Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142550 | AES64296.1 | 99.158 | 475 | 4 | 0 | 1 | 475 | 1 | 475 | 0.0 | 978 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142550 | sp|O24467|LE14B_PRUAR | 69.365 | 457 | 135 | 3 | 3 | 457 | 9 | 462 | 0.0 | 665 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142550 | G7IFM1 | 99.158 | 475 | 4 | 0 | 1 | 475 | 1 | 475 | 0.0 | 978 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0142550 | Msa0195590 | 0.852926 | 3.350459e-61 | -8.615850e-47 |
| Msa0142550 | Msa0277490 | 0.889342 | 2.640396e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142550 | MtrunA17_Chr2g0286731 | 98.938 | 471 | 5 | 0 | 1 | 471 | 1 | 471 | 0.0 | 969 |
| Msa0142550 | MtrunA17_Chr1g0196321 | 68.000 | 450 | 140 | 2 | 18 | 463 | 35 | 484 | 0.0 | 645 |
| Msa0142550 | MtrunA17_Chr7g0253861 | 24.818 | 274 | 134 | 5 | 210 | 444 | 100 | 340 | 2.63e-18 | 86.3 |
| Msa0142550 | MtrunA17_Chr4g0067151 | 26.613 | 248 | 160 | 6 | 208 | 443 | 78 | 315 | 3.27e-16 | 79.7 |
| Msa0142550 | MtrunA17_Chr3g0093681 | 32.540 | 126 | 81 | 1 | 211 | 336 | 443 | 564 | 2.86e-14 | 75.1 |
| Msa0142550 | MtrunA17_Chr1g0172501 | 32.540 | 126 | 81 | 1 | 211 | 336 | 443 | 564 | 8.85e-14 | 73.6 |
| Msa0142550 | MtrunA17_Chr1g0185501 | 25.301 | 249 | 158 | 7 | 210 | 443 | 71 | 306 | 1.09e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142550 | AT4G03020.1 | 71.525 | 446 | 120 | 3 | 32 | 474 | 52 | 493 | 0.0 | 668 |
| Msa0142550 | AT4G03020.2 | 71.525 | 446 | 120 | 3 | 32 | 474 | 52 | 493 | 0.0 | 668 |
| Msa0142550 | AT4G03020.3 | 71.525 | 446 | 120 | 3 | 32 | 474 | 52 | 493 | 0.0 | 668 |
| Msa0142550 | AT2G43770.1 | 25.912 | 274 | 131 | 6 | 210 | 444 | 98 | 338 | 9.04e-20 | 90.9 |
Find 123 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAAATTTCTTGCATATTT+AGG | 0.104439 | 1_4:+1488298 | None:intergenic |
| GATAATGATAATGATGAATT+TGG | 0.159616 | 1_4:-1489460 | Msa0142550:CDS |
| AATTGTCCACCGTAAGTTTC+TGG | 0.182078 | 1_4:+1490596 | None:intergenic |
| CTAAATATGCAAGAAATTTA+AGG | 0.217256 | 1_4:-1488297 | Msa0142550:CDS |
| GTGTGTGATGAATGAATTTA+AGG | 0.241607 | 1_4:+1491938 | None:intergenic |
| ACTCCAGTGGATCTTCTATT+TGG | 0.244163 | 1_4:+1486830 | None:intergenic |
| GGCCGTTATTTAATTTCTAA+TGG | 0.261281 | 1_4:-1488521 | Msa0142550:CDS |
| CTCTCCGGATACATATATTT+AGG | 0.300424 | 1_4:-1486760 | Msa0142550:three_prime_UTR |
| CCGATCCTGCATTGACAATA+TGG | 0.301448 | 1_4:+1490331 | None:intergenic |
| AAATAAGTGTAACAAACTTT+TGG | 0.307033 | 1_4:+1486667 | None:intergenic |
| TGCCAGCTGCAATCTCTTAA+AGG | 0.307367 | 1_4:+1486944 | None:intergenic |
| CTTGGGATGGTGACATTGTT+AGG | 0.316849 | 1_4:-1486892 | Msa0142550:CDS |
| TGTCCCATAGCTTGGTAGTT+TGG | 0.319852 | 1_4:+1488492 | None:intergenic |
| TCCACTGGAGTTCGTATTAG+AGG | 0.324570 | 1_4:-1486818 | Msa0142550:CDS |
| GCATTGACAATATGGATAAT+TGG | 0.329443 | 1_4:+1490339 | None:intergenic |
| TTAATCTAAGAATTTATGAT+AGG | 0.369737 | 1_4:+1486617 | None:intergenic |
| AACACAACACTCACAGTTGA+TGG | 0.372300 | 1_4:-1491908 | Msa0142550:five_prime_UTR |
| ATTGTTAGGTGGGAATTTCC+TGG | 0.376216 | 1_4:-1486878 | Msa0142550:CDS |
| TCTGGTCATCTCATATATTC+TGG | 0.377793 | 1_4:-1488890 | Msa0142550:CDS |
| AGTCGTGTTGTTCCTGGTAC+GGG | 0.382420 | 1_4:-1491225 | Msa0142550:CDS |
| ATCTTGATGGGGCATTTAGA+AGG | 0.389360 | 1_4:-1488572 | Msa0142550:CDS |
| AGGTGGGAATTTCCTGGAAA+TGG | 0.393643 | 1_4:-1486872 | Msa0142550:CDS |
| GTTATTTCTCACCATCATAT+AGG | 0.399373 | 1_4:-1488210 | Msa0142550:intron |
| GCAGGAGGTTGACCATTTCC+AGG | 0.414172 | 1_4:+1486860 | None:intergenic |
| CTACCAAGCTATGGGACATA+AGG | 0.419416 | 1_4:-1488487 | Msa0142550:CDS |
| GTCTGCTTTGCTGATGAATC+TGG | 0.420608 | 1_4:-1488908 | Msa0142550:CDS |
| TCAATATGTGTATATGATCT+TGG | 0.429420 | 1_4:-1489376 | Msa0142550:CDS |
| CTTCTATTTGGAGGAGGAGC+AGG | 0.433878 | 1_4:+1486842 | None:intergenic |
| ATAATGATAATGATGAATTT+GGG | 0.436292 | 1_4:-1489459 | Msa0142550:CDS |
| ACAACCAGCTGGCATCTTGA+TGG | 0.437455 | 1_4:-1488585 | Msa0142550:CDS |
| TAAACCTACAGTCTGGGCCT+TGG | 0.442950 | 1_4:-1488355 | Msa0142550:intron |
| TTCTCTTACACCAATAGAAA+AGG | 0.444191 | 1_4:-1486692 | Msa0142550:three_prime_UTR |
| AATTTGAGTCGTGTTGTTCC+TGG | 0.446775 | 1_4:-1491231 | Msa0142550:CDS |
| CTTACAAGATATTGTCGATC+AGG | 0.447419 | 1_4:+1490555 | None:intergenic |
| ATCGACAATCCAAGGACCTT+TGG | 0.448041 | 1_4:+1491089 | None:intergenic |
| TTCATTAATAGTCGCGGAGA+TGG | 0.448427 | 1_4:-1488542 | Msa0142550:CDS |
| GATATCAGCATTGGATAGAA+AGG | 0.448504 | 1_4:+1486920 | None:intergenic |
| TTCCATTAGAAATTAAATAA+CGG | 0.450455 | 1_4:+1488519 | None:intergenic |
| CCTCAGAATTCCTGCTCACC+TGG | 0.452156 | 1_4:-1489338 | Msa0142550:intron |
| GATGGGCGAGAGCTTGTGTC+TGG | 0.453921 | 1_4:-1489412 | Msa0142550:CDS |
| TTTGTACATATTTATCTCTC+CGG | 0.454546 | 1_4:-1486775 | Msa0142550:three_prime_UTR |
| ATTGAAACAGTGTTTGATGA+TGG | 0.457017 | 1_4:+1491968 | None:intergenic |
| GAGTCGTGTTGTTCCTGGTA+CGG | 0.457305 | 1_4:-1491226 | Msa0142550:CDS |
| ATTTGCCTACCAAAGGTCCT+TGG | 0.457941 | 1_4:-1491098 | Msa0142550:CDS |
| AGGCGTTGCTTTGCTGCAAA+AGG | 0.464029 | 1_4:-1488608 | Msa0142550:CDS |
| GCTACCTAAATATATGTATC+CGG | 0.471557 | 1_4:+1486756 | None:intergenic |
| CAACCAGCTGGCATCTTGAT+GGG | 0.472797 | 1_4:-1488584 | Msa0142550:CDS |
