AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1452610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1452610 MtrunA17_Chr1g0147881 93.269 208 3 1 1 197 133 340 3.92e-142 399
Msa1452610 MtrunA17_Chr4g0071521 53.061 196 59 6 2 176 119 302 3.17e-52 170
Msa1452610 MtrunA17_Chr3g0139021 57.927 164 50 6 35 185 222 379 4.00e-52 172
Msa1452610 MtrunA17_Chr4g0053281 49.215 191 67 7 27 197 158 338 2.14e-45 153
Msa1452610 MtrunA17_Chr5g0401821 50.365 137 50 3 73 197 141 271 5.18e-39 134
Msa1452610 MtrunA17_Chr1g0184691 46.927 179 74 4 10 176 181 350 1.08e-34 125
Msa1452610 MtrunA17_Chr7g0228941 45.045 111 48 2 77 176 1 109 2.20e-24 92.8
Msa1452610 MtrunA17_Chr2g0293481 42.045 88 35 2 105 176 237 324 2.72e-17 79.3
Msa1452610 MtrunA17_Chr7g0248691 47.561 82 27 3 106 176 135 211 2.12e-16 75.9
Msa1452610 MtrunA17_Chr2g0284321 40.476 84 38 2 107 178 11 94 1.61e-15 72.0
Msa1452610 MtrunA17_Chr8g0379461 39.326 89 36 2 106 176 45 133 7.08e-15 70.5
Msa1452610 MtrunA17_Chr2g0319961 39.394 99 43 3 106 187 50 148 7.88e-15 70.9
Msa1452610 MtrunA17_Chr5g0445311 44.048 84 32 3 112 181 343 425 3.74e-14 70.1
Msa1452610 MtrunA17_Chr3g0106491 35.172 145 71 5 57 180 283 425 8.87e-14 68.9
Msa1452610 MtrunA17_Chr8g0348311 43.902 82 30 2 106 176 136 212 1.54e-13 67.8
Msa1452610 MtrunA17_Chr3g0101131 40.000 105 42 5 106 191 383 485 1.76e-13 68.2
Msa1452610 MtrunA17_Chr4g0042831 41.414 99 35 4 105 181 242 339 3.69e-13 67.0
Msa1452610 MtrunA17_Chr5g0418191 46.341 82 29 3 114 181 301 381 5.41e-13 66.6
Msa1452610 MtrunA17_Chr7g0270051 36.170 94 44 2 105 182 23 116 7.27e-13 65.5
Msa1452610 MtrunA17_Chr5g0432161 46.341 82 29 3 114 181 402 482 9.79e-13 65.9
Msa1452610 MtrunA17_Chr7g0218081 43.373 83 32 3 113 181 390 471 3.32e-12 64.3
Msa1452610 MtrunA17_Chr4g0025061 43.284 67 27 1 131 186 361 427 5.59e-12 63.9
Msa1452610 MtrunA17_Chr7g0243891 37.069 116 45 5 80 181 334 435 5.73e-12 63.9
Msa1452610 MtrunA17_Chr3g0079691 42.683 82 35 2 111 181 476 556 6.60e-12 63.5
Msa1452610 MtrunA17_Chr4g0004911 43.038 79 30 3 114 178 317 394 6.90e-12 63.5
Msa1452610 MtrunA17_Chr5g0402931 53.571 56 16 2 130 176 123 177 9.54e-12 60.8
Msa1452610 MtrunA17_Chr4g0001361 42.857 77 32 2 123 188 155 230 1.78e-11 62.0
Msa1452610 MtrunA17_Chr7g0270831 34.014 147 60 8 53 181 151 278 1.95e-11 62.0
Msa1452610 MtrunA17_Chr7g0270191 31.507 146 77 6 46 176 64 201 2.40e-11 61.2
Msa1452610 MtrunA17_Chr7g0249311 40.000 95 43 3 111 192 373 466 2.71e-11 62.0
Msa1452610 MtrunA17_Chr7g0249301 39.759 83 35 3 113 181 272 353 3.57e-11 61.2
Msa1452610 MtrunA17_Chr4g0051881 34.118 85 44 2 117 190 165 248 4.35e-11 60.8
Msa1452610 MtrunA17_Chr1g0150281 42.105 57 22 1 131 176 141 197 5.89e-11 60.1
Msa1452610 MtrunA17_Chr2g0333851 36.905 84 38 2 104 176 147 226 6.33e-11 60.5
Msa1452610 MtrunA17_Chr3g0136961 40.278 72 32 1 116 176 124 195 6.82e-11 60.1
Msa1452610 MtrunA17_Chr2g0288871 36.842 76 37 1 114 178 289 364 8.50e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1452610 AT4G31550.1 62.673 217 48 10 1 196 120 324 6.47e-76 231
Msa1452610 AT4G31550.2 62.673 217 47 11 1 196 120 323 5.41e-75 229
Msa1452610 AT2G24570.1 60.748 214 58 11 1 196 115 320 4.13e-70 216
Msa1452610 AT4G24240.1 53.503 157 48 5 35 178 196 340 7.65e-45 152
Msa1452610 AT2G30590.1 47.953 171 69 5 19 176 207 370 7.76e-43 147
Msa1452610 AT4G31550.3 57.233 159 44 9 1 151 120 262 1.78e-42 144
Msa1452610 AT3G04670.1 67.416 89 18 1 100 177 232 320 2.06e-37 132
Msa1452610 AT2G23320.1 60.638 94 26 1 96 178 206 299 3.23e-37 131
Msa1452610 AT5G28650.1 67.045 88 18 1 101 177 233 320 4.25e-37 131
Msa1452610 AT4G24240.2 46.218 119 46 5 35 151 196 298 1.01e-20 87.8
Msa1452610 AT2G34830.2 40.206 97 42 3 96 176 185 281 6.01e-17 78.6
Msa1452610 AT2G34830.1 40.206 97 42 3 96 176 176 272 6.78e-17 78.2
Msa1452610 AT1G30650.1 40.816 98 40 4 105 186 187 282 2.34e-16 76.6
Msa1452610 AT1G29280.1 44.565 92 33 4 103 176 40 131 3.37e-16 74.7
Msa1452610 AT3G04670.2 54.237 59 23 1 100 158 232 286 4.23e-15 72.4
Msa1452610 AT2G38470.1 47.561 82 28 3 114 181 343 423 1.73e-14 71.6
Msa1452610 AT3G58710.2 41.111 90 36 3 106 178 40 129 1.16e-13 68.2
Msa1452610 AT4G01250.1 43.956 91 34 3 97 176 101 185 1.85e-13 67.8
Msa1452610 AT3G58710.1 41.111 90 36 3 106 178 41 130 3.05e-13 67.0
Msa1452610 AT2G23320.2 50.909 55 23 1 97 151 207 257 5.05e-13 66.2
Msa1452610 AT4G26640.2 44.304 79 29 3 114 178 362 439 1.06e-12 66.2
