Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143090 | XP_003593959.1 | 97.170 | 212 | 5 | 1 | 1 | 211 | 1 | 212 | 3.63e-144 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143090 | sp|Q9ZRA4|AB19A_PRUPE | 49.524 | 210 | 95 | 5 | 6 | 210 | 5 | 208 | 1.27e-60 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143090 | G7IPZ2 | 97.170 | 212 | 5 | 1 | 1 | 211 | 1 | 212 | 1.74e-144 | 410 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0143090 | Msa0236990 | 0.998691 | 4.093400e-273 | -8.615850e-47 |
| Msa0143090 | Msa1444440 | 0.890563 | 8.802493e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143090 | MtrunA17_Chr2g0286171 | 97.170 | 212 | 5 | 1 | 1 | 211 | 1 | 212 | 3.34e-148 | 410 |
| Msa0143090 | MtrunA17_Chr3g0115141 | 84.360 | 211 | 32 | 1 | 1 | 211 | 1 | 210 | 4.13e-117 | 332 |
| Msa0143090 | MtrunA17_Chr4g0003361 | 64.623 | 212 | 65 | 5 | 3 | 211 | 1 | 205 | 6.87e-85 | 250 |
| Msa0143090 | MtrunA17_Chr8g0343934 | 55.607 | 214 | 87 | 4 | 1 | 211 | 1 | 209 | 7.47e-78 | 232 |
| Msa0143090 | MtrunA17_Chr8g0343954 | 54.206 | 214 | 90 | 3 | 1 | 211 | 1 | 209 | 5.89e-77 | 230 |
| Msa0143090 | MtrunA17_Chr8g0344031 | 57.944 | 214 | 84 | 4 | 1 | 211 | 1 | 211 | 2.61e-75 | 226 |
| Msa0143090 | MtrunA17_Chr8g0344041 | 57.674 | 215 | 81 | 5 | 1 | 211 | 5 | 213 | 5.60e-75 | 225 |
| Msa0143090 | MtrunA17_Chr8g0343961 | 53.738 | 214 | 91 | 4 | 1 | 211 | 1 | 209 | 1.21e-73 | 221 |
| Msa0143090 | MtrunA17_Chr2g0301611 | 53.738 | 214 | 91 | 4 | 1 | 211 | 1 | 209 | 4.37e-73 | 220 |
| Msa0143090 | MtrunA17_Chr8g0344021 | 55.349 | 215 | 89 | 4 | 1 | 211 | 1 | 212 | 1.19e-72 | 219 |
| Msa0143090 | MtrunA17_Chr2g0313961 | 52.113 | 213 | 94 | 4 | 1 | 210 | 1 | 208 | 4.83e-71 | 215 |
| Msa0143090 | MtrunA17_Chr2g0302171 | 52.778 | 216 | 90 | 4 | 1 | 211 | 1 | 209 | 1.13e-70 | 214 |
| Msa0143090 | MtrunA17_Chr7g0217811 | 57.447 | 188 | 76 | 2 | 27 | 211 | 23 | 209 | 9.30e-70 | 211 |
| Msa0143090 | MtrunA17_Chr2g0297231 | 52.381 | 210 | 92 | 4 | 1 | 207 | 1 | 205 | 1.25e-69 | 211 |
| Msa0143090 | MtrunA17_Chr3g0084531 | 52.358 | 212 | 95 | 3 | 3 | 211 | 1 | 209 | 2.33e-69 | 211 |
| Msa0143090 | MtrunA17_Chr2g0302541 | 55.208 | 192 | 82 | 2 | 23 | 211 | 19 | 209 | 4.58e-69 | 210 |
| Msa0143090 | MtrunA17_Chr2g0297241 | 50.698 | 215 | 94 | 4 | 1 | 210 | 1 | 208 | 1.16e-68 | 209 |
| Msa0143090 | MtrunA17_Chr4g0012651 | 55.851 | 188 | 79 | 2 | 27 | 211 | 23 | 209 | 8.15e-68 | 207 |
| Msa0143090 | MtrunA17_Chr3g0084521 | 51.402 | 214 | 95 | 4 | 1 | 211 | 1 | 208 | 1.93e-67 | 206 |