| CTTCCTTATGTCCCATAGCT+TGG | 0.483959 | 1_4:+1488484 | None:intergenic |
| GCATCCTCAGGACCAGTCAT+TGG | 0.489591 | 1_4:-1488275 | Msa0142550:CDS |
| TATATGATGTTGACAAGGAC+TGG | 0.492556 | 1_4:-1490641 | Msa0142550:CDS |
| CAATGCTGATATCTTCAGCT+TGG | 0.492574 | 1_4:-1486910 | Msa0142550:CDS |
| CACCTTTAAGAGATTGCAGC+TGG | 0.492653 | 1_4:-1486946 | Msa0142550:CDS |
| CCAGTGGATCTTCTATTTGG+AGG | 0.494643 | 1_4:+1486833 | None:intergenic |
| CAGTCATTGGCAACATATCA+AGG | 0.494910 | 1_4:-1488262 | Msa0142550:CDS |
| CTTGATATGTTGCCAATGAC+TGG | 0.495230 | 1_4:+1488263 | None:intergenic |
| ATATGTAATACCAGGTGAGC+AGG | 0.501569 | 1_4:+1489328 | None:intergenic |
| AATTACCTGCATCAACTGTA+AGG | 0.508475 | 1_4:-1491200 | Msa0142550:CDS |
| GCAGGTAATTTCCCCGTACC+AGG | 0.509277 | 1_4:+1491213 | None:intergenic |
| TCCTTGGATTGTCGATCGCA+TGG | 0.513756 | 1_4:-1491082 | Msa0142550:CDS |
| ATTATCCATATTGTCAATGC+AGG | 0.514577 | 1_4:-1490336 | Msa0142550:CDS |
| CCGTGTTGCGTACTCTAGTT+CGG | 0.518140 | 1_4:-1488234 | Msa0142550:CDS |
| AGTAATGAATCTAGTGGAAG+TGG | 0.525470 | 1_4:-1491330 | Msa0142550:CDS |
| AATACAAGTTACCTATATGA+TGG | 0.526315 | 1_4:+1488199 | None:intergenic |
| CAAGCTGAAGATATCAGCAT+TGG | 0.526318 | 1_4:+1486911 | None:intergenic |
| ACATCTCTGCCAGAAACTTA+CGG | 0.527267 | 1_4:-1490605 | Msa0142550:CDS |
| AGGATGTTGGTAGGCAGAGA+AGG | 0.527556 | 1_4:-1491180 | Msa0142550:CDS |
| TCACATTCTTTGTAGGTGAG+TGG | 0.527712 | 1_4:-1487001 | Msa0142550:intron |
| AATGCTGATATCTTCAGCTT+GGG | 0.530130 | 1_4:-1486909 | Msa0142550:CDS |
| GGAAGTGGAATGGATGGAGA+AGG | 0.532430 | 1_4:-1491315 | Msa0142550:CDS |
| AAGAAATTTAAGGCATCCTC+AGG | 0.533252 | 1_4:-1488287 | Msa0142550:CDS |
| AAGACCAAACTACCAAGCTA+TGG | 0.533647 | 1_4:-1488496 | Msa0142550:CDS |
| TGCCCCATCAAGATGCCAGC+TGG | 0.534261 | 1_4:+1488581 | None:intergenic |
| AGTCCCACTCGTCGTCTCCA+AGG | 0.538717 | 1_4:+1488338 | None:intergenic |
| TCTAGTGGAAGTGGAATGGA+TGG | 0.542029 | 1_4:-1491321 | Msa0142550:CDS |
| CTCTGTCTATATATATGACC+TGG | 0.550941 | 1_4:-1487262 | Msa0142550:intron |
| TGAATCTAGTGGAAGTGGAA+TGG | 0.552690 | 1_4:-1491325 | Msa0142550:CDS |
| GGATGGTGACATTGTTAGGT+GGG | 0.553199 | 1_4:-1486888 | Msa0142550:CDS |
| GCTGCAAAAGGACAACCAGC+TGG | 0.555581 | 1_4:-1488596 | Msa0142550:CDS |
| TTGCACAGATCACAAAGCTC+AGG | 0.559290 | 1_4:-1491269 | Msa0142550:CDS |
| GTGGATCTTCTATTTGGAGG+AGG | 0.561933 | 1_4:+1486836 | None:intergenic |
| CCTCCAAATAGAAGATCCAC+TGG | 0.564277 | 1_4:-1486833 | Msa0142550:CDS |
| AACATCCTTACAGTTGATGC+AGG | 0.566179 | 1_4:+1491195 | None:intergenic |
| GACCTGTGCAGGTGTGGGAT+AGG | 0.566267 | 1_4:-1488628 | Msa0142550:intron |
| CAACATCATATATTCTGATG+TGG | 0.571580 | 1_4:+1490652 | None:intergenic |
| CTATTTGGAGGAGGAGCAGG+AGG | 0.573524 | 1_4:+1486845 | None:intergenic |
| TGCATCAACTGTAAGGATGT+TGG | 0.585388 | 1_4:-1491193 | Msa0142550:CDS |
| GGGATGGTGACATTGTTAGG+TGG | 0.586134 | 1_4:-1486889 | Msa0142550:CDS |
| TGGGCCTTGGAGACGACGAG+TGG | 0.586629 | 1_4:-1488342 | Msa0142550:CDS |
| CCCATGCGATCGACAATCCA+AGG | 0.588179 | 1_4:+1491081 | None:intergenic |
| AGACCAAACTACCAAGCTAT+GGG | 0.590086 | 1_4:-1488495 | Msa0142550:CDS |
| ATTACATTCATTAATAGTCG+CGG | 0.591496 | 1_4:-1488548 | Msa0142550:CDS |
| CCTTGGATTGTCGATCGCAT+GGG | 0.593733 | 1_4:-1491081 | Msa0142550:CDS |
| CCATATTGTCAATGCAGGAT+CGG | 0.598464 | 1_4:-1490331 | Msa0142550:CDS |
| ATTTACACTGGATCTAGTGA+TGG | 0.599754 | 1_4:-1487285 | Msa0142550:CDS |
| AGCCGCTATTTGCCTACCAA+AGG | 0.600990 | 1_4:-1491105 | Msa0142550:CDS |
| CGAGTGGGACTACCGGTGGA+TGG | 0.601037 | 1_4:-1488326 | Msa0142550:CDS |
| AACCAGCTGGCATCTTGATG+GGG | 0.601649 | 1_4:-1488583 | Msa0142550:CDS |
| GAGACGACGAGTGGGACTAC+CGG | 0.610203 | 1_4:-1488333 | Msa0142550:CDS |
| GGGCCTTGGAGACGACGAGT+GGG | 0.610369 | 1_4:-1488341 | Msa0142550:CDS |
| GTCGTGTTGTTCCTGGTACG+GGG | 0.611745 | 1_4:-1491224 | Msa0142550:CDS |
| GGCAGCAGTAATGAATCTAG+TGG | 0.613796 | 1_4:-1491336 | Msa0142550:CDS |
| ATTTAGGATAGTCCATCCAC+CGG | 0.623304 | 1_4:+1488314 | None:intergenic |
| ACAAGTGACTGTATGAATGA+TGG | 0.623311 | 1_4:-1491363 | Msa0142550:CDS |
| ACACGACTCAAATTCTCATG+TGG | 0.624498 | 1_4:+1491240 | None:intergenic |
| CTGATATCTTCAGCTTGGGA+TGG | 0.627405 | 1_4:-1486905 | Msa0142550:CDS |
| CCGAACTAGAGTACGCAACA+CGG | 0.627548 | 1_4:+1488234 | None:intergenic |
| CCAGGTGAGCAGGAATTCTG+AGG | 0.628041 | 1_4:+1489338 | None:intergenic |
| GACCTTTGGTAGGCAAATAG+CGG | 0.632536 | 1_4:+1491103 | None:intergenic |
| ACAATCCAAGGACCTTTGGT+AGG | 0.633625 | 1_4:+1491093 | None:intergenic |
| GACTGTATGAATGATGGTAG+TGG | 0.634830 | 1_4:-1491357 | Msa0142550:CDS |
| ACCTCTAATACGAACTCCAG+TGG | 0.636276 | 1_4:+1486817 | None:intergenic |
| TCAACTGTAAGGATGTTGGT+AGG | 0.641616 | 1_4:-1491189 | Msa0142550:CDS |
| CTAGAGTACGCAACACGGAG+TGG | 0.643743 | 1_4:+1488239 | None:intergenic |
| CAGAATATATGATGTTGACA+AGG | 0.644861 | 1_4:-1490646 | Msa0142550:CDS |
| AAGTGATGATAGTTTCTGCA+AGG | 0.652431 | 1_4:-1488867 | Msa0142550:intron |
| AGATTCATCAGCAAAGCAGA+CGG | 0.654512 | 1_4:+1488910 | None:intergenic |
| GATTGGAGAATGAAGCGATG+AGG | 0.658890 | 1_4:+1491857 | None:intergenic |
| AGAGTTAGAGACAATGAACA+AGG | 0.658991 | 1_4:-1491388 | Msa0142550:exon |
| ACGACGAGTGGGACTACCGG+TGG | 0.666395 | 1_4:-1488330 | Msa0142550:CDS |
| GTTGCCAATGACTGGTCCTG+AGG | 0.687321 | 1_4:+1488271 | None:intergenic |
