AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0143830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0143830 MtrunA17_Chr1g0147881 97.076 342 6 2 1 340 1 340 0.0 675
Msa0143830 MtrunA17_Chr4g0071521 50.000 348 99 11 1 319 1 302 6.30e-87 264
Msa0143830 MtrunA17_Chr4g0053281 39.899 396 124 13 1 340 1 338 2.18e-66 212
Msa0143830 MtrunA17_Chr3g0139021 63.415 164 52 5 167 328 222 379 7.14e-62 202
Msa0143830 MtrunA17_Chr5g0401821 58.394 137 50 2 205 340 141 271 1.10e-51 172
Msa0143830 MtrunA17_Chr5g0401821 43.119 109 42 5 1 90 1 108 5.85e-11 62.4
Msa0143830 MtrunA17_Chr1g0184691 53.631 179 73 3 142 319 181 350 9.95e-47 162
Msa0143830 MtrunA17_Chr7g0228941 65.823 79 27 0 241 319 31 109 5.89e-35 124
Msa0143830 MtrunA17_Chr2g0293481 57.955 88 32 2 237 319 237 324 5.53e-29 116
Msa0143830 MtrunA17_Chr7g0248691 62.195 82 26 2 238 319 135 211 1.33e-28 113
Msa0143830 MtrunA17_Chr2g0284321 54.762 84 37 1 239 321 11 94 7.76e-28 108
Msa0143830 MtrunA17_Chr8g0379461 52.809 89 35 1 238 319 45 133 5.29e-27 106
Msa0143830 MtrunA17_Chr2g0319961 55.556 90 34 2 238 321 50 139 1.44e-26 105
Msa0143830 MtrunA17_Chr7g0270051 51.136 88 38 1 237 319 23 110 3.89e-26 105
Msa0143830 MtrunA17_Chr8g0348311 58.537 82 29 1 238 319 136 212 9.11e-26 105
Msa0143830 MtrunA17_Chr4g0042831 50.505 99 37 3 237 324 242 339 5.08e-23 98.6
Msa0143830 MtrunA17_Chr4g0042831 50.877 57 27 1 263 319 146 201 8.59e-11 62.8
Msa0143830 MtrunA17_Chr5g0418191 57.317 82 31 2 246 324 301 381 8.74e-23 98.6
Msa0143830 MtrunA17_Chr5g0418191 34.320 169 90 7 159 321 55 208 1.74e-13 70.9
Msa0143830 MtrunA17_Chr2g0289181 53.165 79 34 1 256 334 8 83 4.79e-22 93.2
Msa0143830 MtrunA17_Chr3g0106491 40.690 145 74 4 189 323 283 425 4.90e-22 96.7
Msa0143830 MtrunA17_Chr3g0106491 50.000 68 32 2 263 330 199 264 1.56e-12 68.2
Msa0143830 MtrunA17_Chr5g0445311 52.381 84 36 2 244 324 343 425 5.34e-22 96.7
Msa0143830 MtrunA17_Chr1g0202461 50.000 80 39 1 241 319 239 318 7.01e-22 95.5
Msa0143830 MtrunA17_Chr3g0101131 46.667 105 46 4 238 334 383 485 2.79e-21 94.7
Msa0143830 MtrunA17_Chr4g0004911 38.168 131 65 4 194 321 277 394 5.71e-21 93.6
Msa0143830 MtrunA17_Chr4g0004911 50.877 57 27 1 263 319 185 240 5.57e-12 66.6
Msa0143830 MtrunA17_Chr7g0218081 53.012 83 35 2 245 324 390 471 5.85e-21 93.6
Msa0143830 MtrunA17_Chr7g0218081 47.059 85 39 4 254 334 219 301 8.52e-14 72.0
Msa0143830 MtrunA17_Chr5g0432161 56.098 82 32 2 246 324 402 482 6.08e-21 94.0
Msa0143830 MtrunA17_Chr5g0432161 54.386 57 24 2 263 319 245 299 6.27e-12 66.6
Msa0143830 MtrunA17_Chr4g0051881 44.706 85 46 1 249 333 165 248 1.00e-20 91.3
Msa0143830 MtrunA17_Chr7g0270191 44.318 88 48 1 232 319 115 201 1.16e-20 90.5
Msa0143830 MtrunA17_Chr3g0079691 52.439 82 38 1 243 324 476 556 1.63e-20 92.8
Msa0143830 MtrunA17_Chr3g0079691 54.386 57 24 2 263 319 281 335 1.81e-12 68.2
Msa0143830 MtrunA17_Chr7g0243891 40.288 139 64 5 189 324 313 435 3.25e-20 91.7
Msa0143830 MtrunA17_Chr7g0243891 54.386 57 24 2 263 319 217 271 5.69e-11 63.5
Msa0143830 MtrunA17_Chr8g0387501 61.404 57 22 0 263 319 130 186 3.37e-20 89.0
Msa0143830 MtrunA17_Chr7g0249301 49.398 83 38 2 245 324 272 353 4.85e-20 90.1
Msa0143830 MtrunA17_Chr7g0249301 54.386 57 24 2 263 319 63 117 3.11e-12 67.0
Msa0143830 MtrunA17_Chr7g0249311 48.421 95 46 2 243 335 373 466 6.15e-20 90.9
Msa0143830 MtrunA17_Chr7g0249311 50.000 68 29 3 252 319 172 234 4.18e-12 67.4
Msa0143830 MtrunA17_Chr2g0322391 47.561 82 43 0 246 327 333 414 6.33e-20 90.9
Msa0143830 MtrunA17_Chr7g0270831 39.860 143 60 7 186 321 152 275 1.49e-19 89.0
Msa0143830 MtrunA17_Chr7g0263531 51.471 68 32 1 254 321 353 419 1.73e-19 89.0
Msa0143830 MtrunA17_Chr7g0263531 47.619 84 41 3 254 336 180 261 4.24e-16 79.0
Msa0143830 MtrunA17_Chr2g0288871 48.649 74 38 0 246 319 289 362 3.10e-19 88.6
Msa0143830 MtrunA17_Chr7g0238921 38.261 115 64 4 207 319 71 180 9.64e-19 85.5
Msa0143830 MtrunA17_Chr5g0443131 45.679 81 43 1 249 329 144 223 9.67e-19 85.5
Msa0143830 MtrunA17_Chr4g0075201 48.649 74 38 0 246 319 251 324 1.37e-18 86.7
Msa0143830 MtrunA17_Chr3g0126391 40.441 136 54 8 207 334 84 200 1.88e-18 85.1
Msa0143830 MtrunA17_Chr3g0099641 43.421 76 43 0 246 321 235 310 1.98e-18 85.9
Msa0143830 MtrunA17_Chr1g0194481 43.529 85 45 2 237 319 131 214 2.11e-18 84.7
Msa0143830 MtrunA17_Chr3g0136961 48.611 72 37 0 248 319 124 195 2.35e-18 84.0
Msa0143830 MtrunA17_Chr4g0001361 53.846 65 30 0 255 319 155 219 2.45e-18 84.3
Msa0143830 MtrunA17_Chr1g0150801 50.704 71 34 1 249 319 89 158 2.83e-18 80.9
Msa0143830 MtrunA17_Chr4g0025061 53.731 67 31 0 263 329 361 427 3.03e-18 85.9
Msa0143830 MtrunA17_Chr2g0333851 44.048 84 43 1 236 319 147 226 4.09e-18 83.6
Msa0143830 MtrunA17_Chr4g0051181 39.796 98 40 1 241 319 203 300 5.04e-18 84.7
Msa0143830 MtrunA17_Chr7g0216891 46.988 83 36 2 243 323 204 280 5.81e-18 84.7
Msa0143830 MtrunA17_Chr1g0150281 52.632 57 27 0 263 319 141 197 6.35e-18 82.8
Msa0143830 MtrunA17_Chr2g0294231 42.045 88 50 1 245 332 186 272 1.09e-17 83.2
Msa0143830 MtrunA17_Chr3g0129361 45.783 83 41 2 248 327 127 208 1.10e-17 80.9
Msa0143830 MtrunA17_Chr8g0383351 48.052 77 35 2 248 320 142 217 1.23e-17 80.9
Msa0143830 MtrunA17_Chr5g0418781 43.902 82 45 1 238 319 100 180 1.69e-17 81.3
Msa0143830 MtrunA17_Chr8g0335811 45.783 83 41 2 241 320 130 211 1.91e-17 80.1
Msa0143830 MtrunA17_Chr7g0248721 31.056 161 94 5 181 326 45 203 2.28e-17 79.7
Msa0143830 MtrunA17_Chr4g0074001 57.895 57 23 1 263 319 360 415 3.44e-17 82.4