Msa1452610 AT4G26640.5 44.304 79 29 3 114 178 186 263 1.11e-12 65.9
Msa1452610 AT4G26640.6 44.304 79 29 3 114 178 186 263 1.11e-12 65.9
Msa1452610 AT4G26640.4 44.304 79 29 3 114 178 186 263 1.11e-12 65.9
Msa1452610 AT4G26640.3 44.304 79 29 3 114 178 186 263 1.11e-12 65.9
Msa1452610 AT4G26640.1 44.304 79 29 3 114 178 290 367 1.14e-12 66.2
Msa1452610 AT4G26640.7 44.304 79 29 3 114 178 322 399 1.27e-12 66.2
Msa1452610 AT5G52830.1 40.244 82 34 2 106 176 145 222 1.63e-12 65.5
Msa1452610 AT5G56270.1 43.902 82 34 2 111 181 468 548 8.48e-12 63.9
Msa1452610 AT5G07100.2 44.578 83 33 3 107 178 119 199 8.67e-12 62.0
Msa1452610 AT5G07100.4 44.578 83 33 3 107 178 119 199 8.67e-12 62.0
Msa1452610 AT5G07100.5 44.578 83 33 3 107 178 119 199 8.67e-12 62.0
Msa1452610 AT5G07100.3 44.578 83 33 3 107 178 119 199 8.67e-12 62.0
Msa1452610 AT5G07100.1 44.578 83 33 3 107 178 212 292 9.88e-12 63.2
Msa1452610 AT4G31800.2 38.356 73 34 1 115 176 96 168 1.06e-11 62.4
Msa1452610 AT4G31800.1 38.356 73 34 1 115 176 161 233 1.24e-11 62.8
Msa1452610 AT4G39410.1 36.458 96 46 3 105 186 195 289 1.69e-11 62.4
Msa1452610 AT2G37260.3 40.476 84 38 2 106 178 245 327 1.75e-11 62.4
Msa1452610 AT2G37260.2 40.476 84 38 2 106 178 243 325 1.76e-11 62.4
Msa1452610 AT5G26170.1 41.667 72 30 2 117 177 100 170 1.98e-11 60.5
Msa1452610 AT2G03340.1 40.404 99 35 4 106 181 379 476 2.20e-11 62.4
Msa1452610 AT2G37260.1 40.196 102 42 4 88 178 314 407 2.26e-11 62.4
Msa1452610 AT1G13960.1 38.144 97 35 3 106 178 372 467 2.52e-11 62.4
Msa1452610 AT2G40740.1 35.870 92 45 3 97 174 139 230 2.79e-11 61.6
Msa1452610 AT2G40740.3 35.870 92 45 3 97 174 148 239 3.63e-11 61.2
Msa1452610 AT1G13960.2 44.304 79 29 3 114 178 237 314 4.00e-11 61.6
Msa1452610 AT4G04450.2 37.647 85 42 1 114 187 182 266 4.82e-11 61.2
Msa1452610 AT4G04450.1 37.647 85 42 1 114 187 276 360 7.00e-11 60.8

Find 121 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTCCACGTGTTTCCTTGC+TGG 0.172147 tig0034034:-5792 Msa1452610:intergenic
GAACACTCCGATGACGTTTC+AGG 0.267127 tig0034034:+4009 Msa1452610:CDS
GTATTTGAGTCAACGTAATA+AGG 0.271448 tig0034034:+5918 Msa1452610:exon
TTAATATAGAGATGGAAAAT+TGG 0.281523 tig0034034:+6086 Msa1452610:three_prime_UTR
TTTATGTCATCTGCTATTAC+TGG 0.300028 tig0034034:+3859 Msa1452610:CDS
CGCATCCGGGATTGTGGGTT+TGG 0.306368 tig0034034:+5896 Msa1452610:CDS
GAGATAGTTGGTGTCGCCGC+TGG 0.334561 tig0034034:-3928 Msa1452610:intergenic
TACAAGTGTAGCACTGTAAG+AGG 0.337436 tig0034034:+5765 Msa1452610:CDS
GAGAGGGAGGAAAGTGTGTT+TGG 0.341752 tig0034034:-3242 Msa1452610:intergenic
GAGCTCAAAACGACGTCGTT+TGG 0.354917 tig0034034:-3760 Msa1452610:intergenic
TTCTGATGCAGCCTCTTGTA+TGG 0.355564 tig0034034:-3379 Msa1452610:intergenic
GAACCGGGGCGCGTCTGAAC+CGG 0.362386 tig0034034:-3533 Msa1452610:intergenic
GACGGAGAAGGAAAGTGTTT+TGG 0.384362 tig0034034:-3642 Msa1452610:intergenic
GCTCCACGTGTTTCCTTGCT+GGG 0.389925 tig0034034:-5791 Msa1452610:intergenic
TTGGTTGATGAGAAAGGGTT+AGG 0.397259 tig0034034:-3428 Msa1452610:intergenic
TGAGGGATGTGGATATATAA+AGG 0.397400 tig0034034:-3206 Msa1452610:intergenic
GGGTGAAAGGTTGAGGGATG+TGG 0.402644 tig0034034:-3217 Msa1452610:intergenic
ACTGGTGATGGAAGCGTTAA+CGG 0.421732 tig0034034:+3877 Msa1452610:CDS
GCGATGCAGGAGAACGCATC+CGG 0.423327 tig0034034:+5882 Msa1452610:CDS
GCGTCTGAACCGGGCGTGAC+CGG 0.426753 tig0034034:-3523 Msa1452610:intergenic
GGCGCGTGACGCACAGAGAT+TGG 0.429652 tig0034034:-3684 Msa1452610:intergenic
TTCATCACCACCGGTTCAAC+CGG 0.430740 tig0034034:+3569 Msa1452610:five_prime_UTR
ATTGAGTTGGTTGATGAGAA+AGG 0.438129 tig0034034:-3434 Msa1452610:intergenic
AATAATGGTTAGCAAGACTT+TGG 0.438323 tig0034034:-6143 Msa1452610:intergenic
TACTATTCAAGCTGCGATGC+AGG 0.438847 tig0034034:+5869 Msa1452610:CDS
GACAGGGTTGGTGTTTGAAC+CGG 0.443888 tig0034034:-3615 Msa1452610:intergenic
TTTGGAAGGGTGAAAGGTTG+AGG 0.444269 tig0034034:-3224 Msa1452610:intergenic
TATTTGAGTCAACGTAATAA+GGG 0.444413 tig0034034:+5919 Msa1452610:exon
CGGCGGAAAACCGCCGCTAT+CGG 0.446685 tig0034034:+3951 Msa1452610:CDS
ATTGGAGGAAAGTGGGAGAA+TGG 0.450955 tig0034034:+5953 Msa1452610:three_prime_UTR
AAGAAAAGGTGTCATGATCA+TGG 0.451475 tig0034034:+3985 Msa1452610:CDS
ATCTCTTTACTTAACCGAAC+CGG 0.452961 tig0034034:+3504 Msa1452610:five_prime_UTR
TGAATCTGAACCGGTTGAAC+CGG 0.453562 tig0034034:-3579 Msa1452610:intergenic
GGCATGAGAAGAGGGAGAGA+GGG 0.453815 tig0034034:-3258 Msa1452610:intergenic
