Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209120 | sp|Q9M246|TIF3A_ARATH | 37.931 | 116 | 64 | 3 | 34 | 149 | 130 | 237 | 1.63e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209120 | G7JR45 | 82.123 | 179 | 7 | 3 | 1 | 155 | 1 | 178 | 9.05e-87 | 261 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1209120 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0139370 | Msa1209120 | 0.935245 | 1.148294e-96 | -8.615850e-47 |
| Msa1209120 | Msa1267010 | 0.936478 | 1.628791e-97 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209120 | MtrunA17_Chr4g0069721 | 82.123 | 179 | 7 | 3 | 1 | 155 | 1 | 178 | 1.74e-90 | 261 |
| Msa1209120 | MtrunA17_Chr2g0302041 | 45.122 | 164 | 61 | 5 | 3 | 145 | 27 | 182 | 1.16e-34 | 120 |
| Msa1209120 | MtrunA17_Chr5g0399851 | 39.167 | 120 | 67 | 3 | 31 | 145 | 17 | 135 | 3.48e-19 | 78.6 |
| Msa1209120 | MtrunA17_Chr5g0399861 | 33.636 | 110 | 69 | 2 | 31 | 139 | 40 | 146 | 2.70e-15 | 69.3 |
| Msa1209120 | MtrunA17_Chr5g0399881 | 33.333 | 108 | 68 | 2 | 31 | 137 | 40 | 144 | 2.92e-14 | 66.6 |
| Msa1209120 | MtrunA17_Chr4g0070271 | 33.000 | 100 | 47 | 2 | 31 | 130 | 97 | 176 | 4.60e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209120 | AT3G43440.1 | 37.931 | 116 | 64 | 3 | 34 | 149 | 130 | 237 | 1.65e-17 | 76.6 |
| Msa1209120 | AT3G43440.1 | 35.870 | 92 | 44 | 1 | 32 | 123 | 42 | 118 | 1.42e-11 | 60.8 |
| Msa1209120 | AT3G43440.2 | 35.593 | 118 | 68 | 3 | 32 | 149 | 42 | 151 | 4.55e-17 | 73.6 |
| Msa1209120 | AT5G20900.1 | 36.306 | 157 | 58 | 6 | 6 | 140 | 37 | 173 | 3.23e-15 | 69.7 |
| Msa1209120 | AT1G19180.2 | 38.835 | 103 | 58 | 3 | 33 | 130 | 58 | 160 | 1.60e-11 | 59.7 |
| Msa1209120 | AT1G19180.1 | 38.835 | 103 | 58 | 3 | 33 | 130 | 124 | 226 | 5.14e-11 | 59.3 |
| Msa1209120 | AT1G19180.3 | 38.835 | 103 | 58 | 3 | 33 | 130 | 124 | 226 | 5.14e-11 | 59.3 |
Find 55 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCAAGTGGCATCATTAC+TGG | 0.158225 | 8_1:-67528609 | None:intergenic |
| TTCAATAATCATTATTAATT+AGG | 0.206912 | 8_1:-67528758 | None:intergenic |
| CAATTGTTTCCTTTGTATTT+TGG | 0.215496 | 8_1:+67528898 | Msa1209120:three_prime_UTR |
| CACATTAATAACAACTTAAA+AGG | 0.259091 | 8_1:-67528846 | None:intergenic |
| GTGGTAAATACGAAGTTTCT+TGG | 0.317024 | 8_1:-67528690 | None:intergenic |
| TTCTTGAGAAGAGGAGAATC+AGG | 0.349802 | 8_1:+67528408 | Msa1209120:CDS |
| AGTGACTGTCTGCGTGCTAA+TGG | 0.374634 | 8_1:-67528377 | None:intergenic |
| CTAAGCATAACAGTGGATAT+TGG | 0.387690 | 8_1:-67528808 | None:intergenic |
| TTTGATGATGAAGAGGTATA+AGG | 0.389455 | 8_1:-67528555 | None:intergenic |
| TGGTTAATTACTATGTACTA+TGG | 0.390081 | 8_1:+67528922 | Msa1209120:three_prime_UTR |
| TTCAGGCCATTGTCAACATC+TGG | 0.403016 | 8_1:+67527654 | Msa1209120:intron |
