Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139390 | sp|Q9XF92|BRH1_ARATH | 32.955 | 88 | 35 | 3 | 9 | 96 | 76 | 139 | 1.04e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139390 | G7JR49 | 67.033 | 91 | 27 | 1 | 6 | 96 | 43 | 130 | 1.12e-34 | 125 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0139390 | Msa0628590 | 0.817723 | 2.844339e-52 | -8.615850e-47 |
| Msa0139390 | Msa1267030 | 0.861431 | 1.031168e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139390 | MtrunA17_Chr4g0069751 | 67.033 | 91 | 27 | 1 | 6 | 96 | 43 | 130 | 2.16e-38 | 125 |
| Msa0139390 | MtrunA17_Chr4g0069761 | 83.824 | 68 | 11 | 0 | 29 | 96 | 5 | 72 | 3.89e-38 | 123 |
| Msa0139390 | MtrunA17_Chr8g0387291 | 44.444 | 54 | 24 | 2 | 43 | 96 | 84 | 131 | 1.45e-12 | 59.7 |
| Msa0139390 | MtrunA17_Chr5g0397351 | 45.283 | 53 | 23 | 2 | 43 | 95 | 79 | 125 | 2.62e-12 | 58.5 |
| Msa0139390 | MtrunA17_Chr1g0191601 | 35.632 | 87 | 32 | 3 | 9 | 95 | 108 | 170 | 7.37e-12 | 59.7 |
| Msa0139390 | MtrunA17_Chr3g0120681 | 45.614 | 57 | 25 | 1 | 40 | 96 | 94 | 144 | 7.74e-12 | 57.8 |
| Msa0139390 | MtrunA17_Chr2g0301871 | 49.020 | 51 | 19 | 1 | 45 | 95 | 83 | 126 | 1.24e-11 | 58.9 |
| Msa0139390 | MtrunA17_Chr7g0248101 | 43.137 | 51 | 23 | 1 | 45 | 95 | 90 | 134 | 1.46e-11 | 57.4 |
| Msa0139390 | MtrunA17_Chr5g0426881 | 37.333 | 75 | 27 | 2 | 21 | 95 | 132 | 186 | 1.92e-11 | 58.5 |
| Msa0139390 | MtrunA17_Chr3g0132491 | 45.098 | 51 | 21 | 2 | 45 | 95 | 136 | 179 | 3.21e-11 | 57.8 |
| Msa0139390 | MtrunA17_Chr7g0273051 | 35.632 | 87 | 32 | 3 | 9 | 95 | 101 | 163 | 3.29e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139390 | AT3G43430.1 | 51.389 | 72 | 30 | 3 | 29 | 96 | 66 | 136 | 7.52e-19 | 76.6 |
| Msa0139390 | AT5G20885.1 | 50.667 | 75 | 28 | 3 | 31 | 96 | 67 | 141 | 1.40e-17 | 73.6 |
| Msa0139390 | AT5G41400.1 | 45.455 | 55 | 25 | 2 | 42 | 96 | 102 | 151 | 5.70e-13 | 61.6 |
| Msa0139390 | AT3G61460.1 | 32.955 | 88 | 35 | 3 | 9 | 96 | 76 | 139 | 1.06e-12 | 60.5 |
| Msa0139390 | AT2G01150.1 | 53.846 | 52 | 17 | 2 | 45 | 96 | 74 | 118 | 1.40e-12 | 59.7 |
| Msa0139390 | AT2G01150.3 | 53.846 | 52 | 17 | 2 | 45 | 96 | 100 | 144 | 1.91e-12 | 60.1 |
| Msa0139390 | AT2G01150.2 | 53.846 | 52 | 17 | 2 | 45 | 96 | 123 | 167 | 2.59e-12 | 60.1 |
| Msa0139390 | AT3G05200.1 | 48.148 | 54 | 21 | 1 | 42 | 95 | 125 | 171 | 1.07e-11 | 59.7 |
| Msa0139390 | AT1G63840.1 | 43.548 | 62 | 29 | 3 | 34 | 95 | 79 | 134 | 1.26e-11 | 57.8 |
| Msa0139390 | AT3G60220.1 | 50.000 | 52 | 19 | 1 | 45 | 96 | 117 | 161 | 1.27e-11 | 59.3 |
| Msa0139390 | AT5G43200.1 | 47.368 | 57 | 24 | 1 | 40 | 96 | 151 | 201 | 5.33e-11 | 56.6 |
| Msa0139390 | AT2G42360.1 | 31.000 | 100 | 56 | 3 | 2 | 95 | 59 | 151 | 5.50e-11 | 57.0 |
| Msa0139390 | AT2G28920.1 | 45.455 | 55 | 23 | 1 | 42 | 96 | 90 | 137 | 5.94e-11 | 55.5 |
Find 57 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACATGTGTCTTCTGTTTC+TGG | 0.130755 | 1_3:-73075523 | None:intergenic |
| TTAACTAAACCAAAGTTATA+TGG | 0.204982 | 1_3:-73072609 | None:intergenic |
| TTTGAGATTATGAGAGAAAA+AGG | 0.211700 | 1_3:-73070967 | None:intergenic |
| GACATTGCTCTCTTATTTGC+AGG | 0.232207 | 1_3:+73072584 | Msa0139390:five_prime_UTR |
| TGCCATGAATAGAGAACTTT+TGG | 0.267971 | 1_3:-73074081 | None:intergenic |
| TTCAGATCAACGTTCTTCTA+TGG | 0.273926 | 1_3:+73071358 | Msa0139390:intron |
| TTGTTTGAACAAGCTGAAAA+TGG | 0.301105 | 1_3:+73075549 | Msa0139390:CDS |
| TACCAAAAGTTCTCTATTCA+TGG | 0.349977 | 1_3:+73074079 | Msa0139390:CDS |
| CATGGCAAAGACCTCATAAT+TGG | 0.358933 | 1_3:+73074097 | Msa0139390:CDS |
| TAACTAAACCAAAGTTATAT+GGG | 0.371576 | 1_3:-73072608 | None:intergenic |
| TGTTTATGTTTATGTTTATG+AGG | 0.374300 | 1_3:-73071060 | None:intergenic |
| CTCTACAAAGTGGACAAGTT+TGG | 0.375846 | 1_3:-73075669 | None:intergenic |
| TTGCAGTTAGTGTGAGATAG+TGG | 0.386743 | 1_3:-73070941 | None:intergenic |
| TGAGGAAAGGGGTTTGAAGA+AGG | 0.394504 | 1_3:-73071042 | None:intergenic |
| CGACGATGGGTTGAAATTTG+TGG | 0.398929 | 1_3:-73074054 | None:intergenic |
| TCATCATTTGTAGAAATTTG+AGG | 0.436127 | 1_3:+73071688 | Msa0139390:five_prime_UTR |
| TGTTTATGTTTATGAGGAAA+GGG | 0.439878 | 1_3:-73071054 | None:intergenic |
