Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0143860 | sp|Q9SV15|WRK11_ARATH | 59.551 | 356 | 98 | 12 | 1 | 342 | 1 | 324 | 1.84e-126 | 368 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0143860 | A0A072VCI7 | 97.376 | 343 | 6 | 2 | 1 | 343 | 1 | 340 | 0.0 | 680 |
Gene ID | Type | Classification |
---|---|---|
Msa0143860 | TF | WRKY |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0143830 | Msa0143860 | 0.809639 | 1.712823e-50 | -8.615850e-47 |
Msa0143860 | Msa0732040 | 0.807534 | 4.824033e-50 | -8.615850e-47 |
Msa0143860 | Msa0773020 | 0.816369 | 5.731160e-52 | -8.615850e-47 |
Msa0143860 | Msa1452610 | 0.943714 | 7.310847e-103 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0143860 | MtrunA17_Chr1g0147881 | 97.376 | 343 | 6 | 2 | 1 | 343 | 1 | 340 | 0.0 | 680 |
Msa0143860 | MtrunA17_Chr4g0071521 | 50.427 | 351 | 96 | 10 | 1 | 322 | 1 | 302 | 2.87e-88 | 268 |
Msa0143860 | MtrunA17_Chr4g0053281 | 39.899 | 396 | 127 | 13 | 1 | 343 | 1 | 338 | 6.05e-67 | 214 |
Msa0143860 | MtrunA17_Chr3g0139021 | 63.415 | 164 | 52 | 5 | 170 | 331 | 222 | 379 | 8.08e-62 | 202 |
Msa0143860 | MtrunA17_Chr5g0401821 | 58.394 | 137 | 50 | 2 | 208 | 343 | 141 | 271 | 9.44e-52 | 172 |
Msa0143860 | MtrunA17_Chr7g0228941 | 65.823 | 79 | 27 | 0 | 244 | 322 | 31 | 109 | 6.76e-35 | 124 |
Msa0143860 | MtrunA17_Chr2g0293481 | 57.955 | 88 | 32 | 2 | 240 | 322 | 237 | 324 | 5.88e-29 | 116 |
Msa0143860 | MtrunA17_Chr7g0248691 | 62.195 | 82 | 26 | 2 | 241 | 322 | 135 | 211 | 1.51e-28 | 112 |
Msa0143860 | MtrunA17_Chr2g0284321 | 54.762 | 84 | 37 | 1 | 242 | 324 | 11 | 94 | 9.28e-28 | 108 |
Msa0143860 | MtrunA17_Chr8g0379461 | 52.809 | 89 | 35 | 1 | 241 | 322 | 45 | 133 | 6.12e-27 | 106 |
Msa0143860 | MtrunA17_Chr2g0319961 | 55.556 | 90 | 34 | 2 | 241 | 324 | 50 | 139 | 1.55e-26 | 105 |
Msa0143860 | MtrunA17_Chr7g0270051 | 51.136 | 88 | 38 | 1 | 240 | 322 | 23 | 110 | 3.24e-26 | 105 |
Msa0143860 | MtrunA17_Chr8g0348311 | 58.537 | 82 | 29 | 1 | 241 | 322 | 136 | 212 | 9.42e-26 | 105 |
Msa0143860 | MtrunA17_Chr4g0042831 | 50.505 | 99 | 37 | 3 | 240 | 327 | 242 | 339 | 6.00e-23 | 98.6 |
Msa0143860 | MtrunA17_Chr4g0042831 | 50.877 | 57 | 27 | 1 | 266 | 322 | 146 | 201 | 9.12e-11 | 62.8 |
Msa0143860 | MtrunA17_Chr5g0418191 | 57.317 | 82 | 31 | 2 | 249 | 327 | 301 | 381 | 9.55e-23 | 98.6 |
Msa0143860 | MtrunA17_Chr5g0418191 | 50.725 | 69 | 31 | 3 | 257 | 324 | 142 | 208 | 4.34e-13 | 69.7 |
Msa0143860 | MtrunA17_Chr3g0106491 | 40.690 | 145 | 74 | 4 | 192 | 326 | 283 | 425 | 1.91e-22 | 98.2 |
Msa0143860 | MtrunA17_Chr3g0106491 | 50.000 | 68 | 32 | 2 | 266 | 333 | 199 | 264 | 1.74e-12 | 68.2 |
Msa0143860 | MtrunA17_Chr2g0289181 | 59.375 | 64 | 26 | 0 | 259 | 322 | 8 | 71 | 5.53e-22 | 92.8 |
Msa0143860 | MtrunA17_Chr5g0445311 | 52.381 | 84 | 36 | 2 | 247 | 327 | 343 | 425 | 6.06e-22 | 96.7 |
Msa0143860 | MtrunA17_Chr1g0202461 | 50.000 | 80 | 39 | 1 | 244 | 322 | 239 | 318 | 6.48e-22 | 95.5 |
Msa0143860 | MtrunA17_Chr3g0101131 | 46.667 | 105 | 46 | 4 | 241 | 337 | 383 | 485 | 3.09e-21 | 94.7 |
Msa0143860 | MtrunA17_Chr7g0270191 | 36.986 | 146 | 80 | 5 | 181 | 322 | 64 | 201 | 5.31e-21 | 91.7 |
Msa0143860 | MtrunA17_Chr7g0218081 | 53.012 | 83 | 35 | 2 | 248 | 327 | 390 | 471 | 5.97e-21 | 93.6 |
Msa0143860 | MtrunA17_Chr7g0218081 | 47.059 | 85 | 39 | 4 | 257 | 337 | 219 | 301 | 7.75e-14 | 72.4 |
Msa0143860 | MtrunA17_Chr5g0432161 | 56.098 | 82 | 32 | 2 | 249 | 327 | 402 | 482 | 7.41e-21 | 93.6 |
Msa0143860 | MtrunA17_Chr5g0432161 | 54.386 | 57 | 24 | 2 | 266 | 322 | 245 | 299 | 6.88e-12 | 66.6 |
Msa0143860 | MtrunA17_Chr4g0051881 | 44.706 | 85 | 46 | 1 | 252 | 336 | 165 | 248 | 9.98e-21 | 91.7 |
Msa0143860 | MtrunA17_Chr4g0004911 | 53.165 | 79 | 33 | 2 | 249 | 324 | 317 | 394 | 1.05e-20 | 92.8 |
Msa0143860 | MtrunA17_Chr4g0004911 | 50.877 | 57 | 27 | 1 | 266 | 322 | 185 | 240 | 5.73e-12 | 66.6 |
Msa0143860 | MtrunA17_Chr3g0079691 | 52.439 | 82 | 38 | 1 | 246 | 327 | 476 | 556 | 1.76e-20 | 92.8 |
Msa0143860 | MtrunA17_Chr3g0079691 | 54.386 | 57 | 24 | 2 | 266 | 322 | 281 | 335 | 1.85e-12 | 68.6 |
Msa0143860 | MtrunA17_Chr8g0387501 | 61.404 | 57 | 22 | 0 | 266 | 322 | 130 | 186 | 3.41e-20 | 89.0 |
Msa0143860 | MtrunA17_Chr7g0249301 | 49.398 | 83 | 38 | 2 | 248 | 327 | 272 | 353 | 5.41e-20 | 90.1 |
Msa0143860 | MtrunA17_Chr7g0249301 | 54.386 | 57 | 24 | 2 | 266 | 322 | 63 | 117 | 3.17e-12 | 67.0 |
Msa0143860 | MtrunA17_Chr7g0249311 | 48.421 | 95 | 46 | 2 | 246 | 338 | 373 | 466 | 6.10e-20 | 90.9 |
Msa0143860 | MtrunA17_Chr7g0249311 | 50.000 | 68 | 29 | 3 | 255 | 322 | 172 | 234 | 3.80e-12 | 67.4 |
Msa0143860 | MtrunA17_Chr2g0322391 | 47.561 | 82 | 43 | 0 | 249 | 330 | 333 | 414 | 6.28e-20 | 90.9 |
Msa0143860 | MtrunA17_Chr7g0243891 | 41.732 | 127 | 56 | 5 | 204 | 327 | 324 | 435 | 9.29e-20 | 90.1 |
Msa0143860 | MtrunA17_Chr7g0243891 | 54.386 | 57 | 24 | 2 | 266 | 322 | 217 | 271 | 5.74e-11 | 63.5 |
Msa0143860 | MtrunA17_Chr7g0263531 | 51.471 | 68 | 32 | 1 | 257 | 324 | 353 | 419 | 1.77e-19 | 89.0 |
Msa0143860 | MtrunA17_Chr7g0263531 | 47.619 | 84 | 41 | 3 | 257 | 339 | 180 | 261 | 4.44e-16 | 79.0 |
Msa0143860 | MtrunA17_Chr2g0288871 | 48.649 | 74 | 38 | 0 | 249 | 322 | 289 | 362 | 2.92e-19 | 89.0 |
Msa0143860 | MtrunA17_Chr7g0270831 | 40.426 | 141 | 58 | 7 | 189 | 322 | 152 | 273 | 3.44e-19 | 88.2 |
Msa0143860 | MtrunA17_Chr5g0443131 | 45.679 | 81 | 43 | 1 | 252 | 332 | 144 | 223 | 9.85e-19 | 85.5 |
Msa0143860 | MtrunA17_Chr7g0238921 | 38.261 | 115 | 64 | 4 | 210 | 322 | 71 | 180 | 1.06e-18 | 85.5 |
Msa0143860 | MtrunA17_Chr3g0126391 | 38.667 | 150 | 62 | 9 | 199 | 337 | 70 | 200 | 1.12e-18 | 85.9 |
Msa0143860 | MtrunA17_Chr4g0075201 | 48.649 | 74 | 38 | 0 | 249 | 322 | 251 | 324 | 1.29e-18 | 86.7 |
Msa0143860 | MtrunA17_Chr3g0099641 | 43.421 | 76 | 43 | 0 | 249 | 324 | 235 | 310 | 1.97e-18 | 85.9 |
Msa0143860 | MtrunA17_Chr1g0194481 | 43.529 | 85 | 45 | 2 | 240 | 322 | 131 | 214 | 2.04e-18 | 84.7 |
Msa0143860 | MtrunA17_Chr3g0136961 | 48.611 | 72 | 37 | 0 | 251 | 322 | 124 | 195 | 2.39e-18 | 84.0 |
Msa0143860 | MtrunA17_Chr4g0001361 | 53.846 | 65 | 30 | 0 | 258 | 322 | 155 | 219 | 2.62e-18 | 84.3 |
Msa0143860 | MtrunA17_Chr1g0150801 | 50.704 | 71 | 34 | 1 | 252 | 322 | 89 | 158 | 2.67e-18 | 80.9 |
Msa0143860 | MtrunA17_Chr4g0025061 | 53.731 | 67 | 31 | 0 | 266 | 332 | 361 | 427 | 3.34e-18 | 85.9 |
Msa0143860 | MtrunA17_Chr2g0333851 | 44.048 | 84 | 43 | 1 | 239 | 322 | 147 | 226 | 3.97e-18 | 84.0 |
Msa0143860 | MtrunA17_Chr4g0051181 | 39.796 | 98 | 40 | 1 | 244 | 322 | 203 | 300 | 5.87e-18 | 84.7 |
Msa0143860 | MtrunA17_Chr7g0216891 | 46.988 | 83 | 36 | 2 | 246 | 326 | 204 | 280 | 6.96e-18 | 84.7 |