| Msa0143090 | MtrunA17_Chr5g0411961 | 51.402 | 214 | 96 | 4 | 1 | 211 | 1 | 209 | 3.75e-67 | 205 |
| Msa0143090 | MtrunA17_Chr3g0084511 | 50.935 | 214 | 96 | 4 | 1 | 211 | 1 | 208 | 7.15e-67 | 204 |
| Msa0143090 | MtrunA17_Chr8g0344051 | 50.000 | 216 | 99 | 5 | 1 | 211 | 1 | 212 | 3.07e-65 | 200 |
| Msa0143090 | MtrunA17_Chr8g0343911 | 46.078 | 204 | 104 | 4 | 13 | 211 | 6 | 208 | 4.51e-59 | 184 |
| Msa0143090 | MtrunA17_Chr8g0343921 | 46.602 | 206 | 104 | 5 | 11 | 211 | 3 | 207 | 2.49e-56 | 177 |
| Msa0143090 | MtrunA17_Chr2g0300561 | 42.130 | 216 | 114 | 5 | 1 | 211 | 1 | 210 | 1.30e-51 | 166 |
| Msa0143090 | MtrunA17_Chr2g0300581 | 41.204 | 216 | 116 | 5 | 1 | 211 | 1 | 210 | 2.81e-50 | 162 |
| Msa0143090 | MtrunA17_Chr2g0300591 | 41.204 | 216 | 116 | 5 | 1 | 211 | 1 | 210 | 7.70e-50 | 161 |
| Msa0143090 | MtrunA17_Chr3g0084551 | 43.192 | 213 | 107 | 5 | 3 | 211 | 1 | 203 | 7.97e-47 | 154 |
| Msa0143090 | MtrunA17_Chr1g0189841 | 37.327 | 217 | 126 | 4 | 1 | 207 | 1 | 217 | 1.48e-36 | 127 |
| Msa0143090 | MtrunA17_Chr6g0449761 | 33.641 | 217 | 132 | 6 | 1 | 207 | 1 | 215 | 4.78e-28 | 106 |
| Msa0143090 | MtrunA17_Chr6g0449771 | 33.641 | 217 | 132 | 6 | 1 | 207 | 1 | 215 | 6.35e-28 | 105 |
| Msa0143090 | MtrunA17_Chr1g0193421 | 33.511 | 188 | 117 | 5 | 27 | 207 | 29 | 215 | 1.08e-27 | 104 |
| Msa0143090 | MtrunA17_Chr6g0449751 | 34.259 | 216 | 132 | 5 | 1 | 207 | 1 | 215 | 1.55e-27 | 103 |
| Msa0143090 | MtrunA17_Chr6g0449731 | 33.641 | 217 | 132 | 6 | 1 | 207 | 1 | 215 | 2.11e-27 | 103 |
| Msa0143090 | MtrunA17_Chr1g0178711 | 31.455 | 213 | 135 | 5 | 6 | 207 | 9 | 221 | 8.04e-27 | 102 |
| Msa0143090 | MtrunA17_Chr4g0007041 | 33.180 | 217 | 132 | 6 | 1 | 206 | 1 | 215 | 6.57e-26 | 100 |
| Msa0143090 | MtrunA17_Chr4g0007051 | 33.180 | 217 | 132 | 6 | 1 | 206 | 1 | 215 | 8.94e-26 | 99.8 |
| Msa0143090 | MtrunA17_Chr4g0007031 | 33.180 | 217 | 132 | 6 | 1 | 206 | 1 | 215 | 1.15e-25 | 99.4 |
| Msa0143090 | MtrunA17_Chr5g0419971 | 33.180 | 217 | 132 | 6 | 1 | 206 | 1 | 215 | 1.15e-25 | 99.4 |
| Msa0143090 | MtrunA17_Chr5g0419981 | 33.180 | 217 | 132 | 6 | 1 | 206 | 1 | 215 | 1.15e-25 | 99.4 |
| Msa0143090 | MtrunA17_Chr2g0292831 | 34.536 | 194 | 114 | 5 | 23 | 207 | 23 | 212 | 2.66e-25 | 98.2 |
| Msa0143090 | MtrunA17_Chr1g0193671 | 30.952 | 210 | 137 | 5 | 4 | 206 | 5 | 213 | 2.80e-25 | 98.2 |
| Msa0143090 | MtrunA17_Chr8g0335851 | 34.320 | 169 | 94 | 3 | 42 | 206 | 47 | 202 | 5.17e-25 | 97.4 |
