Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267010 | XP_003609915.1 | 95.531 | 179 | 7 | 1 | 1 | 179 | 1 | 178 | 4.75e-119 | 344 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267010 | sp|Q9C5K8|TIF3B_ARATH | 41.085 | 129 | 55 | 6 | 45 | 164 | 57 | 173 | 2.72e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267010 | G7JR45 | 95.531 | 179 | 7 | 1 | 1 | 179 | 1 | 178 | 2.27e-119 | 344 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1267010 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0139370 | Msa1267010 | 0.999633 | 0.000000e+00 | -8.615850e-47 |
| Msa1209120 | Msa1267010 | 0.936478 | 1.628791e-97 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267010 | MtrunA17_Chr4g0069721 | 95.531 | 179 | 7 | 1 | 1 | 179 | 1 | 178 | 4.36e-123 | 344 |
| Msa1267010 | MtrunA17_Chr2g0302041 | 54.545 | 154 | 52 | 4 | 25 | 169 | 38 | 182 | 6.38e-46 | 149 |
| Msa1267010 | MtrunA17_Chr5g0399851 | 35.338 | 133 | 68 | 3 | 41 | 169 | 17 | 135 | 4.37e-17 | 73.9 |
| Msa1267010 | MtrunA17_Chr5g0399861 | 30.081 | 123 | 70 | 2 | 41 | 163 | 40 | 146 | 3.69e-13 | 64.3 |
| Msa1267010 | MtrunA17_Chr5g0399881 | 29.508 | 122 | 68 | 3 | 41 | 161 | 40 | 144 | 3.30e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267010 | AT5G20900.1 | 41.085 | 129 | 55 | 6 | 45 | 164 | 57 | 173 | 2.77e-18 | 78.6 |
| Msa1267010 | AT3G43440.1 | 34.615 | 130 | 63 | 4 | 44 | 173 | 130 | 237 | 1.29e-15 | 72.4 |
| Msa1267010 | AT3G43440.2 | 32.576 | 132 | 67 | 4 | 42 | 173 | 42 | 151 | 4.87e-15 | 68.9 |
| Msa1267010 | AT1G19180.2 | 33.929 | 112 | 65 | 2 | 43 | 154 | 58 | 160 | 6.37e-11 | 58.9 |
Find 70 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCAAGTGGCATCATTAC+TGG | 0.158225 | 8_2:+72091913 | None:intergenic |
| TTCAATAATCATTATTAATT+AGG | 0.206912 | 8_2:+72091764 | None:intergenic |
| CAATTGTTTCCTTTGTATTT+TGG | 0.215496 | 8_2:-72091624 | Msa1267010:three_prime_UTR |
| CTCTCTCATTGGTTGTGTTC+TGG | 0.246248 | 8_2:+72094429 | None:intergenic |
| CACATTAATAACAACTTAAA+AGG | 0.259091 | 8_2:+72091676 | None:intergenic |
| GTGGTAAATACGAAGTTTCT+TGG | 0.317024 | 8_2:+72091832 | None:intergenic |
| AAACAAGCAAATGGTTTGTA+TGG | 0.336684 | 8_2:+72094348 | None:intergenic |
| CTGAGAAGAGTTCCATTTGC+AGG | 0.345657 | 8_2:-72092517 | Msa1267010:CDS |
| TTCTTGAGAAGAGGAGAATC+AGG | 0.349802 | 8_2:-72092114 | Msa1267010:intron |
| GCAAATGGTTTGTATGGTTA+AGG | 0.359684 | 8_2:+72094354 | None:intergenic |
| AGTGACTGTCTGCGTGCTAA+TGG | 0.374634 | 8_2:+72092145 | None:intergenic |
| CTAAGCATAACAGTGGATAT+TGG | 0.387690 | 8_2:+72091714 | None:intergenic |
| TTTGATGATGAAGAGGTATA+AGG | 0.389455 | 8_2:+72091967 | None:intergenic |
| TGGTTAATTACTATGTACTA+TGG | 0.390081 | 8_2:-72091600 | Msa1267010:three_prime_UTR |
| TTCAGGCCATTGTCAACATC+TGG | 0.403016 | 8_2:-72092868 | Msa1267010:intron |
| TGTACTTGCAACTCTCTCAT+TGG | 0.407683 | 8_2:+72094418 | None:intergenic |
| AGCATTTCTCTGCTGCTAAC+TGG | 0.409603 | 8_2:-72094222 | Msa1267010:intron |
| CTTCTTCATTTCAGAAGACT+TGG | 0.412093 | 8_2:+72092643 | None:intergenic |
