AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0860820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0860820 MtrunA17_Chr5g0440341 99.017 407 4 0 1 407 1 407 0.0 841
Msa0860820 MtrunA17_Chr7g0254001 72.441 381 104 1 26 406 13 392 0.0 549
Msa0860820 MtrunA17_Chr7g0259501 58.901 382 144 6 30 406 36 409 1.06e-158 453
Msa0860820 MtrunA17_Chr1g0185861 58.005 381 147 6 31 406 41 413 2.50e-152 437
Msa0860820 MtrunA17_Chr4g0002921 76.374 182 43 0 29 210 23 204 1.69e-100 303
Msa0860820 MtrunA17_Chr3g0112351 42.697 89 48 1 251 339 6 91 1.68e-17 77.8
Msa0860820 MtrunA17_Chr5g0394261 31.447 159 88 5 183 339 521 660 3.30e-14 74.7
Msa0860820 MtrunA17_Chr7g0259851 27.473 182 101 6 183 362 511 663 7.79e-14 73.6
Msa0860820 MtrunA17_Chr1g0205751 30.818 159 89 5 183 339 524 663 1.64e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0860820 AT3G03740.1 71.139 395 108 3 12 404 31 421 0.0 574
Msa0860820 AT5G21010.1 68.672 399 120 3 13 406 10 408 0.0 558
Msa0860820 AT3G43700.1 66.015 409 136 1 1 406 5 413 0.0 550
Msa0860820 AT3G43700.2 66.193 352 116 1 1 349 5 356 5.80e-174 490
Msa0860820 AT3G43700.3 66.954 348 112 1 1 345 5 352 3.31e-173 488
Msa0860820 AT3G06190.1 55.746 409 170 5 2 406 3 404 4.69e-157 449
Msa0860820 AT5G19000.1 56.430 381 155 5 30 406 32 405 6.23e-149 428
Msa0860820 AT5G19000.3 56.430 381 155 5 30 406 32 405 6.23e-149 428
Msa0860820 AT2G39760.1 54.615 390 169 5 21 406 14 399 3.94e-148 426
Msa0860820 AT5G19000.2 51.683 416 155 6 30 406 32 440 1.29e-141 411
Msa0860820 AT3G06190.5 58.529 340 135 3 2 339 3 338 3.18e-140 404
Msa0860820 AT2G39760.4 57.453 322 133 2 21 341 14 332 3.64e-133 386
Msa0860820 AT2G39760.3 57.453 322 133 2 21 341 14 332 3.64e-133 386
Msa0860820 AT2G39760.2 57.453 322 133 2 21 341 14 332 6.01e-133 385
Msa0860820 AT3G06190.4 61.961 255 96 1 2 255 3 257 3.55e-109 323
Msa0860820 AT3G06190.3 61.961 255 96 1 2 255 3 257 3.81e-109 323
Msa0860820 AT3G06190.2 59.770 261 103 1 2 260 3 263 3.96e-108 320
Msa0860820 AT5G19330.1 31.088 193 105 7 195 385 535 701 2.61e-16 81.6
Msa0860820 AT5G13060.1 28.571 175 106 4 194 365 561 719 8.28e-13 70.9
Msa0860820 AT3G56230.1 28.834 163 101 4 209 369 121 270 5.17e-11 63.5

Find 132 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATGGCGGTTGTTTATTT+AGG 0.177620 5_4:-59902009 None:intergenic
ACACTAATGTTTGCAGAATT+AGG 0.238047 5_4:+59906440 Msa0860820:three_prime_UTR
GCTCTTCTGCAATATACTTT+TGG 0.256516 5_4:+59906322 Msa0860820:three_prime_UTR
TCCTTATACCTTGAAATATA+AGG 0.259361 5_4:+59902404 Msa0860820:CDS
CCCTTATATTTCAAGGTATA+AGG 0.262839 5_4:-59902405 None:intergenic
TCATGGCGGTTGTTTATTTA+GGG 0.277292 5_4:-59902008 None:intergenic
TGTCGGAGATGATGCGTTTC+CGG 0.295840 5_4:-59902031 None:intergenic
ATCACACTTTGGTGCACTAT+TGG 0.301896 5_4:+59903962 Msa0860820:CDS
GGATAATTCTGCGTATGTTT+CGG 0.314889 5_4:+59902257 Msa0860820:CDS
GCTATCAACGTCTCCGAAAC+TGG 0.316312 5_4:-59904447 None:intergenic
TGTGATCCAATGTCAGATTC+TGG 0.335141 5_4:-59903945 None:intergenic
GAATTGGGGAAGAAGTGTTT+TGG 0.345004 5_4:-59901949 None:intergenic
TTATCGAGCGCGAGATCGTT+GGG 0.358029 5_4:-59902083 None:intergenic
TGACATCCAGTTCAAAAGTA+TGG 0.360866 5_4:-59906362 None:intergenic
CAGAATTAGGTTCAATAGAA+TGG 0.379209 5_4:+59906453 Msa0860820:three_prime_UTR
TAGTTCATGTTTAAGTTAGA+AGG 0.380611 5_4:+59906589 Msa0860820:three_prime_UTR
CATGCTACCCTTATATTTCA+AGG 0.389146 5_4:-59902412 None:intergenic
TTAGCTGCAGCAGACAAGTA+TGG 0.390342 5_4:+59904477 Msa0860820:CDS
TACTCGCTCGCAAAGGGAAT+GGG 0.413555 5_4:+59902147 Msa0860820:CDS
GAGATCTTGAAGACAGTTGC+TGG 0.421772 5_4:+59905950 Msa0860820:CDS
TCGATAACGCAAACGGTTAA+CGG 0.437798 5_4:+59902099 Msa0860820:CDS
AGTGATAATGTTGAAAGAAT+GGG 0.442867 5_4:+59906135 Msa0860820:three_prime_UTR
TCAGATGGTGGTGACACAAT+TGG 0.443947 5_4:+59906031 Msa0860820:CDS
TCTTTCAACACATAAATACT+TGG 0.446301 5_4:-59906621 None:intergenic
AGATGATGCGTTTCCGGTCA+TGG 0.446701 5_4:-59902025 None:intergenic
GTCACCACCATCTGAAAGTT+GGG 0.448909 5_4:-59906023 None:intergenic
CTATTGAAACATAGAGAAGT+TGG 0.449354 5_4:-59906197 None:intergenic
GTGGCTGGGGAGAAGTTTCC+TGG 0.449811 5_4:+59904017 Msa0860820:CDS
AGTATTTATGTGTTGAAAGA+TGG 0.451381 5_4:+59906624 Msa0860820:three_prime_UTR
TTTCAAGAGAGCGATCAAAA+TGG 0.451722 5_4:-59902377 None:intergenic
CCATGTCCACCTCTTCTGTA+AGG 0.453653 5_4:-59904398 None:intergenic
CCTTATACCTTGAAATATAA+GGG 0.454581 5_4:+59902405 Msa0860820:CDS
CCTTTGCGAGCGAGTACCCT+TGG 0.463249 5_4:-59902140 None:intergenic
GCTTGTTGATCAGAGTGGTC+AGG 0.473140 5_4:+59902335 Msa0860820:CDS
GAGGGTGATAGTTGCAGTAC+AGG 0.482747 5_4:+59905977 Msa0860820:CDS
TCCTGGTCATAAGTTGGTGT+TGG 0.483144 5_4:+59904034 Msa0860820:CDS
TGTCACCACCATCTGAAAGT+TGG 0.485682 5_4:-59906024 None:intergenic
TGTTTGAACAAAGGATATCA+AGG 0.491503 5_4:-59906420 None:intergenic
TTTGATCGCTCTCTTGAAAG+TGG 0.498995 5_4:+59902381 Msa0860820:CDS
TCCTCCGGATTCTTCCCATC+GGG 0.499966 5_4:-59902237 None:intergenic
AAGTGATAATGTTGAAAGAA+TGG 0.501300 5_4:+59906134 Msa0860820:three_prime_UTR
CTATCCCGATGGGAAGAATC+CGG 0.502018 5_4:+59902233 Msa0860820:CDS
