Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145060 | XP_003589173.1 | 95.618 | 639 | 9 | 2 | 1 | 639 | 1 | 620 | 0.0 | 1244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145060 | sp|Q7XII4|REM41_ORYSJ | 36.290 | 124 | 78 | 1 | 512 | 634 | 193 | 316 | 9.22e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145060 | G7I3I9 | 95.618 | 639 | 9 | 2 | 1 | 639 | 1 | 620 | 0.0 | 1244 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0145060 | Msa0293040 | 0.814807 | 1.276766e-51 | -8.615850e-47 |
| Msa0145060 | Msa0483910 | 0.846830 | 1.697189e-59 | -8.615850e-47 |
| Msa0145060 | Msa0484570 | 0.811419 | 7.067315e-51 | -8.615850e-47 |
| Msa0145060 | Msa0757100 | 0.801635 | 8.205604e-49 | -8.615850e-47 |
| Msa0145060 | Msa1003740 | 0.821473 | 3.962326e-53 | -8.615850e-47 |
| Msa0145060 | Msa1003800 | 0.844401 | 7.736743e-59 | -8.615850e-47 |
| Msa0145060 | Msa1003930 | 0.820482 | 6.700799e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145060 | MtrunA17_Chr1g0153281 | 95.618 | 639 | 9 | 2 | 1 | 639 | 1 | 620 | 0.0 | 1244 |
| Msa0145060 | MtrunA17_Chr8g0375091 | 40.995 | 422 | 203 | 13 | 249 | 638 | 30 | 437 | 8.15e-73 | 241 |
| Msa0145060 | MtrunA17_Chr5g0402201 | 39.540 | 435 | 195 | 17 | 239 | 638 | 2 | 403 | 2.35e-58 | 201 |
| Msa0145060 | MtrunA17_Chr8g0375241 | 27.467 | 375 | 212 | 9 | 301 | 636 | 148 | 501 | 1.29e-19 | 92.4 |
| Msa0145060 | MtrunA17_Chr8g0345191 | 28.099 | 242 | 143 | 6 | 422 | 636 | 222 | 459 | 2.32e-18 | 88.6 |
| Msa0145060 | MtrunA17_Chr8g0376741 | 25.628 | 398 | 238 | 16 | 281 | 636 | 144 | 525 | 1.62e-15 | 79.7 |
| Msa0145060 | MtrunA17_Chr8g0377061 | 38.235 | 102 | 63 | 0 | 528 | 629 | 247 | 348 | 1.27e-14 | 75.9 |
| Msa0145060 | MtrunA17_Chr8g0349271 | 33.628 | 113 | 74 | 1 | 523 | 634 | 88 | 200 | 3.28e-13 | 68.9 |
| Msa0145060 | MtrunA17_Chr1g0173571 | 33.333 | 117 | 78 | 0 | 518 | 634 | 157 | 273 | 1.41e-11 | 65.5 |
| Msa0145060 | MtrunA17_Chr1g0203401 | 36.170 | 94 | 60 | 0 | 532 | 625 | 106 | 199 | 3.14e-11 | 63.5 |
| Msa0145060 | MtrunA17_Chr7g0257771 | 36.082 | 97 | 62 | 0 | 518 | 614 | 163 | 259 | 6.51e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145060 | AT1G45207.3 | 48.298 | 617 | 220 | 23 | 34 | 639 | 21 | 549 | 5.77e-147 | 437 |
| Msa0145060 | AT1G45207.2 | 47.833 | 623 | 220 | 25 | 34 | 639 | 21 | 555 | 1.06e-142 | 427 |
| Msa0145060 | AT4G36970.1 | 40.515 | 427 | 189 | 16 | 249 | 634 | 12 | 414 | 9.47e-44 | 162 |
| Msa0145060 | AT2G02170.3 | 27.513 | 378 | 206 | 14 | 301 | 639 | 11 | 359 | 3.50e-19 | 90.1 |
| Msa0145060 | AT2G02170.6 | 27.513 | 378 | 206 | 14 | 301 | 639 | 11 | 359 | 3.50e-19 | 90.1 |
| Msa0145060 | AT2G02170.1 | 28.032 | 371 | 213 | 11 | 301 | 639 | 136 | 484 | 5.92e-19 | 90.9 |
| Msa0145060 | AT2G02170.2 | 28.032 | 371 | 213 | 11 | 301 | 639 | 136 | 484 | 5.92e-19 | 90.9 |
| Msa0145060 | AT2G02170.5 | 28.032 | 371 | 213 | 11 | 301 | 639 | 136 | 484 | 5.92e-19 | 90.9 |
| Msa0145060 | AT2G02170.4 | 28.032 | 371 | 213 | 11 | 301 | 639 | 136 | 484 | 5.92e-19 | 90.9 |
| Msa0145060 | AT1G30320.1 | 25.333 | 375 | 206 | 13 | 298 | 639 | 175 | 508 | 2.44e-17 | 85.9 |
| Msa0145060 | AT1G67590.1 | 29.126 | 206 | 122 | 3 | 434 | 629 | 141 | 332 | 3.95e-16 | 80.9 |
| Msa0145060 | AT1G53860.1 | 23.467 | 375 | 197 | 17 | 298 | 637 | 119 | 438 | 2.72e-12 | 69.7 |
| Msa0145060 | AT1G53860.2 | 26.556 | 241 | 138 | 11 | 424 | 636 | 140 | 369 | 2.99e-12 | 69.3 |
| Msa0145060 | AT3G61260.1 | 34.615 | 104 | 67 | 1 | 532 | 634 | 109 | 212 | 3.42e-12 | 66.6 |
| Msa0145060 | AT5G23750.2 | 31.897 | 116 | 75 | 2 | 514 | 625 | 76 | 191 | 5.79e-11 | 62.8 |
| Msa0145060 | AT5G23750.1 | 31.897 | 116 | 75 | 2 | 514 | 625 | 77 | 192 | 8.43e-11 | 62.4 |
| Msa0145060 | AT3G57540.1 | 31.193 | 109 | 75 | 0 | 518 | 626 | 177 | 285 | 9.27e-11 | 63.9 |
Find 202 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTGAGATTTCGGAGTTTA+AGG | 0.138254 | 1_4:+4652505 | None:intergenic |
| TTGTTAACAATGCGTGATTT+AGG | 0.191934 | 1_4:-4652728 | Msa0145060:exon |
| GGAGAACATTGCCGTCTAAA+TGG | 0.212264 | 1_4:-4651532 | Msa0145060:CDS |
| GAGTATCTCTTTCTCTAAAA+TGG | 0.225892 | 1_4:-4650491 | Msa0145060:CDS |
| TTACTATGTTGACACTAAAT+TGG | 0.250137 | 1_4:-4648436 | Msa0145060:three_prime_UTR |
| TTGTTTGTCCCAGGGCTAAA+AGG | 0.256081 | 1_4:-4649816 | Msa0145060:intron |