| TGGAGAAGAAGGGGTGGTAC+TGG | 0.425231 | 8_2:+72092592 | None:intergenic |
| AATTAAATTAAACAAGCAAA+TGG | 0.445337 | 8_2:+72094339 | None:intergenic |
| CCTCAAGTGGCATCATTACT+GGG | 0.449490 | 8_2:+72091914 | None:intergenic |
| GAGTTTCCTTGTGGAGAAGA+AGG | 0.454205 | 8_2:+72092581 | None:intergenic |
| CAAAATACAAAGGAAACAAT+TGG | 0.463324 | 8_2:+72091625 | None:intergenic |
| GACATGAATGCACATGCTAC+TGG | 0.465462 | 8_2:+72091858 | None:intergenic |
| TGATGGAATTCCTGCAGAAA+AGG | 0.473301 | 8_2:-72092779 | Msa1267010:intron |
| AGCACCTTGCATCCTGCAAA+TGG | 0.473425 | 8_2:+72092505 | None:intergenic |
| TTGAGGGCAAATAGTACTCT+TGG | 0.475532 | 8_2:-72091897 | Msa1267010:exon |
| TAAATACGAAGTTTCTTGGT+TGG | 0.477610 | 8_2:+72091836 | None:intergenic |
| ATGGAACTCTTCTCAGCAGC+AGG | 0.483824 | 8_2:+72092524 | None:intergenic |
| TCTCATTGGTTGTGTTCTGG+TGG | 0.486999 | 8_2:+72094432 | None:intergenic |
| CTCATTGGTTGTGTTCTGGT+GGG | 0.492540 | 8_2:+72094433 | None:intergenic |
| CCAGTAATGATGCCACTTGA+GGG | 0.495749 | 8_2:-72091913 | Msa1267010:CDS |
| ACTGGAAAAGAGTGAATTGA+AGG | 0.506999 | 8_2:+72092610 | None:intergenic |
| ATGGCAAACTGAGTTGTACC+AGG | 0.519158 | 8_2:+72092829 | None:intergenic |
| TTCAAAGGTTTCTTGAGAAG+AGG | 0.521134 | 8_2:-72092123 | Msa1267010:CDS |
| AGTTTCCTTGTGGAGAAGAA+GGG | 0.523527 | 8_2:+72092582 | None:intergenic |
| TGTCTCAGTTGCAGAGGAGA+GGG | 0.525526 | 8_2:-72094457 | Msa1267010:five_prime_UTR |
| CATTTCAGAAGACTTGGCAT+TGG | 0.534645 | 8_2:+72092649 | None:intergenic |
| CACGCAGACAGTCACTTCAA+AGG | 0.541667 | 8_2:-72092138 | Msa1267010:CDS |
| CCCAGTAATGATGCCACTTG+AGG | 0.545434 | 8_2:-72091914 | Msa1267010:CDS |
| GAGTACTATTTGCCCTCAAG+TGG | 0.556021 | 8_2:+72091901 | None:intergenic |
| CAGCAGGAAAACCAACTGAT+GGG | 0.556381 | 8_2:+72092540 | None:intergenic |
| AGTTCCATTTGCAGGATGCA+AGG | 0.556537 | 8_2:-72092509 | Msa1267010:intron |
| GCAGCAGGAAAACCAACTGA+TGG | 0.557635 | 8_2:+72092539 | None:intergenic |
| AATAGTACTCTTGGTTGAAG+TGG | 0.558121 | 8_2:-72091888 | Msa1267010:exon |
| GGTGCATGAGATAATGATGA+TGG | 0.567231 | 8_2:-72092678 | Msa1267010:CDS |
| GGAAGCATGTGTGTATATGA+TGG | 0.578130 | 8_2:-72092796 | Msa1267010:CDS |
| GGACTAAATGCAATGACCCC+TGG | 0.578930 | 8_2:-72092847 | Msa1267010:CDS |
| CATGCTTCCATTGTAGAGGA+TGG | 0.585189 | 8_2:+72092810 | None:intergenic |
| GATACTATTAGAAGTAGTCA+TGG | 0.588033 | 8_2:+72094288 | None:intergenic |
| TCTTCTGAAATGAAGAAGAG+TGG | 0.591559 | 8_2:-72092638 | Msa1267010:CDS |
| ATTAGGCATATAACATGGTG+TGG | 0.595601 | 8_2:+72091781 | None:intergenic |
| CAGTTTGCCATCCTCTACAA+TGG | 0.597338 | 8_2:-72092817 | Msa1267010:CDS |
| CACACATGCTTCCATTGTAG+AGG | 0.599209 | 8_2:+72092806 | None:intergenic |
| ATGTCTCAGTTGCAGAGGAG+AGG | 0.599523 | 8_2:-72094458 | Msa1267010:five_prime_UTR |
| GTTTCCTTGTGGAGAAGAAG+GGG | 0.603228 | 8_2:+72092583 | None:intergenic |
| AATAAATGTCTCAGTTGCAG+AGG | 0.606207 | 8_2:-72094463 | Msa1267010:five_prime_UTR |
| AGCAGGAAAACCAACTGATG+GGG | 0.615564 | 8_2:+72092541 | None:intergenic |