CTCGCAAAGGGAATGGGAGT+TGG 0.506650 5_4:+59902153 Msa0860820:CDS
AAATAAACAACCGCCATGAC+CGG 0.506651 5_4:+59902012 Msa0860820:exon
CAACTGTACAGTTGGAGTTG+TGG 0.508711 5_4:+59903881 Msa0860820:CDS
TCGCACAAATTCTTGATCCA+AGG 0.511740 5_4:+59902123 Msa0860820:CDS
AAGACAGTTGCTGGCTGTGA+GGG 0.511783 5_4:+59905959 Msa0860820:CDS
GAGGATAACGGCGCCGGTGA+CGG 0.513532 5_4:-59902060 None:intergenic
TTGAAAATCAACTGTACAGT+TGG 0.516183 5_4:+59903873 Msa0860820:CDS
GTACTCGCTCGCAAAGGGAA+TGG 0.516556 5_4:+59902146 Msa0860820:CDS
GTTATCGAGCGCGAGATCGT+TGG 0.516701 5_4:-59902084 None:intergenic
TTCATCGCGTTGGCGAGTGA+AGG 0.518184 5_4:+59902282 Msa0860820:CDS
GAGTGGTCAGGGGAAGCATA+AGG 0.519043 5_4:+59902347 Msa0860820:CDS
TTCAAAAGTATGGATGGACT+TGG 0.519941 5_4:-59906352 None:intergenic
GAAAGAATGGGGATAGGAAA+AGG 0.520832 5_4:+59906147 Msa0860820:three_prime_UTR
AGGTAGACTAGATGCTATGC+AGG 0.523812 5_4:+59906239 Msa0860820:three_prime_UTR
AAGATCTCTGACTGTAGCCA+TGG 0.528447 5_4:-59905935 None:intergenic
TGATATCTGTTGTCTCGCAT+TGG 0.528821 5_4:+59906076 Msa0860820:exon
TTAACTCTGTGGCATGGCAA+TGG 0.529102 5_4:-59904587 None:intergenic
GAGATCGTTGGGGAGGATAA+CGG 0.531477 5_4:-59902072 None:intergenic
CCTTACAGAAGAGGTGGACA+TGG 0.531958 5_4:+59904398 Msa0860820:CDS
CAAGGGTACTCGCTCGCAAA+GGG 0.532648 5_4:+59902141 Msa0860820:CDS
TCCGACACCATCACCGTCAC+CGG 0.533301 5_4:+59902047 Msa0860820:CDS
TCTGACATTGGATCACACTT+TGG 0.535953 5_4:+59903951 Msa0860820:CDS
GAAGTTTCCTGGTCATAAGT+TGG 0.536194 5_4:+59904028 Msa0860820:CDS
CTTGTTGATCAGAGTGGTCA+GGG 0.537245 5_4:+59902336 Msa0860820:CDS
CGCGTTGGCGAGTGAAGGAA+CGG 0.541562 5_4:+59902287 Msa0860820:CDS
TGCAGCAGACAAGTATGGCT+TGG 0.543450 5_4:+59904482 Msa0860820:CDS
GGTTATGTAAATGTCTCCGA+TGG 0.544256 5_4:+59906260 Msa0860820:three_prime_UTR
ATCCAGTTCAAAAGTATGGA+TGG 0.546823 5_4:-59906358 None:intergenic
GCACTATTGGAGAATAATGA+AGG 0.550810 5_4:+59903975 Msa0860820:CDS
GCGATCTACTTCTATCCCGA+TGG 0.552996 5_4:+59902222 Msa0860820:CDS
AACGGCGCCGGTGACGGTGA+TGG 0.554496 5_4:-59902054 None:intergenic
TTTGCTTCTCAAAATCTAGC+CGG 0.554738 5_4:+59904627 Msa0860820:CDS
CGCACAAATTCTTGATCCAA+GGG 0.554858 5_4:+59902124 Msa0860820:CDS
ATCCTCCGGATTCTTCCCAT+CGG 0.555082 5_4:-59902238 None:intergenic
ATATCAAGGGACAATGCAGT+TGG 0.556162 5_4:-59906406 None:intergenic
AGGGTGATAGTTGCAGTACA+GGG 0.557225 5_4:+59905978 Msa0860820:CDS
CATGTTCCAGAATCTGACAT+TGG 0.559473 5_4:+59903939 Msa0860820:CDS
TCTCGTCTTTGCAAGGACAT+TGG 0.559559 5_4:+59904528 Msa0860820:CDS
TCACCGTCGGAGGGTATCAG+TGG 0.564407 5_4:+59902199 Msa0860820:CDS
CTCGCGCTCGATAACGCAAA+CGG 0.564722 5_4:+59902092 Msa0860820:CDS
GTCAGCCAAGGTCAAAATGT+TGG 0.566131 5_4:-59904565 None:intergenic
GCCGGTGACGGTGATGGTGT+CGG 0.567480 5_4:-59902048 None:intergenic
TGTGTTGAAAGATGGCAGAA+TGG 0.567639 5_4:+59906632 Msa0860820:three_prime_UTR
TGAAACATAGAGAAGTTGGC+AGG 0.568743 5_4:-59906193 None:intergenic
GTGATAATGTTGAAAGAATG+GGG 0.569071 5_4:+59906136 Msa0860820:three_prime_UTR
AATGTTGAAAGAATGGGGAT+AGG 0.571394 5_4:+59906141 Msa0860820:three_prime_UTR
CAGAGATTCCCTTACAGAAG+AGG 0.571846 5_4:+59904389 Msa0860820:CDS
GTTGGGGAGGATAACGGCGC+CGG 0.572963 5_4:-59902066 None:intergenic
TGTGACAGATTTAGAACCAA+AGG 0.576907 5_4:+59904124 Msa0860820:CDS
GAAGACAGTTGCTGGCTGTG+AGG 0.579653 5_4:+59905958 Msa0860820:CDS
ATAGGAAAAGGCAAAAGAGA+AGG 0.580863 5_4:+59906159 Msa0860820:three_prime_UTR
ATGGTGGTGACACAATTGGC+AGG 0.581902 5_4:+59906035 Msa0860820:CDS
CATGTCCACCTCTTCTGTAA+GGG 0.584025 5_4:-59904397 None:intergenic
CGATCTACTTCTATCCCGAT+GGG 0.588650 5_4:+59902223 Msa0860820:CDS
CCAAGGGTACTCGCTCGCAA+AGG 0.590267 5_4:+59902140 Msa0860820:CDS
GTGCGAGTCTCGTCTTTGCA+AGG 0.590794 5_4:+59904521 Msa0860820:CDS
AAACATTAGTGTTTGAACAA+AGG 0.591466 5_4:-59906429 None:intergenic
AAAGTGTTAATGTTTCTGGA+TGG 0.592326 5_4:+59906545 Msa0860820:three_prime_UTR
GCCAACACCAACTTATGACC+AGG 0.592965 5_4:-59904035 None:intergenic
GTTATGTAAATGTCTCCGAT+GGG 0.594437 5_4:+59906261 Msa0860820:three_prime_UTR
GTGTGGGCCCAACTTTCAGA+TGG 0.597445 5_4:+59906016 Msa0860820:CDS
GATGGCAGAATGGATTGTAG+TGG 0.598277 5_4:+59906642 Msa0860820:three_prime_UTR
GTTTGAACAAAGGATATCAA+GGG 0.613734 5_4:-59906419 None:intergenic
AGATCTCTGACTGTAGCCAT+GGG 0.614943 5_4:-59905934 None:intergenic
AGATTCCCTTACAGAAGAGG+TGG 0.616072 5_4:+59904392 Msa0860820:CDS
TGGGCCCAACTTTCAGATGG+TGG 0.618037 5_4:+59906019 Msa0860820:CDS
ACATGAATAGAGTTAAGCTG+TGG 0.618655 5_4:-59903921 None:intergenic
CACCGTCGGAGGGTATCAGT+GGG 0.619698 5_4:+59902200 Msa0860820:CDS
GACTTGTTGCAGCTGTCATG+AGG 0.622166 5_4:+59905879 Msa0860820:intron
TCGAAATTCTGGAGATCTAG+CGG 0.629987 5_4:-59904057 None:intergenic
GCAGCTGTCATGAGGTCGGA+TGG 0.631226 5_4:+59905887 Msa0860820:intron
TGTTGCAGCTGTCATGAGGT+CGG 0.632813 5_4:+59905883 Msa0860820:intron
GGCATGGCAATGGTCAGCCA+AGG 0.641941 5_4:-59904577 None:intergenic
ACATACGCAGAATTATCCTC+CGG 0.650784 5_4:-59902252 None:intergenic
TCTGTAGATAAAATGCAGCA+TGG 0.650987 5_4:-59904370 None:intergenic
CTAAACAACTTACACCCCAT+CGG 0.651093 5_4:-59906276 None:intergenic