| AATAATTAAATAAGAGAAAA+TGG | 0.258158 | 1_4:+4652880 | None:intergenic |
| AGAGGCTTATTTCTAAAGTT+TGG | 0.258948 | 1_4:+4648292 | None:intergenic |
| CTTTCTCTAAAATGGATATC+AGG | 0.259197 | 1_4:-4650483 | Msa0145060:CDS |
| AGCTACCCTCTGGGCTCATC+TGG | 0.267123 | 1_4:+4650587 | None:intergenic |
| ACTGAAATTCGCTCAGAAAA+AGG | 0.296875 | 1_4:-4649161 | Msa0145060:CDS |
| GAATAGGGCCTTGTGTTTCT+TGG | 0.297375 | 1_4:+4650420 | None:intergenic |
| CTCACAAGGTTATGTCATTT+CGG | 0.298149 | 1_4:-4649081 | Msa0145060:CDS |
| GAATGCTGTAGAAGCTTAAA+AGG | 0.304020 | 1_4:+4649012 | None:intergenic |
| CATAACCTTGTGAGAAGTTC+TGG | 0.317020 | 1_4:+4649090 | None:intergenic |
| GCATTAACAGCAGCAGAAAA+AGG | 0.324720 | 1_4:+4651317 | None:intergenic |
| TGTTAACAATGCGTGATTTA+GGG | 0.325485 | 1_4:-4652727 | Msa0145060:exon |
| TTACTTTCTCTTCACTCTCT+TGG | 0.327350 | 1_4:-4652813 | Msa0145060:five_prime_UTR |
| GAAGATGAACTTGCAGCATT+TGG | 0.328958 | 1_4:-4652378 | Msa0145060:CDS |
| CTGAACCTCTACCAGTGAAT+AGG | 0.332401 | 1_4:+4650404 | None:intergenic |
| TGCTTCTCTATTTCTTCATC+TGG | 0.337589 | 1_4:-4652786 | Msa0145060:five_prime_UTR |
| CATCGATTCGCATTTGCATT+TGG | 0.338837 | 1_4:+4652752 | None:intergenic |
| GAGTGAAGAGAAAGTAAATA+TGG | 0.338896 | 1_4:+4652819 | None:intergenic |
| CACCATTACCAACTTGCTTC+CGG | 0.341353 | 1_4:+4651579 | None:intergenic |
| GTGAAGTACCAGTGAGATTT+CGG | 0.355827 | 1_4:+4652496 | None:intergenic |
| AATGCTAATGCAACTGGAAC+TGG | 0.368212 | 1_4:-4651794 | Msa0145060:CDS |
| AGAGAAAGAAGTCCTCATAT+TGG | 0.380866 | 1_4:+4650552 | None:intergenic |
| TATGGTTCAGTCTAGGAAAT+CGG | 0.382013 | 1_4:-4651723 | Msa0145060:CDS |
| AATGCAACTGGAACTGGAAC+TGG | 0.387940 | 1_4:-4651788 | Msa0145060:CDS |
| GATGGGTTTACAAATAGTTC+TGG | 0.388906 | 1_4:-4651287 | Msa0145060:CDS |
| GGAGAAGTTTGATGCTTTCA+AGG | 0.390085 | 1_4:-4650659 | Msa0145060:CDS |
| TCGGGAACGGGTACAGCGAC+GGG | 0.392934 | 1_4:-4651704 | Msa0145060:CDS |
| ACTGGAACTGGAACTGGAAC+TGG | 0.401752 | 1_4:-4651782 | Msa0145060:CDS |
| CTGCGTTGTGTTTAAGTAAT+GGG | 0.406242 | 1_4:-4651553 | Msa0145060:CDS |
| GCTGTTAATGCTTCAGCTGA+TGG | 0.411333 | 1_4:-4651305 | Msa0145060:CDS |
| GAGAAAGAAGTCCTCATATT+GGG | 0.411403 | 1_4:+4650553 | None:intergenic |
| CTGAACAATGCTAATGCAAC+TGG | 0.411456 | 1_4:-4651800 | Msa0145060:CDS |
| GCCGCCGGTGACGGTGTTGC+CGG | 0.417061 | 1_4:+4652646 | None:intergenic |
| ACTGGTACATTTCCGAGTCC+TGG | 0.419417 | 1_4:-4651680 | Msa0145060:CDS |
| CTGTGGAACTGAAACCCTTC+CGG | 0.422284 | 1_4:+4651460 | None:intergenic |
| TGAAGACGGAAATCAACTTT+CGG | 0.431117 | 1_4:-4652048 | Msa0145060:CDS |
| CCAGCACTCGATCTTCATCT+TGG | 0.432083 | 1_4:-4650351 | Msa0145060:CDS |
| ACGGGTACAGCGACGGGGAC+TGG | 0.432458 | 1_4:-4651698 | Msa0145060:CDS |
| TTCGGATCCGGATCCGGATC+TGG | 0.432532 | 1_4:+4652311 | None:intergenic |
| CCTTGACAATGACGATAATT+CGG | 0.435234 | 1_4:+4651653 | None:intergenic |
| TTTGCTATTTCAGATGAAGT+TGG | 0.436926 | 1_4:-4649224 | Msa0145060:intron |
| CTGTTAATGCTTCAGCTGAT+GGG | 0.437545 | 1_4:-4651304 | Msa0145060:CDS |
| GCGATCGACGCTGGCGGAAG+CGG | 0.441021 | 1_4:+4652562 | None:intergenic |
| TGGAGCTATGAAGAAGAGTA+TGG | 0.441511 | 1_4:-4651741 | Msa0145060:CDS |
| GGTGGTGTTGCAATGCAAAA+AGG | 0.444448 | 1_4:-4651632 | Msa0145060:CDS |
| TGAACCTCTACCAGTGAATA+GGG | 0.445517 | 1_4:+4650405 | None:intergenic |
| GGTTCTTCGCCTCGATTAGT+TGG | 0.446971 | 1_4:-4651761 | Msa0145060:CDS |
| GAGAACATTGCCGTCTAAAT+GGG | 0.447750 | 1_4:-4651531 | Msa0145060:CDS |
| TGCCTTGTAGCCTCATACTT+GGG | 0.448733 | 1_4:-4648356 | Msa0145060:three_prime_UTR |
| AGAGTGAAGATGACGGAGTC+AGG | 0.453482 | 1_4:+4652611 | None:intergenic |
| TATCAACATCACAGTTCAAA+AGG | 0.454031 | 1_4:-4652090 | Msa0145060:intron |
| TCTGCAAATCTGTGACGGGC+AGG | 0.458281 | 1_4:+4650512 | None:intergenic |
| TGTTTGTCCCAGGGCTAAAA+GGG | 0.458702 | 1_4:-4649815 | Msa0145060:intron |
| TATTCGTTGTATTCGCCTGC+AGG | 0.459546 | 1_4:-4651380 | Msa0145060:CDS |
| CAGCACTCGATCTTCATCTT+GGG | 0.467973 | 1_4:-4650350 | Msa0145060:CDS |
| AAACACAAGGCCCTATTCAC+TGG | 0.468324 | 1_4:-4650415 | Msa0145060:CDS |
| GGCAACACCGTCACCGGCGG+CGG | 0.469465 | 1_4:-4652644 | Msa0145060:CDS |
| GTGCCTTGTAGCCTCATACT+TGG | 0.471702 | 1_4:-4648357 | Msa0145060:three_prime_UTR |
| ACATGGATGCTCTCAGATGC+AGG | 0.472253 | 1_4:-4651201 | Msa0145060:CDS |
| TCTGGTGGCAATGGTGGTGG+AGG | 0.473125 | 1_4:-4651269 | Msa0145060:CDS |