| CTTCTTCATTTCAGAAGACT+TGG | 0.412093 | 8_1:-67527879 | None:intergenic |
| TGGAGAAGAAGGGGTGGTAC+TGG | 0.425231 | 8_1:-67527930 | None:intergenic |
| CCTCAAGTGGCATCATTACT+GGG | 0.449490 | 8_1:-67528608 | None:intergenic |
| GAGTTTCCTTGTGGAGAAGA+AGG | 0.454205 | 8_1:-67527941 | None:intergenic |
| CAAAATACAAAGGAAACAAT+TGG | 0.463324 | 8_1:-67528897 | None:intergenic |
| GACATGAATGCACATGCTAC+TGG | 0.465462 | 8_1:-67528664 | None:intergenic |
| TGATGGAATTCCTGCAGAAA+AGG | 0.473301 | 8_1:+67527743 | Msa1209120:CDS |
| TTGAGGGCAAATAGTACTCT+TGG | 0.475532 | 8_1:+67528625 | Msa1209120:exon |
| TAAATACGAAGTTTCTTGGT+TGG | 0.477610 | 8_1:-67528686 | None:intergenic |
| CCAGTAATGATGCCACTTGA+GGG | 0.495749 | 8_1:+67528609 | Msa1209120:CDS |
| ACTGGAAAAGAGTGAATTGA+AGG | 0.506999 | 8_1:-67527912 | None:intergenic |
| ATGGCAAACTGAGTTGTACC+AGG | 0.519158 | 8_1:-67527693 | None:intergenic |
| TTCAAAGGTTTCTTGAGAAG+AGG | 0.521134 | 8_1:+67528399 | Msa1209120:CDS |
| AGTTTCCTTGTGGAGAAGAA+GGG | 0.523527 | 8_1:-67527940 | None:intergenic |
| CATTTCAGAAGACTTGGCAT+TGG | 0.534645 | 8_1:-67527873 | None:intergenic |
| CACGCAGACAGTCACTTCAA+AGG | 0.541667 | 8_1:+67528384 | Msa1209120:CDS |
| CCCAGTAATGATGCCACTTG+AGG | 0.545434 | 8_1:+67528608 | Msa1209120:CDS |
| GAGTACTATTTGCCCTCAAG+TGG | 0.556021 | 8_1:-67528621 | None:intergenic |
| CAGCAGGAAAACCAACTGAT+GGG | 0.556381 | 8_1:-67527982 | None:intergenic |
| GCAGCAGGAAAACCAACTGA+TGG | 0.557635 | 8_1:-67527983 | None:intergenic |
| AATAGTACTCTTGGTTGAAG+TGG | 0.558121 | 8_1:+67528634 | Msa1209120:exon |
| GGTGCATGAGATAATGATGA+TGG | 0.567231 | 8_1:+67527844 | Msa1209120:intron |
| GGAAGCATGTGTGTATATGA+TGG | 0.578130 | 8_1:+67527726 | Msa1209120:CDS |
| GGACTAAATGCAATGACCCC+TGG | 0.578930 | 8_1:+67527675 | Msa1209120:CDS |
| CATGCTTCCATTGTAGAGGA+TGG | 0.585189 | 8_1:-67527712 | None:intergenic |
| GATACTATTAGAAGTAGTCA+TGG | 0.588033 | 8_1:-67526263 | None:intergenic |
| TCTTCTGAAATGAAGAAGAG+TGG | 0.591559 | 8_1:+67527884 | Msa1209120:CDS |
| ATTAGGCATATAACATGGTG+TGG | 0.595601 | 8_1:-67528741 | None:intergenic |
| CAGTTTGCCATCCTCTACAA+TGG | 0.597338 | 8_1:+67527705 | Msa1209120:CDS |
| CACACATGCTTCCATTGTAG+AGG | 0.599209 | 8_1:-67527716 | None:intergenic |
| GTTTCCTTGTGGAGAAGAAG+GGG | 0.603228 | 8_1:-67527939 | None:intergenic |
| AGCAGGAAAACCAACTGATG+GGG | 0.615564 | 8_1:-67527981 | None:intergenic |
| TTTAGTCCAGATGTTGACAA+TGG | 0.630788 | 8_1:-67527660 | None:intergenic |
| ATTAACCATCCAAAATACAA+AGG | 0.637507 | 8_1:-67528907 | None:intergenic |
| CATAACATAACATAGCATAG+TGG | 0.643782 | 8_1:-67528709 | None:intergenic |
| GCAGGAAAACCAACTGATGG+GGG | 0.646756 | 8_1:-67527980 | None:intergenic |