CGAGCGCGAGATCGTTGGGG+AGG 0.656980 5_4:-59902079 None:intergenic
CAGACAAGTATGGCTTGGAG+AGG 0.667523 5_4:+59904487 Msa0860820:CDS
CATGAATAGAGTTAAGCTGT+GGG 0.672460 5_4:-59903920 None:intergenic
CTCACGCTTGTTGATCAGAG+TGG 0.674203 5_4:+59902330 Msa0860820:CDS
TATCGAGCGCGAGATCGTTG+GGG 0.681767 5_4:-59902082 None:intergenic
TGGCACGGATATGGACACAC+AGG 0.686971 5_4:+59904094 Msa0860820:CDS
CGCCCACTGATACCCTCCGA+CGG 0.690240 5_4:-59902202 None:intergenic
GGGTGATAGTTGCAGTACAG+GGG 0.705570 5_4:+59905979 Msa0860820:CDS
TGAAATATAAGGGTAGCATG+TGG 0.707701 5_4:+59902415 Msa0860820:CDS
TCCCGATGGGAAGAATCCGG+AGG 0.710801 5_4:+59902236 Msa0860820:CDS
TTGTTGATCAGAGTGGTCAG+GGG 0.711385 5_4:+59902337 Msa0860820:CDS
TTATGTAAATGTCTCCGATG+GGG 0.718417 5_4:+59906262 Msa0860820:three_prime_UTR
AACTTAAACATGAACTAACG+AGG 0.725624 5_4:-59906583 None:intergenic
TGATGCGTTTCCGGTCATGG+CGG 0.738810 5_4:-59902022 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACAATATAAATGATAA+AGG - chr5_4:59903544-59903563 None:intergenic 10.0%
!! GAAAAAGTAAAAAAAAAAAA+TGG - chr5_4:59905044-59905063 None:intergenic 10.0%
!!! TTTCAAATTTTGATTGTTTT+TGG + chr5_4:59902456-59902475 Msa0860820:intron 15.0%
!!! TAAATTATCATTGATTAAAG+TGG + chr5_4:59903608-59903627 Msa0860820:intron 15.0%
!! AAGTAAAAAAAAAAAATGGA+AGG - chr5_4:59905040-59905059 None:intergenic 15.0%
!! GAAAAAGTAAAGAAAATTAA+AGG - chr5_4:59905293-59905312 None:intergenic 15.0%
!!! CAAAATGAATATTTTTTACA+AGG - chr5_4:59906487-59906506 None:intergenic 15.0%
!!! TTTGAATTTGATGTGAATTT+TGG + chr5_4:59902512-59902531 Msa0860820:intron 20.0%
!!! TTGAATTTGATGTGAATTTT+GGG + chr5_4:59902513-59902532 Msa0860820:intron 20.0%
!!! TCTTTTATGAAATAGTCTAA+GGG - chr5_4:59902918-59902937 None:intergenic 20.0%
!! GTATACCAAATATAACTTTA+TGG + chr5_4:59903178-59903197 Msa0860820:intron 20.0%
!! ATTCTCCATAAAGTTATATT+TGG - chr5_4:59903186-59903205 None:intergenic 20.0%
!!! TAAATGATAAAGGCATATTT+TGG - chr5_4:59903534-59903553 None:intergenic 20.0%
!!! GTTTTAAAAATTTGTGAAAG+AGG + chr5_4:59903585-59903604 Msa0860820:intron 20.0%
!! AAAAATTTAGATCGAAATTC+TGG - chr5_4:59904071-59904090 None:intergenic 20.0%
!!! TTTCGATCTAAATTTTTTGA+TGG + chr5_4:59904074-59904093 Msa0860820:CDS 20.0%
!! TGATAAGAAAAGATCTTATT+TGG + chr5_4:59904293-59904312 Msa0860820:intron 20.0%
!!! GATAAGAAAAGATCTTATTT+GGG + chr5_4:59904294-59904313 Msa0860820:intron 20.0%
!!! ATAAGAAAAGATCTTATTTG+GGG + chr5_4:59904295-59904314 Msa0860820:intron 20.0%
!! ATAGTAAATACTAGTAACTA+AGG - chr5_4:59905085-59905104 None:intergenic 20.0%
!!! ACTTTTCTATTTACCAAAAA+TGG + chr5_4:59905124-59905143 Msa0860820:intron 20.0%
!!! AGTAATATTATCTCCATTTT+TGG - chr5_4:59905140-59905159 None:intergenic 20.0%
!! ATCATTTGTATTCACTATTA+AGG - chr5_4:59905632-59905651 None:intergenic 20.0%
!!! TCTAAAATTTCAACACAAAA+GGG - chr5_4:59905719-59905738 None:intergenic 20.0%
!!! ATCTAAAATTTCAACACAAA+AGG - chr5_4:59905720-59905739 None:intergenic 20.0%
!!! TGTGTTGAAATTTTAGATAT+AGG + chr5_4:59905722-59905741 Msa0860820:intron 20.0%
!!! TTGAAATTTTAGATATAGGT+TGG + chr5_4:59905726-59905745 Msa0860820:intron 20.0%
!! TAATAATGCATGATTAAACA+TGG - chr5_4:59905782-59905801 None:intergenic 20.0%
!!! TCATGCATTATTAAAACTTT+TGG + chr5_4:59905789-59905808 Msa0860820:intron 20.0%
!!! AAACATTAACACTTTTTATG+AGG - chr5_4:59906540-59906559 None:intergenic 20.0%
!!! ATAAAAAGTGTTAATGTTTC+TGG + chr5_4:59906541-59906560 Msa0860820:three_prime_UTR 20.0%
!!! GATTTTGAATTTGATTTTGG+GGG - chr5_4:59901989-59902008 None:intergenic 25.0%
!!! GGATTTTGAATTTGATTTTG+GGG - chr5_4:59901990-59902009 None:intergenic 25.0%
!!! GGGATTTTGAATTTGATTTT+GGG - chr5_4:59901991-59902010 None:intergenic 25.0%
!!! AGGGATTTTGAATTTGATTT+TGG - chr5_4:59901992-59902011 None:intergenic 25.0%
! TCCTTATACCTTGAAATATA+AGG + chr5_4:59902404-59902423 Msa0860820:CDS 25.0%
! CCTTATACCTTGAAATATAA+GGG + chr5_4:59902405-59902424 Msa0860820:CDS 25.0%
!!! TTTAATGTTGATGATAGTCT+GGG + chr5_4:59902479-59902498 Msa0860820:intron 25.0%
!! TGAATTTGATGTGAATTTTG+GGG + chr5_4:59902514-59902533 Msa0860820:intron 25.0%
! TAATCTATAGTTTCTCTTAC+AGG - chr5_4:59902806-59902825 None:intergenic 25.0%
! GAAACTATAGATTAATGAGT+AGG + chr5_4:59902812-59902831 Msa0860820:intron 25.0%
!! CTCTTTTATGAAATAGTCTA+AGG - chr5_4:59902919-59902938 None:intergenic 25.0%
!! GATAAACCACATTCTTTTAA+AGG + chr5_4:59902938-59902957 Msa0860820:intron 25.0%
!! ATTACTCCTTTAAAAGAATG+TGG + chr5_4:59903056-59903075 Msa0860820:intron 25.0%
!! GATAAACCACATTCTTTTAA+AGG - chr5_4:59902938-59902957 None:intergenic 25.0%
!!! ATGTGGTTTATCTCTTTTTT+TGG + chr5_4:59903073-59903092 Msa0860820:intron 25.0%
!! ATTCACCTATGTAATGTTTT+TGG - chr5_4:59903132-59903151 None:intergenic 25.0%
! ACACCATAGATATAAAGTTA+GGG - chr5_4:59903377-59903396 None:intergenic 25.0%
! TACACCATAGATATAAAGTT+AGG - chr5_4:59903378-59903397 None:intergenic 25.0%
! TATAACCATATGATACATGA+AGG + chr5_4:59903413-59903432 Msa0860820:intron 25.0%
!!! TCTTGTTCATTTGTTTTTGT+AGG + chr5_4:59903787-59903806 Msa0860820:intron 25.0%