Msa0143860 | MtrunA17_Chr1g0150281 | 52.632 | 57 | 27 | 0 | 266 | 322 | 141 | 197 | 7.47e-18 | 82.4 |
Msa0143860 | MtrunA17_Chr2g0294231 | 45.333 | 75 | 40 | 1 | 248 | 322 | 186 | 259 | 1.06e-17 | 83.2 |
Msa0143860 | MtrunA17_Chr3g0129361 | 45.783 | 83 | 41 | 2 | 251 | 330 | 127 | 208 | 1.15e-17 | 80.9 |
Msa0143860 | MtrunA17_Chr8g0383351 | 48.052 | 77 | 35 | 2 | 251 | 323 | 142 | 217 | 1.27e-17 | 80.9 |
Msa0143860 | MtrunA17_Chr5g0418781 | 43.902 | 82 | 45 | 1 | 241 | 322 | 100 | 180 | 1.54e-17 | 81.6 |
Msa0143860 | MtrunA17_Chr8g0335811 | 45.783 | 83 | 41 | 2 | 244 | 323 | 130 | 211 | 1.96e-17 | 80.1 |
Msa0143860 | MtrunA17_Chr8g0383251 | 43.182 | 88 | 44 | 2 | 242 | 324 | 80 | 166 | 3.39e-17 | 78.6 |
Msa0143860 | MtrunA17_Chr4g0074001 | 57.895 | 57 | 23 | 1 | 266 | 322 | 360 | 415 | 3.45e-17 | 82.4 |
Msa0143860 | MtrunA17_Chr7g0248721 | 31.056 | 161 | 94 | 5 | 184 | 329 | 45 | 203 | 4.17e-17 | 79.0 |
Msa0143860 | MtrunA17_Chr4g0060271 | 52.542 | 59 | 28 | 0 | 266 | 324 | 256 | 314 | 9.43e-17 | 81.3 |
Msa0143860 | MtrunA17_Chr7g0275531 | 43.529 | 85 | 44 | 2 | 240 | 320 | 91 | 175 | 1.10e-16 | 79.7 |
Msa0143860 | MtrunA17_Chr7g0224801 | 49.231 | 65 | 32 | 1 | 261 | 325 | 89 | 152 | 1.84e-16 | 76.3 |
Msa0143860 | MtrunA17_Chr1g0188941 | 44.578 | 83 | 45 | 1 | 246 | 328 | 32 | 113 | 2.35e-16 | 74.3 |
Msa0143860 | MtrunA17_Chr2g0302391 | 52.542 | 59 | 28 | 0 | 266 | 324 | 212 | 270 | 2.58e-16 | 79.7 |
Msa0143860 | MtrunA17_Chr4g0068541 | 44.595 | 74 | 40 | 1 | 249 | 322 | 192 | 264 | 2.58e-16 | 79.3 |
Msa0143860 | MtrunA17_Chr3g0129321 | 45.000 | 80 | 43 | 1 | 243 | 322 | 96 | 174 | 2.94e-16 | 76.6 |
Msa0143860 | MtrunA17_Chr5g0447701 | 49.296 | 71 | 35 | 1 | 252 | 322 | 239 | 308 | 3.45e-16 | 79.0 |
Msa0143860 | MtrunA17_Chr4g0025051 | 50.746 | 67 | 33 | 0 | 266 | 332 | 336 | 402 | 4.80e-16 | 79.3 |
Msa0143860 | MtrunA17_Chr1g0150271 | 46.774 | 62 | 33 | 0 | 263 | 324 | 99 | 160 | 2.49e-15 | 74.7 |
Msa0143860 | MtrunA17_Chr5g0402931 | 60.345 | 58 | 20 | 2 | 265 | 322 | 123 | 177 | 3.48e-15 | 72.8 |
Msa0143860 | MtrunA17_Chr8g0347251 | 41.573 | 89 | 49 | 2 | 238 | 323 | 108 | 196 | 6.22e-15 | 74.7 |
Msa0143860 | MtrunA17_Chr6g0485431 | 49.254 | 67 | 32 | 2 | 266 | 331 | 155 | 220 | 8.88e-15 | 74.7 |
Msa0143860 | MtrunA17_Chr1g0189391 | 58.065 | 62 | 24 | 2 | 262 | 322 | 94 | 154 | 1.12e-14 | 73.9 |
Msa0143860 | MtrunA17_Chr8g0386241 | 39.706 | 68 | 40 | 1 | 262 | 329 | 100 | 166 | 1.10e-13 | 68.6 |
Msa0143860 | MtrunA17_Chr8g0387981 | 36.538 | 104 | 52 | 4 | 228 | 320 | 89 | 189 | 1.32e-13 | 70.9 |
Msa0143860 | MtrunA17_Chr5g0428351 | 42.857 | 84 | 39 | 3 | 239 | 320 | 164 | 240 | 2.03e-12 | 67.0 |
Msa0143860 | MtrunA17_Chr4g0024391 | 42.169 | 83 | 46 | 1 | 248 | 330 | 214 | 294 | 5.29e-12 | 66.6 |
Msa0143860 | MtrunA17_Chr2g0315361 | 35.294 | 102 | 64 | 1 | 221 | 320 | 104 | 205 | 1.12e-11 | 64.7 |
Msa0143860 | MtrunA17_Chr3g0128671 | 40.244 | 82 | 39 | 2 | 241 | 320 | 111 | 184 | 2.03e-11 | 63.9 |
Msa0143860 | MtrunA17_Chr7g0244981 | 36.842 | 95 | 56 | 3 | 229 | 320 | 86 | 179 | 3.55e-11 | 63.2 |
Msa0143860 | MtrunA17_Chr2g0315381 | 38.667 | 75 | 44 | 1 | 248 | 320 | 127 | 201 | 6.74e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0143860 | AT4G31550.1 | 59.551 | 356 | 98 | 12 | 1 | 342 | 1 | 324 | 1.87e-127 | 368 |
Msa0143860 | AT4G31550.2 | 59.551 | 356 | 97 | 13 | 1 | 342 | 1 | 323 | 1.70e-126 | 365 |
Msa0143860 | AT2G24570.1 | 59.659 | 352 | 100 | 14 | 1 | 342 | 1 | 320 | 1.24e-117 | 343 |
Msa0143860 | AT4G31550.3 | 55.556 | 297 | 88 | 11 | 1 | 285 | 1 | 265 | 2.70e-90 | 271 |
Msa0143860 | AT4G24240.1 | 43.296 | 358 | 151 | 13 | 1 | 324 | 1 | 340 | 5.24e-68 | 217 |
Msa0143860 | AT2G23320.1 | 38.701 | 354 | 132 | 10 | 1 | 324 | 1 | 299 | 2.03e-62 | 202 |
Msa0143860 | AT3G04670.1 | 37.500 | 344 | 160 | 11 | 11 | 323 | 1 | 320 | 2.98e-56 | 186 |
Msa0143860 | AT2G30590.1 | 54.971 | 171 | 68 | 4 | 154 | 322 | 207 | 370 | 1.92e-55 | 186 |
Msa0143860 | AT5G28650.1 | 36.232 | 345 | 163 | 12 | 11 | 323 | 1 | 320 | 4.26e-51 | 173 |
Msa0143860 | AT2G23320.2 | 34.603 | 315 | 121 | 12 | 1 | 285 | 1 | 260 | 4.77e-34 | 126 |
Msa0143860 | AT3G04670.2 | 32.581 | 310 | 154 | 11 | 11 | 289 | 1 | 286 | 3.67e-31 | 119 |
Msa0143860 | AT4G24240.2 | 54.237 | 118 | 40 | 4 | 170 | 285 | 196 | 301 | 2.66e-29 | 114 |
Msa0143860 | AT2G34830.1 | 55.682 | 88 | 34 | 2 | 240 | 322 | 185 | 272 | 9.62e-29 | 115 |
Msa0143860 | AT2G34830.2 | 55.682 | 88 | 34 | 2 | 240 | 322 | 194 | 281 | 1.06e-28 | 115 |
Msa0143860 | AT1G29280.1 | 57.609 | 92 | 32 | 3 | 238 | 322 | 40 | 131 | 3.06e-28 | 110 |
Msa0143860 | AT1G30650.1 | 54.545 | 88 | 35 | 2 | 240 | 322 | 187 | 274 | 2.64e-27 | 111 |
Msa0143860 | AT4G01250.1 | 57.143 | 91 | 33 | 2 | 232 | 322 | 101 | 185 | 5.02e-26 | 105 |
Msa0143860 | AT3G58710.2 | 55.682 | 88 | 33 | 2 | 241 | 322 | 40 | 127 | 1.18e-25 | 104 |
Msa0143860 | AT3G58710.1 | 55.682 | 88 | 33 | 2 | 241 | 322 | 41 | 128 | 3.23e-25 | 103 |
Msa0143860 | AT5G52830.1 | 54.878 | 82 | 33 | 1 | 241 | 322 | 145 | 222 | 1.50e-24 | 102 |
Msa0143860 | AT2G38470.1 | 57.317 | 82 | 31 | 2 | 249 | 327 | 343 | 423 | 7.44e-23 | 99.8 |
Msa0143860 | AT2G38470.1 | 54.386 | 57 | 24 | 2 | 266 | 322 | 185 | 239 | 8.51e-12 | 66.6 |
Msa0143860 | AT5G45050.1 | 50.000 | 82 | 37 | 1 | 241 | 322 | 1160 | 1237 | 2.01e-21 | 96.3 |
Msa0143860 | AT5G45050.2 | 50.000 | 82 | 37 | 1 | 241 | 322 | 1132 | 1209 | 2.02e-21 | 96.3 |
Msa0143860 | AT1G13960.2 | 55.696 | 79 | 31 | 2 | 249 | 324 | 237 | 314 | 3.74e-21 | 93.6 |
Msa0143860 | AT1G13960.2 | 54.839 | 62 | 25 | 3 | 262 | 322 | 72 | 131 | 8.51e-14 | 72.0 |
Msa0143860 | AT2G03340.1 | 49.495 | 99 | 37 | 3 | 241 | 327 | 379 | 476 | 3.87e-21 | 94.7 |
Msa0143860 | AT2G03340.1 | 50.746 | 67 | 30 | 3 | 259 | 324 | 243 | 307 | 5.90e-14 | 73.2 |
Msa0143860 | AT5G07100.2 | 57.534 | 73 | 30 | 1 | 252 | 324 | 128 | 199 | 5.44e-21 | 90.1 |
Msa0143860 | AT5G07100.4 | 57.534 | 73 | 30 | 1 | 252 | 324 | 128 | 199 | 5.44e-21 | 90.1 |
Msa0143860 | AT5G07100.5 | 57.534 | 73 | 30 | 1 | 252 | 324 | 128 | 199 | 5.44e-21 | 90.1 |
Msa0143860 | AT5G07100.3 | 57.534 | 73 | 30 | 1 | 252 | 324 | 128 | 199 | 5.44e-21 | 90.1 |
Msa0143860 | AT1G13960.1 | 55.696 | 79 | 31 | 2 | 249 | 324 | 390 | 467 | 6.21e-21 | 94.0 |
Msa0143860 | AT1G13960.1 | 54.839 | 62 | 25 | 3 | 262 | 322 | 225 | 284 | 8.59e-14 | 72.8 |
Msa0143860 | AT2G04880.2 | 61.905 | 63 | 23 | 1 | 262 | 324 | 280 | 341 | 6.42e-21 | 93.6 |
Msa0143860 | AT2G04880.1 | 61.905 | 63 | 23 | 1 | 262 | 324 | 304 | 365 | 8.07e-21 | 93.6 |