Msa0143830 MtrunA17_Chr8g0383251 43.182 88 44 2 239 321 80 166 3.56e-17 78.6
Msa0143830 MtrunA17_Chr4g0060271 52.542 59 28 0 263 321 256 314 8.65e-17 81.3
Msa0143830 MtrunA17_Chr7g0275531 43.529 85 44 2 237 317 91 175 1.20e-16 79.7
Msa0143830 MtrunA17_Chr7g0224801 49.231 65 32 1 258 322 89 152 1.84e-16 76.3
Msa0143830 MtrunA17_Chr2g0302391 52.542 59 28 0 263 321 212 270 2.58e-16 79.3
Msa0143830 MtrunA17_Chr4g0068541 44.595 74 40 1 246 319 192 264 2.84e-16 79.3
Msa0143830 MtrunA17_Chr3g0129321 45.000 80 43 1 240 319 96 174 3.21e-16 76.3
Msa0143830 MtrunA17_Chr5g0447701 49.296 71 35 1 249 319 239 308 3.52e-16 79.0
Msa0143830 MtrunA17_Chr4g0025051 50.746 67 33 0 263 329 336 402 4.03e-16 79.3
Msa0143830 MtrunA17_Chr1g0188941 44.578 83 45 1 243 325 32 113 8.98e-16 72.8
Msa0143830 MtrunA17_Chr1g0150271 46.774 62 33 0 260 321 99 160 2.54e-15 74.7
Msa0143830 MtrunA17_Chr5g0402931 60.345 58 20 2 262 319 123 177 3.39e-15 72.8
Msa0143830 MtrunA17_Chr8g0347251 41.573 89 49 2 235 320 108 196 6.21e-15 74.7
Msa0143830 MtrunA17_Chr6g0485431 49.254 67 32 2 263 328 155 220 8.86e-15 74.3
Msa0143830 MtrunA17_Chr1g0189391 58.065 62 24 2 259 319 94 154 1.22e-14 73.9
Msa0143830 MtrunA17_Chr8g0386241 39.706 68 40 1 259 326 100 166 1.17e-13 68.6
Msa0143830 MtrunA17_Chr8g0387981 36.538 104 52 4 225 317 89 189 1.34e-13 70.9
Msa0143830 MtrunA17_Chr5g0428351 42.857 84 39 3 236 317 164 240 2.20e-12 67.0
Msa0143830 MtrunA17_Chr4g0024391 42.169 83 46 1 245 327 214 294 4.96e-12 66.6
Msa0143830 MtrunA17_Chr2g0315361 35.294 102 64 1 218 317 104 205 1.22e-11 64.7
Msa0143830 MtrunA17_Chr3g0128671 40.244 82 39 2 238 317 111 184 1.96e-11 63.9
Msa0143830 MtrunA17_Chr7g0244981 36.842 95 56 3 226 317 86 179 3.57e-11 63.2
Msa0143830 MtrunA17_Chr2g0315381 38.667 75 44 1 245 317 127 201 7.10e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0143830 AT4G31550.1 60.057 353 98 12 1 339 1 324 7.74e-126 364
Msa0143830 AT4G31550.2 60.057 353 97 13 1 339 1 323 7.49e-125 361
Msa0143830 AT2G24570.1 59.312 349 103 13 1 339 1 320 1.11e-116 340
Msa0143830 AT4G31550.3 56.463 294 87 12 1 282 1 265 8.19e-89 267
Msa0143830 AT2G23320.1 39.429 350 132 9 1 321 1 299 1.29e-63 205
Msa0143830 AT3G04670.1 37.830 341 160 11 11 320 1 320 2.30e-57 189
Msa0143830 AT4G24240.1 61.290 155 50 3 167 321 196 340 2.60e-57 189
Msa0143830 AT2G30590.1 54.913 173 65 5 151 319 207 370 1.73e-55 186
Msa0143830 AT5G28650.1 35.821 335 175 9 11 320 1 320 4.05e-52 175
Msa0143830 AT2G23320.2 34.405 311 124 9 1 282 1 260 2.01e-35 130
Msa0143830 AT3G04670.2 33.225 307 153 11 11 286 1 286 3.38e-32 122
Msa0143830 AT4G24240.2 55.172 116 42 3 167 282 196 301 4.28e-30 117
Msa0143830 AT2G34830.1 55.682 88 34 2 237 319 185 272 9.15e-29 115
Msa0143830 AT2G34830.2 55.682 88 34 2 237 319 194 281 9.55e-29 115
Msa0143830 AT1G29280.1 57.609 92 32 3 235 319 40 131 2.48e-28 111
Msa0143830 AT1G30650.1 54.545 88 35 2 237 319 187 274 2.59e-27 111
Msa0143830 AT4G01250.1 57.143 91 33 2 229 319 101 185 4.81e-26 105
Msa0143830 AT3G58710.2 55.682 88 33 2 238 319 40 127 1.05e-25 104
Msa0143830 AT3G58710.1 55.682 88 33 2 238 319 41 128 3.19e-25 103
Msa0143830 AT5G52830.1 54.878 82 33 1 238 319 145 222 1.40e-24 102
Msa0143830 AT2G38470.1 57.317 82 31 2 246 324 343 423 6.87e-23 99.8
Msa0143830 AT2G38470.1 54.386 57 24 2 263 319 185 239 8.20e-12 66.6
Msa0143830 AT5G45050.2 50.000 82 37 1 238 319 1132 1209 1.86e-21 96.3
Msa0143830 AT5G45050.1 50.000 82 37 1 238 319 1160 1237 1.92e-21 96.3
Msa0143830 AT5G45050.4 50.000 82 37 1 238 319 1021 1098 2.00e-21 96.3
Msa0143830 AT1G13960.2 55.696 79 31 2 246 321 237 314 3.41e-21 93.6
Msa0143830 AT1G13960.2 54.839 62 25 3 259 319 72 131 8.58e-14 72.0
Msa0143830 AT2G03340.1 49.495 99 37 3 238 324 379 476 3.45e-21 94.7
Msa0143830 AT2G03340.1 50.746 67 30 3 256 321 243 307 6.08e-14 73.2
Msa0143830 AT5G07100.2 57.534 73 30 1 249 321 128 199 5.12e-21 90.1
Msa0143830 AT5G07100.2 46.970 66 31 2 254 319 19 80 9.99e-11 61.2
Msa0143830 AT5G07100.4 57.534 73 30 1 249 321 128 199 5.12e-21 90.1
Msa0143830 AT5G07100.4 46.970 66 31 2 254 319 19 80 9.99e-11 61.2
Msa0143830 AT5G07100.5 57.534 73 30 1 249 321 128 199 5.12e-21 90.1
Msa0143830 AT5G07100.5 46.970 66 31 2 254 319 19 80 9.99e-11 61.2
Msa0143830 AT5G07100.3 57.534 73 30 1 249 321 128 199 5.12e-21 90.1
Msa0143830 AT5G07100.3 46.970 66 31 2 254 319 19 80 9.99e-11 61.2
Msa0143830 AT1G13960.1 55.696 79 31 2 246 321 390 467 5.81e-21 94.0
Msa0143830 AT1G13960.1 54.839 62 25 3 259 319 225 284 8.94e-14 72.4
Msa0143830 AT2G04880.2 61.905 63 23 1 259 321 280 341 6.54e-21 93.6
Msa0143830 AT2G04880.1 61.905 63 23 1 259 321 304 365 7.77e-21 93.6
Msa0143830 AT4G23550.1 50.000 80 36 1 242 321 124 199 7.92e-21 91.7
Msa0143830 AT4G26640.5 54.545 77 31 2 248 321 188 263 1.14e-20 92.4
Msa0143830 AT4G26640.6 54.545 77 31 2 248 321 188 263 1.14e-20 92.4
Msa0143830 AT4G26640.4 54.545 77 31 2 248 321 188 263 1.14e-20 92.4
Msa0143830 AT4G26640.3 54.545 77 31 2 248 321 188 263 1.14e-20 92.4
Msa0143830 AT5G49520.1 51.351 74 35 1 246 319 205 277 1.45e-20 92.0
Msa0143830 AT5G07100.1 46.739 92 48 1 230 321 202 292 1.51e-20 90.9
Msa0143830 AT1G29860.1 48.148 81 41 1 246 326 120 199 1.63e-20 90.5
Msa0143830 AT4G26640.2 54.545 77 31 2 248 321 364 439 2.16e-20 92.4
Msa0143830 AT5G26170.1 51.389 72 34 1 249 320 100 170 2.18e-20 87.4
Msa0143830 AT4G26640.1 54.545 77 31 2 248 321 292 367 2.24e-20 92.0
Msa0143830 AT4G26640.7 54.545 77 31 2 248 321 324 399 2.39e-20 92.4