| Msa0143090 | MtrunA17_Chr2g0285871 | 32.719 | 217 | 133 | 6 | 1 | 206 | 1 | 215 | 5.23e-25 | 97.4 |
| Msa0143090 | MtrunA17_Chr2g0292901 | 32.663 | 199 | 121 | 5 | 18 | 207 | 19 | 213 | 5.24e-25 | 97.4 |
| Msa0143090 | MtrunA17_Chr1g0210761 | 32.258 | 186 | 113 | 7 | 28 | 207 | 29 | 207 | 5.33e-25 | 97.4 |
| Msa0143090 | MtrunA17_Chr6g0449791 | 35.955 | 178 | 105 | 4 | 1 | 170 | 1 | 177 | 9.15e-25 | 96.7 |
| Msa0143090 | MtrunA17_Chr1g0156131 | 32.474 | 194 | 115 | 5 | 23 | 207 | 23 | 209 | 3.06e-23 | 92.8 |
| Msa0143090 | MtrunA17_Chr5g0414971 | 30.526 | 190 | 123 | 6 | 28 | 209 | 33 | 221 | 5.78e-23 | 92.0 |
| Msa0143090 | MtrunA17_Chr3g0084501 | 46.429 | 112 | 48 | 4 | 1 | 107 | 1 | 105 | 6.11e-23 | 89.0 |
| Msa0143090 | MtrunA17_Chr7g0271211 | 31.915 | 188 | 120 | 5 | 27 | 207 | 25 | 211 | 6.04e-22 | 89.4 |
| Msa0143090 | MtrunA17_Chr2g0321591 | 35.404 | 161 | 98 | 4 | 52 | 207 | 45 | 204 | 8.45e-22 | 89.0 |
| Msa0143090 | MtrunA17_Chr3g0130241 | 33.880 | 183 | 105 | 5 | 1 | 170 | 63 | 242 | 9.46e-22 | 90.5 |
| Msa0143090 | MtrunA17_Chr4g0026201 | 36.691 | 139 | 86 | 2 | 71 | 207 | 67 | 205 | 1.25e-21 | 88.2 |
| Msa0143090 | MtrunA17_Chr2g0321581 | 34.783 | 161 | 99 | 4 | 52 | 207 | 45 | 204 | 3.46e-21 | 87.0 |
| Msa0143090 | MtrunA17_Chr4g0026191 | 35.971 | 139 | 87 | 2 | 71 | 207 | 67 | 205 | 4.89e-21 | 86.7 |
| Msa0143090 | MtrunA17_Chr2g0292861 | 33.140 | 172 | 105 | 5 | 46 | 207 | 7 | 178 | 1.44e-20 | 84.7 |
| Msa0143090 | MtrunA17_Chr2g0321601 | 35.000 | 140 | 87 | 4 | 71 | 207 | 65 | 203 | 5.51e-20 | 84.0 |
| Msa0143090 | MtrunA17_Chr6g0449781 | 31.383 | 188 | 120 | 5 | 28 | 207 | 28 | 214 | 1.90e-19 | 82.8 |
| Msa0143090 | MtrunA17_Chr2g0292841 | 31.977 | 172 | 107 | 5 | 46 | 207 | 7 | 178 | 3.57e-18 | 78.6 |
| Msa0143090 | MtrunA17_Chr2g0327651 | 38.614 | 101 | 60 | 1 | 47 | 145 | 7 | 107 | 8.64e-17 | 73.2 |
| Msa0143090 | MtrunA17_Chr2g0292911 | 37.607 | 117 | 66 | 3 | 46 | 155 | 7 | 123 | 6.89e-16 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143090 | AT1G72610.1 | 47.423 | 194 | 96 | 4 | 23 | 211 | 16 | 208 | 1.58e-59 | 186 |
| Msa0143090 | AT5G20630.1 | 43.192 | 213 | 113 | 5 | 3 | 210 | 1 | 210 | 1.31e-50 | 163 |
| Msa0143090 | AT5G39160.3 | 34.703 | 219 | 127 | 6 | 1 | 207 | 1 | 215 | 1.15e-34 | 122 |
| Msa0143090 | AT5G39110.1 | 36.916 | 214 | 124 | 5 | 6 | 208 | 8 | 221 | 5.14e-34 | 121 |
| Msa0143090 | AT5G39190.1 | 34.247 | 219 | 132 | 5 | 1 | 207 | 1 | 219 | 1.07e-33 | 120 |
| Msa0143090 | AT5G39160.1 | 34.247 | 219 | 132 | 5 | 1 | 207 | 1 | 219 | 1.08e-33 | 120 |