| TGATGAATGAATTTAAGGAA+AGG | 0.692997 | 1_4:+1491943 | None:intergenic |
| TCATTGCAGGAAGTTCACGA+TGG | 0.705664 | 1_4:-1489499 | Msa0142550:intron |
| TCTCTGCCAGAAACTTACGG+TGG | 0.772244 | 1_4:-1490602 | Msa0142550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTATTTTTTTACATTT+AGG | - | chr1_4:1487001-1487020 | Msa0142550:intron | 10.0% |
| !!! | ATGCATATATAATTTTTAAA+AGG | + | chr1_4:1488722-1488741 | None:intergenic | 10.0% |
| !!! | ACATATTATTTTCTTATAAT+TGG | - | chr1_4:1489250-1489269 | Msa0142550:intron | 10.0% |
| !!! | TTTTGATTGATATAAGAAAA+GGG | + | chr1_4:1486879-1486898 | None:intergenic | 15.0% |
| !!! | ATTTTGATTGATATAAGAAA+AGG | + | chr1_4:1486880-1486899 | None:intergenic | 15.0% |
| !! | ATATCAATCAAAATTTAACT+TGG | - | chr1_4:1486886-1486905 | Msa0142550:CDS | 15.0% |
| !!! | TATCAATCAAAATTTAACTT+GGG | - | chr1_4:1486887-1486906 | Msa0142550:CDS | 15.0% |
| !!! | TATTTCTGAAACTATAATTA+TGG | - | chr1_4:1487793-1487812 | Msa0142550:intron | 15.0% |
| !!! | ATTTCTGAAACTATAATTAT+GGG | - | chr1_4:1487794-1487813 | Msa0142550:intron | 15.0% |
| !!! | TTGGATTAAATTGATAATAA+CGG | + | chr1_4:1488803-1488822 | None:intergenic | 15.0% |
| !!! | ATAATGATAATGATGAATTT+GGG | - | chr1_4:1489102-1489121 | Msa0142550:intron | 15.0% |
| !!! | TGATATTATTTTCCTATAAT+TGG | - | chr1_4:1489315-1489334 | Msa0142550:intron | 15.0% |
| !! | TTCCATTAGAAATTAAATAA+CGG | + | chr1_4:1490045-1490064 | None:intergenic | 15.0% |
| !! | TACAGATTTATTCTAATAAA+TGG | - | chr1_4:1490157-1490176 | Msa0142550:intron | 15.0% |
| !!! | TTTTCTTGGAATAATAAAAT+AGG | - | chr1_4:1490903-1490922 | Msa0142550:intron | 15.0% |
| !!! | TTATTTTTCAATCGAATTTT+GGG | + | chr1_4:1491052-1491071 | None:intergenic | 15.0% |
| !!! | ATTATTTTTCAATCGAATTT+TGG | + | chr1_4:1491053-1491072 | None:intergenic | 15.0% |
| !!! | CATTAAGAACTTTTTTTTTT+TGG | + | chr1_4:1491460-1491479 | None:intergenic | 15.0% |
| !!! | ACTAAATCCATTTTTAAAAT+TGG | - | chr1_4:1491512-1491531 | Msa0142550:intron | 15.0% |
| !!! | TGTTAAACCAATTTTAAAAA+TGG | + | chr1_4:1491522-1491541 | None:intergenic | 15.0% |
| !! | TTAATCTAAGAATTTATGAT+AGG | + | chr1_4:1491947-1491966 | None:intergenic | 15.0% |
| !! | ATTAAAGAGAAAATGAATGT+GGG | + | chr1_4:1486789-1486808 | None:intergenic | 20.0% |
| !! | AATTAAAGAGAAAATGAATG+TGG | + | chr1_4:1486790-1486809 | None:intergenic | 20.0% |
| !!! | TTAGTTCTACAAATGAAATT+AGG | + | chr1_4:1486956-1486975 | None:intergenic | 20.0% |
| !!! | CTTATTTTTTTACATTTAGG+TGG | - | chr1_4:1487004-1487023 | Msa0142550:intron | 20.0% |
| !!! | GATAGAATTTTATCATAGTT+TGG | - | chr1_4:1487073-1487092 | Msa0142550:intron | 20.0% |
| !! | TTTAAGAATTCCTTTATCTA+AGG | - | chr1_4:1487113-1487132 | Msa0142550:intron | 20.0% |
| !! | TTAAGAATTCCTTTATCTAA+GGG | - | chr1_4:1487114-1487133 | Msa0142550:intron | 20.0% |
| !!! | TCCATTTTTCAAAATACTAT+CGG | + | chr1_4:1487661-1487680 | None:intergenic | 20.0% |
| !! | GTCATATGAATGATTTATAA+TGG | - | chr1_4:1488415-1488434 | Msa0142550:intron | 20.0% |
| !! | TTTAAAAGGAAAATGACAAA+GGG | + | chr1_4:1488708-1488727 | None:intergenic | 20.0% |
| !!! | TTTTAAAAGGAAAATGACAA+AGG | + | chr1_4:1488709-1488728 | None:intergenic | 20.0% |
| !! | GTTATTATCAATTTAATCCA+AGG | - | chr1_4:1488802-1488821 | Msa0142550:intron | 20.0% |
| !!! | GATAATGATAATGATGAATT+TGG | - | chr1_4:1489101-1489120 | Msa0142550:intron | 20.0% |
| !!! | TTTCTCTATCAAATTTTCAA+CGG | - | chr1_4:1489127-1489146 | Msa0142550:intron | 20.0% |
| !! | AGAAAATAATATGTAATACC+AGG | + | chr1_4:1489244-1489263 | None:intergenic | 20.0% |
| !!! | AAAGAAATTAAGTAGCTTTA+AGG | + | chr1_4:1489547-1489566 | None:intergenic | 20.0% |
| !! | TATTTCTTTATATGTCAGTA+TGG | - | chr1_4:1489573-1489592 | Msa0142550:intron | 20.0% |
| !!! | TTACTTTCATTTCATTGATT+TGG | - | chr1_4:1489872-1489891 | Msa0142550:intron | 20.0% |
| !! | CAAAAAAAAATCTTACTTCA+TGG | + | chr1_4:1490116-1490135 | None:intergenic | 20.0% |
| !! | CTTAAATTTCTTGCATATTT+AGG | + | chr1_4:1490266-1490285 | None:intergenic | 20.0% |
| !! | CTAAATATGCAAGAAATTTA+AGG | - | chr1_4:1490264-1490283 | Msa0142550:intron | 20.0% |
| !!! | ATATAGGTAACTTGTATTTT+TGG | - | chr1_4:1490367-1490386 | Msa0142550:intron | 20.0% |
| !! | TCTGAATTTCCAAAATATTT+AGG | - | chr1_4:1490437-1490456 | Msa0142550:intron | 20.0% |
| !!! | AGTTCAAAACCTAAATATTT+TGG | + | chr1_4:1490449-1490468 | None:intergenic | 20.0% |
| !! | TTTGTTTATAATATCACTCA+AGG | - | chr1_4:1490652-1490671 | Msa0142550:CDS | 20.0% |
| !! | AAATCAAAAGAGAAAAGAAA+AGG | + | chr1_4:1490773-1490792 | None:intergenic | 20.0% |
| !!! | AACGATAACAATTTTTTTCT+TGG | - | chr1_4:1490889-1490908 | Msa0142550:intron | 20.0% |
| !! | TTATTGATGTTATATCATCT+TGG | - | chr1_4:1491016-1491035 | Msa0142550:intron | 20.0% |
| !!! | AAATAAGTGTAACAAACTTT+TGG | + | chr1_4:1491897-1491916 | None:intergenic | 20.0% |
| ! | TGATGAATGAATTTAAGGAA+AGG | + | chr1_4:1486621-1486640 | None:intergenic | 25.0% |
| !! | ACTTGGGAAAAAAAAGTTTT+TGG | - | chr1_4:1486903-1486922 | Msa0142550:CDS | 25.0% |
| !! | TAGGTGGTAATTTTACATTT+AGG | - | chr1_4:1487020-1487039 | Msa0142550:intron | 25.0% |
| ! | TTTACATTTAGGTGGTAATT+TGG | - | chr1_4:1487012-1487031 | Msa0142550:intron | 25.0% |
| ! | TTACATTTAGGTGGTAATTT+GGG | - | chr1_4:1487013-1487032 | Msa0142550:intron | 25.0% |
