850e-47
Msa0139370	Msa1267010	0.999633	0.000000e+00	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0139370	MtrunA17_Chr4g0069721	95.531	179	7	1	1	179	1	178	4.36e-123	344
Msa0139370	MtrunA17_Chr2g0302041	54.545	154	52	4	25	169	38	182	6.38e-46	149
Msa0139370	MtrunA17_Chr5g0399851	35.338	133	68	3	41	169	17	135	4.37e-17	73.9
Msa0139370	MtrunA17_Chr5g0399861	30.081	123	70	2	41	163	40	146	3.69e-13	64.3
Msa0139370	MtrunA17_Chr5g0399881	29.508	122	68	3	41	161	40	144	3.30e-12	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0139370	AT5G20900.1	41.085	129	55	6	45	164	57	173	2.77e-18	78.6
Msa0139370	AT3G43440.1	34.615	130	63	4	44	173	130	237	1.29e-15	72.4
Msa0139370	AT3G43440.2	32.576	132	67	4	42	173	42	151	4.87e-15	68.9
Msa0139370	AT1G19180.2	33.929	112	65	2	43	154	58	160	6.37e-11	58.9

Find 70 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCCTCAAGTGGCATCATTAC+TGG	0.158225	1_3:+73029016	None:intergenic
TTCAATAATCATTATTAATT+AGG	0.206912	1_3:+73028867	None:intergenic
CAATTGTTTCCTTTGTATTT+TGG	0.215496	1_3:-73028727	Msa0139370:three_prime_UTR
CTCTCTCATTGGTTGTGTTC+TGG	0.246248	1_3:+73031492	None:intergenic
CACATTAATAACAACTTAAA+AGG	0.259091	1_3:+73028779	None:intergenic
GTGGTAAATACGAAGTTTCT+TGG	0.317024	1_3:+73028935	None:intergenic
AAACAAGCAAATGGTTTGTA+TGG	0.336684	1_3:+73031411	None:intergenic
CTGAGAAGAGTTCCATTTGC+AGG	0.345657	1_3:-73029620	Msa0139370:CDS
TTCTTGAGAAGAGGAGAATC+AGG	0.349802	1_3:-73029217	Msa0139370:intron
GCAAATGGTTTGTATGGTTA+AGG	0.359684	1_3:+73031417	None:intergenic
AGTGACTGTCTGCGTGCTAA+TGG	0.374634	1_3:+73029248	None:intergenic
CTAAGCATAACAGTGGATAT+TGG	0.387690	1_3:+73028817	None:intergenic
TTTGATGATGAAGAGGTATA+AGG	0.389455	1_3:+73029070	None:intergenic
TGGTTAATTACTATGTACTA+TGG	0.390081	1_3:-73028703	Msa0139370:three_prime_UTR
TTCAGGCCATTGTCAACATC+TGG	0.403016	1_3:-73029971	Msa0139370:intron
TGTACTTGCAACTCTCTCAT+TGG	0.407683	1_3:+73031481	None:intergenic
AGCATTTCTCTGCTGCTAAC+TGG	0.409603	1_3:-73031285	Msa0139370:intron
CTTCTTCATTTCAGAAGACT+TGG	0.412093	1_3:+73029746	None:intergenic
TGGAGAAGAAGGGGTGGTAC+TGG	0.425231	1_3:+73029695	None:intergenic
AATTAAATTAAACAAGCAAA+TGG	0.445337	1_3:+73031402	None:intergenic
CCTCAAGTGGCATCATTACT+GGG	0.449490	1_3:+73029017	None:intergenic
GAGTTTCCTTGTGGAGAAGA+AGG	0.454205	1_3:+73029684	None:intergenic
CAAAATACAAAGGAAACAAT+TGG	0.463324	1_3:+73028728	None:intergenic
GACATGAATGCACATGCTAC+TGG	0.465462	1_3:+73028961	None:intergenic
TGATGGAATTCCTGCAGAAA+AGG	0.473301	1_3:-73029882	Msa0139370:intron
AGCACCTTGCATCCTGCAAA+TGG	0.473425	1_3:+73029608	None:intergenic