| Msa0143090 | AT5G39120.1 | 35.714 | 224 | 122 | 7 | 1 | 208 | 3 | 220 | 1.19e-33 | 120 |
| Msa0143090 | AT5G39130.1 | 33.333 | 219 | 134 | 5 | 1 | 207 | 1 | 219 | 6.87e-33 | 118 |
| Msa0143090 | AT5G39180.1 | 35.268 | 224 | 123 | 7 | 1 | 208 | 3 | 220 | 1.74e-32 | 117 |
| Msa0143090 | AT5G39150.1 | 35.268 | 224 | 123 | 7 | 1 | 208 | 3 | 220 | 5.01e-32 | 116 |
| Msa0143090 | AT4G14630.1 | 34.597 | 211 | 127 | 5 | 8 | 207 | 12 | 222 | 2.30e-31 | 114 |
| Msa0143090 | AT3G05950.1 | 35.714 | 210 | 121 | 5 | 12 | 207 | 12 | 221 | 8.90e-31 | 113 |
| Msa0143090 | AT1G02335.1 | 31.429 | 210 | 134 | 6 | 6 | 207 | 8 | 215 | 1.31e-30 | 112 |
| Msa0143090 | AT3G04190.1 | 34.021 | 194 | 118 | 4 | 24 | 207 | 28 | 221 | 1.71e-30 | 112 |
| Msa0143090 | AT5G38960.1 | 36.923 | 195 | 112 | 5 | 24 | 207 | 28 | 222 | 9.26e-30 | 110 |
| Msa0143090 | AT5G39160.2 | 31.628 | 215 | 121 | 4 | 1 | 207 | 1 | 197 | 1.26e-29 | 109 |
| Msa0143090 | AT5G39190.2 | 31.628 | 215 | 121 | 4 | 1 | 207 | 1 | 197 | 1.35e-29 | 109 |
| Msa0143090 | AT1G09560.1 | 35.678 | 199 | 115 | 6 | 22 | 208 | 19 | 216 | 1.97e-29 | 109 |
| Msa0143090 | AT5G26700.1 | 33.173 | 208 | 129 | 6 | 5 | 207 | 7 | 209 | 5.46e-29 | 108 |
| Msa0143090 | AT3G04200.1 | 33.953 | 215 | 122 | 5 | 8 | 207 | 13 | 222 | 5.66e-29 | 108 |
| Msa0143090 | AT1G18970.1 | 35.149 | 202 | 125 | 5 | 11 | 207 | 18 | 218 | 1.16e-28 | 107 |
| Msa0143090 | AT3G05930.1 | 33.178 | 214 | 131 | 7 | 3 | 207 | 5 | 215 | 1.97e-28 | 106 |
| Msa0143090 | AT1G18980.1 | 37.097 | 186 | 109 | 6 | 28 | 207 | 35 | 218 | 2.06e-28 | 106 |
| Msa0143090 | AT3G04180.1 | 33.333 | 201 | 110 | 5 | 24 | 207 | 28 | 221 | 2.48e-28 | 106 |
| Msa0143090 | AT3G04150.1 | 30.769 | 195 | 125 | 4 | 27 | 211 | 31 | 225 | 1.42e-27 | 104 |
| Msa0143090 | AT3G04170.1 | 31.905 | 210 | 130 | 5 | 8 | 207 | 12 | 218 | 6.46e-27 | 103 |
| Msa0143090 | AT5G38940.1 | 35.385 | 195 | 116 | 5 | 24 | 208 | 28 | 222 | 7.84e-26 | 100 |
| Msa0143090 | AT5G38940.2 | 35.385 | 195 | 116 | 5 | 24 | 208 | 52 | 246 | 1.13e-25 | 100 |
| Msa0143090 | AT3G62020.1 | 31.746 | 189 | 120 | 6 | 27 | 207 | 28 | 215 | 7.45e-25 | 97.4 |
| Msa0143090 | AT3G10080.1 | 33.511 | 188 | 117 | 3 | 28 | 207 | 32 | 219 | 7.56e-25 | 97.8 |
| Msa0143090 | AT3G04150.2 | 30.682 | 176 | 112 | 4 | 46 | 211 | 63 | 238 | 9.72e-25 | 97.8 |
| Msa0143090 | AT3G10080.2 | 33.511 | 188 | 117 | 3 | 28 | 207 | 103 | 290 | 1.55e-24 | 98.6 |