| !! | TTGATATGATGCATTTTTGT+AGG | - | chr1_4:1487142-1487161 | Msa0142550:intron | 25.0% |
| ! | ATAAGTAACTACAATCAGAA+TGG | + | chr1_4:1487580-1487599 | None:intergenic | 25.0% |
| !!! | ACCGATAGTATTTTGAAAAA+TGG | - | chr1_4:1487657-1487676 | Msa0142550:intron | 25.0% |
| ! | TTTGTGCTTTGTATGAAAAA+GGG | - | chr1_4:1487883-1487902 | Msa0142550:intron | 25.0% |
| ! | GTCAAAATGCAAAGTTAAAA+GGG | + | chr1_4:1488161-1488180 | None:intergenic | 25.0% |
| ! | TGTCAAAATGCAAAGTTAAA+AGG | + | chr1_4:1488162-1488181 | None:intergenic | 25.0% |
| ! | AATTGTTAATTCATCATTGC+AGG | - | chr1_4:1488182-1488201 | Msa0142550:intron | 25.0% |
| ! | TAACAATATGAGAATTAGCT+GGG | + | chr1_4:1488347-1488366 | None:intergenic | 25.0% |
| ! | TTAACAATATGAGAATTAGC+TGG | + | chr1_4:1488348-1488367 | None:intergenic | 25.0% |
| ! | TGACAACTTATGAGTTTAAT+AGG | + | chr1_4:1488612-1488631 | None:intergenic | 25.0% |
| ! | TTAACTTTGACACCAAATAT+TGG | - | chr1_4:1488777-1488796 | Msa0142550:intron | 25.0% |
| ! | TCAATATGTGTATATGATCT+TGG | - | chr1_4:1489185-1489204 | Msa0142550:intron | 25.0% |
| ! | AAATCATTTCTAACAGTACA+TGG | + | chr1_4:1489493-1489512 | None:intergenic | 25.0% |
| ! | CTAATTTAAATCACCAACAA+TGG | + | chr1_4:1489811-1489830 | None:intergenic | 25.0% |
| ! | ATTACATTCATTAATAGTCG+CGG | - | chr1_4:1490013-1490032 | Msa0142550:intron | 25.0% |
| ! | TATTATTTAAACCTACAGTC+TGG | - | chr1_4:1490199-1490218 | Msa0142550:intron | 25.0% |
| ! | ATTATTTAAACCTACAGTCT+GGG | - | chr1_4:1490200-1490219 | Msa0142550:intron | 25.0% |
| ! | AATACAAGTTACCTATATGA+TGG | + | chr1_4:1490365-1490384 | None:intergenic | 25.0% |
| ! | ACATCAAAAATTTGAACCTA+CGG | + | chr1_4:1490604-1490623 | None:intergenic | 25.0% |
| !! | TTTTTGTGGTCATTTAAATC+TGG | + | chr1_4:1490858-1490877 | None:intergenic | 25.0% |
| ! | AAAAATTGTTATCGTTTCAG+AGG | + | chr1_4:1490885-1490904 | None:intergenic | 25.0% |
| ! | GATATAACATCAATAAAGCA+TGG | + | chr1_4:1491012-1491031 | None:intergenic | 25.0% |
| ! | AGGATTTATCAATTTCAACA+TGG | + | chr1_4:1491092-1491111 | None:intergenic | 25.0% |
| ! | TCAACTAAAACATTACTTCA+CGG | + | chr1_4:1491119-1491138 | None:intergenic | 25.0% |
| !! | ATTTAGTTTATGTACACTGT+TGG | + | chr1_4:1491499-1491518 | None:intergenic | 25.0% |
| ! | TTTAGATTCACATTCTTTGT+AGG | - | chr1_4:1491553-1491572 | Msa0142550:intron | 25.0% |
| ! | TTTGTACATATTTATCTCTC+CGG | - | chr1_4:1491786-1491805 | Msa0142550:intron | 25.0% |
| ! | TTACAAAGCTTACAAAAACA+AGG | + | chr1_4:1491923-1491942 | None:intergenic | 25.0% |
| ATTGAAACAGTGTTTGATGA+TGG | + | chr1_4:1486596-1486615 | None:intergenic | 30.0% | |
| GTGTGTGATGAATGAATTTA+AGG | + | chr1_4:1486626-1486645 | None:intergenic | 30.0% | |
| ATTCACCATCACTAAAACAA+GGG | + | chr1_4:1486744-1486763 | None:intergenic | 30.0% | |
| AATTCACCATCACTAAAACA+AGG | + | chr1_4:1486745-1486764 | None:intergenic | 30.0% | |
| GATTGATATAAGAAAAGGGT+CGG | + | chr1_4:1486875-1486894 | None:intergenic | 30.0% | |
| GAACTAATATTCATAGTGTG+AGG | - | chr1_4:1486969-1486988 | Msa0142550:CDS | 30.0% | |
| ! | GTGGTAATTTTACATTTAGG+TGG | - | chr1_4:1487023-1487042 | Msa0142550:intron | 30.0% |
| TCAAAGAAACCCTTAGATAA+AGG | + | chr1_4:1487126-1487145 | None:intergenic | 30.0% | |
| !! | AAGGTAATTTTTCTGGAAGA+GGG | - | chr1_4:1487400-1487419 | Msa0142550:intron | 30.0% |
| ! | TCTTTTTATTGCTGGATTTC+AGG | - | chr1_4:1487542-1487561 | Msa0142550:intron | 30.0% |
| TTGAAAGTAACTACATGTGT+TGG | - | chr1_4:1487686-1487705 | Msa0142550:intron | 30.0% | |
| AACTATAATTATGGGACCAA+AGG | - | chr1_4:1487802-1487821 | Msa0142550:intron | 30.0% | |
| ACTATAATTATGGGACCAAA+GGG | - | chr1_4:1487803-1487822 | Msa0142550:intron | 30.0% | |
| GTTTGTGCTTTGTATGAAAA+AGG | - | chr1_4:1487882-1487901 | Msa0142550:intron | 30.0% | |
| CAACATCATATATTCTGATG+TGG | + | chr1_4:1487912-1487931 | None:intergenic | 30.0% | |
| CAGAATATATGATGTTGACA+AGG | - | chr1_4:1487915-1487934 | Msa0142550:intron | 30.0% | |
| !! | TTCAACTTGTTTTCCATATG+AGG | - | chr1_4:1488029-1488048 | Msa0142550:intron | 30.0% |
| ! | GCATTGACAATATGGATAAT+TGG | + | chr1_4:1488225-1488244 | None:intergenic | 30.0% |
| ATTATCCATATTGTCAATGC+AGG | - | chr1_4:1488225-1488244 | Msa0142550:CDS | 30.0% | |
| !! | CCTTAAATTTTATAGCCTTG+CGG | + | chr1_4:1488484-1488503 | None:intergenic | 30.0% |
| TGATAATAACGGCCAATATT+TGG | + | chr1_4:1488792-1488811 | None:intergenic | 30.0% | |
| AACTTAAGTGAATTATGGAG+AGG | + | chr1_4:1488828-1488847 | None:intergenic | 30.0% | |
| GTGAGAACTTAAGTGAATTA+TGG | + | chr1_4:1488833-1488852 | None:intergenic | 30.0% | |
| ATAGAACGTGTAATTGCTAA+GGG | + | chr1_4:1488874-1488893 | None:intergenic | 30.0% | |
| ATAAATCCTTCTTTCATTGC+AGG | - | chr1_4:1489049-1489068 | Msa0142550:intron | 30.0% | |
| ! | TCTATCAAATTTTCAACGGA+TGG | - | chr1_4:1489131-1489150 | Msa0142550:intron | 30.0% |
| ! | CTATCAAATTTTCAACGGAT+GGG | - | chr1_4:1489132-1489151 | Msa0142550:intron | 30.0% |
| ACAAATCAGCAACCAATTAT+AGG | + | chr1_4:1489330-1489349 | None:intergenic | 30.0% | |
| ACCTCAAACTTCTTACTAAT+GGG | + | chr1_4:1489410-1489429 | None:intergenic | 30.0% | |
| AACCTCAAACTTCTTACTAA+TGG | + | chr1_4:1489411-1489430 | None:intergenic | 30.0% | |
| ATCAGACTGCAACATAAAAA+AGG | + | chr1_4:1489624-1489643 | None:intergenic | 30.0% | |
| CGAAGTCTCAAATAGTTATA+AGG | + | chr1_4:1489729-1489748 | None:intergenic | 30.0% | |