AGTTGAGTGTTTAATTGAGT+TGG 0.455065 tig0034034:-3447 Msa1452610:intergenic
GAAGATGAGGAGGAATGAAC+CGG 0.456286 tig0034034:-3549 Msa1452610:intergenic
GGGAGGAAAGTGTGTTTGGA+AGG 0.458237 tig0034034:-3238 Msa1452610:intergenic
TGGCATGAGAAGAGGGAGAG+AGG 0.458607 tig0034034:-3259 Msa1452610:intergenic
CTGGTGATGGAAGCGTTAAC+GGG 0.460991 tig0034034:+3878 Msa1452610:CDS
AGTACTCGTGGCGGAAAATA+CGG 0.462524 tig0034034:+5602 Msa1452610:CDS
TTCTTTCATCAAAATGGCAG+TGG 0.466111 tig0034034:+3320 Msa1452610:five_prime_UTR
TTGAGTTGGTTGATGAGAAA+GGG 0.466292 tig0034034:-3433 Msa1452610:intergenic
CAAAATGGCAGTGGAACTCA+TGG 0.473399 tig0034034:+3329 Msa1452610:five_prime_UTR
TACGTTACAATCAGCATCGT+TGG 0.473963 tig0034034:-5828 Msa1452610:intergenic
CGCCCGGTTCAGACGCGCCC+CGG 0.476428 tig0034034:+3530 Msa1452610:five_prime_UTR
GATTCAATCCACTCCTTCGC+CGG 0.477754 tig0034034:+3596 Msa1452610:five_prime_UTR
AACACTCCGATGACGTTTCA+GGG 0.483071 tig0034034:+4010 Msa1452610:CDS
ACACTTTCCTTCTCCGTCAC+CGG 0.483385 tig0034034:+3647 Msa1452610:five_prime_UTR
TTGGAAGGGTGAAAGGTTGA+GGG 0.485074 tig0034034:-3223 Msa1452610:intergenic
CTCCTCATCTTCATCACCAC+CGG 0.490654 tig0034034:+3560 Msa1452610:five_prime_UTR
ATGAGAAGAGGGAGAGAGGG+AGG 0.491770 tig0034034:-3255 Msa1452610:intergenic
GGAGAACGCATCCGGGATTG+TGG 0.492453 tig0034034:+5890 Msa1452610:CDS
AACCGGGGCGCGTCTGAACC+GGG 0.500032 tig0034034:-3532 Msa1452610:intergenic
TCATCTGCTATTACTGGTGA+TGG 0.500505 tig0034034:+3865 Msa1452610:CDS
GTACTCGTCCGGTGGTATAT+CGG 0.501607 tig0034034:-5584 Msa1452610:intergenic
TGAACCGGGCGTGACCGGTT+CGG 0.504434 tig0034034:-3518 Msa1452610:intergenic
TCCGTCACCGGCACTGTCAC+CGG 0.506191 tig0034034:+3659 Msa1452610:five_prime_UTR
AGATAGTTGGTGTCGCCGCT+GGG 0.508055 tig0034034:-3927 Msa1452610:intergenic
AGAAAAGGTGTCATGATCAT+GGG 0.508968 tig0034034:+3986 Msa1452610:CDS
CGGCGGTGCCGTCTAAGAAA+AGG 0.512268 tig0034034:+3971 Msa1452610:CDS
AAATTGTTGAACAGTTAGAA+TGG 0.518133 tig0034034:-3279 Msa1452610:intergenic
AATATGAGTGGAAGTTAAGG+TGG 0.519240 tig0034034:+6023 Msa1452610:three_prime_UTR
GTGTCATGCTGTGTGGTTTG+CGG 0.519249 tig0034034:-3723 Msa1452610:intergenic
ATGCTGATTGTAACGTATGA+AGG 0.520363 tig0034034:+5834 Msa1452610:CDS
CGGAAAACCGCCGCTATCGG+CGG 0.520458 tig0034034:+3954 Msa1452610:CDS
GTTAGAATGGCATGAGAAGA+GGG 0.526952 tig0034034:-3266 Msa1452610:intergenic
AATCTCTGTGCGTCACGCGC+CGG 0.526961 tig0034034:+3686 Msa1452610:five_prime_UTR
TTCCGCCACGAGTACTCGTC+CGG 0.531212 tig0034034:-5595 Msa1452610:intergenic
GGAGTGGATTGAATCTGAAC+CGG 0.533343 tig0034034:-3588 Msa1452610:intergenic
GGAAGCGTTAACGGGAAACA+AGG 0.537738 tig0034034:+3886 Msa1452610:CDS
GAGAACGCATCCGGGATTGT+GGG 0.542352 tig0034034:+5891 Msa1452610:CDS
ATACAAGAGGCTGCATCAGA+AGG 0.544462 tig0034034:+3381 Msa1452610:five_prime_UTR
GCCGGTGACAGTGCCGGTGA+CGG 0.547798 tig0034034:-3660 Msa1452610:intergenic
AGTGTGTTTGGAAGGGTGAA+AGG 0.549827 tig0034034:-3230 Msa1452610:intergenic
TTAACCGAACCGGTCACGCC+CGG 0.551066 tig0034034:+3514 Msa1452610:five_prime_UTR
ATTGGCGCCGGTGACAGTGC+CGG 0.551205 tig0034034:-3666 Msa1452610:intergenic
GTTGGTGTTTGAACCGGCGA+AGG 0.551537 tig0034034:-3609 Msa1452610:intergenic
GCGGCGACACCAACTATCTC+CGG 0.553417 tig0034034:+3931 Msa1452610:CDS
GACAGTGCCGGTGACGGAGA+AGG 0.553869 tig0034034:-3654 Msa1452610:intergenic
TGCGGTTGAACAAAGCTCGC+CGG 0.556218 tig0034034:-3705 Msa1452610:intergenic
ATATGAGTGGAAGTTAAGGT+GGG 0.557236 tig0034034:+6024 Msa1452610:three_prime_UTR
CGATGCAGGAGAACGCATCC+GGG 0.559528 tig0034034:+5883 Msa1452610:CDS
AAATACCAAACCCACAATCC+CGG 0.560277 tig0034034:-5901 Msa1452610:intergenic
AGTTAGAATGGCATGAGAAG+AGG 0.560869 tig0034034:-3267 Msa1452610:intergenic
GGAGGAAAGTGTGTTTGGAA+GGG 0.562555 tig0034034:-3237 Msa1452610:intergenic
GAAGAGGACTGTGAGAGTAC+CGG 0.569882 tig0034034:+5543 Msa1452610:CDS
GACGGCACCGCCGATAGCGG+CGG 0.571524 tig0034034:-3961 Msa1452610:intergenic
TTAGACGGCACCGCCGATAG+CGG 0.572147 tig0034034:-3964 Msa1452610:intergenic
AAGATGAGGAGGAATGAACC+GGG 0.573874 tig0034034:-3548 Msa1452610:intergenic
GGAGGAAAGTGGGAGAATGG+AGG 0.575698 tig0034034:+5956 Msa1452610:three_prime_UTR
GCCGTCTTTGAACTTATCGC+CGG 0.583939 tig0034034:-5562 Msa1452610:intergenic
GAACTTAGAAACGGTGTGGT+CGG 0.585451 tig0034034:-3472 Msa1452610:intergenic
TGTTTGAACCGGCGAAGGAG+TGG 0.588183 tig0034034:-3604 Msa1452610:intergenic
ATCAGAAGGACTCAAAGGTA+TGG 0.599816 tig0034034:+3395 Msa1452610:five_prime_UTR