Msa0143830 AT5G56270.1 53.659 82 37 1 243 324 468 548 3.40e-20 92.0
Msa0143830 AT5G56270.1 52.632 57 25 2 263 319 274 328 5.39e-11 64.3
Msa0143830 AT4G18170.1 46.154 91 48 1 231 321 141 230 5.84e-20 89.4
Msa0143830 AT2G40740.1 34.532 139 78 3 182 317 102 230 9.09e-20 88.6
Msa0143830 AT2G37260.3 48.810 84 42 1 238 321 245 327 1.23e-19 89.0
Msa0143830 AT2G37260.3 53.448 58 25 2 263 320 86 141 3.03e-12 67.4
Msa0143830 AT2G40740.3 34.532 139 78 3 182 317 111 239 1.28e-19 88.2
Msa0143830 AT2G37260.2 48.810 84 42 1 238 321 243 325 1.30e-19 89.0
Msa0143830 AT2G37260.2 53.448 58 25 2 263 320 84 139 3.14e-12 67.4
Msa0143830 AT4G39410.1 47.126 87 42 2 237 320 195 280 1.85e-19 87.8
Msa0143830 AT2G37260.1 48.810 84 42 1 238 321 325 407 2.32e-19 89.0
Msa0143830 AT2G37260.1 53.448 58 25 2 263 320 166 221 2.71e-12 67.8
Msa0143830 AT4G04450.2 50.000 74 37 0 246 319 182 255 2.88e-19 88.6
Msa0143830 AT4G26440.1 51.220 82 39 1 243 324 353 433 2.91e-19 89.4
Msa0143830 AT4G26440.1 53.448 58 25 2 263 320 179 234 1.13e-11 66.2
Msa0143830 AT4G04450.1 50.000 74 37 0 246 319 276 349 5.19e-19 88.2
Msa0143830 AT2G47260.1 43.902 82 45 1 238 319 150 230 6.19e-19 86.7
Msa0143830 AT1G69310.4 48.837 86 39 3 237 319 120 203 6.32e-19 85.9
Msa0143830 AT1G69310.2 48.837 86 39 3 237 319 120 203 6.32e-19 85.9
Msa0143830 AT1G69310.1 48.837 86 39 3 237 319 120 203 6.32e-19 85.9
Msa0143830 AT4G31800.2 46.575 73 39 0 247 319 96 168 1.01e-18 84.7
Msa0143830 AT3G01080.2 53.165 79 33 2 246 321 325 402 1.31e-18 87.0
Msa0143830 AT3G01080.2 56.452 62 24 3 259 319 201 260 1.56e-14 74.7
Msa0143830 AT4G31800.1 46.575 73 39 0 247 319 161 233 1.43e-18 85.5
Msa0143830 AT3G01080.1 53.165 79 33 2 246 321 287 364 1.52e-18 86.7
Msa0143830 AT3G01080.1 56.452 62 24 3 259 319 163 222 1.88e-14 74.3
Msa0143830 AT1G62300.1 48.649 74 38 0 246 319 296 369 1.72e-18 86.7
Msa0143830 AT4G22070.4 48.649 74 38 0 246 319 281 354 1.87e-18 86.7
Msa0143830 AT4G22070.3 48.649 74 38 0 246 319 281 354 1.87e-18 86.7
Msa0143830 AT4G22070.2 48.649 74 38 0 246 319 281 354 1.87e-18 86.7
Msa0143830 AT4G22070.1 48.649 74 38 0 246 319 281 354 1.87e-18 86.7
Msa0143830 AT5G46350.1 50.685 73 35 1 249 321 170 241 2.67e-18 84.7
Msa0143830 AT5G15130.2 47.561 82 42 1 240 321 164 244 3.16e-18 85.9
Msa0143830 AT5G15130.1 47.561 82 42 1 240 321 206 286 3.31e-18 85.9
Msa0143830 AT5G45260.1 33.133 166 79 4 156 319 1132 1267 7.86e-18 85.5
Msa0143830 AT2G44745.1 41.414 99 54 2 224 319 104 201 1.08e-17 81.3
Msa0143830 AT3G62340.1 47.500 80 41 1 240 319 96 174 1.28e-17 82.0
Msa0143830 AT4G01720.1 47.368 76 40 0 246 321 223 298 1.98e-17 83.6
Msa0143830 AT1G68150.1 46.914 81 40 1 263 340 236 316 6.43e-17 81.3
Msa0143830 AT1G64000.1 40.449 89 49 2 241 326 90 177 8.83e-17 78.2
Msa0143830 AT4G30935.1 52.542 59 27 1 263 321 332 389 9.40e-17 81.3
Msa0143830 AT1G55600.1 44.156 77 42 1 243 319 288 363 9.44e-17 81.3
Msa0143830 AT5G41570.1 42.353 85 45 2 245 326 78 161 1.22e-16 77.4
Msa0143830 AT2G46130.1 42.857 84 44 2 246 326 11 93 1.89e-16 74.7
Msa0143830 AT1G18860.1 48.101 79 40 1 241 319 219 296 2.15e-16 80.5
Msa0143830 AT5G13080.1 46.053 76 39 2 258 333 63 136 2.20e-16 75.5
Msa0143830 AT1G80840.1 38.776 98 54 2 236 328 116 212 2.84e-16 78.6
Msa0143830 AT2G25000.2 44.595 74 41 0 247 320 88 161 3.79e-16 77.0
Msa0143830 AT2G25000.4 44.595 74 41 0 247 320 88 161 3.79e-16 77.0
Msa0143830 AT2G25000.3 44.595 74 41 0 247 320 110 183 6.74e-16 76.6
Msa0143830 AT2G30250.1 43.023 86 45 2 244 326 307 391 8.86e-16 78.2
Msa0143830 AT3G01970.1 48.438 64 32 1 258 321 61 123 9.55e-16 73.9
Msa0143830 AT2G25000.1 44.595 74 41 0 247 320 131 204 9.60e-16 76.6
Msa0143830 AT2G21900.1 54.386 57 25 1 263 319 110 165 9.81e-16 75.1
Msa0143830 AT5G64810.1 45.070 71 38 1 249 319 97 166 2.15e-15 73.9
Msa0143830 AT3G01080.3 57.895 57 22 2 263 319 206 260 9.11e-15 74.7
Msa0143830 AT5G43290.1 50.667 75 33 2 245 319 100 170 1.00e-14 73.9
Msa0143830 AT1G69310.3 46.512 86 37 4 237 319 120 199 1.33e-14 73.6
Msa0143830 AT4G11070.2 43.373 83 44 2 238 317 84 166 2.65e-13 69.7
Msa0143830 AT4G11070.1 43.373 83 44 2 238 317 116 198 2.93e-13 70.1
Msa0143830 AT1G69810.1 37.374 99 53 2 222 319 171 261 7.05e-13 69.3
Msa0143830 AT1G69810.2 37.374 99 53 2 222 319 113 203 8.00e-13 68.9
Msa0143830 AT3G56400.1 32.743 113 71 3 209 317 66 177 1.22e-12 67.8
Msa0143830 AT2G46130.2 39.286 84 43 2 246 326 11 89 1.95e-12 63.5
Msa0143830 AT1G66560.1 49.153 59 28 1 261 317 102 160 2.25e-12 66.6
Msa0143830 AT5G24110.1 47.368 57 28 1 263 317 114 170 2.45e-12 67.0
Msa0143830 AT2G46400.1 35.789 95 57 2 227 317 67 161 3.12e-12 66.6
Msa0143830 AT4G23810.1 33.929 112 71 2 209 317 104 215 3.98e-12 66.6
Msa0143830 AT4G12020.6 50.877 57 26 2 263 319 469 523 3.24e-11 65.1
Msa0143830 AT4G12020.8 50.877 57 26 2 263 319 469 523 3.24e-11 65.1
Msa0143830 AT4G12020.7 50.877 57 26 2 263 319 469 523 3.36e-11 65.1
Msa0143830 AT4G12020.1 50.877 57 26 2 263 319 469 523 3.49e-11 65.1
Msa0143830 AT4G12020.9 50.877 57 26 2 263 319 469 523 3.49e-11 65.1
Msa0143830 AT4G12020.10 50.877 57 26 2 263 319 469 523 3.51e-11 65.1
Msa0143830 AT4G12020.3 50.877 57 26 2 263 319 469 523 3.64e-11 65.1
Msa0143830 AT4G12020.2 50.877 57 26 2 263 319 469 523 3.87e-11 65.1
Msa0143830 AT4G12020.5 50.877 57 26 2 263 319 402 456 3.92e-11 65.1
Msa0143830 AT4G12020.4 50.877 57 26 2 263 319 469 523 4.05e-11 65.1
Msa0143830 AT4G12020.11 50.877 57 26 2 263 319 469 523 5.16e-11 64.7
Msa0143830 AT2G40750.1 34.444 90 49 2 230 317 128 209 6.37e-11 63.2