| CTTCTATGGATAGACAAATC+TGG | 0.440589 | 1_3:+73071372 | Msa0139390:five_prime_UTR |
| AATTTGACATTTACATTGGA+GGG | 0.447174 | 1_3:-73074139 | None:intergenic |
| TGGATAGACAAATCTGGCTA+TGG | 0.454461 | 1_3:+73071378 | Msa0139390:five_prime_UTR |
| AAACAATTCAAGGATGTTGA+TGG | 0.456425 | 1_3:+73072633 | Msa0139390:five_prime_UTR |
| TTGCAGGCCCCATATAACTT+TGG | 0.456758 | 1_3:+73072600 | Msa0139390:five_prime_UTR |
| GATGAAGGAACGCACAGAAC+AGG | 0.465124 | 1_3:+73071409 | Msa0139390:five_prime_UTR |
| TAGAGTGTATAAATTAAAGC+TGG | 0.465969 | 1_3:+73072529 | Msa0139390:intron |
| GAGAAGAAGAAACAATGAAA+GGG | 0.466623 | 1_3:-73071020 | None:intergenic |
| GGAGAAGAAGAAACAATGAA+AGG | 0.472386 | 1_3:-73071021 | None:intergenic |
| AAGTAAACGAAGAGAGAAGA+GGG | 0.480386 | 1_3:-73070990 | None:intergenic |
| TTTAGTTAAGAAACAATTCA+AGG | 0.484226 | 1_3:+73072623 | Msa0139390:five_prime_UTR |
| ATGTTTATGTTTATGAGGAA+AGG | 0.484789 | 1_3:-73071055 | None:intergenic |
| TCCACGGTACCTTTATGAAA+AGG | 0.499324 | 1_3:+73072688 | Msa0139390:exon |
| CAATTTGACATTTACATTGG+AGG | 0.499417 | 1_3:-73074140 | None:intergenic |
| ATGGATAATATGTGTGCTCT+AGG | 0.502690 | 1_3:+73072661 | Msa0139390:five_prime_UTR |
| GCAGCCTCAACATGTATGGA+TGG | 0.510149 | 1_3:+73071868 | Msa0139390:intron |
| TATTTGTGACAGGAATTCAA+TGG | 0.511842 | 1_3:+73071655 | Msa0139390:intron |
| CTGTGATCATGTGTTTCATA+AGG | 0.517073 | 1_3:+73075597 | Msa0139390:CDS |
| GGATAGACAAATCTGGCTAT+GGG | 0.538535 | 1_3:+73071379 | Msa0139390:five_prime_UTR |
| TCAAATCTGGTGTTGTAGAT+CGG | 0.543928 | 1_3:-73071161 | None:intergenic |
| AAGGATGTTGATGGTACAGA+TGG | 0.544451 | 1_3:+73072642 | Msa0139390:five_prime_UTR |
| GCTATGGGAAAGAATGATGA+AGG | 0.551874 | 1_3:+73071394 | Msa0139390:five_prime_UTR |
| AAGAATCTCGACCAATTATG+AGG | 0.554517 | 1_3:-73074108 | None:intergenic |
| GTTTATGTTTATGAGGAAAG+GGG | 0.570140 | 1_3:-73071053 | None:intergenic |
| TTGCCCATCCATACATGTTG+AGG | 0.572671 | 1_3:-73071872 | None:intergenic |
| TGCAGTTAGTGTGAGATAGT+GGG | 0.577153 | 1_3:-73070940 | None:intergenic |
| TTACTTACTTAAGAGCATCA+AGG | 0.577531 | 1_3:-73071911 | None:intergenic |
| AAAGTAAACGAAGAGAGAAG+AGG | 0.579543 | 1_3:-73070991 | None:intergenic |
| CAGCCTCAACATGTATGGAT+GGG | 0.583106 | 1_3:+73071869 | Msa0139390:intron |
| ATAAGGAATGCATAGAGAAG+TGG | 0.586287 | 1_3:+73075614 | Msa0139390:CDS |
| AACTAAACCAAAGTTATATG+GGG | 0.603697 | 1_3:-73072607 | None:intergenic |
| CAAATAAGAGAGCAATGTCA+AGG | 0.610911 | 1_3:-73072580 | None:intergenic |
| TGTAGATCGGTGTTGTACAA+TGG | 0.627928 | 1_3:-73071148 | None:intergenic |
| ATAGAGAAGTGGTTGGAACA+TGG | 0.640834 | 1_3:+73075625 | Msa0139390:CDS |
| AATCAAGGAGCTCTACAAAG+TGG | 0.643144 | 1_3:-73075679 | None:intergenic |
| TGGGCAAATTAACATGTGGT+TGG | 0.646485 | 1_3:+73071888 | Msa0139390:five_prime_UTR |
| GGAATGCATAGAGAAGTGGT+TGG | 0.653546 | 1_3:+73075618 | Msa0139390:CDS |
| GTGTGCTCTAGGAATATCCA+CGG | 0.670350 | 1_3:+73072672 | Msa0139390:five_prime_UTR |
| ATAAAGAAGAATGAAGAACT+CGG | 0.678421 | 1_3:-73071102 | None:intergenic |
| TGGATGGGCAAATTAACATG+TGG | 0.763230 | 1_3:+73071884 | Msa0139390:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGATAGATAAAATATAT+TGG | - | chr1_3:73073270-73073289 | None:intergenic | 10.0% |
| !!! | TTTATTTTTGATCAGTTTTT+TGG | + | chr1_3:73071120-73071139 | Msa0139390:five_prime_UTR | 15.0% |
| !!! | CAAAAATACCTTTTAAAAAA+TGG | - | chr1_3:73071567-73071586 | None:intergenic | 15.0% |
| !! | AATTCTTTAAATGAATTCTA+TGG | + | chr1_3:73071965-73071984 | Msa0139390:intron | 15.0% |
| !! | ATTCTTTAAATGAATTCTAT+GGG | + | chr1_3:73071966-73071985 | Msa0139390:intron | 15.0% |
| !! | AATTGAATGTATCTAAAAAA+TGG | + | chr1_3:73072971-73072990 | Msa0139390:intron | 15.0% |
| !!! | TATATTTTATCTATCAATTG+TGG | + | chr1_3:73073271-73073290 | Msa0139390:intron | 15.0% |
| !!! | TATGACAATGTTTTTTTTAA+TGG | + | chr1_3:73074372-73074391 | Msa0139390:intron | 15.0% |
| !!! | CAATTATCTTCTAAAAAATT+CGG | + | chr1_3:73074513-73074532 | Msa0139390:intron | 15.0% |
| !! | AGTTAAAATATTTCTTTGTT+GGG | + | chr1_3:73075244-73075263 | Msa0139390:intron | 15.0% |
| !! | TGTTTATGTTTATGTTTATG+AGG | - | chr1_3:73071063-73071082 | None:intergenic | 20.0% |