CTGTAAGAGGGTGCCCAGCA+AGG 0.607648 tig0034034:+5778 Msa1452610:CDS
AAAATGGCAGTGGAACTCAT+GGG 0.610326 tig0034034:+3330 Msa1452610:five_prime_UTR
CGGTGGTGATGAAGATGAGG+AGG 0.613126 tig0034034:-3559 Msa1452610:intergenic
GCTGCATCAGAAGGACTCAA+AGG 0.616681 tig0034034:+3390 Msa1452610:five_prime_UTR
CGAGAATTCAAGCTCAACCA+TGG 0.618884 tig0034034:-3797 Msa1452610:intergenic
ATTTGAGTCAACGTAATAAG+GGG 0.619420 tig0034034:+5920 Msa1452610:exon
ATTCGACCCTGAAACGTCAT+CGG 0.623065 tig0034034:-4016 Msa1452610:intergenic
TGACGCACAGAGATTGGCGC+CGG 0.628257 tig0034034:-3678 Msa1452610:intergenic
GAAAAGGTGTCATGATCATG+GGG 0.632050 tig0034034:+3987 Msa1452610:CDS
TATGAGTGGAAGTTAAGGTG+GGG 0.635698 tig0034034:+6025 Msa1452610:three_prime_UTR
ACAAGTGTAGCACTGTAAGA+GGG 0.637119 tig0034034:+5766 Msa1452610:CDS
CGCCACGAGTACTCGTCCGG+TGG 0.638685 tig0034034:-5592 Msa1452610:intergenic
ATCTGAACCGGTTGAACCGG+TGG 0.642716 tig0034034:-3576 Msa1452610:intergenic
AGTGCCACTGTGTCAAGAGA+AGG 0.645447 tig0034034:+4040 Msa1452610:CDS
GGTTGAGCTTGAATTCTCGA+AGG 0.647277 tig0034034:+3801 Msa1452610:CDS
ACCGGCGATAAGTTCAAAGA+CGG 0.648876 tig0034034:+5561 Msa1452610:CDS
AAATGGCAGTGGAACTCATG+GGG 0.650555 tig0034034:+3331 Msa1452610:five_prime_UTR
AACCGGTGGTGATGAAGATG+AGG 0.659341 tig0034034:-3562 Msa1452610:intergenic
GTGCCCAGCAAGGAAACACG+TGG 0.663662 tig0034034:+5788 Msa1452610:CDS
AAAGACGGCCGATATACCAC+CGG 0.676381 tig0034034:+5576 Msa1452610:CDS
TACCACCGGACGAGTACTCG+TGG 0.691070 tig0034034:+5590 Msa1452610:CDS
GCGACACCAACTATCTCCGG+CGG 0.701511 tig0034034:+3934 Msa1452610:CDS
AAATCGAGTGTCATGCTGTG+TGG 0.701991 tig0034034:-3730 Msa1452610:intergenic
GAAGCGTTAACGGGAAACAA+GGG 0.708559 tig0034034:+3887 Msa1452610:CDS
TGTACCTTCTCTTGACACAG+TGG 0.717082 tig0034034:-4044 Msa1452610:intergenic
CACCGGACGAGTACTCGTGG+CGG 0.727156 tig0034034:+5593 Msa1452610:CDS
AGATGAGGAGGAATGAACCG+GGG 0.738996 tig0034034:-3547 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATAATTAAAGATATTAA+CGG - tig0034034:4287-4306 Msa1452610:intergenic 10.0%
!!! ATATATTTTTGATTTTTGAT+TGG + tig0034034:4594-4613 Msa1452610:intron 10.0%
!! ATTAATTAGAAATAAAGAAA+GGG + tig0034034:4641-4660 Msa1452610:intron 10.0%
!!! AAAATATTTTAATATAGAGA+TGG + tig0034034:6078-6097 Msa1452610:three_prime_UTR 10.0%
!! TATACATTAGTAAAAAAGTA+TGG + tig0034034:4391-4410 Msa1452610:intron 15.0%
!! CATTAATTAGAAATAAAGAA+AGG + tig0034034:4640-4659 Msa1452610:intron 15.0%
!!! ATATAGGATTTTAATTTTTG+TGG + tig0034034:5033-5052 Msa1452610:intron 15.0%
!!! TATAGGATTTTAATTTTTGT+GGG + tig0034034:5034-5053 Msa1452610:intron 15.0%
!!! TTATTTTACAATTCAATGTA+CGG + tig0034034:5231-5250 Msa1452610:intron 15.0%
!!! TTTTTTTTACCAGAAAAAAT+AGG + tig0034034:5518-5537 Msa1452610:intron 15.0%
!!! TTTTTTTACCAGAAAAAATA+GGG + tig0034034:5519-5538 Msa1452610:intron 15.0%
!! ATAAAAGTCAACATAATTAA+CGG - tig0034034:5693-5712 Msa1452610:intergenic 15.0%
!!! TTCATTTTCTTTCATCAAAA+TGG + tig0034034:3314-3333 Msa1452610:five_prime_UTR 20.0%
!!! CTTTTTGTTCATCTATTTTT+GGG - tig0034034:3359-3378 Msa1452610:intergenic 20.0%
!! TTTGTCATTATGTTAATCTA+CGG - tig0034034:4198-4217 Msa1452610:intergenic 20.0%
!! TGAACTCATAATCAAAAAAT+GGG - tig0034034:4996-5015 Msa1452610:intergenic 20.0%
!! TTGAACTCATAATCAAAAAA+TGG - tig0034034:4997-5016 Msa1452610:intergenic 20.0%
!! TATGAGTTCAAATTAAATTG+AGG + tig0034034:5006-5025 Msa1452610:intron 20.0%
!! ATGAGTTCAAATTAAATTGA+GGG + tig0034034:5007-5026 Msa1452610:intron 20.0%
!! ATTAAATTGAGGGATAATAT+AGG + tig0034034:5017-5036 Msa1452610:intron 20.0%
!!! GAAATACTTTTTTTTTTGAG+AGG + tig0034034:5381-5400 Msa1452610:intron 20.0%
!!! TTTTTTTTTGAGAGGAAATA+TGG + tig0034034:5389-5408 Msa1452610:intron 20.0%
!!! TTTTTTTTGAGAGGAAATAT+GGG + tig0034034:5390-5409 Msa1452610:intron 20.0%
!!! TTATTCTTTCTTTTAATCAG+AGG + tig0034034:5738-5757 Msa1452610:intron 20.0%
!! ATAAGGGGAATTAAAAAAAT+TGG + tig0034034:5935-5954 Msa1452610:exon 20.0%
!!! TTTTGTTAGAAAAATATGAG+TGG + tig0034034:6011-6030 Msa1452610:three_prime_UTR 20.0%
!! TTAATATAGAGATGGAAAAT+TGG + tig0034034:6086-6105 Msa1452610:three_prime_UTR 20.0%
! AAATTGTTGAACAGTTAGAA+TGG - tig0034034:3282-3301 Msa1378350:intergenic 25.0%
!! GCTTTTTGTTCATCTATTTT+TGG - tig0034034:3360-3379 Msa1452610:intergenic 25.0%
!!! GAGTTTTTTGAACTTAGAAA+CGG - tig0034034:3484-3503 Msa1452610:intergenic 25.0%
! ATTCAAAGGTAAACTCTAAA+AGG - tig0034034:4107-4126 Msa1452610:intergenic 25.0%
!!! TTTTAGAGTTTACCTTTGAA+TGG + tig0034034:4106-4125 Msa1452610:intron 25.0%