| TTTCGGAGAGCCGGCCAGAT+GGG | 0.473847 | 1_4:-4649064 | Msa0145060:CDS |
| CTTTCTGTTCAAGTGAAGCT+AGG | 0.476381 | 1_4:-4648989 | Msa0145060:intron |
| ACCACCGGCAACACCGTCAC+CGG | 0.481138 | 1_4:-4652650 | Msa0145060:CDS |
| GAGGAGCATGAGCTACCCTC+TGG | 0.483081 | 1_4:+4650577 | None:intergenic |
| ATGAACTTGCAGCATTTGGC+AGG | 0.484576 | 1_4:-4652374 | Msa0145060:CDS |
| CCAAGATGAAGATCGAGTGC+TGG | 0.484979 | 1_4:+4650351 | None:intergenic |
| TTGAACAGAAACTATCAAGT+AGG | 0.485622 | 1_4:+4648253 | None:intergenic |
| TAATTCGGAGTCCCAGGACT+CGG | 0.488135 | 1_4:+4651668 | None:intergenic |
| GGTGTTGCGTGTTCTTGAAC+CGG | 0.491640 | 1_4:+4652670 | None:intergenic |
| AGCGAGTTGCGAGTGGAGGC+CGG | 0.491659 | 1_4:-4651598 | Msa0145060:CDS |
| ATTTCGGAGAGCCGGCCAGA+TGG | 0.493284 | 1_4:-4649065 | Msa0145060:CDS |
| AGTGGTCCACTTGGTCCACC+TGG | 0.493547 | 1_4:-4651413 | Msa0145060:CDS |
| TTAGGCCTCCTCAGTGGCTG+TGG | 0.494524 | 1_4:+4651443 | None:intergenic |
| GGCCAGATGGGTTCTTTGAG+TGG | 0.494804 | 1_4:-4649052 | Msa0145060:CDS |
| ATGGTTCAGTCTAGGAAATC+GGG | 0.495039 | 1_4:-4651722 | Msa0145060:CDS |
| TGAACAGAAACTATCAAGTA+GGG | 0.496028 | 1_4:+4648254 | None:intergenic |
| CAGTCTAGGAAATCGGGAAC+GGG | 0.496577 | 1_4:-4651716 | Msa0145060:CDS |
| GTTTGATGCTTTCAAGGATG+CGG | 0.497959 | 1_4:-4650653 | Msa0145060:CDS |
| CTGGTACATTTCCGAGTCCT+GGG | 0.499365 | 1_4:-4651679 | Msa0145060:CDS |
| AAGCGGAGGAGAAGAGACTA+AGG | 0.501003 | 1_4:+4652579 | None:intergenic |
| TTTGTTCATAATCTTATCCA+TGG | 0.503384 | 1_4:+4649183 | None:intergenic |
| CGCATGGGAAAATTTGCAAA+AGG | 0.505130 | 1_4:-4649776 | Msa0145060:CDS |
| AGTTCTGGTGGCAATGGTGG+TGG | 0.506963 | 1_4:-4651272 | Msa0145060:CDS |
| AAGCTGGAGTGGTCCAGATC+CGG | 0.511012 | 1_4:-4652324 | Msa0145060:CDS |
| TGTATCGCCGCCGCCGGTGA+CGG | 0.511390 | 1_4:+4652637 | None:intergenic |
| AATACGAACTCCCAAGTATG+AGG | 0.512008 | 1_4:+4648346 | None:intergenic |
| AATGGATATCAGGGATGTGC+AGG | 0.513273 | 1_4:-4650473 | Msa0145060:CDS |
| CTCCCAAGTATGAGGCTACA+AGG | 0.514222 | 1_4:+4648354 | None:intergenic |
| GGCCGGAAGCAAGTTGGTAA+TGG | 0.516473 | 1_4:-4651581 | Msa0145060:CDS |
| GTTCAGAAAATGTTGACAGC+TGG | 0.516670 | 1_4:-4650387 | Msa0145060:CDS |
| ACAAATAGTTCTGGTGGCAA+TGG | 0.516869 | 1_4:-4651278 | Msa0145060:CDS |
| AACCACTCAAAGAACCCATC+TGG | 0.516973 | 1_4:+4649050 | None:intergenic |
| GTTATGTCATTTCGGAGAGC+CGG | 0.517925 | 1_4:-4649073 | Msa0145060:CDS |
| TTTCTCTAAAATGGATATCA+GGG | 0.518025 | 1_4:-4650482 | Msa0145060:CDS |
| GCTCGCTCAGTTAGTGTACA+TGG | 0.518862 | 1_4:-4651218 | Msa0145060:CDS |
| TGACGATAATTCGGAGTCCC+AGG | 0.519900 | 1_4:+4651662 | None:intergenic |
| GAAGGAGCAGCGATCGACGC+TGG | 0.522577 | 1_4:+4652553 | None:intergenic |
| TTCTGGTAACTTGATGAGCC+TGG | 0.526347 | 1_4:+4649107 | None:intergenic |
| GAGTGGTCCAGATCCGGATC+CGG | 0.526471 | 1_4:-4652318 | Msa0145060:CDS |
| AATAATGTATGTATGTACTT+AGG | 0.527429 | 1_4:-4648315 | Msa0145060:three_prime_UTR |
| CATGCTCCTCTCCCAATATG+AGG | 0.528342 | 1_4:-4650564 | Msa0145060:CDS |
| ACCAGGTTTCAGAAATCAGA+AGG | 0.529199 | 1_4:-4648507 | Msa0145060:intron |
| TTTGATGCTTTCAAGGATGC+GGG | 0.530327 | 1_4:-4650652 | Msa0145060:CDS |
| ATCGACGCTGGCGGAAGCGG+AGG | 0.530992 | 1_4:+4652565 | None:intergenic |
| GCTACCCTCTGGGCTCATCT+GGG | 0.532927 | 1_4:+4650588 | None:intergenic |
| ATCGGGAACGGGTACAGCGA+CGG | 0.534846 | 1_4:-4651705 | Msa0145060:CDS |
| TCCGCATCTTCCCATTTAGA+CGG | 0.538501 | 1_4:+4651521 | None:intergenic |
| AGTGGACCACTCTTCGACTT+AGG | 0.540735 | 1_4:+4651425 | None:intergenic |
| CTTAAACTCCGAAATCTCAC+TGG | 0.541173 | 1_4:-4652504 | Msa0145060:intron |
| GACGGGCAGGGTAGGTGGAG+TGG | 0.544339 | 1_4:+4650525 | None:intergenic |
| TTGTTCAGATCTAACGAAGC+AGG | 0.544462 | 1_4:+4651815 | None:intergenic |
| TATCTCCTACTGTTTCAAGA+AGG | 0.545055 | 1_4:-4650621 | Msa0145060:CDS |
| TTGCAGCATTTGGCAGGTCA+CGG | 0.547364 | 1_4:-4652368 | Msa0145060:CDS |
| CTAGCTTCACTTGAACAGAA+AGG | 0.549094 | 1_4:+4648990 | None:intergenic |
| TCTGTGACGGGCAGGGTAGG+TGG | 0.549788 | 1_4:+4650520 | None:intergenic |
| TTTCTTGGACCACCTTGTCA+TGG | 0.550513 | 1_4:+4650435 | None:intergenic |
| AGGACTTGTATCGCCGCCGC+CGG | 0.558148 | 1_4:+4652631 | None:intergenic |
| AGAAGCTTAAAAGGCATGAC+AGG | 0.558480 | 1_4:+4649021 | None:intergenic |
| CTGCAAATCTGTGACGGGCA+GGG | 0.563804 | 1_4:+4650513 | None:intergenic |