| !! | CTAAAGATTGAAAAAATAGA+GGG | - | chr1_3:73071316-73071335 | None:intergenic | 20.0% |
| !! | AAAAAAACGAAATTTGGATT+TGG | - | chr1_3:73071452-73071471 | None:intergenic | 20.0% |
| !! | ATGAGTAAAAAAACGAAATT+TGG | - | chr1_3:73071458-73071477 | None:intergenic | 20.0% |
| !!! | TTTAAAAAATGGCTTTGTAA+TGG | - | chr1_3:73071556-73071575 | None:intergenic | 20.0% |
| !!! | TTACAAAGCCATTTTTTAAA+AGG | + | chr1_3:73071556-73071575 | Msa0139390:five_prime_UTR | 20.0% |
| !! | ACATTTAATGTTAGAACAAA+GGG | - | chr1_3:73071736-73071755 | None:intergenic | 20.0% |
| !!! | CTATATTAACATTTTTTAGC+TGG | - | chr1_3:73071823-73071842 | None:intergenic | 20.0% |
| !! | TTCTTTAAATGAATTCTATG+GGG | + | chr1_3:73071967-73071986 | Msa0139390:intron | 20.0% |
| !! | TGAAATTTGCAAACATTAAT+TGG | - | chr1_3:73072134-73072153 | None:intergenic | 20.0% |
| !!! | TTTTGAAAAAACTACACAAT+TGG | - | chr1_3:73072176-73072195 | None:intergenic | 20.0% |
| !! | TAACTAAACCAAAGTTATAT+GGG | - | chr1_3:73072611-73072630 | None:intergenic | 20.0% |
| !! | TTAACTAAACCAAAGTTATA+TGG | - | chr1_3:73072612-73072631 | None:intergenic | 20.0% |
| !! | TTTAGTTAAGAAACAATTCA+AGG | + | chr1_3:73072623-73072642 | Msa0139390:five_prime_UTR | 20.0% |
| !! | TAATGACTAAAAGATAGAAA+AGG | - | chr1_3:73072718-73072737 | None:intergenic | 20.0% |
| !! | AATTGAATGTATCTAAAAAG+TGG | - | chr1_3:73072910-73072929 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTATATTAGTGAT+CGG | + | chr1_3:73072995-73073014 | Msa0139390:intron | 20.0% |
| !!! | ATTTTTATATTCCTCAAACA+CGG | + | chr1_3:73073105-73073124 | Msa0139390:intron | 20.0% |
| !!! | TTTTCATCATTTCTATATGA+TGG | + | chr1_3:73073775-73073794 | Msa0139390:intron | 20.0% |
| !! | TTTCATCATTTCTATATGAT+GGG | + | chr1_3:73073776-73073795 | Msa0139390:intron | 20.0% |
| !! | AAACATAGTAATACAATTGA+TGG | - | chr1_3:73073814-73073833 | None:intergenic | 20.0% |
| !! | ACAAATATAATCAATAGATG+TGG | + | chr1_3:73073860-73073879 | Msa0139390:intron | 20.0% |
| !! | ATTGTAATAAAAGAGGAAAT+AGG | - | chr1_3:73074026-73074045 | None:intergenic | 20.0% |
| !! | TTTCAATTTGACATTTACAT+TGG | - | chr1_3:73074146-73074165 | None:intergenic | 20.0% |
| !! | CATTGAAAAATATTACAACA+CGG | - | chr1_3:73074306-73074325 | None:intergenic | 20.0% |
| !! | TATAAAGATAGGAAAATGAT+AGG | + | chr1_3:73074684-73074703 | Msa0139390:intron | 20.0% |
| !! | CCATAAAAAATATATCTTAC+AGG | - | chr1_3:73075210-73075229 | None:intergenic | 20.0% |
| !!! | CCTGTAAGATATATTTTTTA+TGG | + | chr1_3:73075207-73075226 | Msa0139390:intron | 20.0% |
| !! | GAGTTAAAATATTTCTTTGT+TGG | + | chr1_3:73075243-73075262 | Msa0139390:intron | 20.0% |
| !! | TTTGAGATTATGAGAGAAAA+AGG | - | chr1_3:73070970-73070989 | None:intergenic | 25.0% |
| ! | TGTTTATGTTTATGAGGAAA+GGG | - | chr1_3:73071057-73071076 | None:intergenic | 25.0% |
| ! | ATGTTTATGTTTATGAGGAA+AGG | - | chr1_3:73071058-73071077 | None:intergenic | 25.0% |
| ! | ATAAAGAAGAATGAAGAACT+CGG | - | chr1_3:73071105-73071124 | None:intergenic | 25.0% |
| !!! | AACACCAGATTTGATTTTTA+AGG | + | chr1_3:73071170-73071189 | Msa0139390:five_prime_UTR | 25.0% |
| !!! | ACACCAGATTTGATTTTTAA+GGG | + | chr1_3:73071171-73071190 | Msa0139390:five_prime_UTR | 25.0% |
| ! | TTACCCTTAAAAATCAAATC+TGG | - | chr1_3:73071177-73071196 | None:intergenic | 25.0% |
| ! | GCTAAAGATTGAAAAAATAG+AGG | - | chr1_3:73071317-73071336 | None:intergenic | 25.0% |
| ! | TCATCATTTGTAGAAATTTG+AGG | + | chr1_3:73071688-73071707 | Msa0139390:five_prime_UTR | 25.0% |
| ! | CACATTTAATGTTAGAACAA+AGG | - | chr1_3:73071737-73071756 | None:intergenic | 25.0% |
| ! | AACAATGAAGCAACTAAAAA+AGG | + | chr1_3:73071771-73071790 | Msa0139390:intron | 25.0% |
| ! | TAAAAAAGGATTATAGCTAG+AGG | + | chr1_3:73071785-73071804 | Msa0139390:intron | 25.0% |
| !!! | TTTTGGAATAAGTTCATACA+AGG | + | chr1_3:73071997-73072016 | Msa0139390:intron | 25.0% |
| ! | AATTTGCAAACATTAATTGG+TGG | - | chr1_3:73072131-73072150 | None:intergenic | 25.0% |
| ! | AGTTGTTTAATCTGAATGTT+GGG | + | chr1_3:73072493-73072512 | Msa0139390:intron | 25.0% |
| ! | TAGAGTGTATAAATTAAAGC+TGG | + | chr1_3:73072529-73072548 | Msa0139390:intron | 25.0% |