!!! TTTGGACATGTATTTTGAAA+CGG - tig0034034:4229-4248 Msa1452610:intergenic 25.0%
!! CATATGTGAAGTTATTGATT+TGG - tig0034034:4247-4266 Msa1452610:intergenic 25.0%
!!! ATTGGACATGTATTTTGAAA+CGG + tig0034034:4450-4469 Msa1452610:intron 25.0%
! TAGAAATAAAGAAAGGGAAA+AGG + tig0034034:4647-4666 Msa1452610:intron 25.0%
! TGTGGTTAAAATGCTTTAAT+AGG + tig0034034:4752-4771 Msa1452610:intron 25.0%
!!! ACCATATCATTTGATAGTTT+TGG + tig0034034:5074-5093 Msa1452610:intron 25.0%
! TCCAAAACTATCAAATGATA+TGG - tig0034034:5078-5097 Msa1452610:intergenic 25.0%
!!! TCGAATTACTTTTTAGTCAA+AGG - tig0034034:5115-5134 Msa1452610:intergenic 25.0%
! ACAATTTACTCTTATCCAAT+TGG + tig0034034:5351-5370 Msa1452610:intron 25.0%
! TATTTGAGTCAACGTAATAA+GGG + tig0034034:5919-5938 Msa1452610:exon 25.0%
! TTAAAAAAATTGGAGGAAAG+TGG + tig0034034:5945-5964 Msa1452610:three_prime_UTR 25.0%
! TAAAAAAATTGGAGGAAAGT+GGG + tig0034034:5946-5965 Msa1452610:three_prime_UTR 25.0%
! AAAAATATGAGTGGAAGTTA+AGG + tig0034034:6020-6039 Msa1452610:three_prime_UTR 25.0%
AGTTGAGTGTTTAATTGAGT+TGG - tig0034034:3450-3469 Msa1452610:intergenic 30.0%
TTTATGTCATCTGCTATTAC+TGG + tig0034034:3859-3878 Msa1452610:CDS 30.0%
ATAGTGCACATTGCAAAAAT+TGG + tig0034034:4432-4451 Msa1452610:intron 30.0%
AAACGTTAATGCATGTAATC+GGG - tig0034034:4528-4547 Msa1452610:intergenic 30.0%
CAAACGTTAATGCATGTAAT+CGG - tig0034034:4529-4548 Msa1452610:intergenic 30.0%
!! CGTTTGACTGATATTTTTAC+CGG + tig0034034:4543-4562 Msa1452610:intron 30.0%
AAAGAAAGGGAAAAGGTTAA+TGG + tig0034034:4654-4673 Msa1452610:intron 30.0%
TAAGTGAAGGGAATTGAAAA+AGG - tig0034034:4900-4919 Msa1452610:intergenic 30.0%
AGTCAAAGCAATTAAGTGAA+GGG - tig0034034:4912-4931 Msa1452610:intergenic 30.0%
GAAATAAGATCCATGAGTTA+GGG + tig0034034:5133-5152 Msa1452610:intron 30.0%
AAGTTAAGTTAGACCTAGAT+TGG + tig0034034:5261-5280 Msa1452610:intron 30.0%
! ATTTAAAATCAGGCCAATCT+AGG - tig0034034:5277-5296 Msa1452610:intergenic 30.0%
CCAAGTTAACTAAAACATTC+CGG - tig0034034:5330-5349 Msa1452610:intergenic 30.0%
ACTCTTATCCAATTGGAATA+TGG + tig0034034:5358-5377 Msa1452610:intron 30.0%
CTCTTATCCAATTGGAATAT+GGG + tig0034034:5359-5378 Msa1452610:intron 30.0%
AGTATTTCCCATATTCCAAT+TGG - tig0034034:5369-5388 Msa1452610:intergenic 30.0%
!! AGAAACTTGTTACTTCTGTT+GGG - tig0034034:5486-5505 Msa1452610:intergenic 30.0%
!! AAGAAACTTGTTACTTCTGT+TGG - tig0034034:5487-5506 Msa1452610:intergenic 30.0%
AAAGTCAACATAATTAACGG+TGG - tig0034034:5690-5709 Msa1452610:intergenic 30.0%
GTATTTGAGTCAACGTAATA+AGG + tig0034034:5918-5937 Msa1452610:exon 30.0%
ATTTGAGTCAACGTAATAAG+GGG + tig0034034:5920-5939 Msa1452610:exon 30.0%
AGGGGAATTAAAAAAATTGG+AGG + tig0034034:5938-5957 Msa1452610:three_prime_UTR 30.0%
TGAGGGATGTGGATATATAA+AGG - tig0034034:3209-3228 Msa1378350:intergenic 35.0%
TTCTTTCATCAAAATGGCAG+TGG + tig0034034:3320-3339 Msa1452610:five_prime_UTR 35.0%
TGAACAAAAAGCCATACAAG+AGG + tig0034034:3368-3387 Msa1452610:five_prime_UTR 35.0%
!! TTGAGTTGGTTGATGAGAAA+GGG - tig0034034:3436-3455 Msa1452610:intergenic 35.0%
!! ATTGAGTTGGTTGATGAGAA+AGG - tig0034034:3437-3456 Msa1452610:intergenic 35.0%
! TTTTGAACTTAGAAACGGTG+TGG - tig0034034:3479-3498 Msa1452610:intergenic 35.0%
ATCTCTTTACTTAACCGAAC+CGG + tig0034034:3504-3523 Msa1452610:five_prime_UTR 35.0%
!!! AAAGTGTTTTGGTAGAGACA+GGG - tig0034034:3634-3653 Msa1452610:intergenic 35.0%
! TCATGACACCTTTTCTTAGA+CGG - tig0034034:3982-4001 Msa1452610:intergenic 35.0%
!! AAGAAAAGGTGTCATGATCA+TGG + tig0034034:3985-4004 Msa1452610:CDS 35.0%
!! AGAAAAGGTGTCATGATCAT+GGG + tig0034034:3986-4005 Msa1452610:CDS 35.0%
ATTGAGTGAAACGCAGATAA+AGG - tig0034034:4078-4097 Msa1452610:intergenic 35.0%
AGAGTTTACCTTTGAATGGA+AGG + tig0034034:4110-4129 Msa1452610:intron 35.0%
! TGTTTCTGATGTCCAATATG+TGG + tig0034034:4133-4152 Msa1452610:intron 35.0%
!!! GACATGTATTTTGAAACGGA+GGG - tig0034034:4454-4473 Msa1452610:intergenic 35.0%
TAACGGTCAAAATTGTGCAT+TGG - tig0034034:4270-4289 Msa1452610:intergenic 35.0%
!!! GACATGTATTTTGAAACGGA+GGG + tig0034034:4454-4473 Msa1452610:intron 35.0%
!! GACTGATATTTTTACCGGTT+AGG + tig0034034:4548-4567 Msa1452610:intron 35.0%
TCCACATACTTTAACCTAAC+CGG - tig0034034:4565-4584 Msa1452610:intergenic 35.0%
GTTAGGTTAAAGTATGTGGA+CGG + tig0034034:4565-4584 Msa1452610:intron 35.0%
TGTGAACGAGACAAACAAAA+AGG - tig0034034:4622-4641 Msa1452610:intergenic 35.0%
TGAAAGTGACAAGACAACAT+AGG + tig0034034:4787-4806 Msa1452610:intron 35.0%