Msa0143860 | AT4G23550.1 | 50.000 | 80 | 36 | 1 | 245 | 324 | 124 | 199 | 8.95e-21 | 91.7 |
Msa0143860 | AT5G45050.4 | 50.000 | 82 | 37 | 1 | 241 | 322 | 1021 | 1098 | 8.98e-21 | 94.4 |
Msa0143860 | AT4G26640.5 | 54.545 | 77 | 31 | 2 | 251 | 324 | 188 | 263 | 1.23e-20 | 92.0 |
Msa0143860 | AT4G26640.6 | 54.545 | 77 | 31 | 2 | 251 | 324 | 188 | 263 | 1.23e-20 | 92.0 |
Msa0143860 | AT4G26640.4 | 54.545 | 77 | 31 | 2 | 251 | 324 | 188 | 263 | 1.23e-20 | 92.0 |
Msa0143860 | AT4G26640.3 | 54.545 | 77 | 31 | 2 | 251 | 324 | 188 | 263 | 1.23e-20 | 92.0 |
Msa0143860 | AT5G49520.1 | 51.351 | 74 | 35 | 1 | 249 | 322 | 205 | 277 | 1.31e-20 | 92.4 |
Msa0143860 | AT5G07100.1 | 46.739 | 92 | 48 | 1 | 233 | 324 | 202 | 292 | 1.61e-20 | 90.9 |
Msa0143860 | AT1G29860.1 | 48.148 | 81 | 41 | 1 | 249 | 329 | 120 | 199 | 1.68e-20 | 90.5 |
Msa0143860 | AT5G26170.1 | 51.389 | 72 | 34 | 1 | 252 | 323 | 100 | 170 | 2.20e-20 | 87.4 |
Msa0143860 | AT4G26640.1 | 54.545 | 77 | 31 | 2 | 251 | 324 | 292 | 367 | 2.32e-20 | 92.0 |
Msa0143860 | AT4G26640.2 | 54.545 | 77 | 31 | 2 | 251 | 324 | 364 | 439 | 2.35e-20 | 92.4 |
Msa0143860 | AT4G26640.7 | 54.545 | 77 | 31 | 2 | 251 | 324 | 324 | 399 | 2.60e-20 | 92.0 |
Msa0143860 | AT5G56270.1 | 53.659 | 82 | 37 | 1 | 246 | 327 | 468 | 548 | 3.78e-20 | 92.0 |
Msa0143860 | AT5G56270.1 | 52.632 | 57 | 25 | 2 | 266 | 322 | 274 | 328 | 5.40e-11 | 64.3 |
Msa0143860 | AT2G37260.3 | 42.742 | 124 | 63 | 3 | 201 | 324 | 212 | 327 | 6.05e-20 | 89.7 |
Msa0143860 | AT2G37260.3 | 53.448 | 58 | 25 | 2 | 266 | 323 | 86 | 141 | 3.05e-12 | 67.4 |
Msa0143860 | AT4G18170.1 | 46.154 | 91 | 48 | 1 | 234 | 324 | 141 | 230 | 7.27e-20 | 89.4 |
Msa0143860 | AT2G37260.2 | 42.742 | 124 | 63 | 3 | 201 | 324 | 210 | 325 | 7.92e-20 | 89.4 |
Msa0143860 | AT2G37260.2 | 53.448 | 58 | 25 | 2 | 266 | 323 | 84 | 139 | 3.40e-12 | 67.0 |
Msa0143860 | AT2G37260.1 | 42.742 | 124 | 63 | 3 | 201 | 324 | 292 | 407 | 1.05e-19 | 90.1 |
Msa0143860 | AT2G37260.1 | 53.448 | 58 | 25 | 2 | 266 | 323 | 166 | 221 | 2.89e-12 | 67.8 |
Msa0143860 | AT2G40740.1 | 34.532 | 139 | 78 | 3 | 185 | 320 | 102 | 230 | 1.64e-19 | 87.8 |
Msa0143860 | AT4G39410.1 | 47.126 | 87 | 42 | 2 | 240 | 323 | 195 | 280 | 1.98e-19 | 87.8 |
Msa0143860 | AT2G40740.3 | 34.532 | 139 | 78 | 3 | 185 | 320 | 111 | 239 | 2.23e-19 | 87.4 |
Msa0143860 | AT4G04450.2 | 50.000 | 74 | 37 | 0 | 249 | 322 | 182 | 255 | 2.76e-19 | 89.0 |
Msa0143860 | AT4G26440.1 | 51.220 | 82 | 39 | 1 | 246 | 327 | 353 | 433 | 3.02e-19 | 89.4 |
Msa0143860 | AT4G26440.1 | 53.448 | 58 | 25 | 2 | 266 | 323 | 179 | 234 | 1.05e-11 | 66.2 |
Msa0143860 | AT4G04450.1 | 50.000 | 74 | 37 | 0 | 249 | 322 | 276 | 349 | 5.22e-19 | 88.2 |
Msa0143860 | AT1G69310.4 | 48.837 | 86 | 39 | 3 | 240 | 322 | 120 | 203 | 6.13e-19 | 85.9 |
Msa0143860 | AT1G69310.2 | 48.837 | 86 | 39 | 3 | 240 | 322 | 120 | 203 | 6.13e-19 | 85.9 |
Msa0143860 | AT1G69310.1 | 48.837 | 86 | 39 | 3 | 240 | 322 | 120 | 203 | 6.13e-19 | 85.9 |
Msa0143860 | AT2G47260.1 | 43.373 | 83 | 46 | 1 | 240 | 322 | 149 | 230 | 6.26e-19 | 86.7 |
Msa0143860 | AT4G31800.2 | 46.575 | 73 | 39 | 0 | 250 | 322 | 96 | 168 | 1.12e-18 | 84.3 |
Msa0143860 | AT3G01080.2 | 53.165 | 79 | 33 | 2 | 249 | 324 | 325 | 402 | 1.34e-18 | 87.0 |
Msa0143860 | AT3G01080.2 | 56.452 | 62 | 24 | 3 | 262 | 322 | 201 | 260 | 1.54e-14 | 74.7 |
Msa0143860 | AT3G01080.1 | 53.165 | 79 | 33 | 2 | 249 | 324 | 287 | 364 | 1.56e-18 | 86.7 |
Msa0143860 | AT3G01080.1 | 56.452 | 62 | 24 | 3 | 262 | 322 | 163 | 222 | 1.91e-14 | 74.3 |
Msa0143860 | AT4G22070.4 | 48.649 | 74 | 38 | 0 | 249 | 322 | 281 | 354 | 1.67e-18 | 87.0 |
Msa0143860 | AT4G22070.3 | 48.649 | 74 | 38 | 0 | 249 | 322 | 281 | 354 | 1.67e-18 | 87.0 |
Msa0143860 | AT4G22070.2 | 48.649 | 74 | 38 | 0 | 249 | 322 | 281 | 354 | 1.67e-18 | 87.0 |
Msa0143860 | AT4G22070.1 | 48.649 | 74 | 38 | 0 | 249 | 322 | 281 | 354 | 1.67e-18 | 87.0 |
Msa0143860 | AT1G62300.1 | 48.649 | 74 | 38 | 0 | 249 | 322 | 296 | 369 | 1.70e-18 | 87.0 |
Msa0143860 | AT4G31800.1 | 46.575 | 73 | 39 | 0 | 250 | 322 | 161 | 233 | 1.73e-18 | 85.1 |
Msa0143860 | AT5G46350.1 | 50.685 | 73 | 35 | 1 | 252 | 324 | 170 | 241 | 2.88e-18 | 84.7 |
Msa0143860 | AT5G15130.2 | 47.561 | 82 | 42 | 1 | 243 | 324 | 164 | 244 | 3.69e-18 | 85.9 |
Msa0143860 | AT5G15130.1 | 47.561 | 82 | 42 | 1 | 243 | 324 | 206 | 286 | 3.87e-18 | 85.9 |
Msa0143860 | AT2G44745.1 | 41.414 | 99 | 54 | 2 | 227 | 322 | 104 | 201 | 1.05e-17 | 81.3 |
Msa0143860 | AT3G62340.1 | 47.500 | 80 | 41 | 1 | 243 | 322 | 96 | 174 | 1.27e-17 | 82.0 |
Msa0143860 | AT4G01720.1 | 48.649 | 74 | 38 | 0 | 249 | 322 | 223 | 296 | 1.89e-17 | 83.6 |
Msa0143860 | AT5G45260.1 | 32.530 | 166 | 80 | 4 | 159 | 322 | 1132 | 1267 | 3.54e-17 | 83.6 |
Msa0143860 | AT1G68150.1 | 56.140 | 57 | 25 | 0 | 266 | 322 | 236 | 292 | 7.90e-17 | 81.3 |
Msa0143860 | AT1G55600.1 | 44.156 | 77 | 42 | 1 | 246 | 322 | 288 | 363 | 8.08e-17 | 81.6 |
Msa0143860 | AT1G64000.1 | 40.449 | 89 | 49 | 2 | 244 | 329 | 90 | 177 | 9.10e-17 | 78.2 |
Msa0143860 | AT4G30935.1 | 51.613 | 62 | 29 | 1 | 263 | 324 | 329 | 389 | 1.00e-16 | 81.3 |
Msa0143860 | AT5G41570.1 | 42.353 | 85 | 45 | 2 | 248 | 329 | 78 | 161 | 1.17e-16 | 77.4 |
Msa0143860 | AT2G46130.1 | 42.857 | 84 | 44 | 2 | 249 | 329 | 11 | 93 | 1.91e-16 | 74.7 |
Msa0143860 | AT1G18860.1 | 48.101 | 79 | 40 | 1 | 244 | 322 | 219 | 296 | 2.22e-16 | 80.5 |
Msa0143860 | AT5G13080.1 | 46.053 | 76 | 39 | 2 | 261 | 336 | 63 | 136 | 2.45e-16 | 75.5 |
Msa0143860 | AT1G80840.1 | 38.776 | 98 | 54 | 2 | 239 | 331 | 116 | 212 | 2.72e-16 | 78.6 |
Msa0143860 | AT2G25000.2 | 44.595 | 74 | 41 | 0 | 250 | 323 | 88 | 161 | 3.50e-16 | 77.0 |
Msa0143860 | AT2G25000.4 | 44.595 | 74 | 41 | 0 | 250 | 323 | 88 | 161 | 3.50e-16 | 77.0 |
Msa0143860 | AT2G25000.3 | 44.595 | 74 | 41 | 0 | 250 | 323 | 110 | 183 | 6.30e-16 | 77.0 |
Msa0143860 | AT2G30250.1 | 43.023 | 86 | 45 | 2 | 247 | 329 | 307 | 391 | 8.20e-16 | 78.2 |
Msa0143860 | AT2G25000.1 | 44.595 | 74 | 41 | 0 | 250 | 323 | 131 | 204 | 8.56e-16 | 77.0 |
Msa0143860 | AT3G01970.1 | 48.438 | 64 | 32 | 1 | 261 | 324 | 61 | 123 | 8.96e-16 | 73.9 |
Msa0143860 | AT2G21900.1 | 54.386 | 57 | 25 | 1 | 266 | 322 | 110 | 165 | 1.05e-15 | 75.1 |
Msa0143860 | AT5G64810.1 | 45.070 | 71 | 38 | 1 | 252 | 322 | 97 | 166 | 2.06e-15 | 74.3 |
Msa0143860 | AT3G01080.3 | 57.895 | 57 | 22 | 2 | 266 | 322 | 206 | 260 | 9.30e-15 | 74.7 |
Msa0143860 | AT5G43290.1 | 50.667 | 75 | 33 | 2 | 248 | 322 | 100 | 170 | 9.52e-15 | 73.9 |
Msa0143860 | AT1G69310.3 | 46.512 | 86 | 37 | 4 | 240 | 322 | 120 | 199 | 1.26e-14 | 73.6 |