| ! | GGCCGTTATTTAATTTCTAA+TGG | - | chr1_4:1490040-1490059 | Msa0142550:intron | 30.0% |
| ! | TTTTTGTCCTTCACTTTGTT+TGG | - | chr1_4:1490130-1490149 | Msa0142550:intron | 30.0% |
| !! | GTTATTTCTCACCATCATAT+AGG | - | chr1_4:1490351-1490370 | Msa0142550:CDS | 30.0% |
| !!! | TTTAGGTTTTGAACTGCTAA+TGG | - | chr1_4:1490454-1490473 | Msa0142550:intron | 30.0% |
| !!! | ATTTGTTTTGCTTAGTAGCT+AGG | - | chr1_4:1490556-1490575 | Msa0142550:intron | 30.0% |
| TAAGACGATAAATGAGTACA+AGG | + | chr1_4:1490722-1490741 | None:intergenic | 30.0% | |
| GTCTTATCTTGCAATACTAT+TGG | - | chr1_4:1490736-1490755 | Msa0142550:intron | 30.0% | |
| CAACTAAAACATTACTTCAC+GGG | + | chr1_4:1491118-1491137 | None:intergenic | 30.0% | |
| GAATTAATATTGCAGACTTG+AGG | + | chr1_4:1491154-1491173 | None:intergenic | 30.0% | |
| GGTCAAAAATACATTTACAC+TGG | - | chr1_4:1491264-1491283 | Msa0142550:CDS | 30.0% | |
| !! | TATAAGCAAGTGTTTTTACC+AGG | + | chr1_4:1491320-1491339 | None:intergenic | 30.0% |
| ! | ACATGATTAGTTGTGATTTG+TGG | + | chr1_4:1491384-1491403 | None:intergenic | 30.0% |
| GCTACCTAAATATATGTATC+CGG | + | chr1_4:1491808-1491827 | None:intergenic | 30.0% | |
| TTCTCTTACACCAATAGAAA+AGG | - | chr1_4:1491869-1491888 | Msa0142550:five_prime_UTR | 30.0% | |
| !!! | ACTTTTGGAACCTTTTCTAT+TGG | + | chr1_4:1491882-1491901 | None:intergenic | 30.0% |
| TTCACCATCACTAAAACAAG+GGG | + | chr1_4:1486743-1486762 | None:intergenic | 35.0% | |
| AAGAGAAAATGAATGTGGGT+TGG | + | chr1_4:1486785-1486804 | None:intergenic | 35.0% | |
| ATTCATAGTGTGAGGCTAAA+AGG | - | chr1_4:1486977-1486996 | Msa0142550:CDS | 35.0% | |
| AGAGTTAGAGACAATGAACA+AGG | - | chr1_4:1487173-1487192 | Msa0142550:intron | 35.0% | |
| ACAAGTGACTGTATGAATGA+TGG | - | chr1_4:1487198-1487217 | Msa0142550:intron | 35.0% | |
| AGTAATGAATCTAGTGGAAG+TGG | - | chr1_4:1487231-1487250 | Msa0142550:intron | 35.0% | |
| AATTACCTGCATCAACTGTA+AGG | - | chr1_4:1487361-1487380 | Msa0142550:intron | 35.0% | |
| !! | GAAGGTAATTTTTCTGGAAG+AGG | - | chr1_4:1487399-1487418 | Msa0142550:intron | 35.0% |
| ! | GATGGTTCTCTTTTTATTGC+TGG | - | chr1_4:1487534-1487553 | Msa0142550:intron | 35.0% |
| AGTAACTACAATCAGAATGG+TGG | + | chr1_4:1487577-1487596 | None:intergenic | 35.0% | |
| TGAAGTGAAGCTGAAATATG+AGG | - | chr1_4:1487613-1487632 | Msa0142550:intron | 35.0% | |
| GTAACGATTTAAAGACCCTT+TGG | + | chr1_4:1487821-1487840 | None:intergenic | 35.0% | |
| GGTCTTTAAATCGTTACTTG+TGG | - | chr1_4:1487824-1487843 | Msa0142550:intron | 35.0% | |
| TGACAAAAAATCCTTACTCG+CGG | - | chr1_4:1487857-1487876 | Msa0142550:intron | 35.0% | |
| TATATGATGTTGACAAGGAC+TGG | - | chr1_4:1487920-1487939 | Msa0142550:intron | 35.0% | |
| CTTACAAGATATTGTCGATC+AGG | + | chr1_4:1488009-1488028 | None:intergenic | 35.0% | |
| !! | AACTTGTTTTCCATATGAGG+TGG | - | chr1_4:1488032-1488051 | Msa0142550:intron | 35.0% |
| CAAAGTTAAAAGGGACAAAC+TGG | + | chr1_4:1488152-1488171 | None:intergenic | 35.0% | |
| !! | GCAATTTGCTAATTGAACGA+AGG | + | chr1_4:1488306-1488325 | None:intergenic | 35.0% |
| CCGCAAGGCTATAAAATTTA+AGG | - | chr1_4:1488481-1488500 | Msa0142550:CDS | 35.0% | |
| CTCTCTGTATTCTTGCTAAA+TGG | - | chr1_4:1488634-1488653 | Msa0142550:intron | 35.0% | |
| GAAAATGACAAAGGGTGAAA+AGG | + | chr1_4:1488700-1488719 | None:intergenic | 35.0% | |
| AAATGAGATCAATTGACACC+AGG | - | chr1_4:1488745-1488764 | Msa0142550:intron | 35.0% | |
| CAAAGTTAAACTTTGACACC+TGG | + | chr1_4:1488766-1488785 | None:intergenic | 35.0% | |
| GATAGAACGTGTAATTGCTA+AGG | + | chr1_4:1488875-1488894 | None:intergenic | 35.0% | |
| TTGAAGTGTGTATATGCACA+TGG | + | chr1_4:1489009-1489028 | None:intergenic | 35.0% | |
| GATTTGTCCTAAATCGCTTT+CGG | - | chr1_4:1489343-1489362 | Msa0142550:CDS | 35.0% | |
| CAATAATCCGAAAGCGATTT+AGG | + | chr1_4:1489353-1489372 | None:intergenic | 35.0% | |
| ! | GCTCAAAATATCGAGTCTTT+TGG | - | chr1_4:1489383-1489402 | Msa0142550:CDS | 35.0% |
| TCCCATTAGTAAGAAGTTTG+AGG | - | chr1_4:1489406-1489425 | Msa0142550:CDS | 35.0% | |
| ! | GTAAGAAGTTTGAGGTTTCA+AGG | - | chr1_4:1489414-1489433 | Msa0142550:CDS | 35.0% |
| TTGAGGTTTCAAGGAAGTAA+TGG | - | chr1_4:1489423-1489442 | Msa0142550:CDS | 35.0% | |
| TCTGGTCATCTCATATATTC+TGG | - | chr1_4:1489671-1489690 | Msa0142550:intron | 35.0% | |
| AAGTGATGATAGTTTCTGCA+AGG | - | chr1_4:1489694-1489713 | Msa0142550:intron | 35.0% | |
| GCATGTCATTATTCCATTGT+TGG | - | chr1_4:1489795-1489814 | Msa0142550:intron | 35.0% | |
| GTATCTACCAAACAAAGTGA+AGG | + | chr1_4:1490140-1490159 | None:intergenic | 35.0% | |
| ! | AAGAAATTTAAGGCATCCTC+AGG | - | chr1_4:1490274-1490293 | Msa0142550:intron | 35.0% |
| !!! | ATTCCATAGCTTTTAGCTCA+CGG | - | chr1_4:1490525-1490544 | Msa0142550:intron | 35.0% |
| GTGGTTAAATTGTTATCCGT+AGG | - | chr1_4:1490585-1490604 | Msa0142550:CDS | 35.0% | |
| ! | GTTTCAGAGGAAACTTTTTG+TGG | + | chr1_4:1490872-1490891 | None:intergenic | 35.0% |
| !!! | TGAAAGTACCCTTTTGACTT+AGG | - | chr1_4:1490983-1491002 | Msa0142550:intron | 35.0% |
| CATGGTAACCTAAGTCAAAA+GGG | + | chr1_4:1490994-1491013 | None:intergenic | 35.0% | |
| AAACATTACTTCACGGGAAA+AGG | + | chr1_4:1491112-1491131 | None:intergenic | 35.0% | |
| TGCAAAGAGTTAAGAGAACA+TGG | + | chr1_4:1491190-1491209 | None:intergenic | 35.0% | |
| ATTTACACTGGATCTAGTGA+TGG | - | chr1_4:1491276-1491295 | Msa0142550:CDS | 35.0% | |