GAAAGTGACAAGACAACATA+GGG + tig0034034:4788-4807 Msa1452610:intron 35.0%
CAGTCAAAGCAATTAAGTGA+AGG - tig0034034:4913-4932 Msa1452610:intergenic 35.0%
CGAAATAAGATCCATGAGTT+AGG + tig0034034:5132-5151 Msa1452610:intron 35.0%
! GTGGTCGTTCATTTAAAATC+AGG - tig0034034:5287-5306 Msa1452610:intergenic 35.0%
CTTAGCAGTCAAAACATTTG+TGG - tig0034034:5306-5325 Msa1452610:intergenic 35.0%
!!! AATGTTTTGACTGCTAAGAC+CGG + tig0034034:5308-5327 Msa1452610:intron 35.0%
!!! CCGGAATGTTTTAGTTAACT+TGG + tig0034034:5327-5346 Msa1452610:intron 35.0%
TATAACTCTTACCGTGGATA+TGG - tig0034034:5650-5669 Msa1452610:intergenic 35.0%
ATTGTGTATAACTCTTACCG+TGG - tig0034034:5656-5675 Msa1452610:intergenic 35.0%
ACATAATTAACGGTGGAGAT+CGG - tig0034034:5683-5702 Msa1452610:intergenic 35.0%
! ATGCTGATTGTAACGTATGA+AGG + tig0034034:5834-5853 Msa1452610:CDS 35.0%
AATATGAGTGGAAGTTAAGG+TGG + tig0034034:6023-6042 Msa1452610:three_prime_UTR 35.0%
ATATGAGTGGAAGTTAAGGT+GGG + tig0034034:6024-6043 Msa1452610:three_prime_UTR 35.0%
GTTAGAATGGCATGAGAAGA+GGG - tig0034034:3269-3288 Msa1378350:intergenic 40.0%
AGTTAGAATGGCATGAGAAG+AGG - tig0034034:3270-3289 Msa1378350:intergenic 40.0%
AAAATGGCAGTGGAACTCAT+GGG + tig0034034:3330-3349 Msa1452610:five_prime_UTR 40.0%
ATCAGAAGGACTCAAAGGTA+TGG + tig0034034:3395-3414 Msa1452610:five_prime_UTR 40.0%
!! TTGGTTGATGAGAAAGGGTT+AGG - tig0034034:3431-3450 Msa1452610:intergenic 40.0%
!!! GAAAGTGTTTTGGTAGAGAC+AGG - tig0034034:3635-3654 Msa1452610:intergenic 40.0%
CTCAAACACGAAAAACTCCA+TGG + tig0034034:3780-3799 Msa1452610:CDS 40.0%
TCATCTGCTATTACTGGTGA+TGG + tig0034034:3865-3884 Msa1452610:CDS 40.0%
! TTCGATTTTTCTCAACCCAG+CGG + tig0034034:3912-3931 Msa1452610:CDS 40.0%
!! GAAAAGGTGTCATGATCATG+GGG + tig0034034:3987-4006 Msa1452610:CDS 40.0%
! AAACGCAGATAAAGGAGTGT+AGG - tig0034034:4070-4089 Msa1452610:intergenic 40.0%
CAGAAACACCTTCCATTCAA+AGG - tig0034034:4121-4140 Msa1452610:intergenic 40.0%
TCGCAAACACTACCACATAT+TGG - tig0034034:4148-4167 Msa1452610:intergenic 40.0%
!!! GGACATGTATTTTGAAACGG+AGG - tig0034034:4453-4472 Msa1452610:intergenic 40.0%
!!! GGACATGTATTTTGAAACGG+AGG + tig0034034:4453-4472 Msa1452610:intron 40.0%
ACCGGTTAGGTTAAAGTATG+TGG + tig0034034:4561-4580 Msa1452610:intron 40.0%
! ACGTTTGGAGTCAACGATTT+CGG + tig0034034:4723-4742 Msa1452610:intron 40.0%
TATTATGCTAACATGCGCTG+GGG - tig0034034:4969-4988 Msa1452610:intergenic 40.0%
CTATTATGCTAACATGCGCT+GGG - tig0034034:4970-4989 Msa1452610:intergenic 40.0%
ACTATTATGCTAACATGCGC+TGG - tig0034034:4971-4990 Msa1452610:intergenic 40.0%
GACAACAAAACCCTAACTCA+TGG - tig0034034:5146-5165 Msa1452610:intergenic 40.0%
!!! CCTCTTCACCCTATTTTTTC+TGG - tig0034034:5530-5549 Msa1452610:intergenic 40.0%
CCAGAAAAAATAGGGTGAAG+AGG + tig0034034:5527-5546 Msa1452610:intron 40.0%
TACAAGTGTAGCACTGTAAG+AGG + tig0034034:5765-5784 Msa1452610:CDS 40.0%
ACAAGTGTAGCACTGTAAGA+GGG + tig0034034:5766-5785 Msa1452610:CDS 40.0%
TACGTTACAATCAGCATCGT+TGG - tig0034034:5831-5850 Msa1452610:intergenic 40.0%
AAATACCAAACCCACAATCC+CGG - tig0034034:5904-5923 Msa1452610:intergenic 40.0%
TATGAGTGGAAGTTAAGGTG+GGG + tig0034034:6025-6044 Msa1452610:three_prime_UTR 40.0%
TTGGAAGGGTGAAAGGTTGA+GGG - tig0034034:3226-3245 Msa1378350:intergenic 45.0%
TTTGGAAGGGTGAAAGGTTG+AGG - tig0034034:3227-3246 Msa1378350:intergenic 45.0%
AGTGTGTTTGGAAGGGTGAA+AGG - tig0034034:3233-3252 Msa1378350:intergenic 45.0%
! GGAGGAAAGTGTGTTTGGAA+GGG - tig0034034:3240-3259 Msa1378350:intergenic 45.0%
CAAAATGGCAGTGGAACTCA+TGG + tig0034034:3329-3348 Msa1452610:five_prime_UTR 45.0%
AAATGGCAGTGGAACTCATG+GGG + tig0034034:3331-3350 Msa1452610:five_prime_UTR 45.0%
TTCTGATGCAGCCTCTTGTA+TGG - tig0034034:3382-3401 Msa1452610:intergenic 45.0%
ATACAAGAGGCTGCATCAGA+AGG + tig0034034:3381-3400 Msa1452610:five_prime_UTR 45.0%
GAACTTAGAAACGGTGTGGT+CGG - tig0034034:3475-3494 Msa1452610:intergenic 45.0%
AAGATGAGGAGGAATGAACC+GGG - tig0034034:3551-3570 Msa1452610:intergenic 45.0%
GAAGATGAGGAGGAATGAAC+CGG - tig0034034:3552-3571 Msa1452610:intergenic 45.0%
TGAATCTGAACCGGTTGAAC+CGG - tig0034034:3582-3601 Msa1452610:intergenic 45.0%
!! GGAGTGGATTGAATCTGAAC+CGG - tig0034034:3591-3610 Msa1452610:intergenic 45.0%
!!! TGTTTTGGTAGAGACAGGGT+TGG - tig0034034:3630-3649 Msa1452610:intergenic 45.0%
!!! GACGGAGAAGGAAAGTGTTT+TGG - tig0034034:3645-3664 Msa1452610:intergenic 45.0%
AAATCGAGTGTCATGCTGTG+TGG - tig0034034:3733-3752 Msa1452610:intergenic 45.0%