| ATACTCTGCAAATCTGTGAC+GGG | 0.564896 | 1_4:+4650508 | None:intergenic |
| ACTGCGTTGTGTTTAAGTAA+TGG | 0.567379 | 1_4:-4651554 | Msa0145060:CDS |
| CACACGAACGGATCCTTGCA+TGG | 0.568343 | 1_4:-4651240 | Msa0145060:CDS |
| GAGTTCAGTTTCAGTCGACC+AGG | 0.570124 | 1_4:-4649125 | Msa0145060:CDS |
| AGAAGTCCTCATATTGGGAG+AGG | 0.571056 | 1_4:+4650558 | None:intergenic |
| TCAGTCTAGGAAATCGGGAA+CGG | 0.572024 | 1_4:-4651717 | Msa0145060:CDS |
| AAAGAAGCGAGCATCTTCCA+TGG | 0.572035 | 1_4:-4649200 | Msa0145060:CDS |
| GAAGAGAAAGTAAATATGGC+GGG | 0.573275 | 1_4:+4652823 | None:intergenic |
| AGTGACATTGATTCTGAAGA+CGG | 0.574323 | 1_4:-4652062 | Msa0145060:CDS |
| ACAAGGCACTTAGATTCTAC+CGG | 0.575457 | 1_4:+4648371 | None:intergenic |
| TGAAACAGTAGGAGATACAT+TGG | 0.575489 | 1_4:+4650627 | None:intergenic |
| AGAAGAGTATGGTTCAGTCT+AGG | 0.576799 | 1_4:-4651730 | Msa0145060:CDS |
| GTCGTGAGCATCGGAAGCGA+AGG | 0.577090 | 1_4:+4652535 | None:intergenic |
| GGACCACTCCAGCTTTCACT+CGG | 0.578133 | 1_4:+4652332 | None:intergenic |
| ACCGGCAACACCGTCACCGG+CGG | 0.579109 | 1_4:-4652647 | Msa0145060:CDS |
| GGAGTCGCGGTCGTGAGCAT+CGG | 0.579540 | 1_4:+4652526 | None:intergenic |
| CATGCAAGGATCCGTTCGTG+TGG | 0.580587 | 1_4:+4651241 | None:intergenic |
| GGATTGAAGAATGTCAAGAT+CGG | 0.582518 | 1_4:-4651883 | Msa0145060:intron |
| TACTGTTTCAAGAAGGGACA+TGG | 0.583683 | 1_4:-4650614 | Msa0145060:CDS |
| TGAAGTACAAGCACTTTAGC+CGG | 0.588600 | 1_4:-4648390 | Msa0145060:three_prime_UTR |
| AAATCTGTGACGGGCAGGGT+AGG | 0.589058 | 1_4:+4650517 | None:intergenic |
| AAGGATCCGTTCGTGTGGGA+AGG | 0.589367 | 1_4:+4651246 | None:intergenic |
| TTCACGAACAACGACGCTCG+TGG | 0.590666 | 1_4:-4652703 | Msa0145060:CDS |
| ATCTCCTACTGTTTCAAGAA+GGG | 0.591612 | 1_4:-4650620 | Msa0145060:CDS |
| TGAAGAGAAAGTAAATATGG+CGG | 0.592867 | 1_4:+4652822 | None:intergenic |
| GATACTCTGCAAATCTGTGA+CGG | 0.592988 | 1_4:+4650507 | None:intergenic |
| AGTTCTGAGCGAGTTGCGAG+TGG | 0.593872 | 1_4:-4651605 | Msa0145060:CDS |
| AGGAGCATGAGCTACCCTCT+GGG | 0.594386 | 1_4:+4650578 | None:intergenic |
| AGGAAGCCAAAATCACCGCA+TGG | 0.595215 | 1_4:-4649792 | Msa0145060:CDS |
| ATGTCCCTTCTTGAAACAGT+AGG | 0.598639 | 1_4:+4650616 | None:intergenic |
| GCTCCGAGTGAAAGCTGGAG+TGG | 0.598646 | 1_4:-4652335 | Msa0145060:CDS |
| CCGAATTATCGTCATTGTCA+AGG | 0.599293 | 1_4:-4651653 | Msa0145060:CDS |
| GCCGTCTAAATGGGAAGATG+CGG | 0.600400 | 1_4:-4651522 | Msa0145060:CDS |
| AAGGCCCTATTCACTGGTAG+AGG | 0.600698 | 1_4:-4650409 | Msa0145060:CDS |
| GGGTTTACAAATAGTTCTGG+TGG | 0.601682 | 1_4:-4651284 | Msa0145060:CDS |
| CGCTCGTGGAGGCGTAACAC+CGG | 0.602071 | 1_4:-4652689 | Msa0145060:CDS |
| GGAAGCCAAAATCACCGCAT+GGG | 0.605836 | 1_4:-4649791 | Msa0145060:CDS |
| AATGGGAAGATGCGGAAAGG+TGG | 0.606632 | 1_4:-4651514 | Msa0145060:CDS |
| AGTGGAGGCCGGAAGCAAGT+TGG | 0.609512 | 1_4:-4651587 | Msa0145060:CDS |
| GCAACCCAGATGAGCCCAGA+GGG | 0.612368 | 1_4:-4650592 | Msa0145060:CDS |
| TGGAGGCCTTCCCACACGAA+CGG | 0.615766 | 1_4:-4651252 | Msa0145060:CDS |
| AACGAATAATACGCAACACC+AGG | 0.618153 | 1_4:+4651395 | None:intergenic |
| TTCATAGCTCCAACTAATCG+AGG | 0.618206 | 1_4:+4651752 | None:intergenic |
| CTAACTGAGCGAGCCATGCA+AGG | 0.618650 | 1_4:+4651227 | None:intergenic |
| TCTTTCTCTCTAGCACTCAA+AGG | 0.621209 | 1_4:-4652005 | Msa0145060:intron |
| TCTGAGCGAGTTGCGAGTGG+AGG | 0.622482 | 1_4:-4651602 | Msa0145060:CDS |
| AATAGTTCTGGTGGCAATGG+TGG | 0.623434 | 1_4:-4651275 | Msa0145060:CDS |
| AAGTCGAAGAGTGGTCCACT+TGG | 0.625221 | 1_4:-4651422 | Msa0145060:CDS |
| GGAGCAGCGATCGACGCTGG+CGG | 0.626239 | 1_4:+4652556 | None:intergenic |
| TCAAGAACACGCAACACCAC+CGG | 0.628130 | 1_4:-4652665 | Msa0145060:CDS |
| GAATAATACGCAACACCAGG+TGG | 0.633920 | 1_4:+4651398 | None:intergenic |
| CAGTTCCACAGCCACTGAGG+AGG | 0.636904 | 1_4:-4651448 | Msa0145060:CDS |
| GCCGGTGACGGTGTTGCCGG+TGG | 0.637849 | 1_4:+4652649 | None:intergenic |
| CAATCGTCGATTCCTTCCCG+AGG | 0.641783 | 1_4:-4651176 | Msa0145060:intron |
| CATGGATGCTCTCAGATGCA+GGG | 0.641801 | 1_4:-4651200 | Msa0145060:CDS |
| CTAAATGGGAAGATGCGGAA+AGG | 0.642650 | 1_4:-4651517 | Msa0145060:CDS |
| TTGTCCCAGGGCTAAAAGGG+AGG | 0.643693 | 1_4:-4649812 | Msa0145060:intron |
| GCAACACCAGGTGGACCAAG+TGG | 0.644295 | 1_4:+4651407 | None:intergenic |
| CGGGAACGGGTACAGCGACG+GGG | 0.644689 | 1_4:-4651703 | Msa0145060:CDS |