Find 126 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCCTCTTTCTAAAATA+TGG 0.192604 1_4:-2907575 Msa0143830:exon
CGCTCAACGTGTTTCCTTGC+TGG 0.192745 1_4:+2905381 None:intergenic
GAACATTCCGATGACGTTTC+AGG 0.218659 1_4:-2906890 Msa0143830:CDS
AGAGAGAGGGAGGGAGGAAA+TGG 0.242866 1_4:+2907649 None:intergenic
GTATTTGAGTCAACGTAATA+AGG 0.271448 1_4:-2905255 Msa0143830:exon
TTAATATAGAGATGGAAAAT+TGG 0.281523 1_4:-2905087 Msa0143830:three_prime_UTR
TTTATGTCATCTGCTATTAC+TGG 0.300028 1_4:-2907040 Msa0143830:CDS
CGCATCCGGGATTGTGGGTT+TGG 0.306368 1_4:-2905277 Msa0143830:CDS
AAATTGTTGAAGAGTTAAAA+TGG 0.319358 1_4:+2907609 None:intergenic
GAGCTCAAAACGACGTCGTT+TGG 0.354917 1_4:+2907139 None:intergenic
TTCTGATGCAGCCTCTTGTA+TGG 0.355564 1_4:+2907510 None:intergenic
GAACCGGGGCGCGTCTGAAC+CGG 0.362386 1_4:+2907356 None:intergenic
GAGTGAAAGGTTGAGGGATG+TGG 0.364284 1_4:+2907680 None:intergenic
GGCGCGTGACGCACGGAGAT+TGG 0.371570 1_4:+2907214 None:intergenic
GAGAGAGGGAGGGAGGAAAT+GGG 0.373085 1_4:+2907650 None:intergenic
TATAAATCTTACCGTGGATA+TGG 0.383323 1_4:+2905526 None:intergenic
GACGGAGAAGGAAAGTGTTT+TGG 0.384362 1_4:+2907256 None:intergenic
AGGGAGGGAGGAAATGGGTT+TGG 0.392281 1_4:+2907655 None:intergenic
TTGGTTGATGAGAAAGGGTT+AGG 0.397259 1_4:+2907461 None:intergenic
GAGATAGCTGATGTCGCCGC+TGG 0.407243 1_4:+2906971 None:intergenic
GAGAAGAGGAAAAGAGAGAG+AGG 0.420812 1_4:+2907635 None:intergenic
ACTGGTGATGGAAGCGTTAA+CGG 0.421732 1_4:-2907022 Msa0143830:CDS
CACTATTCAAGCTGCGATGC+AGG 0.421891 1_4:-2905304 Msa0143830:CDS
AAAATTATGAGTGGAAGTTA+AGG 0.423088 1_4:-2905154 Msa0143830:three_prime_UTR
GCGATGCAGGAGAACGCATC+CGG 0.423327 1_4:-2905291 Msa0143830:CDS
GCTCAACGTGTTTCCTTGCT+GGG 0.423889 1_4:+2905382 None:intergenic
GCGTCTGAACCGGGCGTGAC+CGG 0.426753 1_4:+2907366 None:intergenic
AGGGATGTGGAGATATATAA+AGG 0.426967 1_4:+2907693 None:intergenic
AACATTCCGATGACGTTTCA+GGG 0.431021 1_4:-2906889 Msa0143830:CDS
ATTGAGTTGGTTGATGAGAA+AGG 0.438129 1_4:+2907455 None:intergenic
CTTGGAGGAAAGTGGGAGAA+TGG 0.444178 1_4:-2905221 Msa0143830:three_prime_UTR
TATTTGAGTCAACGTAATAA+GGG 0.444413 1_4:-2905254 Msa0143830:exon
CGGCGGAAAACCGCCGCTAT+CGG 0.446685 1_4:-2906948 Msa0143830:CDS
AGAGGAAAAGAGAGAGAGGG+AGG 0.448691 1_4:+2907639 None:intergenic
AATAATGGTTGGCAAGACTT+TGG 0.450809 1_4:+2905030 None:intergenic
GAAAAGAGAGAGAGGGAGGG+AGG 0.452154 1_4:+2907643 None:intergenic
ATCTCTTTACTTAACCGAAC+CGG 0.452961 1_4:-2907385 Msa0143830:CDS
AGTTGAGTGTTTAATTGAGT+TGG 0.455065 1_4:+2907442 None:intergenic
ATGCTGATTGTAACGTATGA+AGG 0.457248 1_4:-2905339 Msa0143830:CDS
GAGTACTCATGGCGGAAATA+CGG 0.458622 1_4:-2905571 Msa0143830:CDS
GACAGGGTTGGTGTTTGAAC+CGG 0.458926 1_4:+2907283 None:intergenic
CTGGTGATGGAAGCGTTAAC+GGG 0.460991 1_4:-2907021 Msa0143830:CDS
TTGAGTTGGTTGATGAGAAA+GGG 0.466292 1_4:+2907456 None:intergenic
TTTGGAAGAGTGAAAGGTTG+AGG 0.471055 1_4:+2907673 None:intergenic
GTACTCGTCCGGTGGTATAT+CGG 0.473843 1_4:+2905588 None:intergenic
TACGTTACAATCAGCATCGT+TGG 0.473963 1_4:+2905345 None:intergenic
CGCCCGGTTCAGACGCGCCC+CGG 0.476428 1_4:-2907359 Msa0143830:CDS
GATTCAATCCACTCCTTCAC+CGG 0.477697 1_4:-2907302 Msa0143830:CDS
TTGGAAGAGTGAAAGGTTGA+GGG 0.486060 1_4:+2907674 None:intergenic
GGAGAACGCATCCGGGATTG+TGG 0.492453 1_4:-2905283 Msa0143830:CDS
GAAGATGAGGATGAATGAAC+CGG 0.494512 1_4:+2907340 None:intergenic
CGGCGGTGCCGTCCAAGAAA+AGG 0.499093 1_4:-2906928 Msa0143830:CDS
AACCGGGGCGCGTCTGAACC+GGG 0.500032 1_4:+2907357 None:intergenic
TCATCTGCTATTACTGGTGA+TGG 0.500505 1_4:-2907034 Msa0143830:CDS
TGAACCGGGCGTGACCGGTT+CGG 0.504434 1_4:+2907371 None:intergenic
AATCAGCATCGTTGGATCGT+CGG 0.504895 1_4:+2905353 None:intergenic
AAATATGGCAGTGGAACTCA+TGG 0.506689 1_4:-2907560 Msa0143830:exon
TACAAGTGTAGTACAGTGAG+AGG 0.510799 1_4:-2905408 Msa0143830:CDS
GAGGAAAAGAGAGAGAGGGA+GGG 0.516020 1_4:+2907640 None:intergenic
ATTGGCGCCGGTGACAGTGC+AGG 0.516466 1_4:+2907232 None:intergenic
ATCCTCATCTTCATCACCAC+CGG 0.518007 1_4:-2907329 Msa0143830:CDS
ATTATGAGTGGAAGTTAAGG+TGG 0.519240 1_4:-2905151 Msa0143830:three_prime_UTR
CGGAAAACCGCCGCTATCGG+CGG 0.520458 1_4:-2906945 Msa0143830:CDS
AATCTCCGTGCGTCACGCGC+CGG 0.525708 1_4:-2907212 Msa0143830:CDS
AGTTAAAATGGCATGAGAAG+AGG 0.527637 1_4:+2907621 None:intergenic
AAGAAAAGGTGTCATGATCA+TGG 0.529135 1_4:-2906914 Msa0143830:CDS
TCCGTCACCTGCACTGTCAC+CGG 0.537546 1_4:-2907239 Msa0143830:CDS
GGAAGCGTTAACGGGAAACA+AGG 0.537738 1_4:-2907013 Msa0143830:CDS
GAGAACGCATCCGGGATTGT+GGG 0.542352 1_4:-2905282 Msa0143830:CDS
GGATATGGTGATCCCTTGAT+CGG 0.543035 1_4:+2905541 None:intergenic
ATACAAGAGGCTGCATCAGA+AGG 0.544462 1_4:-2907508 Msa0143830:CDS
ATACGGTCAGAAACCGATCA+AGG 0.544971 1_4:-2905554 Msa0143830:CDS
CTCTTTCTAAAATATGGCAG+TGG 0.548169 1_4:-2907569 Msa0143830:exon
GTTGGTGTTTGAACCGGTGA+AGG 0.548366 1_4:+2907289 None:intergenic
AGAAGAGGAAAAGAGAGAGA+GGG 0.550356 1_4:+2907636 None:intergenic
TTCCGCCATGAGTACTCGTC+CGG 0.550529 1_4:+2905577 None:intergenic
TTAACCGAACCGGTCACGCC+CGG 0.551066 1_4:-2907375 Msa0143830:CDS
GCTCGCCGGCGCGTGACGCA+CGG 0.552645 1_4:+2907207 None:intergenic
TGCTGATTGTAACGTATGAA+GGG 0.555435 1_4:-2905338 Msa0143830:CDS
AATGGGTTTGGAAGAGTGAA+AGG 0.555725 1_4:+2907667 None:intergenic
TTATGAGTGGAAGTTAAGGT+GGG 0.557236 1_4:-2905150 Msa0143830:three_prime_UTR
CGATGCAGGAGAACGCATCC+GGG 0.559528 1_4:-2905290 Msa0143830:CDS
AAATACCAAACCCACAATCC+CGG 0.560277 1_4:+2905272 None:intergenic
TTGGACGGCACCGCCGATAG+CGG 0.561363 1_4:+2906935 None:intergenic