| CTCTGTCTATATATATGACC+TGG | - | chr1_4:1491299-1491318 | Msa0142550:CDS | 35.0% | |
| !! | TGTCAAAAGTTCTGAACGAT+CGG | - | chr1_4:1491430-1491449 | Msa0142550:intron | 35.0% |
| ! | GATATCAGCATTGGATAGAA+AGG | + | chr1_4:1491644-1491663 | None:intergenic | 35.0% |
| AATGCTGATATCTTCAGCTT+GGG | - | chr1_4:1491652-1491671 | Msa0142550:intron | 35.0% | |
| CTCTCCGGATACATATATTT+AGG | - | chr1_4:1491801-1491820 | Msa0142550:intron | 35.0% | |
| AACACAACACTCACAGTTGA+TGG | - | chr1_4:1486653-1486672 | Msa0142550:three_prime_UTR | 40.0% | |
| TCACCATCACTAAAACAAGG+GGG | + | chr1_4:1486742-1486761 | None:intergenic | 40.0% | |
| GACTGTATGAATGATGGTAG+TGG | - | chr1_4:1487204-1487223 | Msa0142550:intron | 40.0% | |
| TGAATCTAGTGGAAGTGGAA+TGG | - | chr1_4:1487236-1487255 | Msa0142550:intron | 40.0% | |
| ACACGACTCAAATTCTCATG+TGG | + | chr1_4:1487324-1487343 | None:intergenic | 40.0% | |
| ! | AATTTGAGTCGTGTTGTTCC+TGG | - | chr1_4:1487330-1487349 | Msa0142550:intron | 40.0% |
| ! | AACATCCTTACAGTTGATGC+AGG | + | chr1_4:1487369-1487388 | None:intergenic | 40.0% |
| TGCATCAACTGTAAGGATGT+TGG | - | chr1_4:1487368-1487387 | Msa0142550:intron | 40.0% | |
| TCAACTGTAAGGATGTTGGT+AGG | - | chr1_4:1487372-1487391 | Msa0142550:intron | 40.0% | |
| ! | GGCAGAGAAGGTAATTTTTC+TGG | - | chr1_4:1487393-1487412 | Msa0142550:intron | 40.0% |
| ! | GTTTCGCAGTTTTCAGATGA+TGG | - | chr1_4:1487516-1487535 | Msa0142550:intron | 40.0% |
| !! | TACATGTGTTGGTGTTGTGT+TGG | - | chr1_4:1487697-1487716 | Msa0142550:intron | 40.0% |
| ACATCTCTGCCAGAAACTTA+CGG | - | chr1_4:1487956-1487975 | Msa0142550:intron | 40.0% | |
| AATTGTCCACCGTAAGTTTC+TGG | + | chr1_4:1487968-1487987 | None:intergenic | 40.0% | |
| CAGAATTGGCTGTTTATAGC+AGG | + | chr1_4:1488088-1488107 | None:intergenic | 40.0% | |
| TAAACAGCCAATTCTGACCA+TGG | - | chr1_4:1488092-1488111 | Msa0142550:intron | 40.0% | |
| TTAGATGAATTCACGAGCCA+TGG | + | chr1_4:1488112-1488131 | None:intergenic | 40.0% | |
| CCATATTGTCAATGCAGGAT+CGG | - | chr1_4:1488230-1488249 | Msa0142550:CDS | 40.0% | |
| CAATATGAGAATTAGCTGGG+TGG | + | chr1_4:1488344-1488363 | None:intergenic | 40.0% | |
| AATGGTAGTTCACTGCAAGA+AGG | - | chr1_4:1488652-1488671 | Msa0142550:intron | 40.0% | |
| AGTTCTCACATGTTGTTCGA+CGG | - | chr1_4:1488844-1488863 | Msa0142550:intron | 40.0% | |
| TTCTTCGGCAAGCAACTAAA+AGG | + | chr1_4:1488899-1488918 | None:intergenic | 40.0% | |
| CGTGATGATCACAGATTCTT+CGG | + | chr1_4:1488914-1488933 | None:intergenic | 40.0% | |
| GAACTTCCTGCAATGAAAGA+AGG | + | chr1_4:1489058-1489077 | None:intergenic | 40.0% | |
| ATATGTAATACCAGGTGAGC+AGG | + | chr1_4:1489236-1489255 | None:intergenic | 40.0% | |
| ACATGGATACGTGTCAAACA+AGG | + | chr1_4:1489476-1489495 | None:intergenic | 40.0% | |
| AGATTCATCAGCAAAGCAGA+CGG | + | chr1_4:1489654-1489673 | None:intergenic | 40.0% | |
| AAAAGTGACACAAGCATCTG+CGG | + | chr1_4:1489759-1489778 | None:intergenic | 40.0% | |
| ! | ATCTTGATGGGGCATTTAGA+AGG | - | chr1_4:1489989-1490008 | Msa0142550:intron | 40.0% |
| TTCATTAATAGTCGCGGAGA+TGG | - | chr1_4:1490019-1490038 | Msa0142550:intron | 40.0% | |
| AAGACCAAACTACCAAGCTA+TGG | - | chr1_4:1490065-1490084 | Msa0142550:intron | 40.0% | |
| AGACCAAACTACCAAGCTAT+GGG | - | chr1_4:1490066-1490085 | Msa0142550:intron | 40.0% | |
| ! | ATTTAGGATAGTCCATCCAC+CGG | + | chr1_4:1490250-1490269 | None:intergenic | 40.0% |
| CTTGATATGTTGCCAATGAC+TGG | + | chr1_4:1490301-1490320 | None:intergenic | 40.0% | |
| CAGTCATTGGCAACATATCA+AGG | - | chr1_4:1490299-1490318 | Msa0142550:intron | 40.0% | |
| AGAGCAGTGATATACTAGAG+TGG | + | chr1_4:1490400-1490419 | None:intergenic | 40.0% | |
| TTACCGTGAGCTAAAAGCTA+TGG | + | chr1_4:1490531-1490550 | None:intergenic | 40.0% | |
| TTTGCTTAGTAGCTAGGAGT+TGG | - | chr1_4:1490562-1490581 | Msa0142550:CDS | 40.0% | |
| TTGCTTAGTAGCTAGGAGTT+GGG | - | chr1_4:1490563-1490582 | Msa0142550:CDS | 40.0% | |
| ! | TCAGGATTTCCAAAAGCACA+CGG | + | chr1_4:1490963-1490982 | None:intergenic | 40.0% |
| !! | GTCAAAAGGGTACTTTCATC+AGG | + | chr1_4:1490981-1491000 | None:intergenic | 40.0% |
| GCATGGTAACCTAAGTCAAA+AGG | + | chr1_4:1490995-1491014 | None:intergenic | 40.0% | |
| AGTGCTGCAAAAGGAAATAC+AGG | + | chr1_4:1491244-1491263 | None:intergenic | 40.0% | |
| ! | TGTATTTCCTTTTGCAGCAC+TGG | - | chr1_4:1491243-1491262 | Msa0142550:CDS | 40.0% |
| ! | TTTTTGACCAGTGCTGCAAA+AGG | + | chr1_4:1491253-1491272 | None:intergenic | 40.0% |
| TGTACACTGTTGGTGTAAAG+AGG | + | chr1_4:1491489-1491508 | None:intergenic | 40.0% | |
| TCACATTCTTTGTAGGTGAG+TGG | - | chr1_4:1491560-1491579 | Msa0142550:intron | 40.0% | |
| CAAGCTGAAGATATCAGCAT+TGG | + | chr1_4:1491653-1491672 | None:intergenic | 40.0% | |
| CAATGCTGATATCTTCAGCT+TGG | - | chr1_4:1491651-1491670 | Msa0142550:intron | 40.0% | |
| ATTGTTAGGTGGGAATTTCC+TGG | - | chr1_4:1491683-1491702 | Msa0142550:intron | 40.0% | |
| ACTCCAGTGGATCTTCTATT+TGG | + | chr1_4:1491734-1491753 | None:intergenic | 40.0% | |
| GATTGGAGAATGAAGCGATG+AGG | + | chr1_4:1486707-1486726 | None:intergenic | 45.0% | |
| CTAAAACAAGGGGGGTTTAG+AGG | + | chr1_4:1486733-1486752 | None:intergenic | 45.0% | |
| !!! | AACCCCCCTTGTTTTAGTGA+TGG | - | chr1_4:1486736-1486755 | Msa0142550:three_prime_UTR | 45.0% |
| CACCATCACTAAAACAAGGG+GGG | + | chr1_4:1486741-1486760 | None:intergenic | 45.0% | |