| TTAGCATAACAACCTCGGGA+AGG | 0.645636 | 1_4:+4651164 | None:intergenic |
| GGATATCAGGGATGTGCAGG+TGG | 0.646158 | 1_4:-4650470 | Msa0145060:CDS |
| ATGCAAGGATCCGTTCGTGT+GGG | 0.646814 | 1_4:+4651242 | None:intergenic |
| AGGAGGCCTAAGTCGAAGAG+TGG | 0.652822 | 1_4:-4651431 | Msa0145060:CDS |
| ACTCAAAGAACCCATCTGGC+CGG | 0.658538 | 1_4:+4649054 | None:intergenic |
| GGCAACCCAGATGAGCCCAG+AGG | 0.663230 | 1_4:-4650593 | Msa0145060:CDS |
| AGCAGCAATACAGAAACTAG+AGG | 0.664918 | 1_4:-4649743 | Msa0145060:intron |
| GAACAGAAACTATCAAGTAG+GGG | 0.666153 | 1_4:+4648255 | None:intergenic |
| AGATTCGAGAGTGAAGATGA+CGG | 0.670327 | 1_4:+4652604 | None:intergenic |
| AGTTACCAGAACTTCTCACA+AGG | 0.678148 | 1_4:-4649095 | Msa0145060:CDS |
| AATTATCGTCATTGTCAAGG+TGG | 0.691775 | 1_4:-4651650 | Msa0145060:CDS |
| TTTCGGAGTTTAAGGAGTCG+CGG | 0.692109 | 1_4:+4652513 | None:intergenic |
| TTTCAGTTCCACAGCCACTG+AGG | 0.695040 | 1_4:-4651451 | Msa0145060:CDS |
| ACGAACAACGACGCTCGTGG+AGG | 0.699696 | 1_4:-4652700 | Msa0145060:CDS |
| TTCGACTTAGGCCTCCTCAG+TGG | 0.700917 | 1_4:+4651437 | None:intergenic |
| CAGCATTTGGCAGGTCACGG+TGG | 0.721166 | 1_4:-4652365 | Msa0145060:CDS |
| AACGTGTAACCATGACAAGG+TGG | 0.733238 | 1_4:-4650444 | Msa0145060:CDS |
| AAGGTGGTCCAAGAAACACA+AGG | 0.772366 | 1_4:-4650428 | Msa0145060:CDS |
| ATGAACGTGTAACCATGACA+AGG | 0.775798 | 1_4:-4650447 | Msa0145060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTAAATAAGAGAAAA+TGG | + | chr1_4:4648147-4648166 | None:intergenic | 10.0% |
| !! | AATAATTAAAAAGTGAAAAA+AGG | + | chr1_4:4648874-4648893 | None:intergenic | 10.0% |
| !!! | TTTAGAATTTTAATATGCTT+TGG | - | chr1_4:4650069-4650088 | Msa0145060:intron | 15.0% |
| !! | ATTTCAATTTAATCATTTCA+TGG | + | chr1_4:4650988-4651007 | None:intergenic | 15.0% |
| !!! | TATTATCTTAAGTTTCATTT+TGG | - | chr1_4:4651395-4651414 | Msa0145060:CDS | 15.0% |
| !!! | ATTATCTTAAGTTTCATTTT+GGG | - | chr1_4:4651396-4651415 | Msa0145060:CDS | 15.0% |
| !!! | ATTTTTATGCTTTTTGATTA+AGG | - | chr1_4:4652480-4652499 | Msa0145060:intron | 15.0% |
| !!! | TTTCTGTTATGATTTTGATT+CGG | + | chr1_4:4648734-4648753 | None:intergenic | 20.0% |
| !!! | CTTTATTTAAAAAGCAAGAT+CGG | - | chr1_4:4649180-4649199 | Msa0145060:CDS | 20.0% |
| !!! | TTTTTTCATGTGCTAAATAT+AGG | - | chr1_4:4650763-4650782 | Msa0145060:intron | 20.0% |
| !!! | TCTTTATATGACATTGATTT+CGG | + | chr1_4:4650813-4650832 | None:intergenic | 20.0% |
| !!! | TTATTACCACCTTTAAAATA+TGG | - | chr1_4:4651038-4651057 | Msa0145060:intron | 20.0% |
| !!! | TTTTCTAGTTTGAATTGAAT+AGG | + | chr1_4:4651078-4651097 | None:intergenic | 20.0% |
| !! | AAGATAATATATGTGTATGT+AGG | + | chr1_4:4651384-4651403 | None:intergenic | 20.0% |
| !! | TATGATGAAGTAAAAAAAAG+TGG | + | chr1_4:4651652-4651671 | None:intergenic | 20.0% |
| !!! | ATTACTTTCCTTTACTTTTA+GGG | + | chr1_4:4651752-4651771 | None:intergenic | 20.0% |
| !!! | AATTACTTTCCTTTACTTTT+AGG | + | chr1_4:4651753-4651772 | None:intergenic | 20.0% |
| !! | ATTGTATGCTAATATATTTG+TGG | - | chr1_4:4652093-4652112 | Msa0145060:intron | 20.0% |
| !!! | TTGTCTACATAATTTAGAAT+TGG | - | chr1_4:4652155-4652174 | Msa0145060:intron | 20.0% |
| !!! | TCTACATAATTTAGAATTTG+AGG | - | chr1_4:4652230-4652249 | Msa0145060:CDS | 20.0% |
| !!! | CTACATAATTTAGAATTTGA+GGG | - | chr1_4:4652231-4652250 | Msa0145060:CDS | 20.0% |
| !!! | TACATAATTTAGAATTTGAG+GGG | - | chr1_4:4652232-4652251 | Msa0145060:CDS | 20.0% |
| !! | ATAGTAATTTAGTAAACTTG+AGG | + | chr1_4:4652413-4652432 | None:intergenic | 20.0% |
| !!! | AAAAAGCATAAAAATGAACA+AGG | + | chr1_4:4652475-4652494 | None:intergenic | 20.0% |
| !! | AATAATGTATGTATGTACTT+AGG | - | chr1_4:4652709-4652728 | Msa0145060:CDS | 20.0% |
| ! | AAAAAGTGAAAAAAGGATAG+TGG | + | chr1_4:4648867-4648886 | None:intergenic | 25.0% |
| !!! | TATGTTTTGAATCTGATTTG+CGG | - | chr1_4:4650169-4650188 | Msa0145060:intron | 25.0% |
| !! | GCATAATATTTTTCATAACG+TGG | + | chr1_4:4650221-4650240 | None:intergenic | 25.0% |
| !!! | TTTTCTTTTCTTTTTCACGT+TGG | - | chr1_4:4650328-4650347 | Msa0145060:CDS | 25.0% |
| !!! | TTTCTCTAAAATGGATATCA+GGG | - | chr1_4:4650542-4650561 | Msa0145060:CDS | 25.0% |
| !!! | CACTAAATTTGCTATGTTAT+TGG | - | chr1_4:4650962-4650981 | Msa0145060:intron | 25.0% |
| !!! | CAATCAGTACCATATTTTAA+AGG | + | chr1_4:4651050-4651069 | None:intergenic | 25.0% |