| ! | AACTAAACCAAAGTTATATG+GGG | - | chr1_3:73072610-73072629 | None:intergenic | 25.0% |
| !! | GTTTGTTTACGTAATTTTCA+AGG | - | chr1_3:73072764-73072783 | None:intergenic | 25.0% |
| ! | ATAAATGAGCAATCACAAAA+TGG | - | chr1_3:73072851-73072870 | None:intergenic | 25.0% |
| !! | TTTTTGCTTAAATTAGTGAC+CGG | - | chr1_3:73072886-73072905 | None:intergenic | 25.0% |
| !! | TTTTTATATTCCTCAAACAC+GGG | + | chr1_3:73073106-73073125 | Msa0139390:intron | 25.0% |
| ! | GGAGGTTATATGTATTTAAT+TGG | + | chr1_3:73073127-73073146 | Msa0139390:intron | 25.0% |
| ! | ATCAAATACCTATAGTTTGA+GGG | - | chr1_3:73073170-73073189 | None:intergenic | 25.0% |
| ! | AATCAAATACCTATAGTTTG+AGG | - | chr1_3:73073171-73073190 | None:intergenic | 25.0% |
| ! | TATGATATACACACACATAT+TGG | + | chr1_3:73073227-73073246 | Msa0139390:intron | 25.0% |
| ! | TTTATCTATCAATTGTGGTA+AGG | + | chr1_3:73073276-73073295 | Msa0139390:intron | 25.0% |
| !! | AATTGTGATAACGAAAAATG+AGG | + | chr1_3:73073362-73073381 | Msa0139390:intron | 25.0% |
| ! | GATTTGTCAAGAAAAATAGT+TGG | + | chr1_3:73073514-73073533 | Msa0139390:intron | 25.0% |
| !!! | ACAATTTGTTCTAAGATGTT+TGG | + | chr1_3:73073549-73073568 | Msa0139390:intron | 25.0% |
| !! | ATAATTTGCATCTTTACTTG+AGG | + | chr1_3:73073915-73073934 | Msa0139390:intron | 25.0% |
| !!! | ATAGGTTGGTTTGTATATAT+TGG | - | chr1_3:73074008-73074027 | None:intergenic | 25.0% |
| ! | TAATAAAAGAGGAAATAGGT+TGG | - | chr1_3:73074022-73074041 | None:intergenic | 25.0% |
| !! | TCCTCTTTTATTACAATAAC+AGG | + | chr1_3:73074029-73074048 | Msa0139390:intron | 25.0% |
| !! | CCTCTTTTATTACAATAACA+GGG | + | chr1_3:73074030-73074049 | Msa0139390:intron | 25.0% |
| ! | AATTTGACATTTACATTGGA+GGG | - | chr1_3:73074142-73074161 | None:intergenic | 25.0% |
| !!! | ACATTGAGTTGATCATAAAA+AGG | - | chr1_3:73074235-73074254 | None:intergenic | 25.0% |
| ! | TTATTACATGTGGTTAAACA+GGG | + | chr1_3:73074466-73074485 | Msa0139390:intron | 25.0% |
| !! | TTATCTTCTAAAAAATTCGG+AGG | + | chr1_3:73074516-73074535 | Msa0139390:intron | 25.0% |
| !! | TTTTCTCATCAGAAATTAAG+AGG | + | chr1_3:73074944-73074963 | Msa0139390:intron | 25.0% |
| GAGAAGAAGAAACAATGAAA+GGG | - | chr1_3:73071023-73071042 | None:intergenic | 30.0% | |
| GTTTATGTTTATGAGGAAAG+GGG | - | chr1_3:73071056-73071075 | None:intergenic | 30.0% | |
| AATTCCTGTCACAAATAACT+TGG | - | chr1_3:73071652-73071671 | None:intergenic | 30.0% | |
| TATTTGTGACAGGAATTCAA+TGG | + | chr1_3:73071655-73071674 | Msa0139390:intron | 30.0% | |
| !! | TTACTTACTTAAGAGCATCA+AGG | - | chr1_3:73071914-73071933 | None:intergenic | 30.0% |
| TTTCATGATATAGCTGTTAG+AGG | + | chr1_3:73072149-73072168 | Msa0139390:intron | 30.0% | |
| !! | TTTGTTGTTGAAACTCACAT+AGG | - | chr1_3:73072213-73072232 | None:intergenic | 30.0% |
| ! | GAAACTTTTGATGCTAGAAA+AGG | - | chr1_3:73072323-73072342 | None:intergenic | 30.0% |
| GAGTTGTTTAATCTGAATGT+TGG | + | chr1_3:73072492-73072511 | Msa0139390:intron | 30.0% | |
| AAACAATTCAAGGATGTTGA+TGG | + | chr1_3:73072633-73072652 | Msa0139390:five_prime_UTR | 30.0% | |
| !!! | AAAGGAGTACCTTTTCATAA+AGG | - | chr1_3:73072700-73072719 | None:intergenic | 30.0% |
| CATTTATATTATACACCCTC+CGG | + | chr1_3:73072864-73072883 | Msa0139390:intron | 30.0% | |
| CTTTAAATCCCTCAAACTAT+AGG | + | chr1_3:73073159-73073178 | Msa0139390:intron | 30.0% | |
| TAACGAAAAATGAGGTTTGA+CGG | + | chr1_3:73073370-73073389 | Msa0139390:intron | 30.0% | |
| !! | CATTCAATTTTAACCAGAGA+GGG | - | chr1_3:73073477-73073496 | None:intergenic | 30.0% |
| !! | ACATTCAATTTTAACCAGAG+AGG | - | chr1_3:73073478-73073497 | None:intergenic | 30.0% |
| TACACATCAAATTGTTGAAG+TGG | + | chr1_3:73073651-73073670 | Msa0139390:intron | 30.0% | |
| ! | TGAAATTCTTTGATAGCAAG+TGG | + | chr1_3:73073706-73073725 | Msa0139390:intron | 30.0% |
| TATTGGAAAGATTCTCTTGA+TGG | - | chr1_3:73073991-73074010 | None:intergenic | 30.0% | |
| CCCTGTTATTGTAATAAAAG+AGG | - | chr1_3:73074033-73074052 | None:intergenic | 30.0% | |
| TACCAAAAGTTCTCTATTCA+TGG | + | chr1_3:73074079-73074098 | Msa0139390:CDS | 30.0% | |
| CAATTTGACATTTACATTGG+AGG | - | chr1_3:73074143-73074162 | None:intergenic | 30.0% | |