GCGGCGACATCAGCTATCTC+CGG 0.561423 1_4:-2906968 Msa0143830:CDS
GAAGAGGACTGTGAGAGTAC+CGG 0.569882 1_4:-2905629 Msa0143830:CDS
GACGGCACCGCCGATAGCGG+CGG 0.571524 1_4:+2906938 None:intergenic
AGATAGCTGATGTCGCCGCT+GGG 0.575991 1_4:+2906972 None:intergenic
TGCGGTTGAACAAAGCTCGC+CGG 0.578616 1_4:+2907193 None:intergenic
GGAGTGGATTGAATCTGAAC+CGG 0.578656 1_4:+2907310 None:intergenic
TGACGCACGGAGATTGGCGC+CGG 0.582468 1_4:+2907220 None:intergenic
AAGATGAGGATGAATGAACC+GGG 0.585262 1_4:+2907341 None:intergenic
GAACTTAGAAACGGTGTGGT+CGG 0.585451 1_4:+2907417 None:intergenic
CAGTGAGAGGGTGCCCAGCA+AGG 0.588389 1_4:-2905395 Msa0143830:CDS
GACAGTGCAGGTGACGGAGA+AGG 0.589986 1_4:+2907244 None:intergenic
CGCCATGAGTACTCGTCCGG+TGG 0.590482 1_4:+2905580 None:intergenic
GCCGGTGACAGTGCAGGTGA+CGG 0.596080 1_4:+2907238 None:intergenic
AGTGTCATGCTGTGTGGTTG+CGG 0.596455 1_4:+2907175 None:intergenic
TACCACCGGACGAGTACTCA+TGG 0.597468 1_4:-2905582 Msa0143830:CDS
ATCAGAAGGACTCAAAGGTA+TGG 0.599816 1_4:-2907494 Msa0143830:CDS
GCGGTCTTTGAACTTATCGC+CGG 0.605125 1_4:+2905610 None:intergenic
AATATGGCAGTGGAACTCAT+GGG 0.612087 1_4:-2907559 Msa0143830:CDS
TACGGTCAGAAACCGATCAA+GGG 0.612371 1_4:-2905553 Msa0143830:CDS
ATTCGACCCTGAAACGTCAT+CGG 0.616411 1_4:+2906883 None:intergenic
GCTGCATCAGAAGGACTCAA+AGG 0.616681 1_4:-2907499 Msa0143830:CDS
CGAGAATTCAAGCTCAACCA+TGG 0.618884 1_4:+2907102 None:intergenic
ATTTGAGTCAACGTAATAAG+GGG 0.619420 1_4:-2905253 Msa0143830:exon
TATGAGTGGAAGTTAAGGTG+GGG 0.623067 1_4:-2905149 Msa0143830:three_prime_UTR
TGTTTGAACCGGTGAAGGAG+TGG 0.635060 1_4:+2907294 None:intergenic
AGTGCCACTGTGTCAAGAGA+AGG 0.645447 1_4:-2906859 Msa0143830:intron
GGTTGAGCTTGAATTCTCGA+AGG 0.647277 1_4:-2907098 Msa0143830:CDS
GGAGGAAAGTGGGAGAATGG+AGG 0.648081 1_4:-2905218 Msa0143830:three_prime_UTR
GCTGATTGTAACGTATGAAG+GGG 0.650464 1_4:-2905337 Msa0143830:CDS
TCAAGGGATCACCATATCCA+CGG 0.651372 1_4:-2905537 Msa0143830:intron
ACAAGTGTAGTACAGTGAGA+GGG 0.657147 1_4:-2905407 Msa0143830:CDS
AAAGACCGCCGATATACCAC+CGG 0.663684 1_4:-2905596 Msa0143830:CDS
ATATGGCAGTGGAACTCATG+GGG 0.666077 1_4:-2907558 Msa0143830:CDS
GCGACATCAGCTATCTCCGG+CGG 0.667774 1_4:-2906965 Msa0143830:CDS
AACCGGTGGTGATGAAGATG+AGG 0.672181 1_4:+2907327 None:intergenic
CTCGTCCGGTGGTATATCGG+CGG 0.695312 1_4:+2905591 None:intergenic
GTGGATTGAATCTGAACCGG+TGG 0.703786 1_4:+2907313 None:intergenic
GAAGCGTTAACGGGAAACAA+GGG 0.708559 1_4:-2907012 Msa0143830:CDS
AAATCGAGTGTCATGCTGTG+TGG 0.710920 1_4:+2907169 None:intergenic
TGTACCTTCTCTTGACACAG+TGG 0.717082 1_4:+2906855 None:intergenic
AGATGAGGATGAATGAACCG+GGG 0.738996 1_4:+2907342 None:intergenic
CACCGGACGAGTACTCATGG+CGG 0.773189 1_4:-2905579 Msa0143830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTTTTGATTTTTGAT+TGG - chr1_4:2906198-2906217 Msa0143830:intron 10.0%
!! ATTAATTAGAAATAAAGAAA+GGG - chr1_4:2906246-2906265 Msa0143830:intron 10.0%
!!! ATTTTTTTTCAGAAAAAATA+GGG - chr1_4:2907094-2907113 Msa0143830:CDS 10.0%
!!! AAAATATTTTAATATAGAGA+TGG - chr1_4:2907652-2907671 Msa0143830:five_prime_UTR 10.0%
!! GTAAAAATATCAAAATTGTT+AGG + chr1_4:2906147-2906166 None:intergenic 15.0%
!!! AACAATTTTGATATTTTTAC+CGG - chr1_4:2906147-2906166 Msa0143830:intron 15.0%
!! CATTAATTAGAAATAAAGAA+AGG - chr1_4:2906245-2906264 Msa0143830:intron 15.0%
!! CATAAGTCATAATAAAAAAT+GGG + chr1_4:2906604-2906623 None:intergenic 15.0%
!! TCATAAGTCATAATAAAAAA+TGG + chr1_4:2906605-2906624 None:intergenic 15.0%
!!! GATTTTTTTTCAGAAAAAAT+AGG - chr1_4:2907093-2907112 Msa0143830:CDS 15.0%
!! AAATTGTTGAAGAGTTAAAA+TGG + chr1_4:2905141-2905160 None:intergenic 20.0%
!!! CTTTTTGTTCATCTATTTTT+GGG + chr1_4:2905217-2905236 None:intergenic 20.0%
!! TTTGTCATTATGTTAATCTA+CGG + chr1_4:2906053-2906072 None:intergenic 20.0%
!! TATGAGTTCAAATTAAATTG+AGG - chr1_4:2906620-2906639 Msa0143830:intron 20.0%
!! ATGAGTTCAAATTAAATTGA+GGG - chr1_4:2906621-2906640 Msa0143830:intron 20.0%
!!! ATATCATTTGATTCAAGTTT+TGG - chr1_4:2906669-2906688 Msa0143830:intron 20.0%
!!! TAGTAATGTTTTAGTTAACT+TGG - chr1_4:2906932-2906951 Msa0143830:CDS 20.0%
!! ATAATAGTCAACATAGTTAA+CGG + chr1_4:2907267-2907286 None:intergenic 20.0%
!!! TTATTCTTTCTTTTAATCAG+AGG - chr1_4:2907312-2907331 Msa0143830:CDS 20.0%
!!! TTTTGTTAGAAAATTATGAG+TGG - chr1_4:2907584-2907603 Msa0143830:five_prime_UTR 20.0%
!! TTAATATAGAGATGGAAAAT+TGG - chr1_4:2907660-2907679 Msa0143830:five_prime_UTR 20.0%
!!! TTCATCCTCTTTCTAAAATA+TGG - chr1_4:2905172-2905191 Msa0143830:three_prime_UTR 25.0%
!! GCTTTTTGTTCATCTATTTT+TGG + chr1_4:2905218-2905237 None:intergenic 25.0%
!!! GAGTTTTTTGAACTTAGAAA+CGG + chr1_4:2905342-2905361 None:intergenic 25.0%
! ATTCAAAGGTAAACTCTAAA+AGG + chr1_4:2905955-2905974 None:intergenic 25.0%
!!! TTTTAGAGTTTACCTTTGAA+TGG - chr1_4:2905954-2905973 Msa0143830:intron 25.0%
!!! TTTTGATATTTTTACCGGTT+AGG - chr1_4:2906152-2906171 Msa0143830:intron 25.0%
! TAGAAATAAAGAAAGGGAAA+AGG - chr1_4:2906252-2906271 Msa0143830:intron 25.0%
! TGTGGTTAAAATGCTTTAAT+AGG - chr1_4:2906357-2906376 Msa0143830:intron 25.0%
!!! TCCTATTTTGAATTACTTCA+GGG + chr1_4:2906717-2906736 None:intergenic 25.0%
!!! ATCCTATTTTGAATTACTTC+AGG + chr1_4:2906718-2906737 None:intergenic 25.0%
! AACATTACTATGATCTTATG+CGG + chr1_4:2906922-2906941 None:intergenic 25.0%
! ATAAATCAACGTTAGAAAAC+AGG + chr1_4:2907296-2907315 None:intergenic 25.0%
! TATTTGAGTCAACGTAATAA+GGG - chr1_4:2907493-2907512 Msa0143830:CDS 25.0%
! AATAAGGGGAATTAAAAACT+TGG - chr1_4:2907508-2907527 Msa0143830:CDS 25.0%