| !!! | TATTGACTTGCTTTTACTAT+TGG | - | chr1_4:4651505-4651524 | Msa0145060:CDS | 25.0% |
| !!! | ATTGACTTGCTTTTACTATT+GGG | - | chr1_4:4651506-4651525 | Msa0145060:CDS | 25.0% |
| ! | TTTGTTCATAATCTTATCCA+TGG | + | chr1_4:4651844-4651863 | None:intergenic | 25.0% |
| !! | TCTACATAATTTAGAATTGG+AGG | - | chr1_4:4652158-4652177 | Msa0145060:intron | 25.0% |
| !! | CTACATAATTTAGAATTGGA+GGG | - | chr1_4:4652159-4652178 | Msa0145060:intron | 25.0% |
| !! | TACATAATTTAGAATTGGAG+GGG | - | chr1_4:4652160-4652179 | Msa0145060:intron | 25.0% |
| ! | TTACACATAACCTAAAACTA+TGG | + | chr1_4:4652279-4652298 | None:intergenic | 25.0% |
| ! | TGTAAGTTGTGCAAATTTAA+TGG | + | chr1_4:4652451-4652470 | None:intergenic | 25.0% |
| ! | TTACTATGTTGACACTAAAT+TGG | - | chr1_4:4652588-4652607 | Msa0145060:CDS | 25.0% |
| TGAAGAGAAAGTAAATATGG+CGG | + | chr1_4:4648205-4648224 | None:intergenic | 30.0% | |
| GAGTGAAGAGAAAGTAAATA+TGG | + | chr1_4:4648208-4648227 | None:intergenic | 30.0% | |
| TTGTTAACAATGCGTGATTT+AGG | - | chr1_4:4648296-4648315 | Msa0145060:three_prime_UTR | 30.0% | |
| TGTTAACAATGCGTGATTTA+GGG | - | chr1_4:4648297-4648316 | Msa0145060:three_prime_UTR | 30.0% | |
| !!! | TTATGATTTTGATTCGGATC+CGG | + | chr1_4:4648728-4648747 | None:intergenic | 30.0% |
| TATCAACATCACAGTTCAAA+AGG | - | chr1_4:4648934-4648953 | Msa0145060:intron | 30.0% | |
| TAAGATTAGCATAACAACCT+CGG | + | chr1_4:4649868-4649887 | None:intergenic | 30.0% | |
| TCACAACTCAAAACTAGATA+AGG | + | chr1_4:4649917-4649936 | None:intergenic | 30.0% | |
| !!! | CTGTTTTAACTATTGTGATG+TGG | - | chr1_4:4649998-4650017 | Msa0145060:intron | 30.0% |
| ATTCAGTAAATCAGAGTCTT+TGG | - | chr1_4:4650116-4650135 | Msa0145060:intron | 30.0% | |
| CACATAATACTAACATGACA+TGG | + | chr1_4:4650273-4650292 | None:intergenic | 30.0% | |
| ! | GAGTATCTCTTTCTCTAAAA+TGG | - | chr1_4:4650533-4650552 | Msa0145060:CDS | 30.0% |
| !! | CTTTCTCTAAAATGGATATC+AGG | - | chr1_4:4650541-4650560 | Msa0145060:CDS | 30.0% |
| TATAATTTCAAGGTAGCTCA+TGG | + | chr1_4:4650908-4650927 | None:intergenic | 30.0% | |
| TGAGCTACCTTGAAATTATA+TGG | - | chr1_4:4650908-4650927 | Msa0145060:intron | 30.0% | |
| CTACCTTGAAATTATATGGT+TGG | - | chr1_4:4650912-4650931 | Msa0145060:intron | 30.0% | |
| ACTCCAACCATATAATTTCA+AGG | + | chr1_4:4650918-4650937 | None:intergenic | 30.0% | |
| !! | TCAGTACCATATTTTAAAGG+TGG | + | chr1_4:4651047-4651066 | None:intergenic | 30.0% |
| CTAGTTTGAATTGAATAGGA+TGG | + | chr1_4:4651074-4651093 | None:intergenic | 30.0% | |
| !! | AAAACTCATATCACTGACTT+AGG | - | chr1_4:4651145-4651164 | Msa0145060:intron | 30.0% |
| !! | AGTAAATTTTGTTTGTCCCA+GGG | - | chr1_4:4651200-4651219 | Msa0145060:CDS | 30.0% |
| TAAACAAAGAACCACTTGAA+GGG | - | chr1_4:4651304-4651323 | Msa0145060:CDS | 30.0% | |
| TACATAAAAATCCCTTCAAG+TGG | + | chr1_4:4651318-4651337 | None:intergenic | 30.0% | |
| !!! | TCCCTTGTTTTCTTTATTTC+AGG | - | chr1_4:4651423-4651442 | Msa0145060:CDS | 30.0% |
| CCCTGAAATAAAGAAAACAA+GGG | + | chr1_4:4651427-4651446 | None:intergenic | 30.0% | |
| !!! | CCCTTGTTTTCTTTATTTCA+GGG | - | chr1_4:4651424-4651443 | Msa0145060:CDS | 30.0% |
| ACCCTGAAATAAAGAAAACA+AGG | + | chr1_4:4651428-4651447 | None:intergenic | 30.0% | |
| AAATTGAACTTAGGGAAAGA+GGG | + | chr1_4:4651463-4651482 | None:intergenic | 30.0% | |
| AAAATTGAACTTAGGGAAAG+AGG | + | chr1_4:4651464-4651483 | None:intergenic | 30.0% | |
| ! | TCTTTCCCTAAGTTCAATTT+TGG | - | chr1_4:4651463-4651482 | Msa0145060:CDS | 30.0% |
| GATGACCAAAATTGAACTTA+GGG | + | chr1_4:4651471-4651490 | None:intergenic | 30.0% | |
| AGATGACCAAAATTGAACTT+AGG | + | chr1_4:4651472-4651491 | None:intergenic | 30.0% | |
| !! | TTTGCTATTTCAGATGAAGT+TGG | - | chr1_4:4651800-4651819 | Msa0145060:CDS | 30.0% |
| AGCATACAATTCATCTTACT+AGG | + | chr1_4:4652083-4652102 | None:intergenic | 30.0% | |
| ! | GTCAATTGTACCATAGTTTT+AGG | - | chr1_4:4652266-4652285 | Msa0145060:CDS | 30.0% |
| TAGGTTATGTGTAAGTGTTA+AGG | - | chr1_4:4652285-4652304 | Msa0145060:CDS | 30.0% | |
| AAACTTGAGGCTATCAAATT+CGG | + | chr1_4:4652400-4652419 | None:intergenic | 30.0% | |
| ATTTAATGGCAAGTAGGTAA+GGG | + | chr1_4:4652437-4652456 | None:intergenic | 30.0% | |
| AATTTAATGGCAAGTAGGTA+AGG | + | chr1_4:4652438-4652457 | None:intergenic | 30.0% | |
| !! | AGAGGCTTATTTCTAAAGTT+TGG | + | chr1_4:4652735-4652754 | None:intergenic | 30.0% |