| TTTAGTCCAGATGTTGACAA+TGG | 0.630788 | 8_2:+72092862 | None:intergenic |
| ATTAACCATCCAAAATACAA+AGG | 0.637507 | 8_2:+72091615 | None:intergenic |
| CATAACATAACATAGCATAG+TGG | 0.643782 | 8_2:+72091813 | None:intergenic |
| GCAGGAAAACCAACTGATGG+GGG | 0.646756 | 8_2:+72092542 | None:intergenic |
| AAATTGTCAGAGTTTCCTTG+TGG | 0.648404 | 8_2:+72092572 | None:intergenic |
| CTGGAAAAGAGTGAATTGAA+GGG | 0.649560 | 8_2:+72092611 | None:intergenic |
| TATTAATTAGGCATATAACA+TGG | 0.660883 | 8_2:+72091776 | None:intergenic |
| TCCTTGTGGAGAAGAAGGGG+TGG | 0.661903 | 8_2:+72092586 | None:intergenic |
| TGGCAAACTGAGTTGTACCA+GGG | 0.668253 | 8_2:+72092830 | None:intergenic |
| ACCACCCCTTCTTCTCCACA+AGG | 0.677252 | 8_2:-72092587 | Msa1267010:CDS |
| GGCAAACTGAGTTGTACCAG+GGG | 0.692504 | 8_2:+72092831 | None:intergenic |
| CTGACTTCTAAGCATAACAG+TGG | 0.723681 | 8_2:+72091707 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTATAT+AGG | - | chr8_2:72092525-72092544 | Msa1267010:CDS | 0.0% |
| !!! | ATTTCTTTATTTTAATCTAA+AGG | - | chr8_2:72092896-72092915 | Msa1267010:intron | 10.0% |
| !!! | TTTCTTTATTTTAATCTAAA+GGG | - | chr8_2:72092897-72092916 | Msa1267010:intron | 10.0% |
| !! | TTATTAAACATACAAAAAAA+TGG | + | chr8_2:72093984-72094003 | None:intergenic | 10.0% |
| !!! | TTTTTTTGTATGTTTAATAA+AGG | - | chr8_2:72093984-72094003 | Msa1267010:intron | 10.0% |
| !!! | TTTTTTGTATGTTTAATAAA+GGG | - | chr8_2:72093985-72094004 | Msa1267010:intron | 10.0% |
| !! | TTCAATAATCATTATTAATT+AGG | + | chr8_2:72094228-72094247 | None:intergenic | 10.0% |
| !! | AATTAAATTAAACAAGCAAA+TGG | + | chr8_2:72091653-72091672 | None:intergenic | 15.0% |
| !!! | CATATCAATATATGTATTTT+TGG | - | chr8_2:72091806-72091825 | Msa1267010:three_prime_UTR | 15.0% |
| !! | ATGTATTAGAAAAAATTGAA+AGG | - | chr8_2:72092077-72092096 | Msa1267010:intron | 15.0% |
| !! | AAAAATAACTATAGATACTT+CGG | - | chr8_2:72092364-72092383 | Msa1267010:intron | 15.0% |
| !!! | TTAGATCTTGATATTTATTT+TGG | - | chr8_2:72092471-72092490 | Msa1267010:intron | 15.0% |
| !! | ATACTAATTTAAATCTTCTA+TGG | - | chr8_2:72093791-72093810 | Msa1267010:intron | 15.0% |
| !!! | GTTTACATTATTTTTTTCAA+AGG | + | chr8_2:72094435-72094454 | None:intergenic | 15.0% |
| !! | AAATATGACGAGAATTATTT+CGG | - | chr8_2:72091877-72091896 | Msa1267010:three_prime_UTR | 20.0% |
| !! | ACAAAAAACACAATCAAATA+TGG | + | chr8_2:72091996-72092015 | None:intergenic | 20.0% |
| !! | ACATGATTATTATGTTTAGT+TGG | + | chr8_2:72092322-72092341 | None:intergenic | 20.0% |
| !! | TTTCACTAAATCAAGATTAT+GGG | + | chr8_2:72092346-72092365 | None:intergenic | 20.0% |
| !!! | TTTTCACTAAATCAAGATTA+TGG | + | chr8_2:72092347-72092366 | None:intergenic | 20.0% |
| !!! | TCAATTTCAATTCTTGTTAT+AGG | - | chr8_2:72092420-72092439 | Msa1267010:intron | 20.0% |
| !!! | TAGTGATTATGTTAGTTTTT+AGG | - | chr8_2:72092570-72092589 | Msa1267010:CDS | 20.0% |
| !!! | AGTGATTATGTTAGTTTTTA+GGG | - | chr8_2:72092571-72092590 | Msa1267010:CDS | 20.0% |