Msa0143860 | AT4G11070.2 | 43.373 | 83 | 44 | 2 | 241 | 320 | 84 | 166 | 2.51e-13 | 69.7 |
Msa0143860 | AT4G11070.1 | 43.373 | 83 | 44 | 2 | 241 | 320 | 116 | 198 | 2.93e-13 | 70.1 |
Msa0143860 | AT1G69810.1 | 37.374 | 99 | 53 | 2 | 225 | 322 | 171 | 261 | 7.73e-13 | 69.3 |
Msa0143860 | AT1G69810.2 | 37.374 | 99 | 53 | 2 | 225 | 322 | 113 | 203 | 9.10e-13 | 68.6 |
Msa0143860 | AT3G56400.1 | 32.743 | 113 | 71 | 3 | 212 | 320 | 66 | 177 | 1.22e-12 | 68.2 |
Msa0143860 | AT2G46130.2 | 39.286 | 84 | 43 | 2 | 249 | 329 | 11 | 89 | 1.99e-12 | 63.5 |
Msa0143860 | AT5G24110.1 | 41.772 | 79 | 39 | 3 | 246 | 320 | 95 | 170 | 2.22e-12 | 67.4 |
Msa0143860 | AT1G66560.1 | 49.153 | 59 | 28 | 1 | 264 | 320 | 102 | 160 | 2.43e-12 | 66.6 |
Msa0143860 | AT2G46400.1 | 35.789 | 95 | 57 | 2 | 230 | 320 | 67 | 161 | 3.17e-12 | 66.6 |
Msa0143860 | AT4G23810.1 | 33.929 | 112 | 71 | 2 | 212 | 320 | 104 | 215 | 3.61e-12 | 67.0 |
Msa0143860 | AT4G12020.6 | 50.877 | 57 | 26 | 2 | 266 | 322 | 469 | 523 | 3.05e-11 | 65.5 |
Msa0143860 | AT4G12020.8 | 50.877 | 57 | 26 | 2 | 266 | 322 | 469 | 523 | 3.05e-11 | 65.5 |
Msa0143860 | AT4G12020.1 | 50.877 | 57 | 26 | 2 | 266 | 322 | 469 | 523 | 3.38e-11 | 65.1 |
Msa0143860 | AT4G12020.9 | 50.877 | 57 | 26 | 2 | 266 | 322 | 469 | 523 | 3.38e-11 | 65.1 |
Msa0143860 | AT4G12020.3 | 50.877 | 57 | 26 | 2 | 266 | 322 | 469 | 523 | 3.40e-11 | 65.1 |
Msa0143860 | AT4G12020.10 | 50.877 | 57 | 26 | 2 | 266 | 322 | 469 | 523 | 3.43e-11 | 65.1 |
Msa0143860 | AT4G12020.7 | 50.877 | 57 | 26 | 2 | 266 | 322 | 469 | 523 | 3.47e-11 | 65.1 |
Msa0143860 | AT4G12020.5 | 50.877 | 57 | 26 | 2 | 266 | 322 | 402 | 456 | 3.87e-11 | 65.1 |
Msa0143860 | AT4G12020.4 | 50.877 | 57 | 26 | 2 | 266 | 322 | 469 | 523 | 3.96e-11 | 65.1 |
Msa0143860 | AT4G12020.2 | 50.877 | 57 | 26 | 2 | 266 | 322 | 469 | 523 | 4.03e-11 | 65.1 |
Msa0143860 | AT4G12020.11 | 50.877 | 57 | 26 | 2 | 266 | 322 | 469 | 523 | 4.90e-11 | 64.7 |
Msa0143860 | AT2G40750.1 | 34.444 | 90 | 49 | 2 | 233 | 320 | 128 | 209 | 6.17e-11 | 63.2 |
Find 126 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGCTCCACGTGTTTCCTTGC+TGG | 0.172147 | 1_4:-2976780 | None:intergenic |
GAACACTCCGATGACGTTTC+AGG | 0.267127 | 1_4:+2974995 | Msa0143860:CDS |
GTATTTGAGTCAACGTAATA+AGG | 0.271448 | 1_4:+2976906 | Msa0143860:exon |
TTAATATAGAGATGGAAAAT+TGG | 0.281523 | 1_4:+2977075 | Msa0143860:three_prime_UTR |
TTTATGTCATCTGCTATTAC+TGG | 0.300028 | 1_4:+2974845 | Msa0143860:CDS |
CGCATCCGGGATTGTGGGTT+TGG | 0.306368 | 1_4:+2976884 | Msa0143860:CDS |
GAGATAGTTGGTGTCGCCGC+TGG | 0.334561 | 1_4:-2974914 | None:intergenic |
TACAAGTGTAGCACTGTAAG+AGG | 0.337436 | 1_4:+2976753 | Msa0143860:CDS |
GAGAGGGAGGAAAGTGTGTT+TGG | 0.341752 | 1_4:-2974229 | None:intergenic |
GAGCTCAAAACGACGTCGTT+TGG | 0.354917 | 1_4:-2974746 | None:intergenic |
TTCTGATGCAGCCTCTTGTA+TGG | 0.355564 | 1_4:-2974366 | None:intergenic |
GAACCGGGGCGCGTCTGAAC+CGG | 0.362386 | 1_4:-2974520 | None:intergenic |
GACGGAGAAGGAAAGTGTTT+TGG | 0.384362 | 1_4:-2974629 | None:intergenic |
GGGTGAAAGGTTGAGGGATG+TGG | 0.388276 | 1_4:-2974204 | None:intergenic |
GCTCCACGTGTTTCCTTGCT+GGG | 0.389925 | 1_4:-2976779 | None:intergenic |
TTGGTTGATGAGAAAGGGTT+AGG | 0.397259 | 1_4:-2974415 | None:intergenic |
TATAACTCTTACCGTGGATA+TGG | 0.397980 | 1_4:-2976635 | None:intergenic |
ACTGGTGATGGAAGCGTTAA+CGG | 0.421732 | 1_4:+2974863 | Msa0143860:CDS |
GCGATGCAGGAGAACGCATC+CGG | 0.423327 | 1_4:+2976870 | Msa0143860:CDS |
GCGTCTGAACCGGGCGTGAC+CGG | 0.426753 | 1_4:-2974510 | None:intergenic |
AGGGATGTGGAGATATATAA+AGG | 0.426967 | 1_4:-2974191 | None:intergenic |
GGCGCGTGACGCACAGAGAT+TGG | 0.429652 | 1_4:-2974671 | None:intergenic |
TTCATCACCACCGGTTCAAC+CGG | 0.430740 | 1_4:+2974556 | Msa0143860:CDS |
ATTGAGTTGGTTGATGAGAA+AGG | 0.438129 | 1_4:-2974421 | None:intergenic |
AATAATGGTTAGCAAGACTT+TGG | 0.438323 | 1_4:-2977132 | None:intergenic |
TACTATTCAAGCTGCGATGC+AGG | 0.438847 | 1_4:+2976857 | Msa0143860:CDS |
GACAGGGTTGGTGTTTGAAC+CGG | 0.443888 | 1_4:-2974602 | None:intergenic |
TTTGGAAGGGTGAAAGGTTG+AGG | 0.444269 | 1_4:-2974211 | None:intergenic |
TATTTGAGTCAACGTAATAA+GGG | 0.444413 | 1_4:+2976907 | Msa0143860:exon |
CGGCGGAAAACCGCCGCTAT+CGG | 0.446685 | 1_4:+2974937 | Msa0143860:CDS |
ATTGGAGGAAAGTGGGAGAA+TGG | 0.450955 | 1_4:+2976941 | Msa0143860:three_prime_UTR |
AAGAAAAGGTGTCATGATCA+TGG | 0.451475 | 1_4:+2974971 | Msa0143860:CDS |
ATCTCTTTACTTAACCGAAC+CGG | 0.452961 | 1_4:+2974491 | Msa0143860:CDS |
TGAATCTGAACCGGTTGAAC+CGG | 0.453562 | 1_4:-2974566 | None:intergenic |
GGCATGAGAAGAGGGAGAGA+GGG | 0.453815 | 1_4:-2974245 | None:intergenic |
AGTTGAGTGTTTAATTGAGT+TGG | 0.455065 | 1_4:-2974434 | None:intergenic |
GAAGATGAGGAGGAATGAAC+CGG | 0.456286 | 1_4:-2974536 | None:intergenic |
GGGAGGAAAGTGTGTTTGGA+AGG | 0.458237 | 1_4:-2974225 | None:intergenic |
TGGCATGAGAAGAGGGAGAG+AGG | 0.458607 | 1_4:-2974246 | None:intergenic |
CTGGTGATGGAAGCGTTAAC+GGG | 0.460991 | 1_4:+2974864 | Msa0143860:CDS |
TTCTTTCATCAAAATGGCAG+TGG | 0.466111 | 1_4:+2974307 | Msa0143860:exon |
TTGAGTTGGTTGATGAGAAA+GGG | 0.466292 | 1_4:-2974420 | None:intergenic |
CAAAATGGCAGTGGAACTCA+TGG | 0.473399 | 1_4:+2974316 | Msa0143860:exon |
TACGTTACAATCAGCATCGT+TGG | 0.473963 | 1_4:-2976816 | None:intergenic |
CGCCCGGTTCAGACGCGCCC+CGG | 0.476428 | 1_4:+2974517 | Msa0143860:CDS |
GATTCAATCCACTCCTTCGC+CGG | 0.477754 | 1_4:+2974583 | Msa0143860:CDS |
AACACTCCGATGACGTTTCA+GGG | 0.483071 | 1_4:+2974996 | Msa0143860:CDS |
ACACTTTCCTTCTCCGTCAC+CGG | 0.483385 | 1_4:+2974634 | Msa0143860:CDS |
TTGGAAGGGTGAAAGGTTGA+GGG | 0.485074 | 1_4:-2974210 | None:intergenic |
CTCCTCATCTTCATCACCAC+CGG | 0.490654 | 1_4:+2974547 | Msa0143860:CDS |
ATGAGAAGAGGGAGAGAGGG+AGG | 0.491770 | 1_4:-2974242 | None:intergenic |
GGAGAACGCATCCGGGATTG+TGG | 0.492453 | 1_4:+2976878 | Msa0143860:CDS |
GAGTACTCGTGGCGGAAATA+CGG | 0.498267 | 1_4:+2976590 | Msa0143860:CDS |
AACCGGGGCGCGTCTGAACC+GGG | 0.500032 | 1_4:-2974519 | None:intergenic |
TCATCTGCTATTACTGGTGA+TGG | 0.500505 | 1_4:+2974851 | Msa0143860:CDS |
GTACTCGTCCGGTGGTATAT+CGG | 0.501607 | 1_4:-2976573 | None:intergenic |
TGAACCGGGCGTGACCGGTT+CGG | 0.504434 | 1_4:-2974505 | None:intergenic |
TCCGTCACCGGCACTGTCAC+CGG | 0.506191 | 1_4:+2974646 | Msa0143860:CDS |
AGATAGTTGGTGTCGCCGCT+GGG | 0.508055 | 1_4:-2974913 | None:intergenic |
AGAAAAGGTGTCATGATCAT+GGG | 0.508968 | 1_4:+2974972 | Msa0143860:CDS |
CGGCGGTGCCGTCTAAGAAA+AGG | 0.512268 | 1_4:+2974957 | Msa0143860:CDS |
AAATTGTTGAACAGTTAGAA+TGG | 0.518133 | 1_4:-2974266 | None:intergenic |
AATATGAGTGGAAGTTAAGG+TGG | 0.519240 | 1_4:+2977011 | Msa0143860:three_prime_UTR |