TTGAGGGCAAATAGTACTCT+TGG	0.475532	1_3:-73029000	Msa0139370:exon
TAAATACGAAGTTTCTTGGT+TGG	0.477610	1_3:+73028939	None:intergenic
ATGGAACTCTTCTCAGCAGC+AGG	0.483824	1_3:+73029627	None:intergenic
TCTCATTGGTTGTGTTCTGG+TGG	0.486999	1_3:+73031495	None:intergenic
CTCATTGGTTGTGTTCTGGT+GGG	0.492540	1_3:+73031496	None:intergenic
CCAGTAATGATGCCACTTGA+GGG	0.495749	1_3:-73029016	Msa0139370:CDS
ACTGGAAAAGAGTGAATTGA+AGG	0.506999	1_3:+73029713	None:intergenic
ATGGCAAACTGAGTTGTACC+AGG	0.519158	1_3:+73029932	None:intergenic
TTCAAAGGTTTCTTGAGAAG+AGG	0.521134	1_3:-73029226	Msa0139370:CDS
AGTTTCCTTGTGGAGAAGAA+GGG	0.523527	1_3:+73029685	None:intergenic
TGTCTCAGTTGCAGAGGAGA+GGG	0.525526	1_3:-73031520	Msa0139370:five_prime_UTR
CATTTCAGAAGACTTGGCAT+TGG	0.534645	1_3:+73029752	None:intergenic
CACGCAGACAGTCACTTCAA+AGG	0.541667	1_3:-73029241	Msa0139370:CDS
CCCAGTAATGATGCCACTTG+AGG	0.545434	1_3:-73029017	Msa0139370:CDS
GAGTACTATTTGCCCTCAAG+TGG	0.556021	1_3:+73029004	None:intergenic
CAGCAGGAAAACCAACTGAT+GGG	0.556381	1_3:+73029643	None:intergenic
AGTTCCATTTGCAGGATGCA+AGG	0.556537	1_3:-73029612	Msa0139370:intron
GCAGCAGGAAAACCAACTGA+TGG	0.557635	1_3:+73029642	None:intergenic
AATAGTACTCTTGGTTGAAG+TGG	0.558121	1_3:-73028991	Msa0139370:exon
GGTGCATGAGATAATGATGA+TGG	0.567231	1_3:-73029781	Msa0139370:CDS
GGAAGCATGTGTGTATATGA+TGG	0.578130	1_3:-73029899	Msa0139370:CDS
GGACTAAATGCAATGACCCC+TGG	0.578930	1_3:-73029950	Msa0139370:CDS
CATGCTTCCATTGTAGAGGA+TGG	0.585189	1_3:+73029913	None:intergenic
GATACTATTAGAAGTAGTCA+TGG	0.588033	1_3:+73031351	None:intergenic
TCTTCTGAAATGAAGAAGAG+TGG	0.591559	1_3:-73029741	Msa0139370:CDS
ATTAGGCATATAACATGGTG+TGG	0.595601	1_3:+73028884	None:intergenic
CAGTTTGCCATCCTCTACAA+TGG	0.597338	1_3:-73029920	Msa0139370:CDS
CACACATGCTTCCATTGTAG+AGG	0.599209	1_3:+73029909	None:intergenic
ATGTCTCAGTTGCAGAGGAG+AGG	0.599523	1_3:-73031521	Msa0139370:five_prime_UTR
GTTTCCTTGTGGAGAAGAAG+GGG	0.603228	1_3:+73029686	None:intergenic
AATAAATGTCTCAGTTGCAG+AGG	0.606207	1_3:-73031526	Msa0139370:five_prime_UTR
AGCAGGAAAACCAACTGATG+GGG	0.615564	1_3:+73029644	None:intergenic
TTTAGTCCAGATGTTGACAA+TGG	0.630788	1_3:+73029965	None:intergenic
ATTAACCATCCAAAATACAA+AGG	0.637507	1_3:+73028718	None:intergenic
CATAACATAACATAGCATAG+TGG	0.643782	1_3:+73028916	None:intergenic
GCAGGAAAACCAACTGATGG+GGG	0.646756	1_3:+73029645	None:intergenic
AAATTGTCAGAGTTTCCTTG+TGG	0.648404	1_3:+73029675	None:intergenic
CTGGAAAAGAGTGAATTGAA+GGG	0.649560	1_3:+73029714	None:intergenic
TATTAATTAGGCATATAACA+TGG	0.660883	1_3:+73028879	None:intergenic
TCCTTGTGGAGAAGAAGGGG+TGG	0.661903	1_3:+73029689	None:intergenic