! AAAATTATGAGTGGAAGTTA+AGG - chr1_4:2907593-2907612 Msa0143830:five_prime_UTR 25.0%
AGTTGAGTGTTTAATTGAGT+TGG + chr1_4:2905308-2905327 None:intergenic 30.0%
TTTATGTCATCTGCTATTAC+TGG - chr1_4:2905707-2905726 Msa0143830:intron 30.0%
ATTATGTTAATCTACGGAGT+AGG + chr1_4:2906047-2906066 None:intergenic 30.0%
!! ATCACTTGTATGAGTTTTGA+TGG + chr1_4:2906079-2906098 None:intergenic 30.0%
AAACGTTAATGCATGTAATC+GGG + chr1_4:2906122-2906141 None:intergenic 30.0%
CAAACGTTAATGCATGTAAT+CGG + chr1_4:2906123-2906142 None:intergenic 30.0%
AAAGAAAGGGAAAAGGTTAA+TGG - chr1_4:2906259-2906278 Msa0143830:intron 30.0%
TAAGTGAAGGGAATTGAAAA+AGG + chr1_4:2906504-2906523 None:intergenic 30.0%
AGTCAAAGCAATTAAGTGAA+GGG + chr1_4:2906516-2906535 None:intergenic 30.0%
ACCCTGAAGTAATTCAAAAT+AGG - chr1_4:2906713-2906732 Msa0143830:intron 30.0%
AAGTTAAGTTAGACCTAGAT+TGG - chr1_4:2906852-2906871 Msa0143830:intron 30.0%
AAAACATTCATGGTCATTCA+TGG + chr1_4:2906897-2906916 None:intergenic 30.0%
AGTATTTCCCATATTCCAAT+TGG + chr1_4:2906974-2906993 None:intergenic 30.0%
TATAAATCTTACCGTGGATA+TGG + chr1_4:2907224-2907243 None:intergenic 30.0%
ATTGTGTATAAATCTTACCG+TGG + chr1_4:2907230-2907249 None:intergenic 30.0%
GTATTTGAGTCAACGTAATA+AGG - chr1_4:2907492-2907511 Msa0143830:CDS 30.0%
ATTTGAGTCAACGTAATAAG+GGG - chr1_4:2907494-2907513 Msa0143830:CDS 30.0%
ATTAAAAACTTGGAGGAAAG+TGG - chr1_4:2907518-2907537 Msa0143830:CDS 30.0%
TTAAAAACTTGGAGGAAAGT+GGG - chr1_4:2907519-2907538 Msa0143830:CDS 30.0%
AGGGATGTGGAGATATATAA+AGG + chr1_4:2905057-2905076 None:intergenic 35.0%
AGTTAAAATGGCATGAGAAG+AGG + chr1_4:2905129-2905148 None:intergenic 35.0%
!! CACTGCCATATTTTAGAAAG+AGG + chr1_4:2905180-2905199 None:intergenic 35.0%
!! CTCTTTCTAAAATATGGCAG+TGG - chr1_4:2905178-2905197 Msa0143830:three_prime_UTR 35.0%
TGAACAAAAAGCCATACAAG+AGG - chr1_4:2905226-2905245 Msa0143830:three_prime_UTR 35.0%
!! TTGAGTTGGTTGATGAGAAA+GGG + chr1_4:2905294-2905313 None:intergenic 35.0%
!! ATTGAGTTGGTTGATGAGAA+AGG + chr1_4:2905295-2905314 None:intergenic 35.0%
! TTTTGAACTTAGAAACGGTG+TGG + chr1_4:2905337-2905356 None:intergenic 35.0%
ATCTCTTTACTTAACCGAAC+CGG - chr1_4:2905362-2905381 Msa0143830:CDS 35.0%
!!! AAAGTGTTTTGGTAGAGACA+GGG + chr1_4:2905483-2905502 None:intergenic 35.0%
! ATGATCATGACACCTTTTCT+TGG + chr1_4:2905834-2905853 None:intergenic 35.0%
!! AAGAAAAGGTGTCATGATCA+TGG - chr1_4:2905833-2905852 Msa0143830:intron 35.0%
ATTGAGTGAAACGCAGATAA+AGG + chr1_4:2905926-2905945 None:intergenic 35.0%
AGAGTTTACCTTTGAATGGA+AGG - chr1_4:2905958-2905977 Msa0143830:intron 35.0%
! TGTTTCTGATGTCCAATATG+TGG - chr1_4:2905981-2906000 Msa0143830:intron 35.0%
TCCACATACTTTAACCTAAC+CGG + chr1_4:2906169-2906188 None:intergenic 35.0%
GTTAGGTTAAAGTATGTGGA+CGG - chr1_4:2906169-2906188 Msa0143830:intron 35.0%
GTGAACGAGTCAAACAAAAA+AGG + chr1_4:2906226-2906245 None:intergenic 35.0%
TGAAAGTGACAAGACAACAT+AGG - chr1_4:2906392-2906411 Msa0143830:intron 35.0%
GAAAGTGACAAGACAACATA+GGG - chr1_4:2906393-2906412 Msa0143830:intron 35.0%
CAGTCAAAGCAATTAAGTGA+AGG + chr1_4:2906517-2906536 None:intergenic 35.0%
AAAATAGGATCCCATGAGTT+AGG - chr1_4:2906728-2906747 Msa0143830:intron 35.0%
AAATAGGATCCCATGAGTTA+GGG - chr1_4:2906729-2906748 Msa0143830:intron 35.0%
! ATGGTCGTTCGTTTAAAATC+GGG + chr1_4:2906878-2906897 None:intergenic 35.0%
! CATGGTCGTTCGTTTAAAAT+CGG + chr1_4:2906879-2906898 None:intergenic 35.0%
TTATGCGGTCAAAACATTCA+TGG + chr1_4:2906907-2906926 None:intergenic 35.0%
! ACGTTTTACTCCTATCCAAT+TGG - chr1_4:2906956-2906975 Msa0143830:CDS 35.0%
ACTCCTATCCAATTGGAATA+TGG - chr1_4:2906963-2906982 Msa0143830:CDS 35.0%
CTCCTATCCAATTGGAATAT+GGG - chr1_4:2906964-2906983 Msa0143830:CDS 35.0%
TTCCCATATTCCAATTGGAT+AGG + chr1_4:2906969-2906988 None:intergenic 35.0%
TCAGAAAAAATAGGGTGAAG+AGG - chr1_4:2907102-2907121 Msa0143830:CDS 35.0%
! ATGCTGATTGTAACGTATGA+AGG - chr1_4:2907408-2907427 Msa0143830:CDS 35.0%
! TGCTGATTGTAACGTATGAA+GGG - chr1_4:2907409-2907428 Msa0143830:CDS 35.0%
AAGGGGAATTAAAAACTTGG+AGG - chr1_4:2907511-2907530 Msa0143830:CDS 35.0%
ATTATGAGTGGAAGTTAAGG+TGG - chr1_4:2907596-2907615 Msa0143830:five_prime_UTR 35.0%
TTATGAGTGGAAGTTAAGGT+GGG - chr1_4:2907597-2907616 Msa0143830:five_prime_UTR 35.0%
TTGGAAGAGTGAAAGGTTGA+GGG + chr1_4:2905076-2905095 None:intergenic 40.0%
TTTGGAAGAGTGAAAGGTTG+AGG + chr1_4:2905077-2905096 None:intergenic 40.0%
! AATGGGTTTGGAAGAGTGAA+AGG + chr1_4:2905083-2905102 None:intergenic 40.0%
AGAAGAGGAAAAGAGAGAGA+GGG + chr1_4:2905114-2905133 None:intergenic 40.0%
AAATATGGCAGTGGAACTCA+TGG - chr1_4:2905187-2905206 Msa0143830:three_prime_UTR 40.0%
AATATGGCAGTGGAACTCAT+GGG - chr1_4:2905188-2905207 Msa0143830:three_prime_UTR 40.0%
ATCAGAAGGACTCAAAGGTA+TGG - chr1_4:2905253-2905272 Msa0143830:exon 40.0%
!! TTGGTTGATGAGAAAGGGTT+AGG + chr1_4:2905289-2905308 None:intergenic 40.0%
AAGATGAGGATGAATGAACC+GGG + chr1_4:2905409-2905428 None:intergenic 40.0%
GAAGATGAGGATGAATGAAC+CGG + chr1_4:2905410-2905429 None:intergenic 40.0%
!!! GAAAGTGTTTTGGTAGAGAC+AGG + chr1_4:2905484-2905503 None:intergenic 40.0%
CTCAAACACGAAAAACTCCA+TGG - chr1_4:2905628-2905647 Msa0143830:CDS 40.0%
TCATCTGCTATTACTGGTGA+TGG - chr1_4:2905713-2905732 Msa0143830:intron 40.0%
! TTCGATTTTTCTCAACCCAG+CGG - chr1_4:2905760-2905779 Msa0143830:intron 40.0%
! TCATGACACCTTTTCTTGGA+CGG + chr1_4:2905830-2905849 None:intergenic 40.0%
AACATTCCGATGACGTTTCA+GGG - chr1_4:2905858-2905877 Msa0143830:intron 40.0%
! AAACGCAGATAAAGGAGTGT+AGG + chr1_4:2905918-2905937 None:intergenic 40.0%
CAGAAACACCTTCCATTCAA+AGG + chr1_4:2905969-2905988 None:intergenic 40.0%