| !! | TTAAACTCAAAATGAGTTAA+GGG | + | chr8_2:72092636-72092655 | None:intergenic | 20.0% |
| !!! | TAAGAATCCACTTTTTTTAT+AGG | - | chr8_2:72092653-72092672 | Msa1267010:CDS | 20.0% |
| !!! | TATTTTGCCTATAAAAAAAG+TGG | + | chr8_2:72092663-72092682 | None:intergenic | 20.0% |
| !! | TCAAAATTTGCATTGAAATA+TGG | + | chr8_2:72092877-72092896 | None:intergenic | 20.0% |
| !!! | AAGTTTAAGTTTGTTTTTGT+GGG | + | chr8_2:72093021-72093040 | None:intergenic | 20.0% |
| !!! | TAAGTTTAAGTTTGTTTTTG+TGG | + | chr8_2:72093022-72093041 | None:intergenic | 20.0% |
| !! | TGAGAAATGTATATATTGTT+TGG | + | chr8_2:72093060-72093079 | None:intergenic | 20.0% |
| !! | TTATATTACTACTACTAAAG+AGG | - | chr8_2:72093517-72093536 | Msa1267010:intron | 20.0% |
| !!! | ACTAATTTGATCTTTTTAGA+CGG | - | chr8_2:72093639-72093658 | Msa1267010:intron | 20.0% |
| !!! | CGTTTAAAATCAATTTTTGT+CGG | - | chr8_2:72093715-72093734 | Msa1267010:intron | 20.0% |
| !! | TATTAATTAGGCATATAACA+TGG | + | chr8_2:72094216-72094235 | None:intergenic | 20.0% |
| !! | CACATTAATAACAACTTAAA+AGG | + | chr8_2:72094316-72094335 | None:intergenic | 20.0% |
| ! | ATTCTAGATTACTGAAGTAT+AGG | + | chr8_2:72091839-72091858 | None:intergenic | 25.0% |
| !! | TACTTCAGTAATCTAGAATT+CGG | - | chr8_2:72091840-72091859 | Msa1267010:three_prime_UTR | 25.0% |
| ! | GGAAAGGAAAAAAAAACATA+GGG | + | chr8_2:72091975-72091994 | None:intergenic | 25.0% |
| ! | TGGAAAGGAAAAAAAAACAT+AGG | + | chr8_2:72091976-72091995 | None:intergenic | 25.0% |
| ! | AAACACAATCAAATATGGAA+AGG | + | chr8_2:72091991-72092010 | None:intergenic | 25.0% |
| !! | TGAGGTATTCATGATAATAA+TGG | + | chr8_2:72092019-72092038 | None:intergenic | 25.0% |
| ! | ATTATCATGAATACCTCAAA+AGG | - | chr8_2:72092021-72092040 | Msa1267010:intron | 25.0% |
| ! | TTATCATGAATACCTCAAAA+GGG | - | chr8_2:72092022-72092041 | Msa1267010:intron | 25.0% |
| !! | AATAAAAAAAACCCCTTTTG+AGG | + | chr8_2:72092037-72092056 | None:intergenic | 25.0% |
| !!! | GGGTTTTTTTTATTAAGCAT+AGG | - | chr8_2:72092043-72092062 | Msa1267010:intron | 25.0% |
| !!! | GGATTTAAATGTTTTGTTCT+AGG | - | chr8_2:72092141-72092160 | Msa1267010:CDS | 25.0% |
| !! | AATTCTTGTTATAGGATTGT+TGG | - | chr8_2:72092428-72092447 | Msa1267010:intron | 25.0% |
| ! | CTTAAACTCAAAATGAGTTA+AGG | + | chr8_2:72092637-72092656 | None:intergenic | 25.0% |
| ! | TAGGCAAAATATTAGTAAGT+TGG | - | chr8_2:72092672-72092691 | Msa1267010:CDS | 25.0% |
| !!! | AAATCAAAAGTGCTTAAAGT+AGG | + | chr8_2:72092736-72092755 | None:intergenic | 25.0% |
| !! | TCTTTGCTTGTTAACAATTT+AGG | - | chr8_2:72093290-72093309 | Msa1267010:intron | 25.0% |
| !!! | TAGTGAGAAAGTTCATTTTT+CGG | + | chr8_2:72093623-72093642 | None:intergenic | 25.0% |
| ! | TTTAAATCTTCTATGGCTTT+CGG | - | chr8_2:72093798-72093817 | Msa1267010:intron | 25.0% |
| ! | ACAATCATCAATTACAACAA+TGG | + | chr8_2:72093936-72093955 | None:intergenic | 25.0% |
| ! | CAAAATACAAAGGAAACAAT+TGG | + | chr8_2:72094367-72094386 | None:intergenic | 25.0% |
| !! | CAATTGTTTCCTTTGTATTT+TGG | - | chr8_2:72094365-72094384 | Msa1267010:five_prime_UTR | 25.0% |