| Msa0143090 | AT5G38910.1 | 33.649 | 211 | 130 | 5 | 7 | 207 | 9 | 219 | 1.85e-24 | 96.7 |
| Msa0143090 | AT5G61750.1 | 34.503 | 171 | 104 | 5 | 6 | 170 | 5 | 173 | 1.97e-24 | 96.3 |
| Msa0143090 | AT3G62020.2 | 32.184 | 174 | 110 | 5 | 42 | 207 | 13 | 186 | 2.67e-24 | 95.5 |
| Msa0143090 | AT5G38930.1 | 33.846 | 195 | 119 | 5 | 24 | 208 | 28 | 222 | 5.94e-23 | 92.4 |
| Msa0143090 | AT1G74820.1 | 31.776 | 214 | 133 | 6 | 6 | 207 | 13 | 225 | 6.04e-22 | 90.1 |
| Msa0143090 | AT1G10460.1 | 29.897 | 194 | 125 | 7 | 27 | 209 | 24 | 217 | 2.06e-20 | 85.9 |
| Msa0143090 | AT5G38910.2 | 29.327 | 208 | 106 | 5 | 7 | 207 | 9 | 182 | 5.47e-13 | 65.1 |
Find 37 sgRNAs with CRISPR-Local
Find 41 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGCTTAAGGCTAAGTTTA+AGG | 0.120944 | 1_4:-1995358 | Msa0143090:CDS |
| TCTTAAGCCTACTGATATTA+TGG | 0.242052 | 1_4:-1995559 | Msa0143090:CDS |
| GTGAATGATTTCGTGTTATC+TGG | 0.259765 | 1_4:-1995810 | Msa0143090:CDS |
| ACAAAATGCAATAGTCCTTT+TGG | 0.270307 | 1_4:+1995531 | None:intergenic |
| AAAGCTTTGTTTAAGCTTCC+AGG | 0.294960 | 1_4:+1995780 | None:intergenic |
| TTTCTTGATTCTGTATTGTT+TGG | 0.320257 | 1_4:-1995441 | Msa0143090:CDS |
| AAGCTTAAGGCTAAGTTTAA+GGG | 0.375783 | 1_4:-1995357 | Msa0143090:CDS |
| GATTTCGTGTTATCTGGCTT+TGG | 0.389146 | 1_4:-1995804 | Msa0143090:CDS |
| TAATTCAGTAACTGATGCTT+TGG | 0.397550 | 1_4:+1995743 | None:intergenic |
| TTCACAGATCAAGAAGCTTA+AGG | 0.430319 | 1_4:-1995370 | Msa0143090:CDS |
| GTGTTATCTGGCTTTGGACC+TGG | 0.438197 | 1_4:-1995798 | Msa0143090:CDS |
| TGCATTGGAACAGATCCATT+TGG | 0.439588 | 1_4:+1995672 | None:intergenic |
| ATTAGTAATTCAGTTGCATC+AGG | 0.439691 | 1_4:+1995642 | None:intergenic |
| AGAGTAGACATTGGTCCAAA+TGG | 0.456817 | 1_4:-1995687 | Msa0143090:CDS |
| CTTTGACATAAACTTCTGTA+AGG | 0.459348 | 1_4:+1995583 | None:intergenic |
| TTTGTAGTTAACTCTGGTGC+TGG | 0.460867 | 1_4:-1995513 | Msa0143090:CDS |
| TGCAACTGAATTACTAATCA+TGG | 0.474013 | 1_4:-1995637 | Msa0143090:CDS |
| AAAACTCGAGATTCGCCTTC+AGG | 0.477822 | 1_4:-1995855 | Msa0143090:CDS |
| AAGGCTAAGTTTAAGGGCAC+TGG | 0.487685 | 1_4:-1995351 | Msa0143090:CDS |
| GTCTTTGCAATTATAGAAGT+AGG | 0.493739 | 1_4:+1995408 | None:intergenic |
| GTTTGCTACACAGAAATCAT+TGG | 0.495061 | 1_4:+1995884 | None:intergenic |
| CATTGGCAGAAGATGAAACA+TGG | 0.504978 | 1_4:+1995901 | None:intergenic |
| GAATCAAGAAACTGAAAGCT+AGG | 0.508983 | 1_4:+1995453 | None:intergenic |
| TTCACCGTTGGTGATTTGCA+TGG | 0.518005 | 1_4:+1995828 | None:intergenic |
| TAAGTTTAAGGGCACTGGCT+AGG | 0.526606 | 1_4:-1995346 | None:intergenic |