TCGCAAACACTACCACATAT+TGG + chr1_4:2905996-2906015 None:intergenic 40.0%
ACCGGTTAGGTTAAAGTATG+TGG - chr1_4:2906165-2906184 Msa0143830:intron 40.0%
! ACGTTTGGAGTCAACGATTT+CGG - chr1_4:2906328-2906347 Msa0143830:intron 40.0%
! TATTTTGCTAACATGCGCTG+GGG + chr1_4:2906575-2906594 None:intergenic 40.0%
! CTATTTTGCTAACATGCGCT+GGG + chr1_4:2906576-2906595 None:intergenic 40.0%
! ACTATTTTGCTAACATGCGC+TGG + chr1_4:2906577-2906596 None:intergenic 40.0%
ACTACGAAACCCTAACTCAT+GGG + chr1_4:2906741-2906760 None:intergenic 40.0%
! GTTTAAAATCGGGCCAATCT+AGG + chr1_4:2906868-2906887 None:intergenic 40.0%
TACAAGTGTAGTACAGTGAG+AGG - chr1_4:2907339-2907358 Msa0143830:CDS 40.0%
ACAAGTGTAGTACAGTGAGA+GGG - chr1_4:2907340-2907359 Msa0143830:CDS 40.0%
TACGTTACAATCAGCATCGT+TGG + chr1_4:2907405-2907424 None:intergenic 40.0%
GCTGATTGTAACGTATGAAG+GGG - chr1_4:2907410-2907429 Msa0143830:CDS 40.0%
AAATACCAAACCCACAATCC+CGG + chr1_4:2907478-2907497 None:intergenic 40.0%
TATGAGTGGAAGTTAAGGTG+GGG - chr1_4:2907598-2907617 Msa0143830:five_prime_UTR 40.0%
GAGAAGAGGAAAAGAGAGAG+AGG + chr1_4:2905115-2905134 None:intergenic 45.0%
ATATGGCAGTGGAACTCATG+GGG - chr1_4:2905189-2905208 Msa0143830:three_prime_UTR 45.0%
TTCTGATGCAGCCTCTTGTA+TGG + chr1_4:2905240-2905259 None:intergenic 45.0%
ATACAAGAGGCTGCATCAGA+AGG - chr1_4:2905239-2905258 Msa0143830:three_prime_UTR 45.0%
GAACTTAGAAACGGTGTGGT+CGG + chr1_4:2905333-2905352 None:intergenic 45.0%
AGATGAGGATGAATGAACCG+GGG + chr1_4:2905408-2905427 None:intergenic 45.0%
ATCCTCATCTTCATCACCAC+CGG - chr1_4:2905418-2905437 Msa0143830:CDS 45.0%
!! GGAGTGGATTGAATCTGAAC+CGG + chr1_4:2905440-2905459 None:intergenic 45.0%
GATTCAATCCACTCCTTCAC+CGG - chr1_4:2905445-2905464 Msa0143830:intron 45.0%
!!! TGTTTTGGTAGAGACAGGGT+TGG + chr1_4:2905479-2905498 None:intergenic 45.0%
!!! GACGGAGAAGGAAAGTGTTT+TGG + chr1_4:2905494-2905513 None:intergenic 45.0%
AAATCGAGTGTCATGCTGTG+TGG + chr1_4:2905581-2905600 None:intergenic 45.0%
CGAGAATTCAAGCTCAACCA+TGG + chr1_4:2905648-2905667 None:intergenic 45.0%
GGTTGAGCTTGAATTCTCGA+AGG - chr1_4:2905649-2905668 Msa0143830:intron 45.0%
!! ACTGGTGATGGAAGCGTTAA+CGG - chr1_4:2905725-2905744 Msa0143830:intron 45.0%
! GAAGCGTTAACGGGAAACAA+GGG - chr1_4:2905735-2905754 Msa0143830:intron 45.0%
GAACATTCCGATGACGTTTC+AGG - chr1_4:2905857-2905876 Msa0143830:intron 45.0%
ATTCGACCCTGAAACGTCAT+CGG + chr1_4:2905867-2905886 None:intergenic 45.0%
TGTACCTTCTCTTGACACAG+TGG + chr1_4:2905895-2905914 None:intergenic 45.0%
ACGTGAATTTGTCGTGTGAG+TGG - chr1_4:2906296-2906315 Msa0143830:intron 45.0%
CGTGAATTTGTCGTGTGAGT+GGG - chr1_4:2906297-2906316 Msa0143830:intron 45.0%
GTGAATTTGTCGTGTGAGTG+GGG - chr1_4:2906298-2906317 Msa0143830:intron 45.0%
! TTTGGAGTCAACGATTTCGG+TGG - chr1_4:2906331-2906350 Msa0143830:intron 45.0%
! ATTTTGCTAACATGCGCTGG+GGG + chr1_4:2906574-2906593 None:intergenic 45.0%
GACTACGAAACCCTAACTCA+TGG + chr1_4:2906742-2906761 None:intergenic 45.0%
! GAGTACTCATGGCGGAAATA+CGG - chr1_4:2907176-2907195 Msa0143830:CDS 45.0%
ATACGGTCAGAAACCGATCA+AGG - chr1_4:2907193-2907212 Msa0143830:CDS 45.0%
TACGGTCAGAAACCGATCAA+GGG - chr1_4:2907194-2907213 Msa0143830:CDS 45.0%
GGATATGGTGATCCCTTGAT+CGG + chr1_4:2907209-2907228 None:intergenic 45.0%
TCAAGGGATCACCATATCCA+CGG - chr1_4:2907210-2907229 Msa0143830:CDS 45.0%
AATCAGCATCGTTGGATCGT+CGG + chr1_4:2907397-2907416 None:intergenic 45.0%
GAGTGAAAGGTTGAGGGATG+TGG + chr1_4:2905070-2905089 None:intergenic 50.0%
GAGGAAAAGAGAGAGAGGGA+GGG + chr1_4:2905110-2905129 None:intergenic 50.0%
AGAGGAAAAGAGAGAGAGGG+AGG + chr1_4:2905111-2905130 None:intergenic 50.0%
GCTGCATCAGAAGGACTCAA+AGG - chr1_4:2905248-2905267 Msa0143830:exon 50.0%
! AACCGGTGGTGATGAAGATG+AGG + chr1_4:2905423-2905442 None:intergenic 50.0%
! GTGGATTGAATCTGAACCGG+TGG + chr1_4:2905437-2905456 None:intergenic 50.0%
TGTTTGAACCGGTGAAGGAG+TGG + chr1_4:2905456-2905475 None:intergenic 50.0%
! GTTGGTGTTTGAACCGGTGA+AGG + chr1_4:2905461-2905480 None:intergenic 50.0%
!! GACAGGGTTGGTGTTTGAAC+CGG + chr1_4:2905467-2905486 None:intergenic 50.0%
AGTGTCATGCTGTGTGGTTG+CGG + chr1_4:2905575-2905594 None:intergenic 50.0%
GAGCTCAAAACGACGTCGTT+TGG + chr1_4:2905611-2905630 None:intergenic 50.0%
!! CTGGTGATGGAAGCGTTAAC+GGG - chr1_4:2905726-2905745 Msa0143830:intron 50.0%
!! GGAAGCGTTAACGGGAAACA+AGG - chr1_4:2905734-2905753 Msa0143830:intron 50.0%
! AGTGCCACTGTGTCAAGAGA+AGG - chr1_4:2905888-2905907 Msa0143830:intron 50.0%
TTTGTCGTGTGAGTGGGGTA+AGG - chr1_4:2906303-2906322 Msa0143830:intron 50.0%
! GAAGAGGACTGTGAGAGTAC+CGG - chr1_4:2907118-2907137 Msa0143830:CDS 50.0%
GCGGTCTTTGAACTTATCGC+CGG + chr1_4:2907140-2907159 None:intergenic 50.0%
AAAGACCGCCGATATACCAC+CGG - chr1_4:2907151-2907170 Msa0143830:CDS 50.0%
GTACTCGTCCGGTGGTATAT+CGG + chr1_4:2907162-2907181 None:intergenic 50.0%
GCTCAACGTGTTTCCTTGCT+GGG + chr1_4:2907368-2907387 None:intergenic 50.0%
CACTATTCAAGCTGCGATGC+AGG - chr1_4:2907443-2907462 Msa0143830:CDS 50.0%
CTTGGAGGAAAGTGGGAGAA+TGG - chr1_4:2907526-2907545 Msa0143830:CDS 50.0%
! AGGGAGGGAGGAAATGGGTT+TGG + chr1_4:2905095-2905114 None:intergenic 55.0%
GAGAGAGGGAGGGAGGAAAT+GGG + chr1_4:2905100-2905119 None:intergenic 55.0%
AGAGAGAGGGAGGGAGGAAA+TGG + chr1_4:2905101-2905120 None:intergenic 55.0%
GAAAAGAGAGAGAGGGAGGG+AGG + chr1_4:2905107-2905126 None:intergenic 55.0%
TGCGGTTGAACAAAGCTCGC+CGG + chr1_4:2905557-2905576 None:intergenic 55.0%
AGATAGCTGATGTCGCCGCT+GGG + chr1_4:2905778-2905797 None:intergenic 55.0%