| TGCAATTGCTCCAAATAATA+TGG | + | chr1_3:73074270-73074289 | Msa0139390:intron | 30.0% | |
| AATTGCTCCAAATAATATGG+TGG | + | chr1_3:73074273-73074292 | Msa0139390:intron | 30.0% | |
| ATCTCATCCACCATATTATT+TGG | - | chr1_3:73074283-73074302 | None:intergenic | 30.0% | |
| TGTTAGATCCTTATTACATG+TGG | + | chr1_3:73074456-73074475 | Msa0139390:intron | 30.0% | |
| CTGTTTAACCACATGTAATA+AGG | - | chr1_3:73074467-73074486 | None:intergenic | 30.0% | |
| CTTATTACATGTGGTTAAAC+AGG | + | chr1_3:73074465-73074484 | Msa0139390:intron | 30.0% | |
| TATTACATGTGGTTAAACAG+GGG | + | chr1_3:73074467-73074486 | Msa0139390:intron | 30.0% | |
| ACGTGATTATTAAATGTGTG+AGG | + | chr1_3:73074657-73074676 | Msa0139390:intron | 30.0% | |
| TGTGAGGACTTTATAAAGAT+AGG | + | chr1_3:73074673-73074692 | Msa0139390:intron | 30.0% | |
| ! | AACTTAAAAGAGTGATAGTG+AGG | - | chr1_3:73074776-73074795 | None:intergenic | 30.0% |
| CAAAACATGGGAAAATACTT+GGG | + | chr1_3:73075007-73075026 | Msa0139390:intron | 30.0% | |
| GTAGCTCAGATTTAATATCA+CGG | + | chr1_3:73075143-73075162 | Msa0139390:intron | 30.0% | |
| TTGTTTGAACAAGCTGAAAA+TGG | + | chr1_3:73075549-73075568 | Msa0139390:CDS | 30.0% | |
| AAGTAAACGAAGAGAGAAGA+GGG | - | chr1_3:73070993-73071012 | None:intergenic | 35.0% | |
| AAAGTAAACGAAGAGAGAAG+AGG | - | chr1_3:73070994-73071013 | None:intergenic | 35.0% | |
| GGAGAAGAAGAAACAATGAA+AGG | - | chr1_3:73071024-73071043 | None:intergenic | 35.0% | |
| !! | TCAAATCTGGTGTTGTAGAT+CGG | - | chr1_3:73071164-73071183 | None:intergenic | 35.0% |
| TTCAGATCAACGTTCTTCTA+TGG | + | chr1_3:73071358-73071377 | Msa0139390:intron | 35.0% | |
| CTTCTATGGATAGACAAATC+TGG | + | chr1_3:73071372-73071391 | Msa0139390:five_prime_UTR | 35.0% | |
| !!! | GGCTTTGTAATGGATTTTGT+TGG | - | chr1_3:73071546-73071565 | None:intergenic | 35.0% |
| TTAGCCAAGTTATTTGTGAC+AGG | + | chr1_3:73071645-73071664 | Msa0139390:intron | 35.0% | |
| !!! | TTTTTAGCTGGCATAAACCA+AGG | - | chr1_3:73071811-73071830 | None:intergenic | 35.0% |
| ! | TTCTATGGGGCTTAAGTTTT+TGG | + | chr1_3:73071980-73071999 | Msa0139390:intron | 35.0% |
| CTCTAGATCCTAATTGAATG+AGG | + | chr1_3:73072288-73072307 | Msa0139390:intron | 35.0% | |
| !! | GACAAGAAACCATTGGTTTA+TGG | + | chr1_3:73072405-73072424 | Msa0139390:intron | 35.0% |
| !! | ACCATTGGTTTATGGCTTAA+TGG | + | chr1_3:73072413-73072432 | Msa0139390:intron | 35.0% |
| TCCATTAAGCCATAAACCAA+TGG | - | chr1_3:73072417-73072436 | None:intergenic | 35.0% | |
| CAAATAAGAGAGCAATGTCA+AGG | - | chr1_3:73072583-73072602 | None:intergenic | 35.0% | |
| ATGGATAATATGTGTGCTCT+AGG | + | chr1_3:73072661-73072680 | Msa0139390:five_prime_UTR | 35.0% | |
| ! | AAAACATCGCAGGTATTGTT+TGG | - | chr1_3:73072821-73072840 | None:intergenic | 35.0% |
| AACGAAAAATGAGGTTTGAC+GGG | + | chr1_3:73073371-73073390 | Msa0139390:intron | 35.0% | |
| ! | GCTGCTATTGTTGCTTATTA+AGG | + | chr1_3:73073403-73073422 | Msa0139390:intron | 35.0% |
| TTCCAATTCCAAATTCTTCC+TGG | - | chr1_3:73073432-73073451 | None:intergenic | 35.0% | |
| AATATCAATTTCTCCCTCTC+TGG | + | chr1_3:73073461-73073480 | Msa0139390:intron | 35.0% | |
| TCAAACATCATAGTCAGCAT+AGG | + | chr1_3:73073603-73073622 | Msa0139390:intron | 35.0% | |
| CAAACATCATAGTCAGCATA+GGG | + | chr1_3:73073604-73073623 | Msa0139390:intron | 35.0% | |
| AAACATCATAGTCAGCATAG+GGG | + | chr1_3:73073605-73073624 | Msa0139390:intron | 35.0% | |
| AAATTGTTGAAGTGGACCTT+TGG | + | chr1_3:73073659-73073678 | Msa0139390:intron | 35.0% | |
| ACTATGTTTATCCTCACTGT+TGG | + | chr1_3:73073825-73073844 | Msa0139390:intron | 35.0% | |
| TTTCAACTTAACCAACAGTG+AGG | - | chr1_3:73073839-73073858 | None:intergenic | 35.0% | |
| ! | AACTTTTGGTATTCGACGAT+GGG | - | chr1_3:73074070-73074089 | None:intergenic | 35.0% |
| ! | TGCCATGAATAGAGAACTTT+TGG | - | chr1_3:73074084-73074103 | None:intergenic | 35.0% |
| AAGAATCTCGACCAATTATG+AGG | - | chr1_3:73074111-73074130 | None:intergenic | 35.0% | |
| TAGAGAAGACATGAATAAGC+TGG | - | chr1_3:73074179-73074198 | None:intergenic | 35.0% | |
| ACATTTGTGTGGATGTCAAA+AGG | + | chr1_3:73074828-73074847 | Msa0139390:intron | 35.0% | |
| CATTTGTGTGGATGTCAAAA+GGG | + | chr1_3:73074829-73074848 | Msa0139390:intron | 35.0% | |