| ! | ATTAACCATCCAAAATACAA+AGG | + | chr8_2:72094377-72094396 | None:intergenic | 25.0% |
| ! | TGGTTAATTACTATGTACTA+TGG | - | chr8_2:72094389-72094408 | Msa1267010:five_prime_UTR | 25.0% |
| ! | AAACAAGCAAATGGTTTGTA+TGG | + | chr8_2:72091644-72091663 | None:intergenic | 30.0% |
| GATACTATTAGAAGTAGTCA+TGG | + | chr8_2:72091704-72091723 | None:intergenic | 30.0% | |
| TATCATGAATACCTCAAAAG+GGG | - | chr8_2:72092023-72092042 | Msa1267010:intron | 30.0% | |
| GAATGATCTTGAAATTGAAC+AGG | - | chr8_2:72092099-72092118 | Msa1267010:intron | 30.0% | |
| !! | TTGAACTTTGAAACCATCTT+TGG | - | chr8_2:72092189-72092208 | Msa1267010:intron | 30.0% |
| !! | TGAACTTTGAAACCATCTTT+GGG | - | chr8_2:72092190-72092209 | Msa1267010:intron | 30.0% |
| ACTAAACATAATCCCAAAGA+TGG | + | chr8_2:72092205-72092224 | None:intergenic | 30.0% | |
| TGTTTAGTATGAACTTGAGA+TGG | - | chr8_2:72092217-72092236 | Msa1267010:intron | 30.0% | |
| AATAACTATAGATACTTCGG+TGG | - | chr8_2:72092367-72092386 | Msa1267010:intron | 30.0% | |
| ! | TTGTTATAGGATTGTTGGTT+GGG | - | chr8_2:72092433-72092452 | Msa1267010:intron | 30.0% |
| ATTATCCAATCAAGATCAGA+TGG | + | chr8_2:72092941-72092960 | None:intergenic | 30.0% | |
| TTGATTGGATAATCTAGATG+TGG | - | chr8_2:72092948-72092967 | Msa1267010:intron | 30.0% | |
| !!! | AAGTTTGTTTTTGTGGGATT+TGG | + | chr8_2:72093015-72093034 | None:intergenic | 30.0% |
| AGAGAATTCACAACCAAAAT+TGG | - | chr8_2:72093594-72093613 | Msa1267010:intron | 30.0% | |
| !! | CATTTTTCGGTTTCCAATTT+TGG | + | chr8_2:72093610-72093629 | None:intergenic | 30.0% |
| ! | AAAATCAATTTTTGTCGGTG+CGG | - | chr8_2:72093720-72093739 | Msa1267010:intron | 30.0% |
| ! | TTGATGAAGAAGTGTATCTT+TGG | + | chr8_2:72093748-72093767 | None:intergenic | 30.0% |
| !! | TTTGATGATGAAGAGGTATA+AGG | + | chr8_2:72094025-72094044 | None:intergenic | 30.0% |
| TAAATACGAAGTTTCTTGGT+TGG | + | chr8_2:72094156-72094175 | None:intergenic | 30.0% | |
| CATAACATAACATAGCATAG+TGG | + | chr8_2:72094179-72094198 | None:intergenic | 30.0% | |
| !! | TGTTTCCTTTGTATTTTGGA+TGG | - | chr8_2:72094369-72094388 | Msa1267010:five_prime_UTR | 30.0% |
| AATAAATGTCTCAGTTGCAG+AGG | - | chr8_2:72091526-72091545 | Msa1267010:three_prime_UTR | 35.0% | |
| ! | GCAAATGGTTTGTATGGTTA+AGG | + | chr8_2:72091638-72091657 | None:intergenic | 35.0% |
| TGACGAGAATTATTTCGGTT+AGG | - | chr8_2:72091882-72091901 | Msa1267010:three_prime_UTR | 35.0% | |
| GAAAAAAAAACATAGGGCTG+TGG | + | chr8_2:72091969-72091988 | None:intergenic | 35.0% | |
| ! | CTTGTTATAGGATTGTTGGT+TGG | - | chr8_2:72092432-72092451 | Msa1267010:intron | 35.0% |
| !! | AAACCGAAAGTGCTTTAAGT+AGG | + | chr8_2:72092613-72092632 | None:intergenic | 35.0% |
| !! | TCAAAAGTGCTTAAAGTAGG+AGG | + | chr8_2:72092733-72092752 | None:intergenic | 35.0% |
| ! | TCTGAAGTATGTAGTTCGAA+TGG | + | chr8_2:72092771-72092790 | None:intergenic | 35.0% |
| TTTAGTCCAGATGTTGACAA+TGG | + | chr8_2:72093130-72093149 | None:intergenic | 35.0% | |
| AAAGTAAACTAGTGAAGTGC+TGG | + | chr8_2:72093264-72093283 | None:intergenic | 35.0% | |