!!! CTTGTTCATTTGTTTTTGTA+GGG + chr5_4:59903788-59903807 Msa0860820:intron 25.0%
!!! TTGTTCATTTGTTTTTGTAG+GGG + chr5_4:59903789-59903808 Msa0860820:intron 25.0%
!!! ATCTAAATTTTTTGATGGCA+CGG + chr5_4:59904079-59904098 Msa0860820:CDS 25.0%
!!! TTTAGAACCAAAGGTTTTTA+AGG + chr5_4:59904133-59904152 Msa0860820:CDS 25.0%
!! GTTTTTACCTTAAAAACCTT+TGG - chr5_4:59904143-59904162 None:intergenic 25.0%
! ATGAAAAGAAGATGGTAAAA+GGG - chr5_4:59904191-59904210 None:intergenic 25.0%
!! TAAGAAAAGATCTTATTTGG+GGG + chr5_4:59904296-59904315 Msa0860820:intron 25.0%
!!! GATTTTGAGAAGCAAATTTT+AGG - chr5_4:59904623-59904642 None:intergenic 25.0%
! AAAACAAGTGATTAGTAAGT+AGG - chr5_4:59904657-59904676 None:intergenic 25.0%
! CAAAAACTAGAAGAGAAAAA+CGG - chr5_4:59905216-59905235 None:intergenic 25.0%
! CTAAATGTTTCAAAATGCAA+AGG - chr5_4:59905426-59905445 None:intergenic 25.0%
! GAAAGAAAATAACAAGAGAA+GGG - chr5_4:59905469-59905488 None:intergenic 25.0%
! ATCAATAAAAAAGAAAGTGG+TGG - chr5_4:59905491-59905510 None:intergenic 25.0%
! GCAATCAATAAAAAAGAAAG+TGG - chr5_4:59905494-59905513 None:intergenic 25.0%
!!! AATTTTAGATATAGGTTGGT+TGG + chr5_4:59905730-59905749 Msa0860820:intron 25.0%
!! ATCTCTGATTCTTTTGTAAA+TGG + chr5_4:59906100-59906119 Msa0860820:three_prime_UTR 25.0%
!! AAGTGATAATGTTGAAAGAA+TGG + chr5_4:59906134-59906153 Msa0860820:three_prime_UTR 25.0%
!! AGTGATAATGTTGAAAGAAT+GGG + chr5_4:59906135-59906154 Msa0860820:three_prime_UTR 25.0%
! AAACATTAGTGTTTGAACAA+AGG - chr5_4:59906432-59906451 None:intergenic 25.0%
!! TAGTTCATGTTTAAGTTAGA+AGG + chr5_4:59906589-59906608 Msa0860820:three_prime_UTR 25.0%
! TCTTTCAACACATAAATACT+TGG - chr5_4:59906624-59906643 None:intergenic 25.0%
! AGTATTTATGTGTTGAAAGA+TGG + chr5_4:59906624-59906643 Msa0860820:three_prime_UTR 25.0%
CCCTTATATTTCAAGGTATA+AGG - chr5_4:59902408-59902427 None:intergenic 30.0%
!! GTTTAATGTTGATGATAGTC+TGG + chr5_4:59902478-59902497 Msa0860820:intron 30.0%
CGAAAATAAGTTAAGCGTAA+CGG + chr5_4:59902570-59902589 Msa0860820:intron 30.0%
! ATTTAAAGCATTAGAGAGAG+AGG + chr5_4:59902631-59902650 Msa0860820:intron 30.0%
! TTTAAAGCATTAGAGAGAGA+GGG + chr5_4:59902632-59902651 Msa0860820:intron 30.0%
! TCTTCTCCTTTAAAAGAATG+TGG - chr5_4:59902947-59902966 None:intergenic 30.0%
!!! GAGCAGTTTAGTTTTTTTAG+AGG + chr5_4:59902985-59903004 Msa0860820:intron 30.0%
GCTTACCAAAAACATTACAT+AGG + chr5_4:59903124-59903143 Msa0860820:intron 30.0%
CATTACATAGGTGAATTAGA+AGG + chr5_4:59903136-59903155 Msa0860820:intron 30.0%
AGACCCTAACTTTATATCTA+TGG + chr5_4:59903371-59903390 Msa0860820:intron 30.0%
!!! TTCCTGTGAATTTTAGTTAC+TGG + chr5_4:59903469-59903488 Msa0860820:intron 30.0%
ATCCAGTAACTAAAATTCAC+AGG - chr5_4:59903474-59903493 None:intergenic 30.0%
!! TTATTTTACATCTGTCTCTG+AGG + chr5_4:59903640-59903659 Msa0860820:intron 30.0%
! TATTTTACATCTGTCTCTGA+GGG + chr5_4:59903641-59903660 Msa0860820:intron 30.0%
ACATTTGCAAACTCAAAGAA+CGG - chr5_4:59903677-59903696 None:intergenic 30.0%
!! TTTTCAAGCAATCATTCTTG+AGG - chr5_4:59903860-59903879 None:intergenic 30.0%
TTGAAAATCAACTGTACAGT+TGG + chr5_4:59903873-59903892 Msa0860820:CDS 30.0%
!!! TTCAGATGTTACTTTTGATG+TGG + chr5_4:59903998-59904017 Msa0860820:CDS 30.0%
CATGAAAAGAAGATGGTAAA+AGG - chr5_4:59904192-59904211 None:intergenic 30.0%
! CTTTTACCATCTTCTTTTCA+TGG + chr5_4:59904190-59904209 Msa0860820:intron 30.0%
GTAAAAGTAAACGGAAAATC+AGG - chr5_4:59904347-59904366 None:intergenic 30.0%
!! GATTTTCCGTTTACTTTTAC+AGG + chr5_4:59904347-59904366 Msa0860820:intron 30.0%
! ATCTAGTGATTTTCCAGTTT+CGG + chr5_4:59904434-59904453 Msa0860820:CDS 30.0%
TGATTAGTAAGTAGGTATAC+CGG - chr5_4:59904649-59904668 None:intergenic 30.0%
!!! ACTAATCACTTGTTTTTGTC+TGG + chr5_4:59904661-59904680 Msa0860820:intron 30.0%
! TTTCAGTAACAAGTGTTGTA+AGG - chr5_4:59904735-59904754 None:intergenic 30.0%
ACGTTCCTAAAACATTAAGA+TGG + chr5_4:59904887-59904906 Msa0860820:intron 30.0%
! GAACATTTGAAACACATGAA+GGG - chr5_4:59904939-59904958 None:intergenic 30.0%
! AGAACATTTGAAACACATGA+AGG - chr5_4:59904940-59904959 None:intergenic 30.0%
AAAATCATGTTACACATTGC+AGG - chr5_4:59905318-59905337 None:intergenic 30.0%
! TGCAATGTGTAACATGATTT+TGG + chr5_4:59905317-59905336 Msa0860820:intron 30.0%
AATGTTTCAAAATGCAAAGG+AGG - chr5_4:59905423-59905442 None:intergenic 30.0%
GGAAAGAAAATAACAAGAGA+AGG - chr5_4:59905470-59905489 None:intergenic 30.0%
AAAGTCCAAATTATCGAGAA+CGG - chr5_4:59905521-59905540 None:intergenic 30.0%
TTGTACATTGACATTCAATG+AGG + chr5_4:59905653-59905672 Msa0860820:intron 30.0%
! TAAACATGGATTTAGAACAG+AGG - chr5_4:59905768-59905787 None:intergenic 30.0%
ATAAGATGGTTCTTATGGTT+TGG + chr5_4:59905857-59905876 Msa0860820:intron 30.0%
! GTGATAATGTTGAAAGAATG+GGG + chr5_4:59906136-59906155 Msa0860820:three_prime_UTR 30.0%
CTATTGAAACATAGAGAAGT+TGG - chr5_4:59906200-59906219 None:intergenic 30.0%
!! GAAAGTGCTTTAGAAAAAGA+AGG + chr5_4:59906219-59906238 Msa0860820:three_prime_UTR 30.0%
GTTTGAACAAAGGATATCAA+GGG - chr5_4:59906422-59906441 None:intergenic 30.0%
TGTTTGAACAAAGGATATCA+AGG - chr5_4:59906423-59906442 None:intergenic 30.0%