| GGCAGCAGTAATGAATCTAG+TGG | - | chr1_4:1487225-1487244 | Msa0142550:intron | 45.0% | |
| TCTAGTGGAAGTGGAATGGA+TGG | - | chr1_4:1487240-1487259 | Msa0142550:intron | 45.0% | |
| TTGCACAGATCACAAAGCTC+AGG | - | chr1_4:1487292-1487311 | Msa0142550:CDS | 45.0% | |
| GACCTTTGGTAGGCAAATAG+CGG | + | chr1_4:1487461-1487480 | None:intergenic | 45.0% | |
| ATTTGCCTACCAAAGGTCCT+TGG | - | chr1_4:1487463-1487482 | Msa0142550:intron | 45.0% | |
| ACAATCCAAGGACCTTTGGT+AGG | + | chr1_4:1487471-1487490 | None:intergenic | 45.0% | |
| ATCGACAATCCAAGGACCTT+TGG | + | chr1_4:1487475-1487494 | None:intergenic | 45.0% | |
| ! | ACACCCTTAATCGGAAGTGT+CGG | - | chr1_4:1487729-1487748 | Msa0142550:intron | 45.0% |
| ACACCGACACTTCCGATTAA+GGG | + | chr1_4:1487735-1487754 | None:intergenic | 45.0% | |
| AACACCGACACTTCCGATTA+AGG | + | chr1_4:1487736-1487755 | None:intergenic | 45.0% | |
| ! | CATTTGCCAGCTTTCTAGGA+TGG | - | chr1_4:1488055-1488074 | Msa0142550:intron | 45.0% |
| AATCTGCCATCCTAGAAAGC+TGG | + | chr1_4:1488064-1488083 | None:intergenic | 45.0% | |
| ! | CCGATCCTGCATTGACAATA+TGG | + | chr1_4:1488233-1488252 | None:intergenic | 45.0% |
| GACAAAAAAACTCGACCGCA+AGG | - | chr1_4:1488466-1488485 | Msa0142550:CDS | 45.0% | |
| TCACTGCAAGAAGGATGCAT+AGG | - | chr1_4:1488661-1488680 | Msa0142550:intron | 45.0% | |
| CACTGCAAGAAGGATGCATA+GGG | - | chr1_4:1488662-1488681 | Msa0142550:intron | 45.0% | |
| ACTGCAAGAAGGATGCATAG+GGG | - | chr1_4:1488663-1488682 | Msa0142550:intron | 45.0% | |
| AGTGAATTATGGAGAGGCCT+TGG | + | chr1_4:1488822-1488841 | None:intergenic | 45.0% | |
| GAACGTGTAATTGCTAAGGG+TGG | + | chr1_4:1488871-1488890 | None:intergenic | 45.0% | |
| TCATTGCAGGAAGTTCACGA+TGG | - | chr1_4:1489062-1489081 | Msa0142550:intron | 45.0% | |
| GTCTGCTTTGCTGATGAATC+TGG | - | chr1_4:1489653-1489672 | Msa0142550:intron | 45.0% | |
| GCTGTTATTATGACCTGTGC+AGG | - | chr1_4:1489922-1489941 | Msa0142550:intron | 45.0% | |
| TATTATGACCTGTGCAGGTG+TGG | - | chr1_4:1489927-1489946 | Msa0142550:intron | 45.0% | |
| ATTATGACCTGTGCAGGTGT+GGG | - | chr1_4:1489928-1489947 | Msa0142550:intron | 45.0% | |
| ! | TGTCCCATAGCTTGGTAGTT+TGG | + | chr1_4:1490072-1490091 | None:intergenic | 45.0% |
| CTACCAAGCTATGGGACATA+AGG | - | chr1_4:1490074-1490093 | Msa0142550:intron | 45.0% | |
| CTTCCTTATGTCCCATAGCT+TGG | + | chr1_4:1490080-1490099 | None:intergenic | 45.0% | |
| ! | CACCTTTAAGAGATTGCAGC+TGG | - | chr1_4:1491615-1491634 | Msa0142550:intron | 45.0% |
| TGCCAGCTGCAATCTCTTAA+AGG | + | chr1_4:1491620-1491639 | None:intergenic | 45.0% | |
| CTGATATCTTCAGCTTGGGA+TGG | - | chr1_4:1491656-1491675 | Msa0142550:intron | 45.0% | |
| CTTGGGATGGTGACATTGTT+AGG | - | chr1_4:1491669-1491688 | Msa0142550:intron | 45.0% | |
| GGATGGTGACATTGTTAGGT+GGG | - | chr1_4:1491673-1491692 | Msa0142550:intron | 45.0% | |
| AGGTGGGAATTTCCTGGAAA+TGG | - | chr1_4:1491689-1491708 | Msa0142550:intron | 45.0% | |
| GTGGATCTTCTATTTGGAGG+AGG | + | chr1_4:1491728-1491747 | None:intergenic | 45.0% | |
| CCAGTGGATCTTCTATTTGG+AGG | + | chr1_4:1491731-1491750 | None:intergenic | 45.0% | |
| CCTCCAAATAGAAGATCCAC+TGG | - | chr1_4:1491728-1491747 | Msa0142550:intron | 45.0% | |
| TCCACTGGAGTTCGTATTAG+AGG | - | chr1_4:1491743-1491762 | Msa0142550:intron | 45.0% | |
| ACCTCTAATACGAACTCCAG+TGG | + | chr1_4:1491747-1491766 | None:intergenic | 45.0% | |
| GGGGGGTTTAGAGGAATGAT+TGG | + | chr1_4:1486724-1486743 | None:intergenic | 50.0% | |
| GGAAGTGGAATGGATGGAGA+AGG | - | chr1_4:1487246-1487265 | Msa0142550:intron | 50.0% | |
| ! | GAGTCGTGTTGTTCCTGGTA+CGG | - | chr1_4:1487335-1487354 | Msa0142550:intron | 50.0% |
| ! | AGTCGTGTTGTTCCTGGTAC+GGG | - | chr1_4:1487336-1487355 | Msa0142550:intron | 50.0% |
| ! | AGGATGTTGGTAGGCAGAGA+AGG | - | chr1_4:1487381-1487400 | Msa0142550:intron | 50.0% |
| AGCCGCTATTTGCCTACCAA+AGG | - | chr1_4:1487456-1487475 | Msa0142550:intron | 50.0% | |
| TCCTTGGATTGTCGATCGCA+TGG | - | chr1_4:1487479-1487498 | Msa0142550:intron | 50.0% | |
| CCTTGGATTGTCGATCGCAT+GGG | - | chr1_4:1487480-1487499 | Msa0142550:intron | 50.0% | |
| !! | GTTGGTGTTGTGTTGGACAC+CGG | - | chr1_4:1487704-1487723 | Msa0142550:intron | 50.0% |
| ACACCGGACACACCCTTAAT+CGG | - | chr1_4:1487720-1487739 | Msa0142550:intron | 50.0% | |
| ! | CTTCCGATTAAGGGTGTGTC+CGG | + | chr1_4:1487726-1487745 | None:intergenic | 50.0% |
| AGCACAAACAACCGCGAGTA+AGG | + | chr1_4:1487871-1487890 | None:intergenic | 50.0% | |
| TCTCTGCCAGAAACTTACGG+TGG | - | chr1_4:1487959-1487978 | Msa0142550:intron | 50.0% | |
| CTGGCAAATGCCACCTCATA+TGG | + | chr1_4:1488045-1488064 | None:intergenic | 50.0% | |
| GTGGCATTTGCCAGCTTTCT+AGG | - | chr1_4:1488051-1488070 | Msa0142550:intron | 50.0% | |
| TCACGAGCCATGGTCAGAAT+TGG | + | chr1_4:1488102-1488121 | None:intergenic | 50.0% | |
| CTGCAAGAAGGATGCATAGG+GGG | - | chr1_4:1488664-1488683 | Msa0142550:intron | 50.0% | |
| ! | AGGCGTTGCTTTGCTGCAAA+AGG | - | chr1_4:1489953-1489972 | Msa0142550:intron | 50.0% |
| ACAACCAGCTGGCATCTTGA+TGG | - | chr1_4:1489976-1489995 | Msa0142550:intron | 50.0% | |
| CAACCAGCTGGCATCTTGAT+GGG | - | chr1_4:1489977-1489996 | Msa0142550:intron | 50.0% | |
| AACCAGCTGGCATCTTGATG+GGG | - | chr1_4:1489978-1489997 | Msa0142550:intron | 50.0% | |
| TAAACCTACAGTCTGGGCCT+TGG | - | chr1_4:1490206-1490225 | Msa0142550:intron | 50.0% | |