TGGCAAACTGAGTTGTACCA+GGG	0.668253	1_3:+73029933	None:intergenic
ACCACCCCTTCTTCTCCACA+AGG	0.677252	1_3:-73029690	Msa0139370:CDS
GGCAAACTGAGTTGTACCAG+GGG	0.692504	1_3:+73029934	None:intergenic
CTGACTTCTAAGCATAACAG+TGG	0.723681	1_3:+73028810	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTCTTTATTTTAATCTAA+AGG	-	chr1_3:73029959-73029978	Msa0139370:CDS	10.0%
!!!	TTTCTTTATTTTAATCTAAA+GGG	-	chr1_3:73029960-73029979	Msa0139370:CDS	10.0%
!!	TTATTAAACATACAAAAAAA+TGG	+	chr1_3:73031047-73031066	None:intergenic	10.0%
!!!	TTTTTTTGTATGTTTAATAA+AGG	-	chr1_3:73031047-73031066	Msa0139370:intron	10.0%
!!!	TTTTTTGTATGTTTAATAAA+GGG	-	chr1_3:73031048-73031067	Msa0139370:intron	10.0%
!!	TTCAATAATCATTATTAATT+AGG	+	chr1_3:73031291-73031310	None:intergenic	10.0%
!!	AATTAAATTAAACAAGCAAA+TGG	+	chr1_3:73028756-73028775	None:intergenic	15.0%
!!!	CATATCAATATATGTATTTT+TGG	-	chr1_3:73028909-73028928	Msa0139370:three_prime_UTR	15.0%
!!	ATGTATTAGAAAAAATTGAA+AGG	-	chr1_3:73029174-73029193	Msa0139370:intron	15.0%
!!	AAAAATAACTATAGATACTT+CGG	-	chr1_3:73029440-73029459	Msa0139370:intron	15.0%
!!!	TTAGATCTTGATATTTATTT+TGG	-	chr1_3:73029537-73029556	Msa0139370:intron	15.0%
!!	ATACTAATTTAAATCTTCTA+TGG	-	chr1_3:73030854-73030873	Msa0139370:intron	15.0%
!!!	GTTTACATTATTTTTTTCAA+AGG	+	chr1_3:73031498-73031517	None:intergenic	15.0%
!!	AAATATGACGAGAATTATTT+CGG	-	chr1_3:73028980-73028999	Msa0139370:three_prime_UTR	20.0%
!!	ACAAAAAACACAATCAAATA+TGG	+	chr1_3:73029095-73029114	None:intergenic	20.0%
!!	ACATGATTATTATGTTTAGT+TGG	+	chr1_3:73029398-73029417	None:intergenic	20.0%
!!	TTTCACTAAATCAAGATTAT+GGG	+	chr1_3:73029422-73029441	None:intergenic	20.0%
!!!	TTTTCACTAAATCAAGATTA+TGG	+	chr1_3:73029423-73029442	None:intergenic	20.0%
!!!	TTGTATTCAATTCTTGTTAT+AGG	-	chr1_3:73029490-73029509	Msa0139370:intron	20.0%
!!!	TAGTGATTATGTTAGTTTTT+AGG	-	chr1_3:73029633-73029652	Msa0139370:CDS	20.0%
!!!	AGTGATTATGTTAGTTTTTA+GGG	-	chr1_3:73029634-73029653	Msa0139370:CDS	20.0%
!!	TTAAACTCAAAATGAGTTAA+GGG	+	chr1_3:73029699-73029718	None:intergenic	20.0%
!!!	TAAGAATCCACTTTTTTTAT+AGG	-	chr1_3:73029716-73029735	Msa0139370:CDS	20.0%
!!!	TATTTTGCCTATAAAAAAAG+TGG	+	chr1_3:73029726-73029745	None:intergenic	20.0%
!!	TCAAAATTTGCATTGAAATA+TGG	+	chr1_3:73029940-73029959	None:intergenic	20.0%
!!!	AAGTTTAAGTTTGTTTTTGT+GGG	+	chr1_3:73030084-73030103	None:intergenic	20.0%
!!!	TAAGTTTAAGTTTGTTTTTG+TGG	+	chr1_3:73030085-73030104	None:intergenic	20.0%
!!	TGAGAAATGTATATATTGTT+TGG	+	chr1_3:73030123-73030142	None:intergenic	20.0%
!!	TTATATTACTACTACTAAAG+AGG	-	chr1_3:73030580-73030599	Msa0139370:intron	20.0%