GAGTGGGGTAAGGCTACGTT+TGG - chr1_4:2906313-2906332 Msa0143830:intron 55.0%
GGAGTCAACGATTTCGGTGG+TGG - chr1_4:2906334-2906353 Msa0143830:intron 55.0%
! CAACGATTTCGGTGGTGGTG+TGG - chr1_4:2906339-2906358 Msa0143830:intron 55.0%
TACCACCGGACGAGTACTCA+TGG - chr1_4:2907165-2907184 Msa0143830:CDS 55.0%
TTCCGCCATGAGTACTCGTC+CGG + chr1_4:2907173-2907192 None:intergenic 55.0%
CGCTCAACGTGTTTCCTTGC+TGG + chr1_4:2907369-2907388 None:intergenic 55.0%
GAGAACGCATCCGGGATTGT+GGG - chr1_4:2907465-2907484 Msa0143830:CDS 55.0%
GGAGGAAAGTGGGAGAATGG+AGG - chr1_4:2907529-2907548 Msa0143830:CDS 55.0%
TTAACCGAACCGGTCACGCC+CGG - chr1_4:2905372-2905391 Msa0143830:CDS 60.0%
!! GACAGTGCAGGTGACGGAGA+AGG + chr1_4:2905506-2905525 None:intergenic 60.0%
TCCGTCACCTGCACTGTCAC+CGG - chr1_4:2905508-2905527 Msa0143830:intron 60.0%
GAGATAGCTGATGTCGCCGC+TGG + chr1_4:2905779-2905798 None:intergenic 60.0%
GCGGCGACATCAGCTATCTC+CGG - chr1_4:2905779-2905798 Msa0143830:intron 60.0%
GCGACATCAGCTATCTCCGG+CGG - chr1_4:2905782-2905801 Msa0143830:intron 60.0%
TGCTAACATGCGCTGGGGGT+GGG + chr1_4:2906570-2906589 None:intergenic 60.0%
TTGCTAACATGCGCTGGGGG+TGG + chr1_4:2906571-2906590 None:intergenic 60.0%
CTCGTCCGGTGGTATATCGG+CGG + chr1_4:2907159-2907178 None:intergenic 60.0%
CACCGGACGAGTACTCATGG+CGG - chr1_4:2907168-2907187 Msa0143830:CDS 60.0%
GCGATGCAGGAGAACGCATC+CGG - chr1_4:2907456-2907475 Msa0143830:CDS 60.0%
CGATGCAGGAGAACGCATCC+GGG - chr1_4:2907457-2907476 Msa0143830:CDS 60.0%
GGAGAACGCATCCGGGATTG+TGG - chr1_4:2907464-2907483 Msa0143830:CDS 60.0%
CGCATCCGGGATTGTGGGTT+TGG - chr1_4:2907470-2907489 Msa0143830:CDS 60.0%
TGAACCGGGCGTGACCGGTT+CGG + chr1_4:2905379-2905398 None:intergenic 65.0%
GCCGGTGACAGTGCAGGTGA+CGG + chr1_4:2905512-2905531 None:intergenic 65.0%
!! ATTGGCGCCGGTGACAGTGC+AGG + chr1_4:2905518-2905537 None:intergenic 65.0%
TGACGCACGGAGATTGGCGC+CGG + chr1_4:2905530-2905549 None:intergenic 65.0%
AATCTCCGTGCGTCACGCGC+CGG - chr1_4:2905535-2905554 Msa0143830:intron 65.0%
!! CGATAGCGGCGGTTTTCCGC+CGG + chr1_4:2905801-2905820 None:intergenic 65.0%
CGGCGGAAAACCGCCGCTAT+CGG - chr1_4:2905799-2905818 Msa0143830:intron 65.0%
CGGAAAACCGCCGCTATCGG+CGG - chr1_4:2905802-2905821 Msa0143830:intron 65.0%
TTGGACGGCACCGCCGATAG+CGG + chr1_4:2905815-2905834 None:intergenic 65.0%
!! CGGCGGTGCCGTCCAAGAAA+AGG - chr1_4:2905819-2905838 Msa0143830:intron 65.0%
CGCCATGAGTACTCGTCCGG+TGG + chr1_4:2907170-2907189 None:intergenic 65.0%
!! CAGTGAGAGGGTGCCCAGCA+AGG - chr1_4:2907352-2907371 Msa0143830:CDS 65.0%
GCGTCTGAACCGGGCGTGAC+CGG + chr1_4:2905384-2905403 None:intergenic 70.0%
AACCGGGGCGCGTCTGAACC+GGG + chr1_4:2905393-2905412 None:intergenic 70.0%
GAACCGGGGCGCGTCTGAAC+CGG + chr1_4:2905394-2905413 None:intergenic 70.0%
GGCGCGTGACGCACGGAGAT+TGG + chr1_4:2905536-2905555 None:intergenic 70.0%
! GACGGCACCGCCGATAGCGG+CGG + chr1_4:2905812-2905831 None:intergenic 75.0%
! CGCCCGGTTCAGACGCGCCC+CGG - chr1_4:2905388-2905407 Msa0143830:CDS 80.0%
! GCTCGCCGGCGCGTGACGCA+CGG + chr1_4:2905543-2905562 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 2905040 2907729 2905040 ID=Msa0143830;Name=Msa0143830
chr1_4 mRNA 2905040 2907729 2905040 ID=Msa0143830-mRNA-1;Parent=Msa0143830;Name=Msa0143830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=151|1|1|1|1|1|3|220|340
chr1_4 exon 2905040 2905437 2905040 ID=Msa0143830-mRNA-1:exon:1310;Parent=Msa0143830-mRNA-1
chr1_4 exon 2905538 2905663 2905538 ID=Msa0143830-mRNA-1:exon:1309;Parent=Msa0143830-mRNA-1
chr1_4 exon 2906860 2907729 2906860 ID=Msa0143830-mRNA-1:exon:1308;Parent=Msa0143830-mRNA-1
chr1_4 five_prime_UTR 2907579 2907729 2907579 ID=Msa0143830-mRNA-1:five_prime_utr;Parent=Msa0143830-mRNA-1
chr1_4 CDS 2906860 2907578 2906860 ID=Msa0143830-mRNA-1:cds;Parent=Msa0143830-mRNA-1
chr1_4 CDS 2905538 2905663 2905538 ID=Msa0143830-mRNA-1:cds;Parent=Msa0143830-mRNA-1
chr1_4 CDS 2905260 2905437 2905260 ID=Msa0143830-mRNA-1:cds;Parent=Msa0143830-mRNA-1
chr1_4 three_prime_UTR 2905040 2905259 2905040 ID=Msa0143830-mRNA-1:three_prime_utr;Parent=Msa0143830-mRNA-1
Gene Sequence

>Msa0143830

ATGGCAGTGGAACTCATGGGGTTCCCAAAAATAGATGAACAAAAAGCCATACAAGAGGCTGCATCAGAAGGACTCAAAGGTATGGAACACTTGATCCTAACCCTTTCTCATCAACCAACTCAATTAAACACTCAACTAACCGACCACACCGTTTCTAAGTTCAAAAAACTCATCTCTTTACTTAACCGAACCGGTCACGCCCGGTTCAGACGCGCCCCGGTTCATTCATCCTCATCTTCATCACCACCGGTTCAGATTCAATCCACTCCTTCACCGGTTCAAACACCAACCCTGTCTCTACCAAAACACTTTCCTTCTCCGTCACCTGCACTGTCACCGGCGCCAATCTCCGTGCGTCACGCGCCGGCGAGCTTTGTTCAACCGCAACCACACAGCATGACACTCGATTTCACGAAGCCAAACGACGTCGTTTTGAGCTCAAACACGAAAAACTCCATGGTTGAGCTTGAATTCTCGAAGGATACAGCAACGTTTAGCGTTTCTTCAGCTTCATCGTTTATGTCATCTGCTATTACTGGTGATGGAAGCGTTAACGGGAAACAAGGGTCTTCGATTTTTCTCAACCCAGCGGCGACATCAGCTATCTCCGGCGGAAAACCGCCGCTATCGGCGGTGCCGTCCAAGAAAAGGTGTCATGATCATGGTGAACATTCCGATGACGTTTCAGGGTCGAATAAGTGCCACTGTGTCAAGAGAAGAAAAAATAGGGTGAAGAGGACTGTGAGAGTACCGGCGATAAGTTCAAAGACCGCCGATATACCACCGGACGAGTACTCATGGCGGAAATACGGTCAGAAACCGATCAAGGGATCACCATATCCACGAGGCTATTACAAGTGTAGTACAGTGAGAGGGTGCCCAGCAAGGAAACACGTTGAGCGTGCAACCGACGATCCAACGATGCTGATTGTAACGTATGAAGGGGAGCACAGACACACTATTCAAGCTGCGATGCAGGAGAACGCATCCGGGATTGTGGGTTTGGTATTTGAGTCAACGTAA
Protein sequence

>Msa0143830

MAVELMGFPKIDEQKAIQEAASEGLKGMEHLILTLSHQPTQLNTQLTDHTVSKFKKLISLLNRTGHARFRRAPVHSSSSSSPPVQIQSTPSPVQTPTLSLPKHFPSPSPALSPAPISVRHAPASFVQPQPHSMTLDFTKPNDVVLSSNTKNSMVELEFSKDTATFSVSSASSFMSSAITGDGSVNGKQGSSIFLNPAATSAISGGKPPLSAVPSKKRCHDHGEHSDDVSGSNKCHCVKRRKNRVKRTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERATDDPTMLIVTYEGEHRHTIQAAMQENASGIVGLVFEST*