| CCGAACTAGAGTACGCAACA+CGG | + | chr1_4:1490330-1490349 | None:intergenic | 50.0% | |
| CCGTGTTGCGTACTCTAGTT+CGG | - | chr1_4:1490327-1490346 | Msa0142550:CDS | 50.0% | |
| CTTAGTAGCTAGGAGTTGGG+TGG | - | chr1_4:1490566-1490585 | Msa0142550:CDS | 50.0% | |
| ! | TCCAAGTCTCCGTGTGCTTT+TGG | - | chr1_4:1490951-1490970 | Msa0142550:intron | 50.0% |
| ! | TCCAAAAGCACACGGAGACT+TGG | + | chr1_4:1490955-1490974 | None:intergenic | 50.0% |
| GGGATGGTGACATTGTTAGG+TGG | - | chr1_4:1491672-1491691 | Msa0142550:intron | 50.0% | |
| CTTCTATTTGGAGGAGGAGC+AGG | + | chr1_4:1491722-1491741 | None:intergenic | 50.0% | |
| ! | GTCGTGTTGTTCCTGGTACG+GGG | - | chr1_4:1487337-1487356 | Msa0142550:intron | 55.0% |
| GCAGGTAATTTCCCCGTACC+AGG | + | chr1_4:1487351-1487370 | None:intergenic | 55.0% | |
| CCCATGCGATCGACAATCCA+AGG | + | chr1_4:1487483-1487502 | None:intergenic | 55.0% | |
| CCAGGTGAGCAGGAATTCTG+AGG | + | chr1_4:1489226-1489245 | None:intergenic | 55.0% | |
| CCTCAGAATTCCTGCTCACC+TGG | - | chr1_4:1489223-1489242 | Msa0142550:intron | 55.0% | |
| GCTGCAAAAGGACAACCAGC+TGG | - | chr1_4:1489965-1489984 | Msa0142550:intron | 55.0% | |
| GCATCCTCAGGACCAGTCAT+TGG | - | chr1_4:1490286-1490305 | Msa0142550:intron | 55.0% | |
| ! | GTTGCCAATGACTGGTCCTG+AGG | + | chr1_4:1490293-1490312 | None:intergenic | 55.0% |
| CTAGAGTACGCAACACGGAG+TGG | + | chr1_4:1490325-1490344 | None:intergenic | 55.0% | |
| GCAGGAGGTTGACCATTTCC+AGG | + | chr1_4:1491704-1491723 | None:intergenic | 55.0% | |
| CTATTTGGAGGAGGAGCAGG+AGG | + | chr1_4:1491719-1491738 | None:intergenic | 55.0% | |
| GGATGCATAGGGGGAGAGCA+AGG | - | chr1_4:1488673-1488692 | Msa0142550:intron | 60.0% | |
| GATGGGCGAGAGCTTGTGTC+TGG | - | chr1_4:1489149-1489168 | Msa0142550:intron | 60.0% | |
| GACCTGTGCAGGTGTGGGAT+AGG | - | chr1_4:1489933-1489952 | Msa0142550:intron | 60.0% | |
| TGCCCCATCAAGATGCCAGC+TGG | + | chr1_4:1489983-1490002 | None:intergenic | 60.0% | |
| GTCTCCAAGGCCCAGACTGT+AGG | + | chr1_4:1490213-1490232 | None:intergenic | 60.0% | |
| AGTCCCACTCGTCGTCTCCA+AGG | + | chr1_4:1490226-1490245 | None:intergenic | 60.0% | |
| GAGACGACGAGTGGGACTAC+CGG | - | chr1_4:1490228-1490247 | Msa0142550:intron | 60.0% | |
| CGCCTATCCCACACCTGCAC+AGG | + | chr1_4:1489938-1489957 | None:intergenic | 65.0% | |
| TGGGCCTTGGAGACGACGAG+TGG | - | chr1_4:1490219-1490238 | Msa0142550:intron | 65.0% | |
| GGGCCTTGGAGACGACGAGT+GGG | - | chr1_4:1490220-1490239 | Msa0142550:intron | 65.0% | |
| ACGACGAGTGGGACTACCGG+TGG | - | chr1_4:1490231-1490250 | Msa0142550:intron | 65.0% | |
| CGAGTGGGACTACCGGTGGA+TGG | - | chr1_4:1490235-1490254 | Msa0142550:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 1486575 | 1492008 | 1486575 | ID=Msa0142550;Name=Msa0142550 |
| chr1_4 | mRNA | 1486575 | 1492008 | 1486575 | ID=Msa0142550-mRNA-1;Parent=Msa0142550;Name=Msa0142550-mRNA-1;_AED=0.05;_eAED=0.05;_QI=180|1|1|1|0.88|0.8|10|227|475 |
| chr1_4 | exon | 1486575 | 1487008 | 1486575 | ID=Msa0142550-mRNA-1:exon:538;Parent=Msa0142550-mRNA-1 |
| chr1_4 | exon | 1487263 | 1487323 | 1487263 | ID=Msa0142550-mRNA-1:exon:537;Parent=Msa0142550-mRNA-1 |
| chr1_4 | exon | 1488211 | 1488366 | 1488211 | ID=Msa0142550-mRNA-1:exon:536;Parent=Msa0142550-mRNA-1 |
| chr1_4 | exon | 1488464 | 1488639 | 1488464 | ID=Msa0142550-mRNA-1:exon:535;Parent=Msa0142550-mRNA-1 |
| chr1_4 | exon | 1488868 | 1488945 | 1488868 | ID=Msa0142550-mRNA-1:exon:534;Parent=Msa0142550-mRNA-1 |
| chr1_4 | exon | 1489339 | 1489512 | 1489339 | ID=Msa0142550-mRNA-1:exon:533;Parent=Msa0142550-mRNA-1 |
| chr1_4 | exon | 1490302 | 1490379 | 1490302 | ID=Msa0142550-mRNA-1:exon:532;Parent=Msa0142550-mRNA-1 |
| chr1_4 | exon | 1490560 | 1490679 | 1490560 | ID=Msa0142550-mRNA-1:exon:531;Parent=Msa0142550-mRNA-1 |
| chr1_4 | exon | 1491020 | 1491419 | 1491020 | ID=Msa0142550-mRNA-1:exon:530;Parent=Msa0142550-mRNA-1 |
| chr1_4 | exon | 1491851 | 1492008 | 1491851 | ID=Msa0142550-mRNA-1:exon:529;Parent=Msa0142550-mRNA-1 |
| chr1_4 | five_prime_UTR | 1491851 | 1492008 | 1491851 | ID=Msa0142550-mRNA-1:five_prime_utr;Parent=Msa0142550-mRNA-1 |
| chr1_4 | five_prime_UTR | 1491398 | 1491419 | 1491398 | ID=Msa0142550-mRNA-1:five_prime_utr;Parent=Msa0142550-mRNA-1 |
| chr1_4 | CDS | 1491020 | 1491397 | 1491020 | ID=Msa0142550-mRNA-1:cds;Parent=Msa0142550-mRNA-1 |
| chr1_4 | CDS | 1490560 | 1490679 | 1490560 | ID=Msa0142550-mRNA-1:cds;Parent=Msa0142550-mRNA-1 |
| chr1_4 | CDS | 1490302 | 1490379 | 1490302 | ID=Msa0142550-mRNA-1:cds;Parent=Msa0142550-mRNA-1 |
| chr1_4 | CDS | 1489339 | 1489512 | 1489339 | ID=Msa0142550-mRNA-1:cds;Parent=Msa0142550-mRNA-1 |
| chr1_4 | CDS | 1488868 | 1488945 | 1488868 | ID=Msa0142550-mRNA-1:cds;Parent=Msa0142550-mRNA-1 |
| chr1_4 | CDS | 1488464 | 1488639 | 1488464 | ID=Msa0142550-mRNA-1:cds;Parent=Msa0142550-mRNA-1 |
| chr1_4 | CDS | 1488211 | 1488366 | 1488211 | ID=Msa0142550-mRNA-1:cds;Parent=Msa0142550-mRNA-1 |
| chr1_4 | CDS | 1487263 | 1487323 | 1487263 | ID=Msa0142550-mRNA-1:cds;Parent=Msa0142550-mRNA-1 |
| chr1_4 | CDS | 1486802 | 1487008 | 1486802 | ID=Msa0142550-mRNA-1:cds;Parent=Msa0142550-mRNA-1 |
| chr1_4 | three_prime_UTR | 1486575 | 1486801 | 1486575 | ID=Msa0142550-mRNA-1:three_prime_utr;Parent=Msa0142550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