| GTAGTTAAGCAAGAATCAAG+AGG | + | chr1_3:73074902-73074921 | Msa0139390:intron | 35.0% | |
| ! | CCAAGTATTTTCCCATGTTT+TGG | - | chr1_3:73075009-73075028 | None:intergenic | 35.0% |
| CCAAAACATGGGAAAATACT+TGG | + | chr1_3:73075006-73075025 | Msa0139390:intron | 35.0% | |
| ACAACACATACAACACATCT+GGG | - | chr1_3:73075090-73075109 | None:intergenic | 35.0% | |
| ATTTCTCCAAAACTCGTCAA+CGG | - | chr1_3:73075490-73075509 | None:intergenic | 35.0% | |
| CTGTGATCATGTGTTTCATA+AGG | + | chr1_3:73075597-73075616 | Msa0139390:CDS | 35.0% | |
| ATAAGGAATGCATAGAGAAG+TGG | + | chr1_3:73075614-73075633 | Msa0139390:CDS | 35.0% | |
| !! | TGTAGATCGGTGTTGTACAA+TGG | - | chr1_3:73071151-73071170 | None:intergenic | 40.0% |
| GAGAGATAAGCTATAACCAG+TGG | - | chr1_3:73071294-73071313 | None:intergenic | 40.0% | |
| TGGATAGACAAATCTGGCTA+TGG | + | chr1_3:73071378-73071397 | Msa0139390:five_prime_UTR | 40.0% | |
| GGATAGACAAATCTGGCTAT+GGG | + | chr1_3:73071379-73071398 | Msa0139390:five_prime_UTR | 40.0% | |
| GCTATGGGAAAGAATGATGA+AGG | + | chr1_3:73071394-73071413 | Msa0139390:five_prime_UTR | 40.0% | |
| ACAGAACAGGTATCAGAAGT+AGG | + | chr1_3:73071422-73071441 | Msa0139390:intron | 40.0% | |
| ! | TTTTGCAGCCTCAACATGTA+TGG | + | chr1_3:73071864-73071883 | Msa0139390:intron | 40.0% |
| TGGATGGGCAAATTAACATG+TGG | + | chr1_3:73071884-73071903 | Msa0139390:five_prime_UTR | 40.0% | |
| TGGGCAAATTAACATGTGGT+TGG | + | chr1_3:73071888-73071907 | Msa0139390:five_prime_UTR | 40.0% | |
| CTGAGAGAAATGAAGACAGT+GGG | - | chr1_3:73072087-73072106 | None:intergenic | 40.0% | |
| ACTGAGAGAAATGAAGACAG+TGG | - | chr1_3:73072088-73072107 | None:intergenic | 40.0% | |
| GATCCTAATTGAATGAGGTC+AGG | + | chr1_3:73072293-73072312 | Msa0139390:intron | 40.0% | |
| TGACCTGACCTCATTCAATT+AGG | - | chr1_3:73072299-73072318 | None:intergenic | 40.0% | |
| CAATGGTTTCTTGTCATGCT+TGG | - | chr1_3:73072400-73072419 | None:intergenic | 40.0% | |
| CAAGCATGACAAGAAACCAT+TGG | + | chr1_3:73072398-73072417 | Msa0139390:intron | 40.0% | |
| !! | CTAGCATCAAAAGTGTCATG+TGG | + | chr1_3:73072454-73072473 | Msa0139390:intron | 40.0% |
| ! | GACATTGCTCTCTTATTTGC+AGG | + | chr1_3:73072584-73072603 | Msa0139390:five_prime_UTR | 40.0% |
| !! | AAGGATGTTGATGGTACAGA+TGG | + | chr1_3:73072642-73072661 | Msa0139390:five_prime_UTR | 40.0% |
| TCCACGGTACCTTTATGAAA+AGG | + | chr1_3:73072688-73072707 | Msa0139390:exon | 40.0% | |
| !!! | ACCTTTTCATAAAGGTACCG+TGG | - | chr1_3:73072692-73072711 | None:intergenic | 40.0% |
| TGGAAATGAGAAAACATCGC+AGG | - | chr1_3:73072831-73072850 | None:intergenic | 40.0% | |
| TGCTTAAATTAGTGACCGGA+GGG | - | chr1_3:73072882-73072901 | None:intergenic | 40.0% | |
| TTGCTTAAATTAGTGACCGG+AGG | - | chr1_3:73072883-73072902 | None:intergenic | 40.0% | |
| TTATATTCCTCAAACACGGG+AGG | + | chr1_3:73073109-73073128 | Msa0139390:intron | 40.0% | |
| ! | TGCCAGGAAGAATTTGGAAT+TGG | + | chr1_3:73073427-73073446 | Msa0139390:intron | 40.0% |
| CTAAGATGTTTGGTATGTGC+AGG | + | chr1_3:73073559-73073578 | Msa0139390:intron | 40.0% | |
| AGCATAGGGGACTTAATATG+CGG | + | chr1_3:73073618-73073637 | Msa0139390:intron | 40.0% | |
| ! | GAACTTTTGGTATTCGACGA+TGG | - | chr1_3:73074071-73074090 | None:intergenic | 40.0% |
| CATGGCAAAGACCTCATAAT+TGG | + | chr1_3:73074097-73074116 | Msa0139390:CDS | 40.0% | |
| ACTTTGTACCATTGCTGATG+TGG | + | chr1_3:73074728-73074747 | Msa0139390:intron | 40.0% | |
| TCAATGCACTCTCCAAAACA+TGG | + | chr1_3:73074994-73075013 | Msa0139390:intron | 40.0% | |
| CAATGCACTCTCCAAAACAT+GGG | + | chr1_3:73074995-73075014 | Msa0139390:intron | 40.0% | |
| AGTCACCGTCACATTAAATC+TGG | + | chr1_3:73075038-73075057 | Msa0139390:intron | 40.0% | |
| GTCACCGTCACATTAAATCT+GGG | + | chr1_3:73075039-73075058 | Msa0139390:intron | 40.0% | |
| ATTAAATCTGGGCCACACAA+AGG | + | chr1_3:73075050-73075069 | Msa0139390:intron | 40.0% | |
| ACACAAACAACACCTTTGTG+TGG | - | chr1_3:73075065-73075084 | None:intergenic | 40.0% | |
| !! | ACACAAAGGTGTTGTTTGTG+TGG | + | chr1_3:73075064-73075083 | Msa0139390:intron | 40.0% |
| CACAACACATACAACACATC+TGG | - | chr1_3:73075091-73075110 | None:intergenic | 40.0% | |