| GTTCAAGGTAGAGTTACAGC+TGG | 0.531322 | 1_4:-1995615 | Msa0143090:CDS |
| ACTGAATTACCAAGTCTCAA+TGG | 0.535559 | 1_4:-1995729 | Msa0143090:CDS |
| GAATTACTAATCATGGTTCA+AGG | 0.537186 | 1_4:-1995630 | Msa0143090:CDS |
| GGGAGGTGTATGATGATATG+AGG | 0.543192 | 1_4:+1995922 | None:intergenic |
| GCATCAGGATGAGTATGCAT+TGG | 0.555789 | 1_4:+1995657 | None:intergenic |
| ATATCAAGTCCATTGAGACT+TGG | 0.613542 | 1_4:+1995720 | None:intergenic |
| AACACGAAATCATTCACCGT+TGG | 0.627838 | 1_4:+1995816 | None:intergenic |
| ATTGGCAGAAGATGAAACAT+GGG | 0.653550 | 1_4:+1995902 | None:intergenic |
| GGCAGAAGATGAAACATGGG+AGG | 0.675496 | 1_4:+1995905 | None:intergenic |
| TCTGCAGCAAGAGTAGACAT+TGG | 0.676542 | 1_4:-1995696 | Msa0143090:CDS |
| CTATCCATGCAAATCACCAA+CGG | 0.680168 | 1_4:-1995832 | Msa0143090:CDS |
| GATTTGCATGGATAGCCTGA+AGG | 0.705863 | 1_4:+1995840 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATTATGGTTTTTCCAAA+AGG | - | chr1_4:1995761-1995780 | Msa0143090:CDS | 25.0% |
| ! | TTTCTTGATTCTGTATTGTT+TGG | - | chr1_4:1995866-1995885 | Msa0143090:CDS | 25.0% |
| TAATTCAGTAACTGATGCTT+TGG | + | chr1_4:1995567-1995586 | None:intergenic | 30.0% | |
| ATTAGTAATTCAGTTGCATC+AGG | + | chr1_4:1995668-1995687 | None:intergenic | 30.0% | |
| TGCAACTGAATTACTAATCA+TGG | - | chr1_4:1995670-1995689 | Msa0143090:CDS | 30.0% | |
| GAATTACTAATCATGGTTCA+AGG | - | chr1_4:1995677-1995696 | Msa0143090:CDS | 30.0% | |
| CTTTGACATAAACTTCTGTA+AGG | + | chr1_4:1995727-1995746 | None:intergenic | 30.0% | |
| TCTTAAGCCTACTGATATTA+TGG | - | chr1_4:1995748-1995767 | Msa0143090:CDS | 30.0% | |
| GGAAAAACCATAATATCAGT+AGG | + | chr1_4:1995758-1995777 | None:intergenic | 30.0% | |
| ! | ACAAAATGCAATAGTCCTTT+TGG | + | chr1_4:1995779-1995798 | None:intergenic | 30.0% |
| ! | TTGCATTTTGTAGTTAACTC+TGG | - | chr1_4:1995788-1995807 | Msa0143090:CDS | 30.0% |
| GTCTTTGCAATTATAGAAGT+AGG | + | chr1_4:1995902-1995921 | None:intergenic | 30.0% | |
| AAGCTTAAGGCTAAGTTTAA+GGG | - | chr1_4:1995950-1995969 | Msa0143090:CDS | 30.0% | |
| TGATATGAGGAGAGCAAAAA+AGG | + | chr1_4:1995375-1995394 | None:intergenic | 35.0% | |
| ATTGGCAGAAGATGAAACAT+GGG | + | chr1_4:1995408-1995427 | None:intergenic | 35.0% | |
| ! | GTTTGCTACACAGAAATCAT+TGG | + | chr1_4:1995426-1995445 | None:intergenic | 35.0% |
| GTGAATGATTTCGTGTTATC+TGG | - | chr1_4:1995497-1995516 | Msa0143090:CDS | 35.0% | |
| !! | AAAGCTTTGTTTAAGCTTCC+AGG | + | chr1_4:1995530-1995549 | None:intergenic | 35.0% |