CGAGAATTCAAGCTCAACCA+TGG - tig0034034:3800-3819 Msa1452610:intergenic 45.0%
GGTTGAGCTTGAATTCTCGA+AGG + tig0034034:3801-3820 Msa1452610:CDS 45.0%
!! ACTGGTGATGGAAGCGTTAA+CGG + tig0034034:3877-3896 Msa1452610:CDS 45.0%
! GAAGCGTTAACGGGAAACAA+GGG + tig0034034:3887-3906 Msa1452610:CDS 45.0%
AACACTCCGATGACGTTTCA+GGG + tig0034034:4010-4029 Msa1452610:CDS 45.0%
ATTCGACCCTGAAACGTCAT+CGG - tig0034034:4019-4038 Msa1452610:intergenic 45.0%
TGTACCTTCTCTTGACACAG+TGG - tig0034034:4047-4066 Msa1452610:intergenic 45.0%
ACGTGAATTTGTCGTGTGAG+TGG + tig0034034:4691-4710 Msa1452610:intron 45.0%
CGTGAATTTGTCGTGTGAGT+GGG + tig0034034:4692-4711 Msa1452610:intron 45.0%
GTGAATTTGTCGTGTGAGTG+GGG + tig0034034:4693-4712 Msa1452610:intron 45.0%
! TTTGGAGTCAACGATTTCGG+TGG + tig0034034:4726-4745 Msa1452610:intron 45.0%
ACCGGCGATAAGTTCAAAGA+CGG + tig0034034:5561-5580 Msa1452610:CDS 45.0%
! AGTACTCGTGGCGGAAAATA+CGG + tig0034034:5602-5621 Msa1452610:CDS 45.0%
ATACGGTCAGAAACCGATCA+AGG + tig0034034:5619-5638 Msa1452610:intron 45.0%
TACGGTCAGAAACCGATCAA+GGG + tig0034034:5620-5639 Msa1452610:intron 45.0%
GGATATGGTGATCCCTTGAT+CGG - tig0034034:5635-5654 Msa1452610:intergenic 45.0%
TCAAGGGATCACCATATCCA+CGG + tig0034034:5636-5655 Msa1452610:intron 45.0%
TACTATTCAAGCTGCGATGC+AGG + tig0034034:5869-5888 Msa1452610:CDS 45.0%
ATTGGAGGAAAGTGGGAGAA+TGG + tig0034034:5953-5972 Msa1452610:three_prime_UTR 45.0%
! GGGAGGAAAGTGTGTTTGGA+AGG - tig0034034:3241-3260 Msa1378350:intergenic 50.0%
! GAGAGGGAGGAAAGTGTGTT+TGG - tig0034034:3245-3264 Msa1378350:intergenic 50.0%
GCTGCATCAGAAGGACTCAA+AGG + tig0034034:3390-3409 Msa1452610:five_prime_UTR 50.0%
AGATGAGGAGGAATGAACCG+GGG - tig0034034:3550-3569 Msa1452610:intergenic 50.0%
CTCCTCATCTTCATCACCAC+CGG + tig0034034:3560-3579 Msa1452610:five_prime_UTR 50.0%
! AACCGGTGGTGATGAAGATG+AGG - tig0034034:3565-3584 Msa1452610:intergenic 50.0%
!! TTCATCACCACCGGTTCAAC+CGG + tig0034034:3569-3588 Msa1452610:five_prime_UTR 50.0%
GATTCAATCCACTCCTTCGC+CGG + tig0034034:3596-3615 Msa1452610:five_prime_UTR 50.0%
!! GACAGGGTTGGTGTTTGAAC+CGG - tig0034034:3618-3637 Msa1452610:intergenic 50.0%
ACACTTTCCTTCTCCGTCAC+CGG + tig0034034:3647-3666 Msa1452610:five_prime_UTR 50.0%
GTGTCATGCTGTGTGGTTTG+CGG - tig0034034:3726-3745 Msa1452610:intergenic 50.0%
GAGCTCAAAACGACGTCGTT+TGG - tig0034034:3763-3782 Msa1452610:intergenic 50.0%
!! CTGGTGATGGAAGCGTTAAC+GGG + tig0034034:3878-3897 Msa1452610:CDS 50.0%
!! GGAAGCGTTAACGGGAAACA+AGG + tig0034034:3886-3905 Msa1452610:CDS 50.0%
GAACACTCCGATGACGTTTC+AGG + tig0034034:4009-4028 Msa1452610:CDS 50.0%
! AGTGCCACTGTGTCAAGAGA+AGG + tig0034034:4040-4059 Msa1452610:CDS 50.0%
TTTGTCGTGTGAGTGGGGTA+AGG + tig0034034:4698-4717 Msa1452610:intron 50.0%
! GAAGAGGACTGTGAGAGTAC+CGG + tig0034034:5543-5562 Msa1452610:CDS 50.0%
GCCGTCTTTGAACTTATCGC+CGG - tig0034034:5565-5584 Msa1452610:intergenic 50.0%
AAAGACGGCCGATATACCAC+CGG + tig0034034:5576-5595 Msa1452610:CDS 50.0%
GTACTCGTCCGGTGGTATAT+CGG - tig0034034:5587-5606 Msa1452610:intergenic 50.0%
GGGTGAAAGGTTGAGGGATG+TGG - tig0034034:3220-3239 Msa1378350:intergenic 55.0%
ATGAGAAGAGGGAGAGAGGG+AGG - tig0034034:3258-3277 Msa1378350:intergenic 55.0%
GGCATGAGAAGAGGGAGAGA+GGG - tig0034034:3261-3280 Msa1378350:intergenic 55.0%
TGGCATGAGAAGAGGGAGAG+AGG - tig0034034:3262-3281 Msa1378350:intergenic 55.0%
! CGGTGGTGATGAAGATGAGG+AGG - tig0034034:3562-3581 Msa1452610:intergenic 55.0%
ATCTGAACCGGTTGAACCGG+TGG - tig0034034:3579-3598 Msa1452610:intergenic 55.0%
TGTTTGAACCGGCGAAGGAG+TGG - tig0034034:3607-3626 Msa1452610:intergenic 55.0%
! GTTGGTGTTTGAACCGGCGA+AGG - tig0034034:3612-3631 Msa1452610:intergenic 55.0%
TGCGGTTGAACAAAGCTCGC+CGG - tig0034034:3708-3727 Msa1452610:intergenic 55.0%
!! AGATAGTTGGTGTCGCCGCT+GGG - tig0034034:3930-3949 Msa1452610:intergenic 55.0%
! GGTTTTCCGCCGGAGATAGT+TGG - tig0034034:3943-3962 Msa1452610:intergenic 55.0%
GAGTGGGGTAAGGCTACGTT+TGG + tig0034034:4708-4727 Msa1452610:intron 55.0%
GGAGTCAACGATTTCGGTGG+TGG + tig0034034:4729-4748 Msa1452610:intron 55.0%
! CAACGATTTCGGTGGTGGTG+TGG + tig0034034:4734-4753 Msa1452610:intron 55.0%
ATGCTAACATGCGCTGGGGT+GGG - tig0034034:4965-4984 Msa1452610:intergenic 55.0%
TATGCTAACATGCGCTGGGG+TGG - tig0034034:4966-4985 Msa1452610:intergenic 55.0%
GCTCCACGTGTTTCCTTGCT+GGG - tig0034034:5794-5813 Msa1452610:intergenic 55.0%
GAGAACGCATCCGGGATTGT+GGG + tig0034034:5891-5910 Msa1452610:CDS 55.0%