ACACTAATGTTTGCAGAATT+AGG + chr5_4:59906440-59906459 Msa0860820:three_prime_UTR 30.0%
CAGAATTAGGTTCAATAGAA+TGG + chr5_4:59906453-59906472 Msa0860820:three_prime_UTR 30.0%
!! AAAGTGTTAATGTTTCTGGA+TGG + chr5_4:59906545-59906564 Msa0860820:three_prime_UTR 30.0%
AACTTAAACATGAACTAACG+AGG - chr5_4:59906586-59906605 None:intergenic 30.0%
! TTTTGTGAAGGGTAGAATTG+GGG - chr5_4:59901966-59901985 None:intergenic 35.0%
! GTTTTGTGAAGGGTAGAATT+GGG - chr5_4:59901967-59901986 None:intergenic 35.0%
TCATGGCGGTTGTTTATTTA+GGG - chr5_4:59902011-59902030 None:intergenic 35.0%
GGATAATTCTGCGTATGTTT+CGG + chr5_4:59902257-59902276 Msa0860820:CDS 35.0%
TTTCAAGAGAGCGATCAAAA+TGG - chr5_4:59902380-59902399 None:intergenic 35.0%
CATGCTACCCTTATATTTCA+AGG - chr5_4:59902415-59902434 None:intergenic 35.0%
TGAAATATAAGGGTAGCATG+TGG + chr5_4:59902415-59902434 Msa0860820:CDS 35.0%
!! CGCTTAACTTATTTTCGTGT+TGG - chr5_4:59902567-59902586 None:intergenic 35.0%
AACACCTATCGTAGAAAAGA+CGG + chr5_4:59902667-59902686 Msa0860820:intron 35.0%
AGACGGTGAAAACTATGTTT+AGG + chr5_4:59902684-59902703 Msa0860820:intron 35.0%
! GTTTCTCTTACAGGTTTTCT+AGG - chr5_4:59902797-59902816 None:intergenic 35.0%
TTGTTTAACCATTGCCTTGA+GGG - chr5_4:59903220-59903239 None:intergenic 35.0%
ATTGTTTAACCATTGCCTTG+AGG - chr5_4:59903221-59903240 None:intergenic 35.0%
ATTCCTTAACCATTTCCTTG+AGG + chr5_4:59903335-59903354 Msa0860820:intron 35.0%
TTCCTTAACCATTTCCTTGA+GGG + chr5_4:59903336-59903355 Msa0860820:intron 35.0%
TGAAGCCTTCATGTATCATA+TGG - chr5_4:59903421-59903440 None:intergenic 35.0%
ATGATACATGAAGGCTTCAT+TGG + chr5_4:59903422-59903441 Msa0860820:intron 35.0%
! ATTTTACATCTGTCTCTGAG+GGG + chr5_4:59903642-59903661 Msa0860820:intron 35.0%
!!! GTTACAAGCGTTTTTTCAGA+CGG + chr5_4:59903811-59903830 Msa0860820:CDS 35.0%
CATGAATAGAGTTAAGCTGT+GGG - chr5_4:59903923-59903942 None:intergenic 35.0%
ACATGAATAGAGTTAAGCTG+TGG - chr5_4:59903924-59903943 None:intergenic 35.0%
GCACTATTGGAGAATAATGA+AGG + chr5_4:59903975-59903994 Msa0860820:CDS 35.0%
!!! ATGTTACTTTTGATGTGGCT+GGG + chr5_4:59904003-59904022 Msa0860820:CDS 35.0%
!!! ATTTTTTGATGGCACGGATA+TGG + chr5_4:59904085-59904104 Msa0860820:CDS 35.0%
! TGTGACAGATTTAGAACCAA+AGG + chr5_4:59904124-59904143 Msa0860820:CDS 35.0%
ACACTACCATGAAAAGAAGA+TGG - chr5_4:59904199-59904218 None:intergenic 35.0%
! TTTCATGGTAGTGTTAAGCA+CGG + chr5_4:59904205-59904224 Msa0860820:intron 35.0%
TCTGTAGATAAAATGCAGCA+TGG - chr5_4:59904373-59904392 None:intergenic 35.0%
TTTGCTTCTCAAAATCTAGC+CGG + chr5_4:59904627-59904646 Msa0860820:CDS 35.0%
!!! TTGTTTTTGTCTGGTTTGCA+TGG + chr5_4:59904670-59904689 Msa0860820:intron 35.0%
!! TGTTTTTGTCTGGTTTGCAT+GGG + chr5_4:59904671-59904690 Msa0860820:intron 35.0%
! CAACTTTGTTTAACTAGCAG+AGG - chr5_4:59904800-59904819 None:intergenic 35.0%
! AGCTGCCATCTTAATGTTTT+AGG - chr5_4:59904895-59904914 None:intergenic 35.0%
AGCATTTCACATGATTAGAG+TGG - chr5_4:59904994-59905013 None:intergenic 35.0%
CTAATCATGTGAAATGCTGT+TGG + chr5_4:59904996-59905015 Msa0860820:intron 35.0%
! ACTAAGGTCTTTTACATAGC+AGG - chr5_4:59905069-59905088 None:intergenic 35.0%
AAGAGAAAAACGGACACATT+TGG - chr5_4:59905206-59905225 None:intergenic 35.0%
AACATTTCACGTGATTAGAG+TGG - chr5_4:59905246-59905265 None:intergenic 35.0%
GAAAATAACAAGAGAAGGGA+AGG - chr5_4:59905465-59905484 None:intergenic 35.0%
! CTTTTCCGTTCTCGATAATT+TGG + chr5_4:59905513-59905532 Msa0860820:intron 35.0%
TAGAACAGAGGATCAAAAGA+TGG - chr5_4:59905756-59905775 None:intergenic 35.0%
TATCCACATGCTTGATAAGA+TGG + chr5_4:59905843-59905862 Msa0860820:intron 35.0%
GCTTGATAAGATGGTTCTTA+TGG + chr5_4:59905852-59905871 Msa0860820:intron 35.0%
AATGTTGAAAGAATGGGGAT+AGG + chr5_4:59906141-59906160 Msa0860820:three_prime_UTR 35.0%
ATAGGAAAAGGCAAAAGAGA+AGG + chr5_4:59906159-59906178 Msa0860820:three_prime_UTR 35.0%
GTTATGTAAATGTCTCCGAT+GGG + chr5_4:59906261-59906280 Msa0860820:three_prime_UTR 35.0%
TTATGTAAATGTCTCCGATG+GGG + chr5_4:59906262-59906281 Msa0860820:three_prime_UTR 35.0%
! GCTCTTCTGCAATATACTTT+TGG + chr5_4:59906322-59906341 Msa0860820:three_prime_UTR 35.0%
!! TCTGCAATATACTTTTGGAG+AGG + chr5_4:59906327-59906346 Msa0860820:three_prime_UTR 35.0%
! TTCAAAAGTATGGATGGACT+TGG - chr5_4:59906355-59906374 None:intergenic 35.0%
! ATCCAGTTCAAAAGTATGGA+TGG - chr5_4:59906361-59906380 None:intergenic 35.0%
TGACATCCAGTTCAAAAGTA+TGG - chr5_4:59906365-59906384 None:intergenic 35.0%
!!! GAATTGGGGAAGAAGTGTTT+TGG - chr5_4:59901952-59901971 None:intergenic 40.0%
!! GGTTTTGTGAAGGGTAGAAT+TGG - chr5_4:59901968-59901987 None:intergenic 40.0%
!! GATTTTGGGGGTTTTGTGAA+GGG - chr5_4:59901977-59901996 None:intergenic 40.0%
!! TGATTTTGGGGGTTTTGTGA+AGG - chr5_4:59901978-59901997 None:intergenic 40.0%
GTCATGGCGGTTGTTTATTT+AGG - chr5_4:59902012-59902031 None:intergenic 40.0%
AAATAAACAACCGCCATGAC+CGG + chr5_4:59902012-59902031 Msa0860820:exon 40.0%
TCGATAACGCAAACGGTTAA+CGG + chr5_4:59902099-59902118 Msa0860820:CDS 40.0%
TCGCACAAATTCTTGATCCA+AGG + chr5_4:59902123-59902142 Msa0860820:CDS 40.0%
CGCACAAATTCTTGATCCAA+GGG + chr5_4:59902124-59902143 Msa0860820:CDS 40.0%