| ACTGAATTACCAAGTCTCAA+TGG | - | chr1_4:1995578-1995597 | Msa0143090:CDS | 35.0% | |
| ATATCAAGTCCATTGAGACT+TGG | + | chr1_4:1995590-1995609 | None:intergenic | 35.0% | |
| GAATCAAGAAACTGAAAGCT+AGG | + | chr1_4:1995857-1995876 | None:intergenic | 35.0% | |
| TTCACAGATCAAGAAGCTTA+AGG | - | chr1_4:1995937-1995956 | Msa0143090:CDS | 35.0% | |
| GAAGCTTAAGGCTAAGTTTA+AGG | - | chr1_4:1995949-1995968 | Msa0143090:CDS | 35.0% | |
| CATTGGCAGAAGATGAAACA+TGG | + | chr1_4:1995409-1995428 | None:intergenic | 40.0% | |
| CTATCCATGCAAATCACCAA+CGG | - | chr1_4:1995475-1995494 | Msa0143090:CDS | 40.0% | |
| AACACGAAATCATTCACCGT+TGG | + | chr1_4:1995494-1995513 | None:intergenic | 40.0% | |
| ! | GATTTCGTGTTATCTGGCTT+TGG | - | chr1_4:1995503-1995522 | Msa0143090:CDS | 40.0% |
| AGAGTAGACATTGGTCCAAA+TGG | - | chr1_4:1995620-1995639 | Msa0143090:CDS | 40.0% | |
| TGCATTGGAACAGATCCATT+TGG | + | chr1_4:1995638-1995657 | None:intergenic | 40.0% | |
| TTTGTAGTTAACTCTGGTGC+TGG | - | chr1_4:1995794-1995813 | Msa0143090:CDS | 40.0% | |
| ! | GGGAGGTGTATGATGATATG+AGG | + | chr1_4:1995388-1995407 | None:intergenic | 45.0% |
| !! | GCGAATCTCGAGTTTTGTGT+AGG | + | chr1_4:1995448-1995467 | None:intergenic | 45.0% |
| AAAACTCGAGATTCGCCTTC+AGG | - | chr1_4:1995452-1995471 | Msa0143090:CDS | 45.0% | |
| GATTTGCATGGATAGCCTGA+AGG | + | chr1_4:1995470-1995489 | None:intergenic | 45.0% | |
| !! | TTCACCGTTGGTGATTTGCA+TGG | + | chr1_4:1995482-1995501 | None:intergenic | 45.0% |
| TCTGCAGCAAGAGTAGACAT+TGG | - | chr1_4:1995611-1995630 | Msa0143090:CDS | 45.0% | |
| GCATCAGGATGAGTATGCAT+TGG | + | chr1_4:1995653-1995672 | None:intergenic | 45.0% | |
| GTTCAAGGTAGAGTTACAGC+TGG | - | chr1_4:1995692-1995711 | Msa0143090:CDS | 45.0% | |
| ! | AAGGCTAAGTTTAAGGGCAC+TGG | - | chr1_4:1995956-1995975 | Msa0143090:CDS | 45.0% |
| GGCAGAAGATGAAACATGGG+AGG | + | chr1_4:1995405-1995424 | None:intergenic | 50.0% | |
| !! | GTGTTATCTGGCTTTGGACC+TGG | - | chr1_4:1995509-1995528 | Msa0143090:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 1995347 | 1995982 | 1995347 | ID=Msa0143090;Name=Msa0143090 |
| chr1_4 | mRNA | 1995347 | 1995982 | 1995347 | ID=Msa0143090-mRNA-1;Parent=Msa0143090;Name=Msa0143090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|211 |
| chr1_4 | exon | 1995347 | 1995982 | 1995347 | ID=Msa0143090-mRNA-1:exon:780;Parent=Msa0143090-mRNA-1 |
| chr1_4 | CDS | 1995347 | 1995982 | 1995347 | ID=Msa0143090-mRNA-1:cds;Parent=Msa0143090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