| GATGTGTTGTATGTGTTGTG+TGG | + | chr1_3:73075091-73075110 | Msa0139390:intron | 40.0% | |
| !!! | CATGTTTTTGGGAAGCACTT+GGG | - | chr1_3:73075182-73075201 | None:intergenic | 40.0% |
| CAAGTGCTTCCCAAAAACAT+GGG | + | chr1_3:73075181-73075200 | Msa0139390:intron | 40.0% | |
| AAGTGCTTCCCAAAAACATG+GGG | + | chr1_3:73075182-73075201 | Msa0139390:intron | 40.0% | |
| !! | CAAGAGTGTTGTTGTTGGTT+TGG | - | chr1_3:73075454-73075473 | None:intergenic | 40.0% |
| AACCAACAACAACACTCTTG+TGG | + | chr1_3:73075454-73075473 | Msa0139390:intron | 40.0% | |
| ! | ATGTTACCGTTGACGAGTTT+TGG | + | chr1_3:73075481-73075500 | Msa0139390:intron | 40.0% |
| !!! | GACGAGTTTTGGAGAAATCA+AGG | + | chr1_3:73075492-73075511 | Msa0139390:intron | 40.0% |
| ATAGAGAAGTGGTTGGAACA+TGG | + | chr1_3:73075625-73075644 | Msa0139390:CDS | 40.0% | |
| CTCTACAAAGTGGACAAGTT+TGG | - | chr1_3:73075672-73075691 | None:intergenic | 40.0% | |
| TGAGGAAAGGGGTTTGAAGA+AGG | - | chr1_3:73071045-73071064 | None:intergenic | 45.0% | |
| CTATAACCAGTGGAACACGA+TGG | - | chr1_3:73071284-73071303 | None:intergenic | 45.0% | |
| AACCACTCTCTTACTCTCTC+TGG | + | chr1_3:73071491-73071510 | Msa0139390:intron | 45.0% | |
| AACCAGAGAGAGTAAGAGAG+TGG | - | chr1_3:73071496-73071515 | None:intergenic | 45.0% | |
| !! | TCTCTGGTTTGTTGTTGCTG+TGG | + | chr1_3:73071507-73071526 | Msa0139390:intron | 45.0% |
| !! | GGTTTGTTGTTGCTGTGGTT+AGG | + | chr1_3:73071512-73071531 | Msa0139390:intron | 45.0% |
| AGGATTATAGCTAGAGGCCT+TGG | + | chr1_3:73071791-73071810 | Msa0139390:intron | 45.0% | |
| CAGCCTCAACATGTATGGAT+GGG | + | chr1_3:73071869-73071888 | Msa0139390:intron | 45.0% | |
| TTGCCCATCCATACATGTTG+AGG | - | chr1_3:73071875-73071894 | None:intergenic | 45.0% | |
| TTGCAGGCCCCATATAACTT+TGG | + | chr1_3:73072600-73072619 | Msa0139390:five_prime_UTR | 45.0% | |
| !! | GTGTGCTCTAGGAATATCCA+CGG | + | chr1_3:73072672-73072691 | Msa0139390:five_prime_UTR | 45.0% |
| CATATAACCTCCCGTGTTTG+AGG | - | chr1_3:73073119-73073138 | None:intergenic | 45.0% | |
| ! | TGTTGCTTATTAAGGCTGCC+AGG | + | chr1_3:73073411-73073430 | Msa0139390:intron | 45.0% |
| TAAGGCTGCCAGGAAGAATT+TGG | + | chr1_3:73073421-73073440 | Msa0139390:intron | 45.0% | |
| GTTTGGTATGTGCAGGTATG+TGG | + | chr1_3:73073566-73073585 | Msa0139390:intron | 45.0% | |
| CTACATGCTAAGCTGTCCAA+AGG | - | chr1_3:73073678-73073697 | None:intergenic | 45.0% | |
| TGAGTCTGCAGGGATAAAGT+AGG | - | chr1_3:73073968-73073987 | None:intergenic | 45.0% | |
| !! | CGACGATGGGTTGAAATTTG+TGG | - | chr1_3:73074057-73074076 | None:intergenic | 45.0% |
| TACCATTGCTGATGTGGCAA+GGG | + | chr1_3:73074734-73074753 | Msa0139390:intron | 45.0% | |
| CCACACAAATGTGTGACACA+TGG | - | chr1_3:73074820-73074839 | None:intergenic | 45.0% | |
| CCATGTGTCACACATTTGTG+TGG | + | chr1_3:73074817-73074836 | Msa0139390:intron | 45.0% | |
| TTGTGTGGATGTCAAAAGGG+TGG | + | chr1_3:73074832-73074851 | Msa0139390:intron | 45.0% | |
| GTGGCCCAGATTTAATGTGA+CGG | - | chr1_3:73075046-73075065 | None:intergenic | 45.0% | |
| CACATTGCCACACAACAACT+GGG | - | chr1_3:73075117-73075136 | None:intergenic | 45.0% | |
| ACACATTGCCACACAACAAC+TGG | - | chr1_3:73075118-73075137 | None:intergenic | 45.0% | |
| !!! | CCATGTTTTTGGGAAGCACT+TGG | - | chr1_3:73075183-73075202 | None:intergenic | 45.0% |
| CCAAGTGCTTCCCAAAAACA+TGG | + | chr1_3:73075180-73075199 | Msa0139390:intron | 45.0% | |
| AGTGCTTCCCAAAAACATGG+GGG | + | chr1_3:73075183-73075202 | Msa0139390:intron | 45.0% | |
| !! | GACCACAAGAGTGTTGTTGT+TGG | - | chr1_3:73075459-73075478 | None:intergenic | 45.0% |
| GCACATGTGTCTTCTGTTTC+TGG | - | chr1_3:73075526-73075545 | None:intergenic | 45.0% | |
| GGAATGCATAGAGAAGTGGT+TGG | + | chr1_3:73075618-73075637 | Msa0139390:CDS | 45.0% | |
| !!! | TATTAATTGTATTTTATATT+AGG | + | chr1_3:73075313-73075332 | Msa0139390:intron | 5.0% |
| ! | GTTGGTTCCAATCGGAGAGA+GGG | - | chr1_3:73071252-73071271 | None:intergenic | 50.0% |
| ! | AGTTGGTTCCAATCGGAGAG+AGG | - | chr1_3:73071253-73071272 | None:intergenic | 50.0% |
| TAACCAGTGGAACACGATGG+TGG | - | chr1_3:73071281-73071300 | None:intergenic | 50.0% | |
| GATGAAGGAACGCACAGAAC+AGG | + | chr1_3:73071409-73071428 | Msa0139390:five_prime_UTR | 50.0% | |