| AAATTGTCAGAGTTTCCTTG+TGG | 0.648404 | 8_1:-67527950 | None:intergenic |
| CTGGAAAAGAGTGAATTGAA+GGG | 0.649560 | 8_1:-67527911 | None:intergenic |
| TATTAATTAGGCATATAACA+TGG | 0.660883 | 8_1:-67528746 | None:intergenic |
| TCCTTGTGGAGAAGAAGGGG+TGG | 0.661903 | 8_1:-67527936 | None:intergenic |
| TGGCAAACTGAGTTGTACCA+GGG | 0.668253 | 8_1:-67527692 | None:intergenic |
| ACCACCCCTTCTTCTCCACA+AGG | 0.677252 | 8_1:+67527935 | Msa1209120:CDS |
| GGCAAACTGAGTTGTACCAG+GGG | 0.692504 | 8_1:-67527691 | None:intergenic |
| CTGACTTCTAAGCATAACAG+TGG | 0.723681 | 8_1:-67528815 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAAACATACAAAAAAA+TGG | - | chr8_1:67528517-67528536 | None:intergenic | 10.0% |
| !!! | TTTTTTTGTATGTTTAATAA+AGG | + | chr8_1:67528517-67528536 | Msa1209120:intron | 10.0% |
| !!! | TTTTTTGTATGTTTAATAAA+GGG | + | chr8_1:67528518-67528537 | Msa1209120:intron | 10.0% |
| !! | TTCAATAATCATTATTAATT+AGG | - | chr8_1:67528761-67528780 | None:intergenic | 10.0% |
| !! | ATGTATTAGAAAAAATTGAA+AGG | + | chr8_1:67526639-67526658 | Msa1209120:intron | 15.0% |
| !! | AAAAATAACTATAGATACTT+CGG | + | chr8_1:67526905-67526924 | Msa1209120:intron | 15.0% |
| !!! | TTAGATCTTGATATTTATTT+TGG | + | chr8_1:67527012-67527031 | Msa1209120:intron | 15.0% |
| !! | TGCTTATATAAAAAAAAAGT+AGG | - | chr8_1:67527064-67527083 | None:intergenic | 15.0% |
| !! | ATACTAATTTAAATCTTCTA+TGG | + | chr8_1:67528324-67528343 | Msa1209120:intron | 15.0% |
| !!! | GTTTACATTATTTTTTTCAA+AGG | - | chr8_1:67528968-67528987 | None:intergenic | 15.0% |
| !!! | CATATCAATATATGTACTTT+TGG | + | chr8_1:67526368-67526387 | Msa1209120:intron | 20.0% |
| !! | ATTCTAGATTACTAAAGTAT+AGG | - | chr8_1:67526401-67526420 | None:intergenic | 20.0% |
| !!! | TACTTTAGTAATCTAGAATT+CGG | + | chr8_1:67526402-67526421 | Msa1209120:intron | 20.0% |
| !! | AAATATGACGAGAATTATTT+CGG | + | chr8_1:67526439-67526458 | Msa1209120:intron | 20.0% |
| !! | GAAAGGAAAAAAAAAACATA+GGG | - | chr8_1:67526535-67526554 | None:intergenic | 20.0% |
| !! | ACAAAAAACACAATCAAATA+TGG | - | chr8_1:67526557-67526576 | None:intergenic | 20.0% |
| !! | ACATGATTATTATGTTTAGT+TGG | - | chr8_1:67526863-67526882 | None:intergenic | 20.0% |
| !! | TTTCACTAAATCAAGATTAT+GGG | - | chr8_1:67526887-67526906 | None:intergenic | 20.0% |
| !!! | TTTTCACTAAATCAAGATTA+TGG | - | chr8_1:67526888-67526907 | None:intergenic | 20.0% |
| !!! | TAGTGATTATGTTAGTTTTT+AGG | + | chr8_1:67527104-67527123 | Msa1209120:intron | 20.0% |
| !!! | AGTGATTATGTTAGTTTTTA+GGG | + | chr8_1:67527105-67527124 | Msa1209120:intron | 20.0% |
| !!! | TAAGAATCCACTTTTTTTAT+AGG | + | chr8_1:67527187-67527206 | Msa1209120:intron | 20.0% |
| !!! | TATTTTGCCTATAAAAAAAG+TGG | - | chr8_1:67527197-67527216 | None:intergenic | 20.0% |