ACATACGCAGAATTATCCTC+CGG - chr5_4:59902255-59902274 None:intergenic 40.0%
TTTGATCGCTCTCTTGAAAG+TGG + chr5_4:59902381-59902400 Msa0860820:CDS 40.0%
ATATAAGGGTAGCATGTGGT+AGG + chr5_4:59902419-59902438 Msa0860820:intron 40.0%
TATAAGGGTAGCATGTGGTA+GGG + chr5_4:59902420-59902439 Msa0860820:intron 40.0%
! TTCACCGTCTTTTCTACGAT+AGG - chr5_4:59902674-59902693 None:intergenic 40.0%
CGGTGAAAACTATGTTTAGG+CGG + chr5_4:59902687-59902706 Msa0860820:intron 40.0%
GAGGAAAGTCAAAACACTAG+AGG + chr5_4:59902767-59902786 Msa0860820:intron 40.0%
AATGCTAAACAATGCCCTCA+AGG + chr5_4:59903203-59903222 Msa0860820:intron 40.0%
TTAGTCTATGCAGTTGTGTG+TGG + chr5_4:59903493-59903512 Msa0860820:intron 40.0%
TAGTCTATGCAGTTGTGTGT+GGG + chr5_4:59903494-59903513 Msa0860820:intron 40.0%
CATGTTCCAGAATCTGACAT+TGG + chr5_4:59903939-59903958 Msa0860820:CDS 40.0%
TGTGATCCAATGTCAGATTC+TGG - chr5_4:59903948-59903967 None:intergenic 40.0%
TCTGACATTGGATCACACTT+TGG + chr5_4:59903951-59903970 Msa0860820:CDS 40.0%
! ATCACACTTTGGTGCACTAT+TGG + chr5_4:59903962-59903981 Msa0860820:CDS 40.0%
!!! GATGTTACTTTTGATGTGGC+TGG + chr5_4:59904002-59904021 Msa0860820:CDS 40.0%
!!! TGTTACTTTTGATGTGGCTG+GGG + chr5_4:59904004-59904023 Msa0860820:CDS 40.0%
GAAGTTTCCTGGTCATAAGT+TGG + chr5_4:59904028-59904047 Msa0860820:CDS 40.0%
! TCGAAATTCTGGAGATCTAG+CGG - chr5_4:59904060-59904079 None:intergenic 40.0%
GCATGGCCTGTAAAAGTAAA+CGG - chr5_4:59904356-59904375 None:intergenic 40.0%
!! TGTAGCCAACATTTTGACCT+TGG + chr5_4:59904560-59904579 Msa0860820:CDS 40.0%
!! GCAAACAGCTTTTAACTCTG+TGG - chr5_4:59904601-59904620 None:intergenic 40.0%
GTTGTTTGACATACACGAGT+AGG + chr5_4:59904816-59904835 Msa0860820:intron 40.0%
! ATTTGGAACACATGAAGGCT+AGG - chr5_4:59905189-59905208 None:intergenic 40.0%
! GACACATTTGGAACACATGA+AGG - chr5_4:59905194-59905213 None:intergenic 40.0%
ATATAGTCAACCCTGCTTAG+TGG + chr5_4:59905367-59905386 Msa0860820:intron 40.0%
TATAGTCAACCCTGCTTAGT+GGG + chr5_4:59905368-59905387 Msa0860820:intron 40.0%
! AAACCTTTTCCCACTAAGCA+GGG - chr5_4:59905380-59905399 None:intergenic 40.0%
! AAAACCTTTTCCCACTAAGC+AGG - chr5_4:59905381-59905400 None:intergenic 40.0%
AATAACAAGAGAAGGGAAGG+AGG - chr5_4:59905462-59905481 None:intergenic 40.0%
AAAAACAGATAGAAACCCGC+AGG - chr5_4:59905696-59905715 None:intergenic 40.0%
GAACCATCTTATCAAGCATG+TGG - chr5_4:59905849-59905868 None:intergenic 40.0%
! CCATGGGCATTTTTCTTTCA+TGG - chr5_4:59905921-59905940 None:intergenic 40.0%
CCATGAAAGAAAAATGCCCA+TGG + chr5_4:59905918-59905937 Msa0860820:CDS 40.0%
GGAAAAATCTCAGAGTGTGT+GGG + chr5_4:59906000-59906019 Msa0860820:CDS 40.0%
TGATATCTGTTGTCTCGCAT+TGG + chr5_4:59906076-59906095 Msa0860820:exon 40.0%
GAAAGAATGGGGATAGGAAA+AGG + chr5_4:59906147-59906166 Msa0860820:three_prime_UTR 40.0%
TGAAACATAGAGAAGTTGGC+AGG - chr5_4:59906196-59906215 None:intergenic 40.0%
GGTTATGTAAATGTCTCCGA+TGG + chr5_4:59906260-59906279 Msa0860820:three_prime_UTR 40.0%
CTAAACAACTTACACCCCAT+CGG - chr5_4:59906279-59906298 None:intergenic 40.0%
! GTCCATCCATACTTTTGAAC+TGG + chr5_4:59906356-59906375 Msa0860820:three_prime_UTR 40.0%
ATATCAAGGGACAATGCAGT+TGG - chr5_4:59906409-59906428 None:intergenic 40.0%
TGTGTTGAAAGATGGCAGAA+TGG + chr5_4:59906632-59906651 Msa0860820:three_prime_UTR 40.0%
CGATCTACTTCTATCCCGAT+GGG + chr5_4:59902223-59902242 Msa0860820:CDS 45.0%
! TGTTTCGGTTTTCATCGCGT+TGG + chr5_4:59902272-59902291 Msa0860820:CDS 45.0%
CTTGTTGATCAGAGTGGTCA+GGG + chr5_4:59902336-59902355 Msa0860820:CDS 45.0%
TTGTTGATCAGAGTGGTCAG+GGG + chr5_4:59902337-59902356 Msa0860820:CDS 45.0%
GTTTAGGCGGTTTAGTCATG+TGG + chr5_4:59902700-59902719 Msa0860820:intron 45.0%
TCATGTGGAGAGAAGACATG+TGG + chr5_4:59902715-59902734 Msa0860820:intron 45.0%
GACATGTGGATTCTGACCTA+AGG + chr5_4:59902729-59902748 Msa0860820:intron 45.0%
CCATCTGATCTACTCTCCTT+AGG - chr5_4:59902748-59902767 None:intergenic 45.0%
CCTAAGGAGAGTAGATCAGA+TGG + chr5_4:59902745-59902764 Msa0860820:intron 45.0%
AAGGAGAGTAGATCAGATGG+AGG + chr5_4:59902748-59902767 Msa0860820:intron 45.0%
AAACAATGCCCTCAAGGCAA+TGG + chr5_4:59903209-59903228 Msa0860820:intron 45.0%
TGCCCTCAAGGAAATGGTTA+AGG - chr5_4:59903341-59903360 None:intergenic 45.0%
AGTCTATGCAGTTGTGTGTG+GGG + chr5_4:59903495-59903514 Msa0860820:intron 45.0%
AGTTGTGTGTGGGGATAACT+TGG + chr5_4:59903504-59903523 Msa0860820:intron 45.0%
TCCTCTGAGTTGTAACCTTG+TGG + chr5_4:59903706-59903725 Msa0860820:intron 45.0%
TCCACAAGGTTACAACTCAG+AGG - chr5_4:59903710-59903729 None:intergenic 45.0%
GAGTTGTAACCTTGTGGACA+AGG + chr5_4:59903712-59903731 Msa0860820:intron 45.0%
ATGCATTGTCCTTGTCCACA+AGG - chr5_4:59903724-59903743 None:intergenic 45.0%
CAACTGTACAGTTGGAGTTG+TGG + chr5_4:59903881-59903900 Msa0860820:CDS 45.0%
!! TCCTGGTCATAAGTTGGTGT+TGG + chr5_4:59904034-59904053 Msa0860820:CDS 45.0%
!! TATTTGGGGGAAGTACTGCT+CGG + chr5_4:59904309-59904328 Msa0860820:intron 45.0%
CAGAGATTCCCTTACAGAAG+AGG + chr5_4:59904389-59904408 Msa0860820:CDS 45.0%
AGATTCCCTTACAGAAGAGG+TGG + chr5_4:59904392-59904411 Msa0860820:CDS 45.0%