!!!	ACTAATTTGATCTTTTTAGA+CGG	-	chr1_3:73030702-73030721	Msa0139370:intron	20.0%
!!!	CGTTTAAAATCAATTTTTGT+CGG	-	chr1_3:73030778-73030797	Msa0139370:intron	20.0%
!!	TATTAATTAGGCATATAACA+TGG	+	chr1_3:73031279-73031298	None:intergenic	20.0%
!!	CACATTAATAACAACTTAAA+AGG	+	chr1_3:73031379-73031398	None:intergenic	20.0%
!	ATTCTAGATTACTGAAGTAT+AGG	+	chr1_3:73028942-73028961	None:intergenic	25.0%
!!	TACTTCAGTAATCTAGAATT+CGG	-	chr1_3:73028943-73028962	Msa0139370:three_prime_UTR	25.0%
!	GGAAAGGAAAAAAAAACATA+GGG	+	chr1_3:73029074-73029093	None:intergenic	25.0%
!	TGGAAAGGAAAAAAAAACAT+AGG	+	chr1_3:73029075-73029094	None:intergenic	25.0%
!	AAACACAATCAAATATGGAA+AGG	+	chr1_3:73029090-73029109	None:intergenic	25.0%
!!	TGAGGTATTCATGATAATAA+TGG	+	chr1_3:73029118-73029137	None:intergenic	25.0%
!	ATTATCATGAATACCTCAAA+AGG	-	chr1_3:73029120-73029139	Msa0139370:intron	25.0%
!	TTATCATGAATACCTCAAAA+GGG	-	chr1_3:73029121-73029140	Msa0139370:intron	25.0%
!!	TTAATAAAAAACCCCTTTTG+AGG	+	chr1_3:73029136-73029155	None:intergenic	25.0%
!!	AATTCTTGTTATAGGATTGT+TGG	-	chr1_3:73029498-73029517	Msa0139370:intron	25.0%
!!	ATTCTTGTTATAGGATTGTT+GGG	-	chr1_3:73029499-73029518	Msa0139370:intron	25.0%
!	CTTAAACTCAAAATGAGTTA+AGG	+	chr1_3:73029700-73029719	None:intergenic	25.0%
!	TAGGCAAAATATTAGTAAGT+TGG	-	chr1_3:73029735-73029754	Msa0139370:CDS	25.0%
!!!	AAATCAAAAGTGCTTAAAGT+AGG	+	chr1_3:73029799-73029818	None:intergenic	25.0%
!!	TCTTTGCTTGTTAACAATTT+AGG	-	chr1_3:73030353-73030372	Msa0139370:intron	25.0%
!!!	TAGTGAGAAAGTTCATTTTT+CGG	+	chr1_3:73030686-73030705	None:intergenic	25.0%
!	TTTAAATCTTCTATGGCTTT+CGG	-	chr1_3:73030861-73030880	Msa0139370:intron	25.0%
!	ACAATCATCAATTACAACAA+TGG	+	chr1_3:73030999-73031018	None:intergenic	25.0%
!	CAAAATACAAAGGAAACAAT+TGG	+	chr1_3:73031430-73031449	None:intergenic	25.0%
!!	CAATTGTTTCCTTTGTATTT+TGG	-	chr1_3:73031428-73031447	Msa0139370:five_prime_UTR	25.0%
!	ATTAACCATCCAAAATACAA+AGG	+	chr1_3:73031440-73031459	None:intergenic	25.0%
!	TGGTTAATTACTATGTACTA+TGG	-	chr1_3:73031452-73031471	Msa0139370:five_prime_UTR	25.0%
!	AAACAAGCAAATGGTTTGTA+TGG	+	chr1_3:73028747-73028766	None:intergenic	30.0%
	GATACTATTAGAAGTAGTCA+TGG	+	chr1_3:73028807-73028826	None:intergenic	30.0%
	TATCATGAATACCTCAAAAG+GGG	-	chr1_3:73029122-73029141	Msa0139370:intron	30.0%
!!!	AGGGGTTTTTTATTAAGCAT+AGG	-	chr1_3:73029140-73029159	Msa0139370:intron	30.0%
	GAATGATCTTGAAATTGAAC+AGG	-	chr1_3:73029196-73029215	Msa0139370:intron	30.0%
!!	TTGAACTTTGAAACCATCTT+TGG	-	chr1_3:73029265-73029284	Msa0139370:intron	30.0%
!!	TGAACTTTGAAACCATCTTT+GGG	-	chr1_3:73029266-73029285	Msa0139370:intron	30.0%