ATGCTGATTGTAACGTATGA+AGG | 0.520363 | 1_4:+2976822 | Msa0143860:CDS |
CGGAAAACCGCCGCTATCGG+CGG | 0.520458 | 1_4:+2974940 | Msa0143860:CDS |
GTTAGAATGGCATGAGAAGA+GGG | 0.526952 | 1_4:-2974253 | None:intergenic |
AATCTCTGTGCGTCACGCGC+CGG | 0.526961 | 1_4:+2974673 | Msa0143860:CDS |
GGAGTGGATTGAATCTGAAC+CGG | 0.533343 | 1_4:-2974575 | None:intergenic |
GGAAGCGTTAACGGGAAACA+AGG | 0.537738 | 1_4:+2974872 | Msa0143860:CDS |
GAGAACGCATCCGGGATTGT+GGG | 0.542352 | 1_4:+2976879 | Msa0143860:CDS |
GGATATGGTGATCCCTTGAT+CGG | 0.543035 | 1_4:-2976620 | None:intergenic |
ATACAAGAGGCTGCATCAGA+AGG | 0.544462 | 1_4:+2974368 | Msa0143860:CDS |
ATACGGTCAGAAACCGATCA+AGG | 0.544971 | 1_4:+2976607 | Msa0143860:CDS |
GCCGGTGACAGTGCCGGTGA+CGG | 0.547798 | 1_4:-2974647 | None:intergenic |
AGTGTGTTTGGAAGGGTGAA+AGG | 0.549827 | 1_4:-2974217 | None:intergenic |
TTAACCGAACCGGTCACGCC+CGG | 0.551066 | 1_4:+2974501 | Msa0143860:CDS |
ATTGGCGCCGGTGACAGTGC+CGG | 0.551205 | 1_4:-2974653 | None:intergenic |
GTTGGTGTTTGAACCGGCGA+AGG | 0.551537 | 1_4:-2974596 | None:intergenic |
GCGGCGACACCAACTATCTC+CGG | 0.553417 | 1_4:+2974917 | Msa0143860:CDS |
GACAGTGCCGGTGACGGAGA+AGG | 0.553869 | 1_4:-2974641 | None:intergenic |
ATATGAGTGGAAGTTAAGGT+GGG | 0.557236 | 1_4:+2977012 | Msa0143860:three_prime_UTR |
CGATGCAGGAGAACGCATCC+GGG | 0.559528 | 1_4:+2976871 | Msa0143860:CDS |
AAATACCAAACCCACAATCC+CGG | 0.560277 | 1_4:-2976889 | None:intergenic |
AGTTAGAATGGCATGAGAAG+AGG | 0.560869 | 1_4:-2974254 | None:intergenic |
TTCCGCCACGAGTACTCGTC+CGG | 0.561775 | 1_4:-2976584 | None:intergenic |
GGAGGAAAGTGTGTTTGGAA+GGG | 0.562555 | 1_4:-2974224 | None:intergenic |
GAAGAGGACTGTGAGAGTAC+CGG | 0.569882 | 1_4:+2976532 | Msa0143860:CDS |
GACGGCACCGCCGATAGCGG+CGG | 0.571524 | 1_4:-2974947 | None:intergenic |
TTAGACGGCACCGCCGATAG+CGG | 0.572147 | 1_4:-2974950 | None:intergenic |
AAGATGAGGAGGAATGAACC+GGG | 0.573874 | 1_4:-2974535 | None:intergenic |
GGAGGAAAGTGGGAGAATGG+AGG | 0.575698 | 1_4:+2976944 | Msa0143860:three_prime_UTR |
TGCGGTTGAACAAAGCTCGC+CGG | 0.578616 | 1_4:-2974692 | None:intergenic |
GCCGTCTTTGAACTTATCGC+CGG | 0.583939 | 1_4:-2976551 | None:intergenic |
GAACTTAGAAACGGTGTGGT+CGG | 0.585451 | 1_4:-2974459 | None:intergenic |
TGTTTGAACCGGCGAAGGAG+TGG | 0.588183 | 1_4:-2974591 | None:intergenic |
AGTGTCATGCTGTGTGGTTG+CGG | 0.596455 | 1_4:-2974710 | None:intergenic |
ATCAGAAGGACTCAAAGGTA+TGG | 0.599816 | 1_4:+2974382 | Msa0143860:CDS |
CTGTAAGAGGGTGCCCAGCA+AGG | 0.607648 | 1_4:+2976766 | Msa0143860:CDS |
AAAATGGCAGTGGAACTCAT+GGG | 0.610326 | 1_4:+2974317 | Msa0143860:exon |
TACGGTCAGAAACCGATCAA+GGG | 0.612371 | 1_4:+2976608 | Msa0143860:CDS |
CGGTGGTGATGAAGATGAGG+AGG | 0.613126 | 1_4:-2974546 | None:intergenic |
GCTGCATCAGAAGGACTCAA+AGG | 0.616681 | 1_4:+2974377 | Msa0143860:CDS |
CGAGAATTCAAGCTCAACCA+TGG | 0.618884 | 1_4:-2974783 | None:intergenic |
ATTTGAGTCAACGTAATAAG+GGG | 0.619420 | 1_4:+2976908 | Msa0143860:exon |
ATTCGACCCTGAAACGTCAT+CGG | 0.623065 | 1_4:-2975002 | None:intergenic |
TGACGCACAGAGATTGGCGC+CGG | 0.628257 | 1_4:-2974665 | None:intergenic |
GAAAAGGTGTCATGATCATG+GGG | 0.632050 | 1_4:+2974973 | Msa0143860:CDS |
TATGAGTGGAAGTTAAGGTG+GGG | 0.635698 | 1_4:+2977013 | Msa0143860:three_prime_UTR |
ACAAGTGTAGCACTGTAAGA+GGG | 0.637119 | 1_4:+2976754 | Msa0143860:CDS |
CGCCACGAGTACTCGTCCGG+TGG | 0.638685 | 1_4:-2976581 | None:intergenic |
ATCTGAACCGGTTGAACCGG+TGG | 0.642716 | 1_4:-2974563 | None:intergenic |
AGTGCCACTGTGTCAAGAGA+AGG | 0.645447 | 1_4:+2975026 | Msa0143860:CDS |
GGTTGAGCTTGAATTCTCGA+AGG | 0.647277 | 1_4:+2974787 | Msa0143860:CDS |
ACCGGCGATAAGTTCAAAGA+CGG | 0.648876 | 1_4:+2976550 | Msa0143860:CDS |
AAATGGCAGTGGAACTCATG+GGG | 0.650555 | 1_4:+2974318 | Msa0143860:exon |
TCAAGGGATCACCATATCCA+CGG | 0.651372 | 1_4:+2976624 | Msa0143860:CDS |
AACCGGTGGTGATGAAGATG+AGG | 0.659341 | 1_4:-2974549 | None:intergenic |
GTGCCCAGCAAGGAAACACG+TGG | 0.663662 | 1_4:+2976776 | Msa0143860:CDS |
AAAGACGGCCGATATACCAC+CGG | 0.676381 | 1_4:+2976565 | Msa0143860:CDS |
TACCACCGGACGAGTACTCG+TGG | 0.691070 | 1_4:+2976579 | Msa0143860:CDS |
GCGACACCAACTATCTCCGG+CGG | 0.701511 | 1_4:+2974920 | Msa0143860:CDS |
GAAGCGTTAACGGGAAACAA+GGG | 0.708559 | 1_4:+2974873 | Msa0143860:CDS |
AAATCGAGTGTCATGCTGTG+TGG | 0.710920 | 1_4:-2974716 | None:intergenic |
TGTACCTTCTCTTGACACAG+TGG | 0.717082 | 1_4:-2975030 | None:intergenic |
CACCGGACGAGTACTCGTGG+CGG | 0.727156 | 1_4:+2976582 | Msa0143860:CDS |
AGATGAGGAGGAATGAACCG+GGG | 0.738996 | 1_4:-2974534 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAGATAATTAAAGATATTAA+CGG | - | chr1_4:2975274-2975293 | None:intergenic | 10.0% |
!!! | ATATATTTTTGATTTTTGAT+TGG | + | chr1_4:2975581-2975600 | Msa0143860:intron | 10.0% |
!! | ATTAATTAGAAATAAAGAAA+GGG | + | chr1_4:2975629-2975648 | Msa0143860:intron | 10.0% |
!!! | AAAATATTTTAATATAGAGA+TGG | + | chr1_4:2977067-2977086 | Msa0143860:three_prime_UTR | 10.0% |
!! | TATACATTAGTAAAAAAGTA+TGG | + | chr1_4:2975378-2975397 | Msa0143860:intron | 15.0% |
!! | CATTAATTAGAAATAAAGAA+AGG | + | chr1_4:2975628-2975647 | Msa0143860:intron | 15.0% |
!!! | ATATAGGATTTTAATTTTTG+TGG | + | chr1_4:2976023-2976042 | Msa0143860:intron | 15.0% |
!!! | TATAGGATTTTAATTTTTGT+GGG | + | chr1_4:2976024-2976043 | Msa0143860:intron | 15.0% |
!!! | TTATTTTACAATTCAATGTA+CGG | + | chr1_4:2976221-2976240 | Msa0143860:intron | 15.0% |
!!! | TTTTTTTTACCAGAAAAAAT+AGG | + | chr1_4:2976507-2976526 | Msa0143860:intron | 15.0% |
!!! | TTTTTTTACCAGAAAAAATA+GGG | + | chr1_4:2976508-2976527 | Msa0143860:intron | 15.0% |
!! | ATAAAAGTCAACATAATTAA+CGG | - | chr1_4:2976681-2976700 | None:intergenic | 15.0% |
!!! | TTCATTTTCTTTCATCAAAA+TGG | + | chr1_4:2974301-2974320 | Msa0143860:exon | 20.0% |
!!! | CTTTTTGTTCATCTATTTTT+GGG | - | chr1_4:2974346-2974365 | None:intergenic | 20.0% |
!! | TTTGTCATTATGTTAATCTA+CGG | - | chr1_4:2975185-2975204 | None:intergenic | 20.0% |
!! | TGAACTCATAATCAAAAAAT+GGG | - | chr1_4:2975986-2976005 | None:intergenic | 20.0% |
!! | TTGAACTCATAATCAAAAAA+TGG | - | chr1_4:2975987-2976006 | None:intergenic | 20.0% |
!! | TATGAGTTCAAATTAAATTG+AGG | + | chr1_4:2975996-2976015 | Msa0143860:intron | 20.0% |
!! | ATGAGTTCAAATTAAATTGA+GGG | + | chr1_4:2975997-2976016 | Msa0143860:intron | 20.0% |
!! | ATTAAATTGAGGGATAATAT+AGG | + | chr1_4:2976007-2976026 | Msa0143860:intron | 20.0% |
!!! | GAAATACTTTTTTTTTTGAG+AGG | + | chr1_4:2976371-2976390 | Msa0143860:intron | 20.0% |
!!! | TTTTTTTTTGAGAGGAAATA+TGG | + | chr1_4:2976379-2976398 | Msa0143860:intron | 20.0% |
!!! | TTTTTTTTGAGAGGAAATAT+GGG | + | chr1_4:2976380-2976399 | Msa0143860:intron | 20.0% |