| CTTCTTCATTTCAGAAGACT+TGG | + | chr8_2:72093349-72093368 | None:intergenic | 35.0% | |
| !! | TCTTCTGAAATGAAGAAGAG+TGG | - | chr8_2:72093351-72093370 | Msa1267010:intron | 35.0% |
| CTGGAAAAGAGTGAATTGAA+GGG | + | chr8_2:72093381-72093400 | None:intergenic | 35.0% | |
| ACTGGAAAAGAGTGAATTGA+AGG | + | chr8_2:72093382-72093401 | None:intergenic | 35.0% | |
| AAATTGTCAGAGTTTCCTTG+TGG | + | chr8_2:72093420-72093439 | None:intergenic | 35.0% | |
| TTCAAAGGTTTCTTGAGAAG+AGG | - | chr8_2:72093866-72093885 | Msa1267010:intron | 35.0% | |
| TCTAAACATGACATGTTGCT+AGG | + | chr8_2:72093909-72093928 | None:intergenic | 35.0% | |
| AATAGTACTCTTGGTTGAAG+TGG | - | chr8_2:72094101-72094120 | Msa1267010:intron | 35.0% | |
| GTGGTAAATACGAAGTTTCT+TGG | + | chr8_2:72094160-72094179 | None:intergenic | 35.0% | |
| ATTAGGCATATAACATGGTG+TGG | + | chr8_2:72094211-72094230 | None:intergenic | 35.0% | |
| CTAAGCATAACAGTGGATAT+TGG | + | chr8_2:72094278-72094297 | None:intergenic | 35.0% | |
| TGTACTTGCAACTCTCTCAT+TGG | + | chr8_2:72091574-72091593 | None:intergenic | 40.0% | |
| GGTAAGCACAACAAGTTTCT+TGG | - | chr8_2:72092120-72092139 | Msa1267010:CDS | 40.0% | |
| ! | TTGTTGTCATGTTGGTTGAG+AGG | + | chr8_2:72092497-72092516 | None:intergenic | 40.0% |
| ! | GTAGGTTCTTGTTGTCATGT+TGG | + | chr8_2:72092505-72092524 | None:intergenic | 40.0% |
| ! | CCTCCTACTTAAAGCACTTT+CGG | - | chr8_2:72092607-72092626 | Msa1267010:CDS | 40.0% |
| ! | GGAAGCATGTGTGTATATGA+TGG | - | chr8_2:72093193-72093212 | Msa1267010:intron | 40.0% |
| TGATGGAATTCCTGCAGAAA+AGG | - | chr8_2:72093210-72093229 | Msa1267010:intron | 40.0% | |
| ! | GTAGTGTTTACCTTTTCTGC+AGG | + | chr8_2:72093223-72093242 | None:intergenic | 40.0% |
| GGTGCATGAGATAATGATGA+TGG | - | chr8_2:72093311-72093330 | Msa1267010:intron | 40.0% | |
| CATTTCAGAAGACTTGGCAT+TGG | + | chr8_2:72093343-72093362 | None:intergenic | 40.0% | |
| AGTTTCCTTGTGGAGAAGAA+GGG | + | chr8_2:72093410-72093429 | None:intergenic | 40.0% | |
| TTCTTGAGAAGAGGAGAATC+AGG | - | chr8_2:72093875-72093894 | Msa1267010:intron | 40.0% | |
| !!! | AGCTGCTTTTGATGATGAAG+AGG | + | chr8_2:72094032-72094051 | None:intergenic | 40.0% |
| TTGAGGGCAAATAGTACTCT+TGG | - | chr8_2:72094092-72094111 | Msa1267010:intron | 40.0% | |
| CTGACTTCTAAGCATAACAG+TGG | + | chr8_2:72094285-72094304 | None:intergenic | 40.0% | |
| ! | CTCATTGGTTGTGTTCTGGT+GGG | + | chr8_2:72091559-72091578 | None:intergenic | 45.0% |
| ! | TCTCATTGGTTGTGTTCTGG+TGG | + | chr8_2:72091560-72091579 | None:intergenic | 45.0% |
| ! | CTCTCTCATTGGTTGTGTTC+TGG | + | chr8_2:72091563-72091582 | None:intergenic | 45.0% |
| AGCATTTCTCTGCTGCTAAC+TGG | - | chr8_2:72091767-72091786 | Msa1267010:three_prime_UTR | 45.0% | |
| ! | GTGCTTTAAGTAGGAGGTCT+AGG | + | chr8_2:72092604-72092623 | None:intergenic | 45.0% |
| !! | CCGAAAGTGCTTTAAGTAGG+AGG | + | chr8_2:72092610-72092629 | None:intergenic | 45.0% |
| GTGCTTAAAGTAGGAGGTCT+GGG | + | chr8_2:72092727-72092746 | None:intergenic | 45.0% | |