	ACTAAACATAATCCCAAAGA+TGG	+	chr1_3:73029281-73029300	None:intergenic	30.0%
	TGTTTAGTATGAACTTGAGA+TGG	-	chr1_3:73029293-73029312	Msa0139370:intron	30.0%
	AATAACTATAGATACTTCGG+TGG	-	chr1_3:73029443-73029462	Msa0139370:intron	30.0%
	ATTATCCAATCAAGATCAGA+TGG	+	chr1_3:73030004-73030023	None:intergenic	30.0%
	TTGATTGGATAATCTAGATG+TGG	-	chr1_3:73030011-73030030	Msa0139370:intron	30.0%
!!!	AAGTTTGTTTTTGTGGGATT+TGG	+	chr1_3:73030078-73030097	None:intergenic	30.0%
	AGAGAATTCACAACCAAAAT+TGG	-	chr1_3:73030657-73030676	Msa0139370:intron	30.0%
!!	CATTTTTCGGTTTCCAATTT+TGG	+	chr1_3:73030673-73030692	None:intergenic	30.0%
!	AAAATCAATTTTTGTCGGTG+CGG	-	chr1_3:73030783-73030802	Msa0139370:intron	30.0%
!	TTGATGAAGAAGTGTATCTT+TGG	+	chr1_3:73030811-73030830	None:intergenic	30.0%
!!	TTTGATGATGAAGAGGTATA+AGG	+	chr1_3:73031088-73031107	None:intergenic	30.0%
	TAAATACGAAGTTTCTTGGT+TGG	+	chr1_3:73031219-73031238	None:intergenic	30.0%
	CATAACATAACATAGCATAG+TGG	+	chr1_3:73031242-73031261	None:intergenic	30.0%
!!	TGTTTCCTTTGTATTTTGGA+TGG	-	chr1_3:73031432-73031451	Msa0139370:five_prime_UTR	30.0%
	AATAAATGTCTCAGTTGCAG+AGG	-	chr1_3:73028629-73028648	Msa0139370:three_prime_UTR	35.0%
!	GCAAATGGTTTGTATGGTTA+AGG	+	chr1_3:73028741-73028760	None:intergenic	35.0%
	TGACGAGAATTATTTCGGTT+AGG	-	chr1_3:73028985-73029004	Msa0139370:three_prime_UTR	35.0%
	GAAAAAAAAACATAGGGCTG+TGG	+	chr1_3:73029068-73029087	None:intergenic	35.0%
!!	AAACCGAAAGTGCTTTAAGT+AGG	+	chr1_3:73029676-73029695	None:intergenic	35.0%
!!	TCAAAAGTGCTTAAAGTAGG+AGG	+	chr1_3:73029796-73029815	None:intergenic	35.0%
!	TCTGAAGTATGTAGTTCGAA+TGG	+	chr1_3:73029834-73029853	None:intergenic	35.0%
	TTTAGTCCAGATGTTGACAA+TGG	+	chr1_3:73030193-73030212	None:intergenic	35.0%
	AAAGTAAACTAGTGAAGTGC+TGG	+	chr1_3:73030327-73030346	None:intergenic	35.0%
	CTTCTTCATTTCAGAAGACT+TGG	+	chr1_3:73030412-73030431	None:intergenic	35.0%
!!	TCTTCTGAAATGAAGAAGAG+TGG	-	chr1_3:73030414-73030433	Msa0139370:intron	35.0%
	CTGGAAAAGAGTGAATTGAA+GGG	+	chr1_3:73030444-73030463	None:intergenic	35.0%
	ACTGGAAAAGAGTGAATTGA+AGG	+	chr1_3:73030445-73030464	None:intergenic	35.0%
	AAATTGTCAGAGTTTCCTTG+TGG	+	chr1_3:73030483-73030502	None:intergenic	35.0%
	TTCAAAGGTTTCTTGAGAAG+AGG	-	chr1_3:73030929-73030948	Msa0139370:intron	35.0%
	TCTAAACATGACATGTTGCT+AGG	+	chr1_3:73030972-73030991	None:intergenic	35.0%
	AATAGTACTCTTGGTTGAAG+TGG	-	chr1_3:73031164-73031183	Msa0139370:intron	35.0%
	GTGGTAAATACGAAGTTTCT+TGG	+	chr1_3:73031223-73031242	None:intergenic	35.0%
	ATTAGGCATATAACATGGTG+TGG	+	chr1_3:73031274-73031293	None:intergenic	35.0%