| !! | TCAAAATTTGCATTGAAATA+TGG | - | chr8_1:67527411-67527430 | None:intergenic | 20.0% |
| !!! | AAGTTTAAGTTTGTTTTTGT+GGG | - | chr8_1:67527555-67527574 | None:intergenic | 20.0% |
| !!! | TAAGTTTAAGTTTGTTTTTG+TGG | - | chr8_1:67527556-67527575 | None:intergenic | 20.0% |
| !! | TGAGAAATGTATATATTGTT+TGG | - | chr8_1:67527594-67527613 | None:intergenic | 20.0% |
| !! | TTATATTACTACTACTAAAG+AGG | + | chr8_1:67528050-67528069 | Msa1209120:intron | 20.0% |
| !!! | ACTAATTTGATCTTTTTAGA+CGG | + | chr8_1:67528172-67528191 | Msa1209120:intron | 20.0% |
| !!! | CGTTTAAAATCAATTTTTGT+CGG | + | chr8_1:67528248-67528267 | Msa1209120:intron | 20.0% |
| !! | TATTAATTAGGCATATAACA+TGG | - | chr8_1:67528749-67528768 | None:intergenic | 20.0% |
| !! | CACATTAATAACAACTTAAA+AGG | - | chr8_1:67528849-67528868 | None:intergenic | 20.0% |
| ! | GGAAAGGAAAAAAAAAACAT+AGG | - | chr8_1:67526536-67526555 | None:intergenic | 25.0% |
| ! | AAACACAATCAAATATGGAA+AGG | - | chr8_1:67526552-67526571 | None:intergenic | 25.0% |
| ! | GTAGGTATTCATGATAATAA+TGG | - | chr8_1:67526580-67526599 | None:intergenic | 25.0% |
| ! | CCTATAACAAGAATTGAAAT+TGG | - | chr8_1:67526964-67526983 | None:intergenic | 25.0% |
| !! | CCAATTTCAATTCTTGTTAT+AGG | + | chr8_1:67526961-67526980 | Msa1209120:intron | 25.0% |
| !! | AATTCTTGTTATAGGATTGT+TGG | + | chr8_1:67526969-67526988 | Msa1209120:intron | 25.0% |
| ! | TAGGCAAAATATTAGTAAGT+TGG | + | chr8_1:67527206-67527225 | Msa1209120:intron | 25.0% |
| !!! | AAATCAAAAGTGCTTAAAGT+AGG | - | chr8_1:67527270-67527289 | None:intergenic | 25.0% |
| !! | TCTTTGCTTGTTAACAATTT+AGG | + | chr8_1:67527823-67527842 | Msa1209120:intron | 25.0% |
| !!! | TAGTGAGAAAGTTCATTTTT+CGG | - | chr8_1:67528156-67528175 | None:intergenic | 25.0% |
| ! | TTTAAATCTTCTATGGCTTT+CGG | + | chr8_1:67528331-67528350 | Msa1209120:intron | 25.0% |
| ! | ACAATCATCAATTACAACAA+TGG | - | chr8_1:67528469-67528488 | None:intergenic | 25.0% |
| ! | CAAAATACAAAGGAAACAAT+TGG | - | chr8_1:67528900-67528919 | None:intergenic | 25.0% |
| !! | CAATTGTTTCCTTTGTATTT+TGG | + | chr8_1:67528898-67528917 | Msa1209120:three_prime_UTR | 25.0% |
| ! | ATTAACCATCCAAAATACAA+AGG | - | chr8_1:67528910-67528929 | None:intergenic | 25.0% |
| ! | TGGTTAATTACTATGTACTA+TGG | + | chr8_1:67528922-67528941 | Msa1209120:three_prime_UTR | 25.0% |
| AAAAAAAAAACATAGGGCTG+TGG | - | chr8_1:67526529-67526548 | None:intergenic | 30.0% | |
| ! | CTTAATAAAAACCCCTTTTG+AGG | - | chr8_1:67526602-67526621 | None:intergenic | 30.0% |
| ! | AAGGGGTTTTTATTAAGCAT+AGG | + | chr8_1:67526605-67526624 | Msa1209120:intron | 30.0% |
| GAATGATCTTGAAATTGAAC+AGG | + | chr8_1:67526661-67526680 | Msa1209120:intron | 30.0% | |