!!! | TTATTCTTTCTTTTAATCAG+AGG | + | chr1_4:2976726-2976745 | Msa0143860:intron | 20.0% |
!! | ATAAGGGGAATTAAAAAAAT+TGG | + | chr1_4:2976923-2976942 | Msa0143860:exon | 20.0% |
!!! | TTTTGTTAGAAAAATATGAG+TGG | + | chr1_4:2976999-2977018 | Msa0143860:three_prime_UTR | 20.0% |
!! | TTAATATAGAGATGGAAAAT+TGG | + | chr1_4:2977075-2977094 | Msa0143860:three_prime_UTR | 20.0% |
! | AAATTGTTGAACAGTTAGAA+TGG | - | chr1_4:2974269-2974288 | None:intergenic | 25.0% |
!! | GCTTTTTGTTCATCTATTTT+TGG | - | chr1_4:2974347-2974366 | None:intergenic | 25.0% |
!!! | GAGTTTTTTGAACTTAGAAA+CGG | - | chr1_4:2974471-2974490 | None:intergenic | 25.0% |
! | ATTCAAAGGTAAACTCTAAA+AGG | - | chr1_4:2975093-2975112 | None:intergenic | 25.0% |
!!! | TTTTAGAGTTTACCTTTGAA+TGG | + | chr1_4:2975092-2975111 | Msa0143860:intron | 25.0% |
!!! | TTTGGACATGTATTTTGAAA+CGG | - | chr1_4:2975216-2975235 | None:intergenic | 25.0% |
!! | CATATGTGAAGTTATTGATT+TGG | - | chr1_4:2975234-2975253 | None:intergenic | 25.0% |
!!! | ATTGGACATGTATTTTGAAA+CGG | + | chr1_4:2975437-2975456 | Msa0143860:intron | 25.0% |
! | TAGAAATAAAGAAAGGGAAA+AGG | + | chr1_4:2975635-2975654 | Msa0143860:intron | 25.0% |
! | TGTGGTTAAAATGCTTTAAT+AGG | + | chr1_4:2975740-2975759 | Msa0143860:intron | 25.0% |
!!! | ACCATATCATTTGATAGTTT+TGG | + | chr1_4:2976064-2976083 | Msa0143860:intron | 25.0% |
! | TCCAAAACTATCAAATGATA+TGG | - | chr1_4:2976068-2976087 | None:intergenic | 25.0% |
!!! | TCGAATTACTTTTTAGTCAA+AGG | - | chr1_4:2976105-2976124 | None:intergenic | 25.0% |
! | ACAATTTACTCTTATCCAAT+TGG | + | chr1_4:2976341-2976360 | Msa0143860:intron | 25.0% |
! | TATTTGAGTCAACGTAATAA+GGG | + | chr1_4:2976907-2976926 | Msa0143860:exon | 25.0% |
! | TTAAAAAAATTGGAGGAAAG+TGG | + | chr1_4:2976933-2976952 | Msa0143860:three_prime_UTR | 25.0% |
! | TAAAAAAATTGGAGGAAAGT+GGG | + | chr1_4:2976934-2976953 | Msa0143860:three_prime_UTR | 25.0% |
! | AAAAATATGAGTGGAAGTTA+AGG | + | chr1_4:2977008-2977027 | Msa0143860:three_prime_UTR | 25.0% |
AGTTGAGTGTTTAATTGAGT+TGG | - | chr1_4:2974437-2974456 | None:intergenic | 30.0% | |
TTTATGTCATCTGCTATTAC+TGG | + | chr1_4:2974845-2974864 | Msa0143860:CDS | 30.0% | |
ATAGTGCACATTGCAAAAAT+TGG | + | chr1_4:2975419-2975438 | Msa0143860:intron | 30.0% | |
AAACGTTAATGCATGTAATC+GGG | - | chr1_4:2975515-2975534 | None:intergenic | 30.0% | |
CAAACGTTAATGCATGTAAT+CGG | - | chr1_4:2975516-2975535 | None:intergenic | 30.0% | |
!! | CGTTTGACTGATATTTTTAC+CGG | + | chr1_4:2975530-2975549 | Msa0143860:intron | 30.0% |
AAAGAAAGGGAAAAGGTTAA+TGG | + | chr1_4:2975642-2975661 | Msa0143860:intron | 30.0% | |
TAAGTGAAGGGAATTGAAAA+AGG | - | chr1_4:2975888-2975907 | None:intergenic | 30.0% | |
AGTCAAAGCAATTAAGTGAA+GGG | - | chr1_4:2975900-2975919 | None:intergenic | 30.0% | |
GAAATAAGATCCATGAGTTA+GGG | + | chr1_4:2976123-2976142 | Msa0143860:intron | 30.0% | |
AAGTTAAGTTAGACCTAGAT+TGG | + | chr1_4:2976251-2976270 | Msa0143860:intron | 30.0% | |
! | ATTTAAAATCAGGCCAATCT+AGG | - | chr1_4:2976267-2976286 | None:intergenic | 30.0% |
CCAAGTTAACTAAAACATTC+CGG | - | chr1_4:2976320-2976339 | None:intergenic | 30.0% | |
ACTCTTATCCAATTGGAATA+TGG | + | chr1_4:2976348-2976367 | Msa0143860:intron | 30.0% | |
CTCTTATCCAATTGGAATAT+GGG | + | chr1_4:2976349-2976368 | Msa0143860:intron | 30.0% | |
AGTATTTCCCATATTCCAAT+TGG | - | chr1_4:2976359-2976378 | None:intergenic | 30.0% | |
!! | AGAAACTTGTTACTTCTGTT+GGG | - | chr1_4:2976476-2976495 | None:intergenic | 30.0% |
!! | AAGAAACTTGTTACTTCTGT+TGG | - | chr1_4:2976477-2976496 | None:intergenic | 30.0% |
AAAGTCAACATAATTAACGG+TGG | - | chr1_4:2976678-2976697 | None:intergenic | 30.0% | |
GTATTTGAGTCAACGTAATA+AGG | + | chr1_4:2976906-2976925 | Msa0143860:exon | 30.0% | |
ATTTGAGTCAACGTAATAAG+GGG | + | chr1_4:2976908-2976927 | Msa0143860:exon | 30.0% | |
AGGGGAATTAAAAAAATTGG+AGG | + | chr1_4:2976926-2976945 | Msa0143860:three_prime_UTR | 30.0% | |
AGGGATGTGGAGATATATAA+AGG | - | chr1_4:2974194-2974213 | None:intergenic | 35.0% | |
TTCTTTCATCAAAATGGCAG+TGG | + | chr1_4:2974307-2974326 | Msa0143860:exon | 35.0% | |
TGAACAAAAAGCCATACAAG+AGG | + | chr1_4:2974355-2974374 | Msa0143860:CDS | 35.0% | |
!! | TTGAGTTGGTTGATGAGAAA+GGG | - | chr1_4:2974423-2974442 | None:intergenic | 35.0% |
!! | ATTGAGTTGGTTGATGAGAA+AGG | - | chr1_4:2974424-2974443 | None:intergenic | 35.0% |
! | TTTTGAACTTAGAAACGGTG+TGG | - | chr1_4:2974466-2974485 | None:intergenic | 35.0% |
ATCTCTTTACTTAACCGAAC+CGG | + | chr1_4:2974491-2974510 | Msa0143860:CDS | 35.0% | |
!!! | AAAGTGTTTTGGTAGAGACA+GGG | - | chr1_4:2974621-2974640 | None:intergenic | 35.0% |
! | TCATGACACCTTTTCTTAGA+CGG | - | chr1_4:2974968-2974987 | None:intergenic | 35.0% |
!! | AAGAAAAGGTGTCATGATCA+TGG | + | chr1_4:2974971-2974990 | Msa0143860:CDS | 35.0% |
!! | AGAAAAGGTGTCATGATCAT+GGG | + | chr1_4:2974972-2974991 | Msa0143860:CDS | 35.0% |
ATTGAGTGAAACGCAGATAA+AGG | - | chr1_4:2975064-2975083 | None:intergenic | 35.0% | |
AGAGTTTACCTTTGAATGGA+AGG | + | chr1_4:2975096-2975115 | Msa0143860:intron | 35.0% | |
! | TGTTTCTGATGTCCAATATG+TGG | + | chr1_4:2975119-2975138 | Msa0143860:intron | 35.0% |
!!! | GACATGTATTTTGAAACGGA+GGG | - | chr1_4:2975441-2975460 | None:intergenic | 35.0% |
TAACGGTCAAAATTGTGCAT+TGG | - | chr1_4:2975257-2975276 | None:intergenic | 35.0% | |
!!! | GACATGTATTTTGAAACGGA+GGG | + | chr1_4:2975441-2975460 | Msa0143860:intron | 35.0% |
!! | GACTGATATTTTTACCGGTT+AGG | + | chr1_4:2975535-2975554 | Msa0143860:intron | 35.0% |
TCCACATACTTTAACCTAAC+CGG | - | chr1_4:2975552-2975571 | None:intergenic | 35.0% | |
GTTAGGTTAAAGTATGTGGA+CGG | + | chr1_4:2975552-2975571 | Msa0143860:intron | 35.0% | |
GTGAACGAGACAAACAAAAA+AGG | - | chr1_4:2975609-2975628 | None:intergenic | 35.0% | |
TGAAAGTGACAAGACAACAT+AGG | + | chr1_4:2975775-2975794 | Msa0143860:intron | 35.0% | |
GAAAGTGACAAGACAACATA+GGG | + | chr1_4:2975776-2975795 | Msa0143860:intron | 35.0% | |
CAGTCAAAGCAATTAAGTGA+AGG | - | chr1_4:2975901-2975920 | None:intergenic | 35.0% | |
CGAAATAAGATCCATGAGTT+AGG | + | chr1_4:2976122-2976141 | Msa0143860:intron | 35.0% | |
! | GTGGTCGTTCATTTAAAATC+AGG | - | chr1_4:2976277-2976296 | None:intergenic | 35.0% |
CTTAGCAGTCAAAACATTTG+TGG | - | chr1_4:2976296-2976315 | None:intergenic | 35.0% | |
!!! | AATGTTTTGACTGCTAAGAC+CGG | + | chr1_4:2976298-2976317 | Msa0143860:intron | 35.0% |
!!! | CCGGAATGTTTTAGTTAACT+TGG | + | chr1_4:2976317-2976336 | Msa0143860:intron | 35.0% |
TATAACTCTTACCGTGGATA+TGG | - | chr1_4:2976638-2976657 | None:intergenic | 35.0% | |
ATTGTGTATAACTCTTACCG+TGG | - | chr1_4:2976644-2976663 | None:intergenic | 35.0% | |