| TGAACAGAAACTATCAAGTA+GGG | + | chr1_4:4652773-4652792 | None:intergenic | 30.0% | |
| TTGAACAGAAACTATCAAGT+AGG | + | chr1_4:4652774-4652793 | None:intergenic | 30.0% | |
| GAAGAGAAAGTAAATATGGC+GGG | + | chr1_4:4648204-4648223 | None:intergenic | 35.0% | |
| TTACTTTCTCTTCACTCTCT+TGG | - | chr1_4:4648211-4648230 | Msa0145060:three_prime_UTR | 35.0% | |
| ! | TGCTTCTCTATTTCTTCATC+TGG | - | chr1_4:4648238-4648257 | Msa0145060:three_prime_UTR | 35.0% |
| GGGAAAGCAGAAAAAACAAA+AGG | - | chr1_4:4648812-4648831 | Msa0145060:intron | 35.0% | |
| !! | AGTGACATTGATTCTGAAGA+CGG | - | chr1_4:4648962-4648981 | Msa0145060:intron | 35.0% |
| TGAAGACGGAAATCAACTTT+CGG | - | chr1_4:4648976-4648995 | Msa0145060:intron | 35.0% | |
| GGATTGAAGAATGTCAAGAT+CGG | - | chr1_4:4649141-4649160 | Msa0145060:CDS | 35.0% | |
| TATGGTTCAGTCTAGGAAAT+CGG | - | chr1_4:4649301-4649320 | Msa0145060:intron | 35.0% | |
| CCTTGACAATGACGATAATT+CGG | + | chr1_4:4649374-4649393 | None:intergenic | 35.0% | |
| AATTATCGTCATTGTCAAGG+TGG | - | chr1_4:4649374-4649393 | Msa0145060:intron | 35.0% | |
| ACTGCGTTGTGTTTAAGTAA+TGG | - | chr1_4:4649470-4649489 | Msa0145060:intron | 35.0% | |
| CTGCGTTGTGTTTAAGTAAT+GGG | - | chr1_4:4649471-4649490 | Msa0145060:intron | 35.0% | |
| ! | GATGGGTTTACAAATAGTTC+TGG | - | chr1_4:4649737-4649756 | Msa0145060:intron | 35.0% |
| AAGATTAGCATAACAACCTC+GGG | + | chr1_4:4649867-4649886 | None:intergenic | 35.0% | |
| CAGAGTCTTTGGATGAAAAT+TGG | - | chr1_4:4650127-4650146 | Msa0145060:intron | 35.0% | |
| ATATCATGTACGCAGAAGTA+TGG | + | chr1_4:4650305-4650324 | None:intergenic | 35.0% | |
| CAAACTTCTCCTCTGTAAAT+TGG | + | chr1_4:4650356-4650375 | None:intergenic | 35.0% | |
| TGAAACAGTAGGAGATACAT+TGG | + | chr1_4:4650400-4650419 | None:intergenic | 35.0% | |
| TATCTCCTACTGTTTCAAGA+AGG | - | chr1_4:4650403-4650422 | Msa0145060:CDS | 35.0% | |
| ATCTCCTACTGTTTCAAGAA+GGG | - | chr1_4:4650404-4650423 | Msa0145060:CDS | 35.0% | |
| GAGAAAGAAGTCCTCATATT+GGG | + | chr1_4:4650474-4650493 | None:intergenic | 35.0% | |
| AGAGAAAGAAGTCCTCATAT+TGG | + | chr1_4:4650475-4650494 | None:intergenic | 35.0% | |
| GGGAAAACTTCACTTCTTAT+TGG | + | chr1_4:4650841-4650860 | None:intergenic | 35.0% | |
| CTGGGACAAACAAAATTTAC+TGG | + | chr1_4:4651201-4651220 | None:intergenic | 35.0% | |
| !! | CAGTAAATTTTGTTTGTCCC+AGG | - | chr1_4:4651199-4651218 | Msa0145060:CDS | 35.0% |
| ! | CTTTTGCAAATTTTCCCATG+CGG | + | chr1_4:4651250-4651269 | None:intergenic | 35.0% |
| GTAAACAAAGAACCACTTGA+AGG | - | chr1_4:4651303-4651322 | Msa0145060:CDS | 35.0% | |
| ATGTAGGAGCAATAATTGCT+TGG | + | chr1_4:4651368-4651387 | None:intergenic | 35.0% | |
| !! | GTCTTGTCGGTTTAAGATAA+TGG | + | chr1_4:4651569-4651588 | None:intergenic | 35.0% |
| ! | TAAACCGACAAGACTAGTTA+TGG | - | chr1_4:4651575-4651594 | Msa0145060:CDS | 35.0% |
| !! | TAGTCCATAACTAGTCTTGT+CGG | + | chr1_4:4651582-4651601 | None:intergenic | 35.0% |
| ! | ATGGACTAATGTCATTACTG+TGG | - | chr1_4:4651594-4651613 | Msa0145060:CDS | 35.0% |
| TGGACTAATGTCATTACTGT+GGG | - | chr1_4:4651595-4651614 | Msa0145060:CDS | 35.0% | |
| AAAGGGATTCTTAATGCATG+CGG | + | chr1_4:4651727-4651746 | None:intergenic | 35.0% | |
| !! | CCTTTACTTTTAGGGAGAAA+GGG | + | chr1_4:4651744-4651763 | None:intergenic | 35.0% |
| !! | TCCTTTACTTTTAGGGAGAA+AGG | + | chr1_4:4651745-4651764 | None:intergenic | 35.0% |
| ACTGAAATTCGCTCAGAAAA+AGG | - | chr1_4:4651863-4651882 | Msa0145060:CDS | 35.0% | |
| ! | CTCACAAGGTTATGTCATTT+CGG | - | chr1_4:4651943-4651962 | Msa0145060:intron | 35.0% |
| GAATGCTGTAGAAGCTTAAA+AGG | + | chr1_4:4652015-4652034 | None:intergenic | 35.0% | |
| CAATTCATCTTACTAGGACA+AGG | + | chr1_4:4652077-4652096 | None:intergenic | 35.0% | |
| ! | ATTTAGAATTTGAGGGGTTG+TGG | - | chr1_4:4652238-4652257 | Msa0145060:CDS | 35.0% |
| TCAAATTCGGATGTAAGAGA+AGG | + | chr1_4:4652387-4652406 | None:intergenic | 35.0% | |
| GTGCAAATTTAATGGCAAGT+AGG | + | chr1_4:4652443-4652462 | None:intergenic | 35.0% | |
| ! | GGGGAAAAAAGTACAAAAAG+AGG | + | chr1_4:4652753-4652772 | None:intergenic | 35.0% |
| GAACAGAAACTATCAAGTAG+GGG | + | chr1_4:4652772-4652791 | None:intergenic | 35.0% | |
| !!! | TGCGTAATTTTGAGATGGAA+AGG | + | chr1_4:4652865-4652884 | None:intergenic | 35.0% |
| !! | AAGCATGCGTAATTTTGAGA+TGG | + | chr1_4:4652870-4652889 | None:intergenic | 35.0% |