| !! | TTGAACTTTGAAACCATCTT+TGG | + | chr8_1:67526730-67526749 | Msa1209120:intron | 30.0% |
| !! | TGAACTTTGAAACCATCTTT+GGG | + | chr8_1:67526731-67526750 | Msa1209120:intron | 30.0% |
| ACTAAACATAATCCCAAAGA+TGG | - | chr8_1:67526746-67526765 | None:intergenic | 30.0% | |
| TGTTTAGTATGAACTTGAGA+TGG | + | chr8_1:67526758-67526777 | Msa1209120:intron | 30.0% | |
| AATAACTATAGATACTTCGG+TGG | + | chr8_1:67526908-67526927 | Msa1209120:intron | 30.0% | |
| ! | TTGTTATAGGATTGTTGGTT+GGG | + | chr8_1:67526974-67526993 | Msa1209120:intron | 30.0% |
| ATTATCCAATCAAGATCAGA+TGG | - | chr8_1:67527475-67527494 | None:intergenic | 30.0% | |
| TTGATTGGATAATCTAGATG+TGG | + | chr8_1:67527482-67527501 | Msa1209120:intron | 30.0% | |
| !!! | AAGTTTGTTTTTGTGGGATT+TGG | - | chr8_1:67527549-67527568 | None:intergenic | 30.0% |
| AGAGAATTCACAACCAAAAT+TGG | + | chr8_1:67528127-67528146 | Msa1209120:intron | 30.0% | |
| !! | CATTTTTCGGTTTCCAATTT+TGG | - | chr8_1:67528143-67528162 | None:intergenic | 30.0% |
| ! | AAAATCAATTTTTGTCGGTG+CGG | + | chr8_1:67528253-67528272 | Msa1209120:intron | 30.0% |
| ! | TTGATGAAGAAGTGTATCTT+TGG | - | chr8_1:67528281-67528300 | None:intergenic | 30.0% |
| !! | TTTGATGATGAAGAGGTATA+AGG | - | chr8_1:67528558-67528577 | None:intergenic | 30.0% |
| TAAATACGAAGTTTCTTGGT+TGG | - | chr8_1:67528689-67528708 | None:intergenic | 30.0% | |
| CATAACATAACATAGCATAG+TGG | - | chr8_1:67528712-67528731 | None:intergenic | 30.0% | |
| !! | TGTTTCCTTTGTATTTTGGA+TGG | + | chr8_1:67528902-67528921 | Msa1209120:three_prime_UTR | 30.0% |
| TGACGAGAATTATTTCGGTT+AGG | + | chr8_1:67526444-67526463 | Msa1209120:intron | 35.0% | |
| TCATGAATACCTACCTCAAA+AGG | + | chr8_1:67526586-67526605 | Msa1209120:intron | 35.0% | |
| CATGAATACCTACCTCAAAA+GGG | + | chr8_1:67526587-67526606 | Msa1209120:intron | 35.0% | |
| ATGAATACCTACCTCAAAAG+GGG | + | chr8_1:67526588-67526607 | Msa1209120:intron | 35.0% | |
| !!! | ATAAAAACCCCTTTTGAGGT+AGG | - | chr8_1:67526598-67526617 | None:intergenic | 35.0% |
| ! | CTTGTTATAGGATTGTTGGT+TGG | + | chr8_1:67526973-67526992 | Msa1209120:intron | 35.0% |
| ! | AAACCGATAGTGCTTTAAGT+AGG | - | chr8_1:67527147-67527166 | None:intergenic | 35.0% |
| !! | TCAAAAGTGCTTAAAGTAGG+AGG | - | chr8_1:67527267-67527286 | None:intergenic | 35.0% |
| ! | TCTGAAGTATGTAGTTCGAA+TGG | - | chr8_1:67527305-67527324 | None:intergenic | 35.0% |
| TTGGATAATCTAGATGTGGT+TGG | + | chr8_1:67527486-67527505 | Msa1209120:intron | 35.0% | |
| TTTAGTCCAGATGTTGACAA+TGG | - | chr8_1:67527663-67527682 | None:intergenic | 35.0% | |
| AAAGTAAACTAGTGAAGTGC+TGG | - | chr8_1:67527797-67527816 | None:intergenic | 35.0% | |
| CTTCTTCATTTCAGAAGACT+TGG | - | chr8_1:67527882-67527901 | None:intergenic | 35.0% | |