ACATAATTAACGGTGGAGAT+CGG | - | chr1_4:2976671-2976690 | None:intergenic | 35.0% | |
! | ATGCTGATTGTAACGTATGA+AGG | + | chr1_4:2976822-2976841 | Msa0143860:CDS | 35.0% |
AATATGAGTGGAAGTTAAGG+TGG | + | chr1_4:2977011-2977030 | Msa0143860:three_prime_UTR | 35.0% | |
ATATGAGTGGAAGTTAAGGT+GGG | + | chr1_4:2977012-2977031 | Msa0143860:three_prime_UTR | 35.0% | |
GTTAGAATGGCATGAGAAGA+GGG | - | chr1_4:2974256-2974275 | None:intergenic | 40.0% | |
AGTTAGAATGGCATGAGAAG+AGG | - | chr1_4:2974257-2974276 | None:intergenic | 40.0% | |
AAAATGGCAGTGGAACTCAT+GGG | + | chr1_4:2974317-2974336 | Msa0143860:exon | 40.0% | |
ATCAGAAGGACTCAAAGGTA+TGG | + | chr1_4:2974382-2974401 | Msa0143860:CDS | 40.0% | |
!! | TTGGTTGATGAGAAAGGGTT+AGG | - | chr1_4:2974418-2974437 | None:intergenic | 40.0% |
!!! | GAAAGTGTTTTGGTAGAGAC+AGG | - | chr1_4:2974622-2974641 | None:intergenic | 40.0% |
CTCAAACACGAAAAACTCCA+TGG | + | chr1_4:2974766-2974785 | Msa0143860:CDS | 40.0% | |
TCATCTGCTATTACTGGTGA+TGG | + | chr1_4:2974851-2974870 | Msa0143860:CDS | 40.0% | |
! | TTCGATTTTTCTCAACCCAG+CGG | + | chr1_4:2974898-2974917 | Msa0143860:CDS | 40.0% |
!! | GAAAAGGTGTCATGATCATG+GGG | + | chr1_4:2974973-2974992 | Msa0143860:CDS | 40.0% |
! | AAACGCAGATAAAGGAGTGT+AGG | - | chr1_4:2975056-2975075 | None:intergenic | 40.0% |
CAGAAACACCTTCCATTCAA+AGG | - | chr1_4:2975107-2975126 | None:intergenic | 40.0% | |
TCGCAAACACTACCACATAT+TGG | - | chr1_4:2975134-2975153 | None:intergenic | 40.0% | |
!!! | GGACATGTATTTTGAAACGG+AGG | - | chr1_4:2975440-2975459 | None:intergenic | 40.0% |
!!! | GGACATGTATTTTGAAACGG+AGG | + | chr1_4:2975440-2975459 | Msa0143860:intron | 40.0% |
ACCGGTTAGGTTAAAGTATG+TGG | + | chr1_4:2975548-2975567 | Msa0143860:intron | 40.0% | |
! | ACGTTTGGAGTCAACGATTT+CGG | + | chr1_4:2975711-2975730 | Msa0143860:intron | 40.0% |
TATTATGCTAACATGCGCTG+GGG | - | chr1_4:2975959-2975978 | None:intergenic | 40.0% | |
CTATTATGCTAACATGCGCT+GGG | - | chr1_4:2975960-2975979 | None:intergenic | 40.0% | |
ACTATTATGCTAACATGCGC+TGG | - | chr1_4:2975961-2975980 | None:intergenic | 40.0% | |
GACAACAAAACCCTAACTCA+TGG | - | chr1_4:2976136-2976155 | None:intergenic | 40.0% | |
!!! | CCTCTTCACCCTATTTTTTC+TGG | - | chr1_4:2976519-2976538 | None:intergenic | 40.0% |
CCAGAAAAAATAGGGTGAAG+AGG | + | chr1_4:2976516-2976535 | Msa0143860:intron | 40.0% | |
TACAAGTGTAGCACTGTAAG+AGG | + | chr1_4:2976753-2976772 | Msa0143860:CDS | 40.0% | |
ACAAGTGTAGCACTGTAAGA+GGG | + | chr1_4:2976754-2976773 | Msa0143860:CDS | 40.0% | |
TACGTTACAATCAGCATCGT+TGG | - | chr1_4:2976819-2976838 | None:intergenic | 40.0% | |
AAATACCAAACCCACAATCC+CGG | - | chr1_4:2976892-2976911 | None:intergenic | 40.0% | |
TATGAGTGGAAGTTAAGGTG+GGG | + | chr1_4:2977013-2977032 | Msa0143860:three_prime_UTR | 40.0% | |
TTGGAAGGGTGAAAGGTTGA+GGG | - | chr1_4:2974213-2974232 | None:intergenic | 45.0% | |
TTTGGAAGGGTGAAAGGTTG+AGG | - | chr1_4:2974214-2974233 | None:intergenic | 45.0% | |
AGTGTGTTTGGAAGGGTGAA+AGG | - | chr1_4:2974220-2974239 | None:intergenic | 45.0% | |
! | GGAGGAAAGTGTGTTTGGAA+GGG | - | chr1_4:2974227-2974246 | None:intergenic | 45.0% |
CAAAATGGCAGTGGAACTCA+TGG | + | chr1_4:2974316-2974335 | Msa0143860:exon | 45.0% | |
AAATGGCAGTGGAACTCATG+GGG | + | chr1_4:2974318-2974337 | Msa0143860:exon | 45.0% | |
TTCTGATGCAGCCTCTTGTA+TGG | - | chr1_4:2974369-2974388 | None:intergenic | 45.0% | |
ATACAAGAGGCTGCATCAGA+AGG | + | chr1_4:2974368-2974387 | Msa0143860:CDS | 45.0% | |
GAACTTAGAAACGGTGTGGT+CGG | - | chr1_4:2974462-2974481 | None:intergenic | 45.0% | |
AAGATGAGGAGGAATGAACC+GGG | - | chr1_4:2974538-2974557 | None:intergenic | 45.0% | |
GAAGATGAGGAGGAATGAAC+CGG | - | chr1_4:2974539-2974558 | None:intergenic | 45.0% | |
TGAATCTGAACCGGTTGAAC+CGG | - | chr1_4:2974569-2974588 | None:intergenic | 45.0% | |
!! | GGAGTGGATTGAATCTGAAC+CGG | - | chr1_4:2974578-2974597 | None:intergenic | 45.0% |
!!! | TGTTTTGGTAGAGACAGGGT+TGG | - | chr1_4:2974617-2974636 | None:intergenic | 45.0% |
!!! | GACGGAGAAGGAAAGTGTTT+TGG | - | chr1_4:2974632-2974651 | None:intergenic | 45.0% |
AAATCGAGTGTCATGCTGTG+TGG | - | chr1_4:2974719-2974738 | None:intergenic | 45.0% | |
CGAGAATTCAAGCTCAACCA+TGG | - | chr1_4:2974786-2974805 | None:intergenic | 45.0% | |
GGTTGAGCTTGAATTCTCGA+AGG | + | chr1_4:2974787-2974806 | Msa0143860:CDS | 45.0% | |
!! | ACTGGTGATGGAAGCGTTAA+CGG | + | chr1_4:2974863-2974882 | Msa0143860:CDS | 45.0% |
! | GAAGCGTTAACGGGAAACAA+GGG | + | chr1_4:2974873-2974892 | Msa0143860:CDS | 45.0% |
AACACTCCGATGACGTTTCA+GGG | + | chr1_4:2974996-2975015 | Msa0143860:CDS | 45.0% | |
ATTCGACCCTGAAACGTCAT+CGG | - | chr1_4:2975005-2975024 | None:intergenic | 45.0% | |
TGTACCTTCTCTTGACACAG+TGG | - | chr1_4:2975033-2975052 | None:intergenic | 45.0% | |
ACGTGAATTTGTCGTGTGAG+TGG | + | chr1_4:2975679-2975698 | Msa0143860:intron | 45.0% | |
CGTGAATTTGTCGTGTGAGT+GGG | + | chr1_4:2975680-2975699 | Msa0143860:intron | 45.0% | |
GTGAATTTGTCGTGTGAGTG+GGG | + | chr1_4:2975681-2975700 | Msa0143860:intron | 45.0% | |
! | TTTGGAGTCAACGATTTCGG+TGG | + | chr1_4:2975714-2975733 | Msa0143860:intron | 45.0% |
ATTATGCTAACATGCGCTGG+GGG | - | chr1_4:2975958-2975977 | None:intergenic | 45.0% | |
ACCGGCGATAAGTTCAAAGA+CGG | + | chr1_4:2976550-2976569 | Msa0143860:CDS | 45.0% | |
ATACGGTCAGAAACCGATCA+AGG | + | chr1_4:2976607-2976626 | Msa0143860:CDS | 45.0% | |
TACGGTCAGAAACCGATCAA+GGG | + | chr1_4:2976608-2976627 | Msa0143860:CDS | 45.0% | |
GGATATGGTGATCCCTTGAT+CGG | - | chr1_4:2976623-2976642 | None:intergenic | 45.0% | |
TCAAGGGATCACCATATCCA+CGG | + | chr1_4:2976624-2976643 | Msa0143860:CDS | 45.0% | |
TACTATTCAAGCTGCGATGC+AGG | + | chr1_4:2976857-2976876 | Msa0143860:CDS | 45.0% | |
ATTGGAGGAAAGTGGGAGAA+TGG | + | chr1_4:2976941-2976960 | Msa0143860:three_prime_UTR | 45.0% | |
! | GGGAGGAAAGTGTGTTTGGA+AGG | - | chr1_4:2974228-2974247 | None:intergenic | 50.0% |
! | GAGAGGGAGGAAAGTGTGTT+TGG | - | chr1_4:2974232-2974251 | None:intergenic | 50.0% |
GCTGCATCAGAAGGACTCAA+AGG | + | chr1_4:2974377-2974396 | Msa0143860:CDS | 50.0% | |
AGATGAGGAGGAATGAACCG+GGG | - | chr1_4:2974537-2974556 | None:intergenic | 50.0% | |
CTCCTCATCTTCATCACCAC+CGG | + | chr1_4:2974547-2974566 | Msa0143860:CDS | 50.0% | |
! | AACCGGTGGTGATGAAGATG+AGG | - | chr1_4:2974552-2974571 | None:intergenic | 50.0% |
!! | TTCATCACCACCGGTTCAAC+CGG | + | chr1_4:2974556-2974575 | Msa0143860:CDS | 50.0% |
GATTCAATCCACTCCTTCGC+CGG | + | chr1_4:2974583-2974602 | Msa0143860:CDS | 50.0% | |
!! | GACAGGGTTGGTGTTTGAAC+CGG | - | chr1_4:2974605-2974624 | None:intergenic | 50.0% |
ACACTTTCCTTCTCCGTCAC+CGG | + | chr1_4:2974634-2974653 | Msa0143860:CDS | 50.0% | |