CATGTCCACCTCTTCTGTAA+GGG - chr5_4:59904400-59904419 None:intergenic 45.0%
TTAGCTGCAGCAGACAAGTA+TGG + chr5_4:59904477-59904496 Msa0860820:CDS 45.0%
TCTCGTCTTTGCAAGGACAT+TGG + chr5_4:59904528-59904547 Msa0860820:CDS 45.0%
GTCAGCCAAGGTCAAAATGT+TGG - chr5_4:59904568-59904587 None:intergenic 45.0%
TTAACTCTGTGGCATGGCAA+TGG - chr5_4:59904590-59904609 None:intergenic 45.0%
!! CAGCTTTTAACTCTGTGGCA+TGG - chr5_4:59904596-59904615 None:intergenic 45.0%
ATGAGGTCAGACCATTGTAG+AGG + chr5_4:59905670-59905689 Msa0860820:intron 45.0%
AGATCTCTGACTGTAGCCAT+GGG - chr5_4:59905937-59905956 None:intergenic 45.0%
AAGATCTCTGACTGTAGCCA+TGG - chr5_4:59905938-59905957 None:intergenic 45.0%
GAGATCTTGAAGACAGTTGC+TGG + chr5_4:59905950-59905969 Msa0860820:CDS 45.0%
AGGGTGATAGTTGCAGTACA+GGG + chr5_4:59905978-59905997 Msa0860820:CDS 45.0%
GGGAAAAATCTCAGAGTGTG+TGG + chr5_4:59905999-59906018 Msa0860820:CDS 45.0%
GTCACCACCATCTGAAAGTT+GGG - chr5_4:59906026-59906045 None:intergenic 45.0%
TGTCACCACCATCTGAAAGT+TGG - chr5_4:59906027-59906046 None:intergenic 45.0%
! TCAGATGGTGGTGACACAAT+TGG + chr5_4:59906031-59906050 Msa0860820:CDS 45.0%
AGGTAGACTAGATGCTATGC+AGG + chr5_4:59906239-59906258 Msa0860820:three_prime_UTR 45.0%
!! GATGGCAGAATGGATTGTAG+TGG + chr5_4:59906642-59906661 Msa0860820:three_prime_UTR 45.0%
AGATGATGCGTTTCCGGTCA+TGG - chr5_4:59902028-59902047 None:intergenic 50.0%
TGTCGGAGATGATGCGTTTC+CGG - chr5_4:59902034-59902053 None:intergenic 50.0%
GAGATCGTTGGGGAGGATAA+CGG - chr5_4:59902075-59902094 None:intergenic 50.0%
TTATCGAGCGCGAGATCGTT+GGG - chr5_4:59902086-59902105 None:intergenic 50.0%
TACTCGCTCGCAAAGGGAAT+GGG + chr5_4:59902147-59902166 Msa0860820:CDS 50.0%
GCGATCTACTTCTATCCCGA+TGG + chr5_4:59902222-59902241 Msa0860820:CDS 50.0%
CTATCCCGATGGGAAGAATC+CGG + chr5_4:59902233-59902252 Msa0860820:CDS 50.0%
ATCCTCCGGATTCTTCCCAT+CGG - chr5_4:59902241-59902260 None:intergenic 50.0%
! CTCACGCTTGTTGATCAGAG+TGG + chr5_4:59902330-59902349 Msa0860820:CDS 50.0%
! GCTTGTTGATCAGAGTGGTC+AGG + chr5_4:59902335-59902354 Msa0860820:CDS 50.0%
TAGAGAGAGAGGGAGAGAGT+TGG + chr5_4:59902642-59902661 Msa0860820:intron 50.0%
TACTCGCTCGCAAAGGGAAT+GGG - chr5_4:59902147-59902166 None:intergenic 50.0%
!! TAAGGGTACTCGCTCGCAAA+GGG - chr5_4:59902901-59902920 None:intergenic 50.0%
! AACCATTTCCTTGAGGGCAC+TGG + chr5_4:59903342-59903361 Msa0860820:intron 50.0%
AACCAGTGCCCTCAAGGAAA+TGG - chr5_4:59903347-59903366 None:intergenic 50.0%
GCCAACACCAACTTATGACC+AGG - chr5_4:59904038-59904057 None:intergenic 50.0%
! TGGTAGTGTTAAGCACGGCT+AGG + chr5_4:59904210-59904229 Msa0860820:intron 50.0%
!! ATTTGGGGGAAGTACTGCTC+GGG + chr5_4:59904310-59904329 Msa0860820:intron 50.0%
CCATGTCCACCTCTTCTGTA+AGG - chr5_4:59904401-59904420 None:intergenic 50.0%
CCTTACAGAAGAGGTGGACA+TGG + chr5_4:59904398-59904417 Msa0860820:CDS 50.0%
GCTATCAACGTCTCCGAAAC+TGG - chr5_4:59904450-59904469 None:intergenic 50.0%
TGCAGCAGACAAGTATGGCT+TGG + chr5_4:59904482-59904501 Msa0860820:CDS 50.0%
! CAGACAAGTATGGCTTGGAG+AGG + chr5_4:59904487-59904506 Msa0860820:CDS 50.0%
CAACCCTGCTTAGTGGGAAA+AGG + chr5_4:59905374-59905393 Msa0860820:intron 50.0%
AGGGAAGGAGGAGCTTACAT+GGG - chr5_4:59905450-59905469 None:intergenic 50.0%
AAGGGAAGGAGGAGCTTACA+TGG - chr5_4:59905451-59905470 None:intergenic 50.0%
!! GACTTGTTGCAGCTGTCATG+AGG + chr5_4:59905879-59905898 Msa0860820:intron 50.0%
TGTTGCAGCTGTCATGAGGT+CGG + chr5_4:59905883-59905902 Msa0860820:intron 50.0%
! AAGACAGTTGCTGGCTGTGA+GGG + chr5_4:59905959-59905978 Msa0860820:CDS 50.0%
GAGGGTGATAGTTGCAGTAC+AGG + chr5_4:59905977-59905996 Msa0860820:CDS 50.0%
GGGTGATAGTTGCAGTACAG+GGG + chr5_4:59905979-59905998 Msa0860820:CDS 50.0%
! ATGGTGGTGACACAATTGGC+AGG + chr5_4:59906035-59906054 Msa0860820:CDS 50.0%
TGATGCGTTTCCGGTCATGG+CGG - chr5_4:59902025-59902044 None:intergenic 55.0%
TATCGAGCGCGAGATCGTTG+GGG - chr5_4:59902085-59902104 None:intergenic 55.0%
GTTATCGAGCGCGAGATCGT+TGG - chr5_4:59902087-59902106 None:intergenic 55.0%
CTCGCGCTCGATAACGCAAA+CGG + chr5_4:59902092-59902111 Msa0860820:CDS 55.0%
!! CAAGGGTACTCGCTCGCAAA+GGG + chr5_4:59902141-59902160 Msa0860820:CDS 55.0%
GTACTCGCTCGCAAAGGGAA+TGG + chr5_4:59902146-59902165 Msa0860820:CDS 55.0%
CTCGCAAAGGGAATGGGAGT+TGG + chr5_4:59902153-59902172 Msa0860820:CDS 55.0%
! GCGAGCGATGTTTTCACCGT+CGG + chr5_4:59902186-59902205 Msa0860820:CDS 55.0%
! AGCGATGTTTTCACCGTCGG+AGG + chr5_4:59902189-59902208 Msa0860820:CDS 55.0%
! GCGATGTTTTCACCGTCGGA+GGG + chr5_4:59902190-59902209 Msa0860820:CDS 55.0%
TCCTCCGGATTCTTCCCATC+GGG - chr5_4:59902240-59902259 None:intergenic 55.0%
! TTCATCGCGTTGGCGAGTGA+AGG + chr5_4:59902282-59902301 Msa0860820:CDS 55.0%
! GAGTGGTCAGGGGAAGCATA+AGG + chr5_4:59902347-59902366 Msa0860820:CDS 55.0%
ACTCGCTCGCAAAGGGAATG+GGG - chr5_4:59902148-59902167 None:intergenic 55.0%
GTACTCGCTCGCAAAGGGAA+TGG - chr5_4:59902146-59902165 None:intergenic 55.0%
!! CTAAGGGTACTCGCTCGCAA+AGG - chr5_4:59902902-59902921 None:intergenic 55.0%
CTTGCTAACCAGTGCCCTCA+AGG - chr5_4:59903353-59903372 None:intergenic 55.0%