| !! | TCTTCTGAAATGAAGAAGAG+TGG | + | chr8_1:67527884-67527903 | Msa1209120:CDS | 35.0% |
| CTGGAAAAGAGTGAATTGAA+GGG | - | chr8_1:67527914-67527933 | None:intergenic | 35.0% | |
| ACTGGAAAAGAGTGAATTGA+AGG | - | chr8_1:67527915-67527934 | None:intergenic | 35.0% | |
| AAATTGTCAGAGTTTCCTTG+TGG | - | chr8_1:67527953-67527972 | None:intergenic | 35.0% | |
| TTCAAAGGTTTCTTGAGAAG+AGG | + | chr8_1:67528399-67528418 | Msa1209120:CDS | 35.0% | |
| TCTAAACATGACATGTTGCT+AGG | - | chr8_1:67528442-67528461 | None:intergenic | 35.0% | |
| AATAGTACTCTTGGTTGAAG+TGG | + | chr8_1:67528634-67528653 | Msa1209120:exon | 35.0% | |
| GTGGTAAATACGAAGTTTCT+TGG | - | chr8_1:67528693-67528712 | None:intergenic | 35.0% | |
| ATTAGGCATATAACATGGTG+TGG | - | chr8_1:67528744-67528763 | None:intergenic | 35.0% | |
| CTAAGCATAACAGTGGATAT+TGG | - | chr8_1:67528811-67528830 | None:intergenic | 35.0% | |
| GGTAAGCACAACAAGTTTCT+TGG | + | chr8_1:67526682-67526701 | Msa1209120:intron | 40.0% | |
| ! | TTGTTGTCATGTTGGTTGAG+AGG | - | chr8_1:67527038-67527057 | None:intergenic | 40.0% |
| ! | GTAGGTTCTTGTTGTCATGT+TGG | - | chr8_1:67527046-67527065 | None:intergenic | 40.0% |
| ! | CCTCCTACTTAAAGCACTAT+CGG | + | chr8_1:67527141-67527160 | Msa1209120:intron | 40.0% |
| ! | GGAAGCATGTGTGTATATGA+TGG | + | chr8_1:67527726-67527745 | Msa1209120:CDS | 40.0% |
| TGATGGAATTCCTGCAGAAA+AGG | + | chr8_1:67527743-67527762 | Msa1209120:CDS | 40.0% | |
| ! | GTAGTGTTTACCTTTTCTGC+AGG | - | chr8_1:67527756-67527775 | None:intergenic | 40.0% |
| GGTGCATGAGATAATGATGA+TGG | + | chr8_1:67527844-67527863 | Msa1209120:intron | 40.0% | |
| CATTTCAGAAGACTTGGCAT+TGG | - | chr8_1:67527876-67527895 | None:intergenic | 40.0% | |
| AGTTTCCTTGTGGAGAAGAA+GGG | - | chr8_1:67527943-67527962 | None:intergenic | 40.0% | |
| TTCTTGAGAAGAGGAGAATC+AGG | + | chr8_1:67528408-67528427 | Msa1209120:CDS | 40.0% | |
| !!! | AGCTGCTTTTGATGATGAAG+AGG | - | chr8_1:67528565-67528584 | None:intergenic | 40.0% |
| TTGAGGGCAAATAGTACTCT+TGG | + | chr8_1:67528625-67528644 | Msa1209120:exon | 40.0% | |
| CTGACTTCTAAGCATAACAG+TGG | - | chr8_1:67528818-67528837 | None:intergenic | 40.0% | |
| AGCATTTCTCTGCTGCTAAC+TGG | + | chr8_1:67526329-67526348 | Msa1209120:intron | 45.0% | |
| ! | GTGCTTTAAGTAGGAGGTCT+AGG | - | chr8_1:67527138-67527157 | None:intergenic | 45.0% |
| ! | CCGATAGTGCTTTAAGTAGG+AGG | - | chr8_1:67527144-67527163 | None:intergenic | 45.0% |
| GTGCTTAAAGTAGGAGGTCT+GGG | - | chr8_1:67527261-67527280 | None:intergenic | 45.0% | |
| AGTGCTTAAAGTAGGAGGTC+TGG | - | chr8_1:67527262-67527281 | None:intergenic | 45.0% | |
| TAGACACAGTCAACCACATC+CGG | + | chr8_1:67527361-67527380 | Msa1209120:intron | 45.0% | |