AGTGTCATGCTGTGTGGTTG+CGG | - | chr1_4:2974713-2974732 | None:intergenic | 50.0% | |
GAGCTCAAAACGACGTCGTT+TGG | - | chr1_4:2974749-2974768 | None:intergenic | 50.0% | |
!! | CTGGTGATGGAAGCGTTAAC+GGG | + | chr1_4:2974864-2974883 | Msa0143860:CDS | 50.0% |
!! | GGAAGCGTTAACGGGAAACA+AGG | + | chr1_4:2974872-2974891 | Msa0143860:CDS | 50.0% |
GAACACTCCGATGACGTTTC+AGG | + | chr1_4:2974995-2975014 | Msa0143860:CDS | 50.0% | |
! | AGTGCCACTGTGTCAAGAGA+AGG | + | chr1_4:2975026-2975045 | Msa0143860:CDS | 50.0% |
TTTGTCGTGTGAGTGGGGTA+AGG | + | chr1_4:2975686-2975705 | Msa0143860:intron | 50.0% | |
! | GAAGAGGACTGTGAGAGTAC+CGG | + | chr1_4:2976532-2976551 | Msa0143860:CDS | 50.0% |
GCCGTCTTTGAACTTATCGC+CGG | - | chr1_4:2976554-2976573 | None:intergenic | 50.0% | |
AAAGACGGCCGATATACCAC+CGG | + | chr1_4:2976565-2976584 | Msa0143860:CDS | 50.0% | |
GTACTCGTCCGGTGGTATAT+CGG | - | chr1_4:2976576-2976595 | None:intergenic | 50.0% | |
! | GAGTACTCGTGGCGGAAATA+CGG | + | chr1_4:2976590-2976609 | Msa0143860:CDS | 50.0% |
GGGTGAAAGGTTGAGGGATG+TGG | - | chr1_4:2974207-2974226 | None:intergenic | 55.0% | |
ATGAGAAGAGGGAGAGAGGG+AGG | - | chr1_4:2974245-2974264 | None:intergenic | 55.0% | |
GGCATGAGAAGAGGGAGAGA+GGG | - | chr1_4:2974248-2974267 | None:intergenic | 55.0% | |
TGGCATGAGAAGAGGGAGAG+AGG | - | chr1_4:2974249-2974268 | None:intergenic | 55.0% | |
! | CGGTGGTGATGAAGATGAGG+AGG | - | chr1_4:2974549-2974568 | None:intergenic | 55.0% |
ATCTGAACCGGTTGAACCGG+TGG | - | chr1_4:2974566-2974585 | None:intergenic | 55.0% | |
TGTTTGAACCGGCGAAGGAG+TGG | - | chr1_4:2974594-2974613 | None:intergenic | 55.0% | |
! | GTTGGTGTTTGAACCGGCGA+AGG | - | chr1_4:2974599-2974618 | None:intergenic | 55.0% |
TGCGGTTGAACAAAGCTCGC+CGG | - | chr1_4:2974695-2974714 | None:intergenic | 55.0% | |
!! | AGATAGTTGGTGTCGCCGCT+GGG | - | chr1_4:2974916-2974935 | None:intergenic | 55.0% |
! | GGTTTTCCGCCGGAGATAGT+TGG | - | chr1_4:2974929-2974948 | None:intergenic | 55.0% |
GAGTGGGGTAAGGCTACGTT+TGG | + | chr1_4:2975696-2975715 | Msa0143860:intron | 55.0% | |
GGAGTCAACGATTTCGGTGG+TGG | + | chr1_4:2975717-2975736 | Msa0143860:intron | 55.0% | |
! | CAACGATTTCGGTGGTGGTG+TGG | + | chr1_4:2975722-2975741 | Msa0143860:intron | 55.0% |
GCTCCACGTGTTTCCTTGCT+GGG | - | chr1_4:2976782-2976801 | None:intergenic | 55.0% | |
GAGAACGCATCCGGGATTGT+GGG | + | chr1_4:2976879-2976898 | Msa0143860:CDS | 55.0% | |
GGAGGAAAGTGGGAGAATGG+AGG | + | chr1_4:2976944-2976963 | Msa0143860:three_prime_UTR | 55.0% | |
TTAACCGAACCGGTCACGCC+CGG | + | chr1_4:2974501-2974520 | Msa0143860:CDS | 60.0% | |
TGACGCACAGAGATTGGCGC+CGG | - | chr1_4:2974668-2974687 | None:intergenic | 60.0% | |
AATCTCTGTGCGTCACGCGC+CGG | + | chr1_4:2974673-2974692 | Msa0143860:CDS | 60.0% | |
!! | GAGATAGTTGGTGTCGCCGC+TGG | - | chr1_4:2974917-2974936 | None:intergenic | 60.0% |
GCGGCGACACCAACTATCTC+CGG | + | chr1_4:2974917-2974936 | Msa0143860:CDS | 60.0% | |
GCGACACCAACTATCTCCGG+CGG | + | chr1_4:2974920-2974939 | Msa0143860:CDS | 60.0% | |
TTAGACGGCACCGCCGATAG+CGG | - | chr1_4:2974953-2974972 | None:intergenic | 60.0% | |
!! | CGGCGGTGCCGTCTAAGAAA+AGG | + | chr1_4:2974957-2974976 | Msa0143860:CDS | 60.0% |
TGCTAACATGCGCTGGGGGT+GGG | - | chr1_4:2975954-2975973 | None:intergenic | 60.0% | |
ATGCTAACATGCGCTGGGGG+TGG | - | chr1_4:2975955-2975974 | None:intergenic | 60.0% | |
TACCACCGGACGAGTACTCG+TGG | + | chr1_4:2976579-2976598 | Msa0143860:CDS | 60.0% | |
TTCCGCCACGAGTACTCGTC+CGG | - | chr1_4:2976587-2976606 | None:intergenic | 60.0% | |
!! | CTGTAAGAGGGTGCCCAGCA+AGG | + | chr1_4:2976766-2976785 | Msa0143860:CDS | 60.0% |
GTGCCCAGCAAGGAAACACG+TGG | + | chr1_4:2976776-2976795 | Msa0143860:CDS | 60.0% | |
CGCTCCACGTGTTTCCTTGC+TGG | - | chr1_4:2976783-2976802 | None:intergenic | 60.0% | |
GCGATGCAGGAGAACGCATC+CGG | + | chr1_4:2976870-2976889 | Msa0143860:CDS | 60.0% | |
CGATGCAGGAGAACGCATCC+GGG | + | chr1_4:2976871-2976890 | Msa0143860:CDS | 60.0% | |
GGAGAACGCATCCGGGATTG+TGG | + | chr1_4:2976878-2976897 | Msa0143860:CDS | 60.0% | |
CGCATCCGGGATTGTGGGTT+TGG | + | chr1_4:2976884-2976903 | Msa0143860:CDS | 60.0% | |
TGAACCGGGCGTGACCGGTT+CGG | - | chr1_4:2974508-2974527 | None:intergenic | 65.0% | |
!! | GACAGTGCCGGTGACGGAGA+AGG | - | chr1_4:2974644-2974663 | None:intergenic | 65.0% |
TCCGTCACCGGCACTGTCAC+CGG | + | chr1_4:2974646-2974665 | Msa0143860:CDS | 65.0% | |
!! | ATTGGCGCCGGTGACAGTGC+CGG | - | chr1_4:2974656-2974675 | None:intergenic | 65.0% |
GGCGCGTGACGCACAGAGAT+TGG | - | chr1_4:2974674-2974693 | None:intergenic | 65.0% | |
!! | CGATAGCGGCGGTTTTCCGC+CGG | - | chr1_4:2974939-2974958 | None:intergenic | 65.0% |
CGGCGGAAAACCGCCGCTAT+CGG | + | chr1_4:2974937-2974956 | Msa0143860:CDS | 65.0% | |
CGGAAAACCGCCGCTATCGG+CGG | + | chr1_4:2974940-2974959 | Msa0143860:CDS | 65.0% | |
CACCGGACGAGTACTCGTGG+CGG | + | chr1_4:2976582-2976601 | Msa0143860:CDS | 65.0% | |
GCGTCTGAACCGGGCGTGAC+CGG | - | chr1_4:2974513-2974532 | None:intergenic | 70.0% | |
AACCGGGGCGCGTCTGAACC+GGG | - | chr1_4:2974522-2974541 | None:intergenic | 70.0% | |
GAACCGGGGCGCGTCTGAAC+CGG | - | chr1_4:2974523-2974542 | None:intergenic | 70.0% | |
!! | GCCGGTGACAGTGCCGGTGA+CGG | - | chr1_4:2974650-2974669 | None:intergenic | 70.0% |
CGCCACGAGTACTCGTCCGG+TGG | - | chr1_4:2976584-2976603 | None:intergenic | 70.0% | |
! | GACGGCACCGCCGATAGCGG+CGG | - | chr1_4:2974950-2974969 | None:intergenic | 75.0% |
! | CGCCCGGTTCAGACGCGCCC+CGG | + | chr1_4:2974517-2974536 | Msa0143860:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 2974177 | 2977143 | 2974177 | ID=Msa0143860;Name=Msa0143860 |
chr1_4 | mRNA | 2974177 | 2977143 | 2974177 | ID=Msa0143860-mRNA-1;Parent=Msa0143860;Name=Msa0143860-mRNA-1;_AED=0.00;_eAED=0.00;_QI=143|1|1|1|1|1|3|220|343 |
chr1_4 | exon | 2974177 | 2975047 | 2974177 | ID=Msa0143860-mRNA-1:exon:1290;Parent=Msa0143860-mRNA-1 |
chr1_4 | exon | 2976520 | 2976645 | 2976520 | ID=Msa0143860-mRNA-1:exon:1291;Parent=Msa0143860-mRNA-1 |
chr1_4 | exon | 2976746 | 2977143 | 2976746 | ID=Msa0143860-mRNA-1:exon:1292;Parent=Msa0143860-mRNA-1 |
chr1_4 | five_prime_UTR | 2974177 | 2974319 | 2974177 | ID=Msa0143860-mRNA-1:five_prime_utr;Parent=Msa0143860-mRNA-1 |
chr1_4 | CDS | 2974320 | 2975047 | 2974320 | ID=Msa0143860-mRNA-1:cds;Parent=Msa0143860-mRNA-1 |
chr1_4 | CDS | 2976520 | 2976645 | 2976520 | ID=Msa0143860-mRNA-1:cds;Parent=Msa0143860-mRNA-1 |
chr1_4 | CDS | 2976746 | 2976923 | 2976746 | ID=Msa0143860-mRNA-1:cds;Parent=Msa0143860-mRNA-1 |
chr1_4 | three_prime_UTR | 2976924 | 2977143 | 2976924 | ID=Msa0143860-mRNA-1:three_prime_utr;Parent=Msa0143860-mRNA-1 |
Gene Sequence |
Protein sequence |