| GCAGCCTCAACATGTATGGA+TGG | + | chr1_3:73071868-73071887 | Msa0139390:intron | 50.0% | |
| !! | CTCTTGATGGTGAGTCTGCA+GGG | - | chr1_3:73073978-73073997 | None:intergenic | 50.0% |
| !! | TCTCTTGATGGTGAGTCTGC+AGG | - | chr1_3:73073979-73073998 | None:intergenic | 50.0% |
| GTACCATTGCTGATGTGGCA+AGG | + | chr1_3:73074733-73074752 | Msa0139390:intron | 50.0% | |
| TTCCCTTGCCACATCAGCAA+TGG | - | chr1_3:73074739-73074758 | None:intergenic | 50.0% | |
| GTGCTTCCCAAAAACATGGG+GGG | + | chr1_3:73075184-73075203 | Msa0139390:intron | 50.0% | |
| ! | TACAGGCCCCCCATGTTTTT+GGG | - | chr1_3:73075193-73075212 | None:intergenic | 50.0% |
| ! | TTACAGGCCCCCCATGTTTT+TGG | - | chr1_3:73075194-73075213 | None:intergenic | 50.0% |
| ATTTCTTCCCGTGCGTTGCA+CGG | + | chr1_3:73075392-73075411 | Msa0139390:intron | 50.0% | |
| ATTTACACCCGTGCAACGCA+CGG | - | chr1_3:73075403-73075422 | None:intergenic | 50.0% | |
| TATCCCTCCCTCTCTCCGAT+TGG | + | chr1_3:73071242-73071261 | Msa0139390:intron | 55.0% | |
| GTTCCAATCGGAGAGAGGGA+GGG | - | chr1_3:73071248-73071267 | None:intergenic | 55.0% | |
| CAGGTATGTGGCATGTGCGT+TGG | + | chr1_3:73073578-73073597 | Msa0139390:intron | 55.0% | |
| TGTGTGGCCCAGTTGTTGTG+TGG | + | chr1_3:73075107-73075126 | Msa0139390:intron | 55.0% | |
| TTTCTTCCCGTGCGTTGCAC+GGG | + | chr1_3:73075393-73075412 | Msa0139390:intron | 55.0% | |
| TTTACACCCGTGCAACGCAC+GGG | - | chr1_3:73075402-73075421 | None:intergenic | 55.0% | |
| GGTTCCAATCGGAGAGAGGG+AGG | - | chr1_3:73071249-73071268 | None:intergenic | 60.0% | |
| !! | GGCGGCGAGTTGGTTCCAAT+CGG | - | chr1_3:73071260-73071279 | None:intergenic | 60.0% |
| ! | CCAGTGGAACACGATGGTGG+CGG | - | chr1_3:73071278-73071297 | None:intergenic | 60.0% |
| !! | ACACGATGGTGGCGGCGAGT+TGG | - | chr1_3:73071270-73071289 | None:intergenic | 65.0% |
| CCGCCACCATCGTGTTCCAC+TGG | + | chr1_3:73071275-73071294 | Msa0139390:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 73070942 | 73075699 | 73070942 | ID=Msa0139390;Name=Msa0139390 |
| chr1_3 | mRNA | 73070942 | 73075699 | 73070942 | ID=Msa0139390-mRNA-1;Parent=Msa0139390;Name=Msa0139390-mRNA-1;_AED=0.34;_eAED=0.34;_QI=630|0.71|0.75|1|0.14|0.25|8|0|96 |
| chr1_3 | exon | 73070942 | 73071192 | 73070942 | ID=Msa0139390-mRNA-1:exon:25467;Parent=Msa0139390-mRNA-1 |
| chr1_3 | exon | 73071363 | 73071430 | 73071363 | ID=Msa0139390-mRNA-1:exon:25468;Parent=Msa0139390-mRNA-1 |
| chr1_3 | exon | 73071534 | 73071577 | 73071534 | ID=Msa0139390-mRNA-1:exon:25469;Parent=Msa0139390-mRNA-1 |
| chr1_3 | exon | 73071667 | 73071709 | 73071667 | ID=Msa0139390-mRNA-1:exon:25470;Parent=Msa0139390-mRNA-1 |
| chr1_3 | exon | 73071872 | 73071925 | 73071872 | ID=Msa0139390-mRNA-1:exon:25471;Parent=Msa0139390-mRNA-1 |
| chr1_3 | exon | 73072532 | 73072709 | 73072532 | ID=Msa0139390-mRNA-1:exon:25472;Parent=Msa0139390-mRNA-1 |
| chr1_3 | exon | 73074051 | 73074147 | 73074051 | ID=Msa0139390-mRNA-1:exon:25473;Parent=Msa0139390-mRNA-1 |
| chr1_3 | exon | 73075514 | 73075699 | 73075514 | ID=Msa0139390-mRNA-1:exon:25474;Parent=Msa0139390-mRNA-1 |
| chr1_3 | five_prime_UTR | 73070942 | 73071192 | 73070942 | ID=Msa0139390-mRNA-1:five_prime_utr;Parent=Msa0139390-mRNA-1 |
| chr1_3 | five_prime_UTR | 73071363 | 73071430 | 73071363 | ID=Msa0139390-mRNA-1:five_prime_utr;Parent=Msa0139390-mRNA-1 |
| chr1_3 | five_prime_UTR | 73071534 | 73071577 | 73071534 | ID=Msa0139390-mRNA-1:five_prime_utr;Parent=Msa0139390-mRNA-1 |
| chr1_3 | five_prime_UTR | 73071667 | 73071709 | 73071667 | ID=Msa0139390-mRNA-1:five_prime_utr;Parent=Msa0139390-mRNA-1 |
| chr1_3 | five_prime_UTR | 73071872 | 73071925 | 73071872 | ID=Msa0139390-mRNA-1:five_prime_utr;Parent=Msa0139390-mRNA-1 |
| chr1_3 | five_prime_UTR | 73072532 | 73072701 | 73072532 | ID=Msa0139390-mRNA-1:five_prime_utr;Parent=Msa0139390-mRNA-1 |
| chr1_3 | CDS | 73072702 | 73072709 | 73072702 | ID=Msa0139390-mRNA-1:cds;Parent=Msa0139390-mRNA-1 |
| chr1_3 | CDS | 73074051 | 73074147 | 73074051 | ID=Msa0139390-mRNA-1:cds;Parent=Msa0139390-mRNA-1 |
| chr1_3 | CDS | 73075514 | 73075699 | 73075514 | ID=Msa0139390-mRNA-1:cds;Parent=Msa0139390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