	CTAAGCATAACAGTGGATAT+TGG	+	chr1_3:73031341-73031360	None:intergenic	35.0%
	TGTACTTGCAACTCTCTCAT+TGG	+	chr1_3:73028677-73028696	None:intergenic	40.0%
	GGTAAGCACAACAAGTTTCT+TGG	-	chr1_3:73029217-73029236	Msa0139370:intron	40.0%
!	TTGTTGTCATGTTGGTTGAG+AGG	+	chr1_3:73029563-73029582	None:intergenic	40.0%
!	GTAGGTTCTTGTTGTCATGT+TGG	+	chr1_3:73029571-73029590	None:intergenic	40.0%
!	CCTCCTACTTAAAGCACTTT+CGG	-	chr1_3:73029670-73029689	Msa0139370:CDS	40.0%
	CTTATCGTGATCAGACAGTT+CGG	+	chr1_3:73029912-73029931	None:intergenic	40.0%
!	GGAAGCATGTGTGTATATGA+TGG	-	chr1_3:73030256-73030275	Msa0139370:intron	40.0%
	TGATGGAATTCCTGCAGAAA+AGG	-	chr1_3:73030273-73030292	Msa0139370:intron	40.0%
!	GTAGTGTTTACCTTTTCTGC+AGG	+	chr1_3:73030286-73030305	None:intergenic	40.0%
	GGTGCATGAGATAATGATGA+TGG	-	chr1_3:73030374-73030393	Msa0139370:intron	40.0%
	CATTTCAGAAGACTTGGCAT+TGG	+	chr1_3:73030406-73030425	None:intergenic	40.0%
	AGTTTCCTTGTGGAGAAGAA+GGG	+	chr1_3:73030473-73030492	None:intergenic	40.0%
	TTCTTGAGAAGAGGAGAATC+AGG	-	chr1_3:73030938-73030957	Msa0139370:intron	40.0%
!!!	AGCTGCTTTTGATGATGAAG+AGG	+	chr1_3:73031095-73031114	None:intergenic	40.0%
	TTGAGGGCAAATAGTACTCT+TGG	-	chr1_3:73031155-73031174	Msa0139370:intron	40.0%
	CTGACTTCTAAGCATAACAG+TGG	+	chr1_3:73031348-73031367	None:intergenic	40.0%
!	CTCATTGGTTGTGTTCTGGT+GGG	+	chr1_3:73028662-73028681	None:intergenic	45.0%
!	TCTCATTGGTTGTGTTCTGG+TGG	+	chr1_3:73028663-73028682	None:intergenic	45.0%
!	CTCTCTCATTGGTTGTGTTC+TGG	+	chr1_3:73028666-73028685	None:intergenic	45.0%
	AGCATTTCTCTGCTGCTAAC+TGG	-	chr1_3:73028870-73028889	Msa0139370:three_prime_UTR	45.0%
!	GTGCTTTAAGTAGGAGGTCT+AGG	+	chr1_3:73029667-73029686	None:intergenic	45.0%
!!	CCGAAAGTGCTTTAAGTAGG+AGG	+	chr1_3:73029673-73029692	None:intergenic	45.0%
	GTGCTTAAAGTAGGAGGTCT+GGG	+	chr1_3:73029790-73029809	None:intergenic	45.0%
	AGTGCTTAAAGTAGGAGGTC+TGG	+	chr1_3:73029791-73029810	None:intergenic	45.0%
	CCAATCAAGATCAGATGGTC+TGG	+	chr1_3:73029999-73030018	None:intergenic	45.0%
	CCAGACCATCTGATCTTGAT+TGG	-	chr1_3:73029996-73030015	Msa0139370:intron	45.0%
!	GCAGTCACAAGGTTTGTTTG+TGG	-	chr1_3:73030041-73030060	Msa0139370:intron	45.0%
!	TTTTTGCCTCTTTCCCCTTC+AGG	-	chr1_3:73030167-73030186	Msa0139370:intron	45.0%
	ATGTTGACAATGGCCTGAAG+GGG	+	chr1_3:73030183-73030202	None:intergenic	45.0%
	GATGTTGACAATGGCCTGAA+GGG	+	chr1_3:73030184-73030203	None:intergenic	45.0%
	AGATGTTGACAATGGCCTGA+AGG	+	chr1_3:73030185-73030204	None:intergenic	45.0%
	TTCAGGCCATTGTCAACATC+TGG	-	chr1_3:73030184-73030203	Msa0139370:intron	45.0%