| CTTATCGTGATCAGACAGTC+CGG | - | chr8_1:67527383-67527402 | None:intergenic | 45.0% | |
| CCAATCAAGATCAGATGGTC+TGG | - | chr8_1:67527470-67527489 | None:intergenic | 45.0% | |
| CCAGACCATCTGATCTTGAT+TGG | + | chr8_1:67527467-67527486 | Msa1209120:intron | 45.0% | |
| ! | GCAGTCACAAGGTTTGTTTG+TGG | + | chr8_1:67527512-67527531 | Msa1209120:intron | 45.0% |
| ! | TTTTTGCCTCTTTCCCCTTC+AGG | + | chr8_1:67527637-67527656 | Msa1209120:intron | 45.0% |
| ATGTTGACAATGGCCTGAAG+GGG | - | chr8_1:67527653-67527672 | None:intergenic | 45.0% | |
| GATGTTGACAATGGCCTGAA+GGG | - | chr8_1:67527654-67527673 | None:intergenic | 45.0% | |
| AGATGTTGACAATGGCCTGA+AGG | - | chr8_1:67527655-67527674 | None:intergenic | 45.0% | |
| TTCAGGCCATTGTCAACATC+TGG | + | chr8_1:67527654-67527673 | Msa1209120:intron | 45.0% | |
| TGGCAAACTGAGTTGTACCA+GGG | - | chr8_1:67527695-67527714 | None:intergenic | 45.0% | |
| ATGGCAAACTGAGTTGTACC+AGG | - | chr8_1:67527696-67527715 | None:intergenic | 45.0% | |
| CAGTTTGCCATCCTCTACAA+TGG | + | chr8_1:67527705-67527724 | Msa1209120:CDS | 45.0% | |
| CATGCTTCCATTGTAGAGGA+TGG | - | chr8_1:67527715-67527734 | None:intergenic | 45.0% | |
| CACACATGCTTCCATTGTAG+AGG | - | chr8_1:67527719-67527738 | None:intergenic | 45.0% | |
| GTTTCCTTGTGGAGAAGAAG+GGG | - | chr8_1:67527942-67527961 | None:intergenic | 45.0% | |
| GAGTTTCCTTGTGGAGAAGA+AGG | - | chr8_1:67527944-67527963 | None:intergenic | 45.0% | |
| AGCAGGAAAACCAACTGATG+GGG | - | chr8_1:67527984-67528003 | None:intergenic | 45.0% | |
| CAGCAGGAAAACCAACTGAT+GGG | - | chr8_1:67527985-67528004 | None:intergenic | 45.0% | |
| CTGAGAAGAGTTCCATTTGC+AGG | + | chr8_1:67528005-67528024 | Msa1209120:intron | 45.0% | |
| AGTTCCATTTGCAGGATGCA+AGG | + | chr8_1:67528013-67528032 | Msa1209120:intron | 45.0% | |
| CCTCAAGTGGCATCATTACT+GGG | - | chr8_1:67528611-67528630 | None:intergenic | 45.0% | |
| ! | CCAGTAATGATGCCACTTGA+GGG | + | chr8_1:67528609-67528628 | Msa1209120:CDS | 45.0% |
| GAGTACTATTTGCCCTCAAG+TGG | - | chr8_1:67528624-67528643 | None:intergenic | 45.0% | |
| GACATGAATGCACATGCTAC+TGG | - | chr8_1:67528667-67528686 | None:intergenic | 45.0% | |
| TCTGCTAGCAACAGCAGTCT+TGG | - | chr8_1:67526821-67526840 | None:intergenic | 50.0% | |
| ! | TAGGAGGTCTGGGATTCGAA+TGG | - | chr8_1:67527251-67527270 | None:intergenic | 50.0% |
| GGACTAAATGCAATGACCCC+TGG | + | chr8_1:67527675-67527694 | Msa1209120:CDS | 50.0% | |
| GGCAAACTGAGTTGTACCAG+GGG | - | chr8_1:67527694-67527713 | None:intergenic | 50.0% | |
| AAACCAACTGATGGGGGAGA+AGG | - | chr8_1:67527977-67527996 | None:intergenic | 50.0% | |
| GCAGGAAAACCAACTGATGG+GGG | - | chr8_1:67527983-67528002 | None:intergenic | 50.0% | |
| GCAGCAGGAAAACCAACTGA+TGG | - | chr8_1:67527986-67528005 | None:intergenic | 50.0% | |