| AGTGCTTAAAGTAGGAGGTC+TGG | + | chr8_2:72092728-72092747 | None:intergenic | 45.0% | |
| TAGACACAGTCAACCACATC+CGG | - | chr8_2:72092827-72092846 | Msa1267010:CDS | 45.0% | |
| CTTATCGTGATCAGACAGTC+CGG | + | chr8_2:72092849-72092868 | None:intergenic | 45.0% | |
| CCAATCAAGATCAGATGGTC+TGG | + | chr8_2:72092936-72092955 | None:intergenic | 45.0% | |
| CCAGACCATCTGATCTTGAT+TGG | - | chr8_2:72092933-72092952 | Msa1267010:intron | 45.0% | |
| ! | GCAGTCACAAGGTTTGTTTG+TGG | - | chr8_2:72092978-72092997 | Msa1267010:intron | 45.0% |
| ! | TTTTTGCCTCTTTCCCCTTC+AGG | - | chr8_2:72093104-72093123 | Msa1267010:intron | 45.0% |
| ATGTTGACAATGGCCTGAAG+GGG | + | chr8_2:72093120-72093139 | None:intergenic | 45.0% | |
| GATGTTGACAATGGCCTGAA+GGG | + | chr8_2:72093121-72093140 | None:intergenic | 45.0% | |
| AGATGTTGACAATGGCCTGA+AGG | + | chr8_2:72093122-72093141 | None:intergenic | 45.0% | |
| TTCAGGCCATTGTCAACATC+TGG | - | chr8_2:72093121-72093140 | Msa1267010:intron | 45.0% | |
| TGGCAAACTGAGTTGTACCA+GGG | + | chr8_2:72093162-72093181 | None:intergenic | 45.0% | |
| ATGGCAAACTGAGTTGTACC+AGG | + | chr8_2:72093163-72093182 | None:intergenic | 45.0% | |
| CAGTTTGCCATCCTCTACAA+TGG | - | chr8_2:72093172-72093191 | Msa1267010:intron | 45.0% | |
| CATGCTTCCATTGTAGAGGA+TGG | + | chr8_2:72093182-72093201 | None:intergenic | 45.0% | |
| CACACATGCTTCCATTGTAG+AGG | + | chr8_2:72093186-72093205 | None:intergenic | 45.0% | |
| GTTTCCTTGTGGAGAAGAAG+GGG | + | chr8_2:72093409-72093428 | None:intergenic | 45.0% | |
| GAGTTTCCTTGTGGAGAAGA+AGG | + | chr8_2:72093411-72093430 | None:intergenic | 45.0% | |
| AGCAGGAAAACCAACTGATG+GGG | + | chr8_2:72093451-72093470 | None:intergenic | 45.0% | |
| CAGCAGGAAAACCAACTGAT+GGG | + | chr8_2:72093452-72093471 | None:intergenic | 45.0% | |
| CTGAGAAGAGTTCCATTTGC+AGG | - | chr8_2:72093472-72093491 | Msa1267010:intron | 45.0% | |
| AGTTCCATTTGCAGGATGCA+AGG | - | chr8_2:72093480-72093499 | Msa1267010:intron | 45.0% | |
| CCTCAAGTGGCATCATTACT+GGG | + | chr8_2:72094078-72094097 | None:intergenic | 45.0% | |
| ! | CCAGTAATGATGCCACTTGA+GGG | - | chr8_2:72094076-72094095 | Msa1267010:intron | 45.0% |
| GAGTACTATTTGCCCTCAAG+TGG | + | chr8_2:72094091-72094110 | None:intergenic | 45.0% | |
| GACATGAATGCACATGCTAC+TGG | + | chr8_2:72094134-72094153 | None:intergenic | 45.0% | |
| !! | ATAAAAAAAAAAAAAAAAGT+AGG | + | chr8_2:72092523-72092542 | None:intergenic | 5.0% |
| ATGTCTCAGTTGCAGAGGAG+AGG | - | chr8_2:72091531-72091550 | Msa1267010:three_prime_UTR | 50.0% | |
| TGTCTCAGTTGCAGAGGAGA+GGG | - | chr8_2:72091532-72091551 | Msa1267010:three_prime_UTR | 50.0% | |
| TCTGCTAGCAACAGCTGTCT+TGG | + | chr8_2:72092280-72092299 | None:intergenic | 50.0% | |
| ! | TAGGAGGTCTGGGATTCGAA+TGG | + | chr8_2:72092717-72092736 | None:intergenic | 50.0% |
| GGACTAAATGCAATGACCCC+TGG | - | chr8_2:72093142-72093161 | Msa1267010:intron | 50.0% | |
| GGCAAACTGAGTTGTACCAG+GGG | + | chr8_2:72093161-72093180 | None:intergenic | 50.0% | |
| AAACCAACTGATGGGGGAGA+AGG | + | chr8_2:72093444-72093463 | None:intergenic | 50.0% | |