	TGGCAAACTGAGTTGTACCA+GGG	+	chr1_3:73030225-73030244	None:intergenic	45.0%
	ATGGCAAACTGAGTTGTACC+AGG	+	chr1_3:73030226-73030245	None:intergenic	45.0%
	CAGTTTGCCATCCTCTACAA+TGG	-	chr1_3:73030235-73030254	Msa0139370:intron	45.0%
	CATGCTTCCATTGTAGAGGA+TGG	+	chr1_3:73030245-73030264	None:intergenic	45.0%
	CACACATGCTTCCATTGTAG+AGG	+	chr1_3:73030249-73030268	None:intergenic	45.0%
	GTTTCCTTGTGGAGAAGAAG+GGG	+	chr1_3:73030472-73030491	None:intergenic	45.0%
	GAGTTTCCTTGTGGAGAAGA+AGG	+	chr1_3:73030474-73030493	None:intergenic	45.0%
	AGCAGGAAAACCAACTGATG+GGG	+	chr1_3:73030514-73030533	None:intergenic	45.0%
	CAGCAGGAAAACCAACTGAT+GGG	+	chr1_3:73030515-73030534	None:intergenic	45.0%
	CTGAGAAGAGTTCCATTTGC+AGG	-	chr1_3:73030535-73030554	Msa0139370:intron	45.0%
	AGTTCCATTTGCAGGATGCA+AGG	-	chr1_3:73030543-73030562	Msa0139370:intron	45.0%
	CCTCAAGTGGCATCATTACT+GGG	+	chr1_3:73031141-73031160	None:intergenic	45.0%
!	CCAGTAATGATGCCACTTGA+GGG	-	chr1_3:73031139-73031158	Msa0139370:intron	45.0%
	GAGTACTATTTGCCCTCAAG+TGG	+	chr1_3:73031154-73031173	None:intergenic	45.0%
	GACATGAATGCACATGCTAC+TGG	+	chr1_3:73031197-73031216	None:intergenic	45.0%
!!	TATATAAAAAAAAAAAAAGT+AGG	+	chr1_3:73029589-73029608	None:intergenic	5.0%
!!!	TACTTTTTTTTTTTTTATAT+AGG	-	chr1_3:73029588-73029607	Msa0139370:intron	5.0%
	ATGTCTCAGTTGCAGAGGAG+AGG	-	chr1_3:73028634-73028653	Msa0139370:three_prime_UTR	50.0%
	TGTCTCAGTTGCAGAGGAGA+GGG	-	chr1_3:73028635-73028654	Msa0139370:three_prime_UTR	50.0%
	TCTGCTAGCAACAGCTGTCT+TGG	+	chr1_3:73029356-73029375	None:intergenic	50.0%
!	TAGGAGGTCTGGGATTCGAA+TGG	+	chr1_3:73029780-73029799	None:intergenic	50.0%
	GTGATCAGACAGTTCGGATG+TGG	+	chr1_3:73029906-73029925	None:intergenic	50.0%
	GGACTAAATGCAATGACCCC+TGG	-	chr1_3:73030205-73030224	Msa0139370:intron	50.0%
	GGCAAACTGAGTTGTACCAG+GGG	+	chr1_3:73030224-73030243	None:intergenic	50.0%
	AAACCAACTGATGGGGGAGA+AGG	+	chr1_3:73030507-73030526	None:intergenic	50.0%
	GCAGGAAAACCAACTGATGG+GGG	+	chr1_3:73030513-73030532	None:intergenic	50.0%
	GCAGCAGGAAAACCAACTGA+TGG	+	chr1_3:73030516-73030535	None:intergenic	50.0%
	ATGGAACTCTTCTCAGCAGC+AGG	+	chr1_3:73030531-73030550	None:intergenic	50.0%
	AGCACCTTGCATCCTGCAAA+TGG	+	chr1_3:73030550-73030569	None:intergenic	50.0%
	AGTGACTGTCTGCGTGCTAA+TGG	+	chr1_3:73030910-73030929	None:intergenic	50.0%
	CACGCAGACAGTCACTTCAA+AGG	-	chr1_3:73030914-73030933	Msa0139370:intron	50.0%
!	CCCAGTAATGATGCCACTTG+AGG	-	chr1_3:73031138-73031157	Msa0139370:intron	50.0%
	CCCTCAAGTGGCATCATTAC+TGG	+	chr1_3:73031142-73031161	None:intergenic	50.0%
	GTGGTTGACACGCAGTCACA+AGG	-	chr1_3:73030030-73030049	Msa0139370:intron	55.0%