GGAGGAAAGTGGGAGAATGG+AGG + tig0034034:5956-5975 Msa1452610:three_prime_UTR 55.0%
TTAACCGAACCGGTCACGCC+CGG + tig0034034:3514-3533 Msa1452610:five_prime_UTR 60.0%
TGACGCACAGAGATTGGCGC+CGG - tig0034034:3681-3700 Msa1452610:intergenic 60.0%
AATCTCTGTGCGTCACGCGC+CGG + tig0034034:3686-3705 Msa1452610:five_prime_UTR 60.0%
!! GAGATAGTTGGTGTCGCCGC+TGG - tig0034034:3931-3950 Msa1452610:intergenic 60.0%
GCGGCGACACCAACTATCTC+CGG + tig0034034:3931-3950 Msa1452610:CDS 60.0%
GCGACACCAACTATCTCCGG+CGG + tig0034034:3934-3953 Msa1452610:CDS 60.0%
TTAGACGGCACCGCCGATAG+CGG - tig0034034:3967-3986 Msa1452610:intergenic 60.0%
!! CGGCGGTGCCGTCTAAGAAA+AGG + tig0034034:3971-3990 Msa1452610:CDS 60.0%
TACCACCGGACGAGTACTCG+TGG + tig0034034:5590-5609 Msa1452610:CDS 60.0%
TTCCGCCACGAGTACTCGTC+CGG - tig0034034:5598-5617 Msa1452610:intergenic 60.0%
!! CTGTAAGAGGGTGCCCAGCA+AGG + tig0034034:5778-5797 Msa1452610:CDS 60.0%
GTGCCCAGCAAGGAAACACG+TGG + tig0034034:5788-5807 Msa1452610:CDS 60.0%
CGCTCCACGTGTTTCCTTGC+TGG - tig0034034:5795-5814 Msa1452610:intergenic 60.0%
GCGATGCAGGAGAACGCATC+CGG + tig0034034:5882-5901 Msa1452610:CDS 60.0%
CGATGCAGGAGAACGCATCC+GGG + tig0034034:5883-5902 Msa1452610:CDS 60.0%
GGAGAACGCATCCGGGATTG+TGG + tig0034034:5890-5909 Msa1452610:CDS 60.0%
CGCATCCGGGATTGTGGGTT+TGG + tig0034034:5896-5915 Msa1452610:CDS 60.0%
TGAACCGGGCGTGACCGGTT+CGG - tig0034034:3521-3540 Msa1452610:intergenic 65.0%
!! GACAGTGCCGGTGACGGAGA+AGG - tig0034034:3657-3676 Msa1452610:intergenic 65.0%
TCCGTCACCGGCACTGTCAC+CGG + tig0034034:3659-3678 Msa1452610:five_prime_UTR 65.0%
!! ATTGGCGCCGGTGACAGTGC+CGG - tig0034034:3669-3688 Msa1452610:intergenic 65.0%
GGCGCGTGACGCACAGAGAT+TGG - tig0034034:3687-3706 Msa1452610:intergenic 65.0%
!! CGATAGCGGCGGTTTTCCGC+CGG - tig0034034:3953-3972 Msa1452610:intergenic 65.0%
CGGCGGAAAACCGCCGCTAT+CGG + tig0034034:3951-3970 Msa1452610:CDS 65.0%
CGGAAAACCGCCGCTATCGG+CGG + tig0034034:3954-3973 Msa1452610:CDS 65.0%
CACCGGACGAGTACTCGTGG+CGG + tig0034034:5593-5612 Msa1452610:CDS 65.0%
GCGTCTGAACCGGGCGTGAC+CGG - tig0034034:3526-3545 Msa1452610:intergenic 70.0%
AACCGGGGCGCGTCTGAACC+GGG - tig0034034:3535-3554 Msa1452610:intergenic 70.0%
GAACCGGGGCGCGTCTGAAC+CGG - tig0034034:3536-3555 Msa1452610:intergenic 70.0%
!! GCCGGTGACAGTGCCGGTGA+CGG - tig0034034:3663-3682 Msa1452610:intergenic 70.0%
CGCCACGAGTACTCGTCCGG+TGG - tig0034034:5595-5614 Msa1452610:intergenic 70.0%
! GACGGCACCGCCGATAGCGG+CGG - tig0034034:3964-3983 Msa1452610:intergenic 75.0%
! CGCCCGGTTCAGACGCGCCC+CGG + tig0034034:3530-3549 Msa1452610:five_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
tig0034034 gene 3192 6154 3192 ID=Msa1452610;Name=Msa1452610
tig0034034 mRNA 3192 6154 3192 ID=Msa1452610-mRNA-1;Parent=Msa1452610;Name=Msa1452610-mRNA-1;_AED=0.02;_eAED=0.02;_QI=547|0.5|0.66|1|1|1|3|219|197
tig0034034 exon 3192 4061 3192 ID=Msa1452610-mRNA-1:exon:18696;Parent=Msa1452610-mRNA-1
tig0034034 exon 5531 5623 5531 ID=Msa1452610-mRNA-1:exon:18697;Parent=Msa1452610-mRNA-1
tig0034034 exon 5758 6154 5758 ID=Msa1452610-mRNA-1:exon:18698;Parent=Msa1452610-mRNA-1
tig0034034 five_prime_UTR 3192 3738 3192 ID=Msa1452610-mRNA-1:five_prime_utr;Parent=Msa1452610-mRNA-1
tig0034034 CDS 3739 4061 3739 ID=Msa1452610-mRNA-1:cds;Parent=Msa1452610-mRNA-1
tig0034034 CDS 5531 5623 5531 ID=Msa1452610-mRNA-1:cds;Parent=Msa1452610-mRNA-1
tig0034034 CDS 5758 5935 5758 ID=Msa1452610-mRNA-1:cds;Parent=Msa1452610-mRNA-1
tig0034034 three_prime_UTR 5936 6154 5936 ID=Msa1452610-mRNA-1:three_prime_utr;Parent=Msa1452610-mRNA-1
Gene Sequence

>Msa1452610

ATGACACTCGATTTCACGAAGCCAAACGACGTCGTTTTGAGCTCAAACACGAAAAACTCCATGGTTGAGCTTGAATTCTCGAAGGATACAGCAACGTTTAGCGTTTCTTCAGCTTCATCGTTTATGTCATCTGCTATTACTGGTGATGGAAGCGTTAACGGGAAACAAGGGTCTTCGATTTTTCTCAACCCAGCGGCGACACCAACTATCTCCGGCGGAAAACCGCCGCTATCGGCGGTGCCGTCTAAGAAAAGGTGTCATGATCATGGGGAACACTCCGATGACGTTTCAGGGTCGAATAAGTGCCACTGTGTCAAGAGAAGAAAAAATAGGGTGAAGAGGACTGTGAGAGTACCGGCGATAAGTTCAAAGACGGCCGATATACCACCGGACGAGTACTCGTGGCGGAAAATACGAGGCTATTACAAGTGTAGCACTGTAAGAGGGTGCCCAGCAAGGAAACACGTGGAGCGTGCAACAGATGATCCAACGATGCTGATTGTAACGTATGAAGGAGAGCACAGACATACTATTCAAGCTGCGATGCAGGAGAACGCATCCGGGATTGTGGGTTTGGTATTTGAGTCAACGTAA
Protein sequence

>Msa1452610

MTLDFTKPNDVVLSSNTKNSMVELEFSKDTATFSVSSASSFMSSAITGDGSVNGKQGSSIFLNPAATPTISGGKPPLSAVPSKKRCHDHGEHSDDVSGSNKCHCVKRRKNRVKRTVRVPAISSKTADIPPDEYSWRKIRGYYKCSTVRGCPARKHVERATDDPTMLIVTYEGEHRHTIQAAMQENASGIVGLVFEST*