| ATGGAACTCTTCTCAGCAGC+AGG | - | chr8_1:67528001-67528020 | None:intergenic | 50.0% | |
| AGCACCTTGCATCCTGCAAA+TGG | - | chr8_1:67528020-67528039 | None:intergenic | 50.0% | |
| AGTGACTGTCTGCGTGCTAA+TGG | - | chr8_1:67528380-67528399 | None:intergenic | 50.0% | |
| CACGCAGACAGTCACTTCAA+AGG | + | chr8_1:67528384-67528403 | Msa1209120:CDS | 50.0% | |
| ! | CCCAGTAATGATGCCACTTG+AGG | + | chr8_1:67528608-67528627 | Msa1209120:CDS | 50.0% |
| CCCTCAAGTGGCATCATTAC+TGG | - | chr8_1:67528612-67528631 | None:intergenic | 50.0% | |
| GTGATCAGACAGTCCGGATG+TGG | - | chr8_1:67527377-67527396 | None:intergenic | 55.0% | |
| CAATGGCCTGAAGGGGAAAG+AGG | - | chr8_1:67527646-67527665 | None:intergenic | 55.0% | |
| TGGAGAAGAAGGGGTGGTAC+TGG | - | chr8_1:67527933-67527952 | None:intergenic | 55.0% | |
| ACCACCCCTTCTTCTCCACA+AGG | + | chr8_1:67527935-67527954 | Msa1209120:CDS | 55.0% | |
| TCCTTGTGGAGAAGAAGGGG+TGG | - | chr8_1:67527939-67527958 | None:intergenic | 55.0% | |
| TTGCCTTCTCCCCCATCAGT+TGG | + | chr8_1:67527971-67527990 | Msa1209120:CDS | 55.0% | |
| GTGGTTGGCACGCAGTCACA+AGG | + | chr8_1:67527501-67527520 | Msa1209120:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 67526265 | 67529028 | 67526265 | ID=Msa1209120;Name=Msa1209120 |
| chr8_1 | mRNA | 67526265 | 67529028 | 67526265 | ID=Msa1209120-mRNA-1;Parent=Msa1209120;Name=Msa1209120-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.5|0.6|1|1|1|5|390|155 |
| chr8_1 | exon | 67526265 | 67526320 | 67526265 | ID=Msa1209120-mRNA-1:exon:22328;Parent=Msa1209120-mRNA-1 |
| chr8_1 | exon | 67527659 | 67527764 | 67527659 | ID=Msa1209120-mRNA-1:exon:22329;Parent=Msa1209120-mRNA-1 |
| chr8_1 | exon | 67527845 | 67527992 | 67527845 | ID=Msa1209120-mRNA-1:exon:22330;Parent=Msa1209120-mRNA-1 |
| chr8_1 | exon | 67528372 | 67528429 | 67528372 | ID=Msa1209120-mRNA-1:exon:22331;Parent=Msa1209120-mRNA-1 |
| chr8_1 | exon | 67528539 | 67529028 | 67528539 | ID=Msa1209120-mRNA-1:exon:22332;Parent=Msa1209120-mRNA-1 |
| chr8_1 | CDS | 67526265 | 67526320 | 67526265 | ID=Msa1209120-mRNA-1:cds;Parent=Msa1209120-mRNA-1 |
| chr8_1 | CDS | 67527659 | 67527764 | 67527659 | ID=Msa1209120-mRNA-1:cds;Parent=Msa1209120-mRNA-1 |
| chr8_1 | CDS | 67527845 | 67527992 | 67527845 | ID=Msa1209120-mRNA-1:cds;Parent=Msa1209120-mRNA-1 |
| chr8_1 | CDS | 67528372 | 67528429 | 67528372 | ID=Msa1209120-mRNA-1:cds;Parent=Msa1209120-mRNA-1 |
| chr8_1 | CDS | 67528539 | 67528638 | 67528539 | ID=Msa1209120-mRNA-1:cds;Parent=Msa1209120-mRNA-1 |
| chr8_1 | three_prime_UTR | 67528639 | 67529028 | 67528639 | ID=Msa1209120-mRNA-1:three_prime_utr;Parent=Msa1209120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