| GCAGGAAAACCAACTGATGG+GGG | + | chr8_2:72093450-72093469 | None:intergenic | 50.0% | |
| GCAGCAGGAAAACCAACTGA+TGG | + | chr8_2:72093453-72093472 | None:intergenic | 50.0% | |
| ATGGAACTCTTCTCAGCAGC+AGG | + | chr8_2:72093468-72093487 | None:intergenic | 50.0% | |
| AGCACCTTGCATCCTGCAAA+TGG | + | chr8_2:72093487-72093506 | None:intergenic | 50.0% | |
| AGTGACTGTCTGCGTGCTAA+TGG | + | chr8_2:72093847-72093866 | None:intergenic | 50.0% | |
| CACGCAGACAGTCACTTCAA+AGG | - | chr8_2:72093851-72093870 | Msa1267010:intron | 50.0% | |
| ! | CCCAGTAATGATGCCACTTG+AGG | - | chr8_2:72094075-72094094 | Msa1267010:intron | 50.0% |
| CCCTCAAGTGGCATCATTAC+TGG | + | chr8_2:72094079-72094098 | None:intergenic | 50.0% | |
| GTGATCAGACAGTCCGGATG+TGG | + | chr8_2:72092843-72092862 | None:intergenic | 55.0% | |
| GTGGTTGACACGCAGTCACA+AGG | - | chr8_2:72092967-72092986 | Msa1267010:intron | 55.0% | |
| CAATGGCCTGAAGGGGAAAG+AGG | + | chr8_2:72093113-72093132 | None:intergenic | 55.0% | |
| TGGAGAAGAAGGGGTGGTAC+TGG | + | chr8_2:72093400-72093419 | None:intergenic | 55.0% | |
| ACCACCCCTTCTTCTCCACA+AGG | - | chr8_2:72093402-72093421 | Msa1267010:intron | 55.0% | |
| TCCTTGTGGAGAAGAAGGGG+TGG | + | chr8_2:72093406-72093425 | None:intergenic | 55.0% | |
| TTGCCTTCTCCCCCATCAGT+TGG | - | chr8_2:72093438-72093457 | Msa1267010:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 72091516 | 72094495 | 72091516 | ID=Msa1267010;Name=Msa1267010 |
| chr8_2 | mRNA | 72091516 | 72094495 | 72091516 | ID=Msa1267010-mRNA-1;Parent=Msa1267010;Name=Msa1267010-mRNA-1;_AED=0.13;_eAED=0.13;_QI=187|1|1|1|1|1|5|390|179 |
| chr8_2 | exon | 72091516 | 72092005 | 72091516 | ID=Msa1267010-mRNA-1:exon:24334;Parent=Msa1267010-mRNA-1 |
| chr8_2 | exon | 72092115 | 72092172 | 72092115 | ID=Msa1267010-mRNA-1:exon:24333;Parent=Msa1267010-mRNA-1 |
| chr8_2 | exon | 72092510 | 72092699 | 72092510 | ID=Msa1267010-mRNA-1:exon:24332;Parent=Msa1267010-mRNA-1 |
| chr8_2 | exon | 72092780 | 72092885 | 72092780 | ID=Msa1267010-mRNA-1:exon:24331;Parent=Msa1267010-mRNA-1 |
| chr8_2 | exon | 72094223 | 72094495 | 72094223 | ID=Msa1267010-mRNA-1:exon:24330;Parent=Msa1267010-mRNA-1 |
| chr8_2 | five_prime_UTR | 72094309 | 72094495 | 72094309 | ID=Msa1267010-mRNA-1:five_prime_utr;Parent=Msa1267010-mRNA-1 |
| chr8_2 | CDS | 72094223 | 72094308 | 72094223 | ID=Msa1267010-mRNA-1:cds;Parent=Msa1267010-mRNA-1 |
| chr8_2 | CDS | 72092780 | 72092885 | 72092780 | ID=Msa1267010-mRNA-1:cds;Parent=Msa1267010-mRNA-1 |
| chr8_2 | CDS | 72092510 | 72092699 | 72092510 | ID=Msa1267010-mRNA-1:cds;Parent=Msa1267010-mRNA-1 |
| chr8_2 | CDS | 72092115 | 72092172 | 72092115 | ID=Msa1267010-mRNA-1:cds;Parent=Msa1267010-mRNA-1 |
| chr8_2 | CDS | 72091906 | 72092005 | 72091906 | ID=Msa1267010-mRNA-1:cds;Parent=Msa1267010-mRNA-1 |
| chr8_2 | three_prime_UTR | 72091516 | 72091905 | 72091516 | ID=Msa1267010-mRNA-1:three_prime_utr;Parent=Msa1267010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