	CAATGGCCTGAAGGGGAAAG+AGG	+	chr1_3:73030176-73030195	None:intergenic	55.0%
	TGGAGAAGAAGGGGTGGTAC+TGG	+	chr1_3:73030463-73030482	None:intergenic	55.0%
	ACCACCCCTTCTTCTCCACA+AGG	-	chr1_3:73030465-73030484	Msa0139370:intron	55.0%
	TCCTTGTGGAGAAGAAGGGG+TGG	+	chr1_3:73030469-73030488	None:intergenic	55.0%
	TTGCCTTCTCCCCCATCAGT+TGG	-	chr1_3:73030501-73030520	Msa0139370:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	73028619	73031558	73028619	ID=Msa0139370;Name=Msa0139370
chr1_3	mRNA	73028619	73031558	73028619	ID=Msa0139370-mRNA-1;Parent=Msa0139370;Name=Msa0139370-mRNA-1;_AED=0.13;_eAED=0.13;_QI=187\|1\|1\|1\|1\|1\|5\|390\|179
chr1_3	exon	73028619	73029108	73028619	ID=Msa0139370-mRNA-1:exon:25488;Parent=Msa0139370-mRNA-1
chr1_3	exon	73029218	73029275	73029218	ID=Msa0139370-mRNA-1:exon:25487;Parent=Msa0139370-mRNA-1
chr1_3	exon	73029613	73029802	73029613	ID=Msa0139370-mRNA-1:exon:25486;Parent=Msa0139370-mRNA-1
chr1_3	exon	73029883	73029988	73029883	ID=Msa0139370-mRNA-1:exon:25485;Parent=Msa0139370-mRNA-1
chr1_3	exon	73031286	73031558	73031286	ID=Msa0139370-mRNA-1:exon:25484;Parent=Msa0139370-mRNA-1
chr1_3	five_prime_UTR	73031372	73031558	73031372	ID=Msa0139370-mRNA-1:five_prime_utr;Parent=Msa0139370-mRNA-1
chr1_3	CDS	73031286	73031371	73031286	ID=Msa0139370-mRNA-1:cds;Parent=Msa0139370-mRNA-1
chr1_3	CDS	73029883	73029988	73029883	ID=Msa0139370-mRNA-1:cds;Parent=Msa0139370-mRNA-1
chr1_3	CDS	73029613	73029802	73029613	ID=Msa0139370-mRNA-1:cds;Parent=Msa0139370-mRNA-1
chr1_3	CDS	73029218	73029275	73029218	ID=Msa0139370-mRNA-1:cds;Parent=Msa0139370-mRNA-1
chr1_3	CDS	73029009	73029108	73029009	ID=Msa0139370-mRNA-1:cds;Parent=Msa0139370-mRNA-1
chr1_3	three_prime_UTR	73028619	73029008	73028619	ID=Msa0139370-mRNA-1:three_prime_utr;Parent=Msa0139370-mRNA-1

Gene Sequence

>Msa0139370

ATGACTACTTCTAATAGTATCAATAATGTTGACATTAACAGCATCAGTGATCAAGAGTCAGTGAAGCATTTCTCTGCTGCTAACTGGCCATTGTCAACATCTGGACTAAATGCAATGACCCCTGGTACAACTCAGTTTGCCATCCTCTACAATGGAAGCATGTGTGTATATGATGGAATTCCTGCAGAAAAGGTGCATGAGATAATGATGATGGCTTCTGCCAATGCCAAGTCTTCTGAAATGAAGAAGAGTGGAATTCCCTTCAATTCACTCTTTTCCAGTACCACCCCTTCTTCTCCACAAGGAAACTCTGACAATTTGCCTTCTCCCCCATCAGTTGGTTTTCCTGCTGCTGAGAAGAGTTCCATTTGCAGGATGCAAGAATTTCCATTAGCACGCAGACAGTCACTTCAAAGGTTTCTTGAGAAGAGGAGAATCAGGGTACGTAGCAAAGCACCTTATACCTCTTCATCATCAAAAGCAGCTAACATCATTGATAACGACTTCAGCCCAGTAATGATGCCACTTGAGGGCAAATAG

Protein sequence

>Msa0139370

MTTSNSINNVDINSISDQESVKHFSAANWPLSTSGLNAMTPGTTQFAILYNGSMCVYDGIPAEKVHEIMMMASANAKSSEMKKSGIPFNSLFSSTTPSSPQGNSDNLPSPPSVGFPAAEKSSICRMQEFPLARRQSLQRFLEKRRIRVRSKAPYTSSSSKAANIIDNDFSPVMMPLEGK*