TGGCACGGATATGGACACAC+AGG + chr5_4:59904094-59904113 Msa0860820:CDS 55.0%
GTGCGAGTCTCGTCTTTGCA+AGG + chr5_4:59904521-59904540 Msa0860820:CDS 55.0%
CAGACCATTGTAGAGGCCTG+CGG + chr5_4:59905677-59905696 Msa0860820:intron 55.0%
AGACCATTGTAGAGGCCTGC+GGG + chr5_4:59905678-59905697 Msa0860820:intron 55.0%
AAACCCGCAGGCCTCTACAA+TGG - chr5_4:59905684-59905703 None:intergenic 55.0%
! GAAGACAGTTGCTGGCTGTG+AGG + chr5_4:59905958-59905977 Msa0860820:CDS 55.0%
GTGTGGGCCCAACTTTCAGA+TGG + chr5_4:59906016-59906035 Msa0860820:CDS 55.0%
TGGGCCCAACTTTCAGATGG+TGG + chr5_4:59906019-59906038 Msa0860820:CDS 55.0%
TCCGACACCATCACCGTCAC+CGG + chr5_4:59902047-59902066 Msa0860820:CDS 60.0%
CCTTTGCGAGCGAGTACCCT+TGG - chr5_4:59902899-59902918 None:intergenic 60.0%
!! CCAAGGGTACTCGCTCGCAA+AGG + chr5_4:59902140-59902159 Msa0860820:CDS 60.0%
!! TCACCGTCGGAGGGTATCAG+TGG + chr5_4:59902199-59902218 Msa0860820:CDS 60.0%
!! CACCGTCGGAGGGTATCAGT+GGG + chr5_4:59902200-59902219 Msa0860820:CDS 60.0%
TCCCGATGGGAAGAATCCGG+AGG + chr5_4:59902236-59902255 Msa0860820:CDS 60.0%
! CGCGTTGGCGAGTGAAGGAA+CGG + chr5_4:59902287-59902306 Msa0860820:CDS 60.0%
CTCGCAAAGGGAATGGGGGT+CGG - chr5_4:59902889-59902908 None:intergenic 60.0%
CTCGCTCGCAAAGGGAATGG+GGG - chr5_4:59902149-59902168 None:intergenic 60.0%
GTGGCTGGGGAGAAGTTTCC+TGG + chr5_4:59904017-59904036 Msa0860820:CDS 60.0%
GGCATGGCAATGGTCAGCCA+AGG - chr5_4:59904580-59904599 None:intergenic 60.0%
GCAGCTGTCATGAGGTCGGA+TGG + chr5_4:59905887-59905906 Msa0860820:intron 60.0%
! GCCGGTGACGGTGATGGTGT+CGG - chr5_4:59902051-59902070 None:intergenic 65.0%
!! GAGGATAACGGCGCCGGTGA+CGG - chr5_4:59902063-59902082 None:intergenic 65.0%
! GTTGGGGAGGATAACGGCGC+CGG - chr5_4:59902069-59902088 None:intergenic 65.0%
CGCCCACTGATACCCTCCGA+CGG - chr5_4:59902205-59902224 None:intergenic 65.0%
GGGAATGGGGGTCGGCTACA+TGG - chr5_4:59902881-59902900 None:intergenic 65.0%
!! TGGGGGAAGTACTGCTCGGG+AGG + chr5_4:59904313-59904332 Msa0860820:intron 65.0%
!! AACGGCGCCGGTGACGGTGA+TGG - chr5_4:59902057-59902076 None:intergenic 70.0%
CGAGCGCGAGATCGTTGGGG+AGG - chr5_4:59902082-59902101 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 59901949 59906686 59901949 ID=Msa0860820;Name=Msa0860820
chr5_4 mRNA 59901949 59906686 59901949 ID=Msa0860820-mRNA-1;Parent=Msa0860820;Name=Msa0860820-mRNA-1;_AED=0.06;_eAED=0.06;_QI=78|1|1|1|1|1|4|608|407
chr5_4 exon 59901949 59902436 59901949 ID=Msa0860820-mRNA-1:exon:18452;Parent=Msa0860820-mRNA-1
chr5_4 exon 59903809 59904154 59903809 ID=Msa0860820-mRNA-1:exon:18453;Parent=Msa0860820-mRNA-1
chr5_4 exon 59904369 59904648 59904369 ID=Msa0860820-mRNA-1:exon:18454;Parent=Msa0860820-mRNA-1
chr5_4 exon 59905891 59906686 59905891 ID=Msa0860820-mRNA-1:exon:18455;Parent=Msa0860820-mRNA-1
chr5_4 five_prime_UTR 59901949 59902026 59901949 ID=Msa0860820-mRNA-1:five_prime_utr;Parent=Msa0860820-mRNA-1
chr5_4 CDS 59902027 59902436 59902027 ID=Msa0860820-mRNA-1:cds;Parent=Msa0860820-mRNA-1
chr5_4 CDS 59903809 59904154 59903809 ID=Msa0860820-mRNA-1:cds;Parent=Msa0860820-mRNA-1
chr5_4 CDS 59904369 59904648 59904369 ID=Msa0860820-mRNA-1:cds;Parent=Msa0860820-mRNA-1
chr5_4 CDS 59905891 59906078 59905891 ID=Msa0860820-mRNA-1:cds;Parent=Msa0860820-mRNA-1
chr5_4 three_prime_UTR 59906079 59906686 59906079 ID=Msa0860820-mRNA-1:three_prime_utr;Parent=Msa0860820-mRNA-1
Gene Sequence

>Msa0860820

ATGACCGGAAACGCATCATCTCCGACACCATCACCGTCACCGGCGCCGTTATCCTCCCCAACGATCTCGCGCTCGATAACGCAAACGGTTAACGGTTCGCACAAATTCTTGATCCAAGGGTACTCGCTCGCAAAGGGAATGGGAGTTGGAAAACACATTGCGAGCGATGTTTTCACCGTCGGAGGGTATCAGTGGGCGATCTACTTCTATCCCGATGGGAAGAATCCGGAGGATAATTCTGCGTATGTTTCGGTTTTCATCGCGTTGGCGAGTGAAGGAACGGATGTGAGAGCGCTTTTTGAACTCACGCTTGTTGATCAGAGTGGTCAGGGGAAGCATAAGGTTCATAGCCATTTTGATCGCTCTCTTGAAAGTGGTCCTTATACCTTGAAATATAAGGGTAGCATGTGGGGTTACAAGCGTTTTTTCAGACGGACTTTGCTTGAAAGCTCTGATTTCCTCAAGAATGATTGCTTGAAAATCAACTGTACAGTTGGAGTTGTGGTTTCTGCTGTTGATTGCCCACAGCTTAACTCTATTCATGTTCCAGAATCTGACATTGGATCACACTTTGGTGCACTATTGGAGAATAATGAAGGTTCAGATGTTACTTTTGATGTGGCTGGGGAGAAGTTTCCTGGTCATAAGTTGGTGTTGGCCGCTAGATCTCCAGAATTTCGATCTAAATTTTTTGATGGCACGGATATGGACACACAGGAGATTGTTGTGACAGATTTAGAACCAAAGGTTTTTAAGGCCATGCTGCATTTTATCTACAGAGATTCCCTTACAGAAGAGGTGGACATGGTTTCATCAACAACATCTAGTGATTTTCCAGTTTCGGAGACGTTGATAGCAAAATTGTTAGCTGCAGCAGACAAGTATGGCTTGGAGAGGCTTAGACTGATGTGCGAGTCTCGTCTTTGCAAGGACATTGGTGTGAGTTCTGTAGCCAACATTTTGACCTTGGCTGACCATTGCCATGCCACAGAGTTAAAAGCTGTTTGCCTAAAATTTGCTTCTCAAAATCTAGCCGCTGTCATGAGGTCGGATGGATTCGAGTCCATGAAAGAAAAATGCCCATGGCTACAGTCAGAGATCTTGAAGACAGTTGCTGGCTGTGAGGGTGATAGTTGCAGTACAGGGGAAAAATCTCAGAGTGTGTGGGCCCAACTTTCAGATGGTGGTGACACAATTGGCAGGAGAGTCAGACAGAGACATTGA
Protein sequence

>Msa0860820

MTGNASSPTPSPSPAPLSSPTISRSITQTVNGSHKFLIQGYSLAKGMGVGKHIASDVFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLVDQSGQGKHKVHSHFDRSLESGPYTLKYKGSMWGYKRFFRRTLLESSDFLKNDCLKINCTVGVVVSAVDCPQLNSIHVPESDIGSHFGALLENNEGSDVTFDVAGEKFPGHKLVLAARSPEFRSKFFDGTDMDTQEIVVTDLEPKVFKAMLHFIYRDSLTEEVDMVSSTTSSDFPVSETLIAKLLAAADKYGLERLRLMCESRLCKDIGVSSVANILTLADHCHATELKAVCLKFASQNLAAVMRSDGFESMKEKCPWLQSEILKTVAGCEGDSCSTGEKSQSVWAQLSDGGDTIGRRVRQRH*