| !! | CATCGATTCGCATTTGCATT+TGG | + | chr1_4:4648275-4648294 | None:intergenic | 40.0% |
| AGATTCGAGAGTGAAGATGA+CGG | + | chr1_4:4648423-4648442 | None:intergenic | 40.0% | |
| CAGTGAGATTTCGGAGTTTA+AGG | + | chr1_4:4648522-4648541 | None:intergenic | 40.0% | |
| CTTAAACTCCGAAATCTCAC+TGG | - | chr1_4:4648520-4648539 | Msa0145060:intron | 40.0% | |
| ! | GTGAAGTACCAGTGAGATTT+CGG | + | chr1_4:4648531-4648550 | None:intergenic | 40.0% |
| GAAGATGAACTTGCAGCATT+TGG | - | chr1_4:4648646-4648665 | Msa0145060:intron | 40.0% | |
| ! | TTCGCGAAACTCTTTTCTCT+GGG | - | chr1_4:4648792-4648811 | Msa0145060:intron | 40.0% |
| TCTTTCTCTCTAGCACTCAA+AGG | - | chr1_4:4649019-4649038 | Msa0145060:exon | 40.0% | |
| TTGTTCAGATCTAACGAAGC+AGG | + | chr1_4:4649212-4649231 | None:intergenic | 40.0% | |
| CTGAACAATGCTAATGCAAC+TGG | - | chr1_4:4649224-4649243 | Msa0145060:intron | 40.0% | |
| AATGCTAATGCAACTGGAAC+TGG | - | chr1_4:4649230-4649249 | Msa0145060:intron | 40.0% | |
| TTCATAGCTCCAACTAATCG+AGG | + | chr1_4:4649275-4649294 | None:intergenic | 40.0% | |
| TGGAGCTATGAAGAAGAGTA+TGG | - | chr1_4:4649283-4649302 | Msa0145060:intron | 40.0% | |
| ! | AGAAGAGTATGGTTCAGTCT+AGG | - | chr1_4:4649294-4649313 | Msa0145060:intron | 40.0% |
| ATGGTTCAGTCTAGGAAATC+GGG | - | chr1_4:4649302-4649321 | Msa0145060:intron | 40.0% | |
| CCGAATTATCGTCATTGTCA+AGG | - | chr1_4:4649371-4649390 | Msa0145060:intron | 40.0% | |
| GTGTTGCAATGCAAAAAGGT+TGG | - | chr1_4:4649396-4649415 | Msa0145060:intron | 40.0% | |
| GAGAACATTGCCGTCTAAAT+GGG | - | chr1_4:4649493-4649512 | Msa0145060:intron | 40.0% | |
| !! | GTGGATTTTGAGTCCTGTTT+CGG | - | chr1_4:4649529-4649548 | Msa0145060:intron | 40.0% |
| !! | TGGATTTTGAGTCCTGTTTC+GGG | - | chr1_4:4649530-4649549 | Msa0145060:intron | 40.0% |
| AACGAATAATACGCAACACC+AGG | + | chr1_4:4649632-4649651 | None:intergenic | 40.0% | |
| !!! | CAGGTCACTTTTTTGATGGA+GGG | - | chr1_4:4649663-4649682 | Msa0145060:intron | 40.0% |
| GCATTAACAGCAGCAGAAAA+AGG | + | chr1_4:4649710-4649729 | None:intergenic | 40.0% | |
| CTGTTAATGCTTCAGCTGAT+GGG | - | chr1_4:4649720-4649739 | Msa0145060:intron | 40.0% | |
| !! | GGGTTTACAAATAGTTCTGG+TGG | - | chr1_4:4649740-4649759 | Msa0145060:intron | 40.0% |
| !! | ACAAATAGTTCTGGTGGCAA+TGG | - | chr1_4:4649746-4649765 | Msa0145060:CDS | 40.0% |
| ! | TGTGATGTGGATTGAACTCT+TGG | - | chr1_4:4650011-4650030 | Msa0145060:intron | 40.0% |
| GGAGAAGTTTGATGCTTTCA+AGG | - | chr1_4:4650365-4650384 | Msa0145060:CDS | 40.0% | |
| GTTTGATGCTTTCAAGGATG+CGG | - | chr1_4:4650371-4650390 | Msa0145060:CDS | 40.0% | |
| TTTGATGCTTTCAAGGATGC+GGG | - | chr1_4:4650372-4650391 | Msa0145060:CDS | 40.0% | |
| ATGTCCCTTCTTGAAACAGT+AGG | + | chr1_4:4650411-4650430 | None:intergenic | 40.0% | |
| TACTGTTTCAAGAAGGGACA+TGG | - | chr1_4:4650410-4650429 | Msa0145060:CDS | 40.0% | |
| ATACTCTGCAAATCTGTGAC+GGG | + | chr1_4:4650519-4650538 | None:intergenic | 40.0% | |
| GATACTCTGCAAATCTGTGA+CGG | + | chr1_4:4650520-4650539 | None:intergenic | 40.0% | |
| ATGAACGTGTAACCATGACA+AGG | - | chr1_4:4650577-4650596 | Msa0145060:CDS | 40.0% | |
| TGAACCTCTACCAGTGAATA+GGG | + | chr1_4:4650622-4650641 | None:intergenic | 40.0% | |
| GTTCAGAAAATGTTGACAGC+TGG | - | chr1_4:4650637-4650656 | Msa0145060:CDS | 40.0% | |
| ! | ATTTTCCCATGCGGTGATTT+TGG | + | chr1_4:4651241-4651260 | None:intergenic | 40.0% |
| CGCATGGGAAAATTTGCAAA+AGG | - | chr1_4:4651248-4651267 | Msa0145060:CDS | 40.0% | |
| AGCAGCAATACAGAAACTAG+AGG | - | chr1_4:4651281-4651300 | Msa0145060:CDS | 40.0% | |
| GATGATCACTTGAGCTAGTA+GGG | + | chr1_4:4651346-4651365 | None:intergenic | 40.0% | |
| ! | ATTACTGTGGGCTGTCTAAT+AGG | - | chr1_4:4651607-4651626 | Msa0145060:CDS | 40.0% |
| CCCTTTCTCCCTAAAAGTAA+AGG | - | chr1_4:4651741-4651760 | Msa0145060:CDS | 40.0% | |
| AGAAAAAGGCTCAGGAAATG+AGG | - | chr1_4:4651877-4651896 | Msa0145060:CDS | 40.0% | |
| AGTTACCAGAACTTCTCACA+AGG | - | chr1_4:4651929-4651948 | Msa0145060:intron | 40.0% | |
| CATAACCTTGTGAGAAGTTC+TGG | + | chr1_4:4651937-4651956 | None:intergenic | 40.0% | |
| ! | AGAAGCTTAAAAGGCATGAC+AGG | + | chr1_4:4652006-4652025 | None:intergenic | 40.0% |
| CTAGCTTCACTTGAACAGAA+AGG | + | chr1_4:4652037-4652056 | None:intergenic | 40.0% | |
| CTTTCTGTTCAAGTGAAGCT+AGG | - | chr1_4:4652035-4652054 | Msa0145060:CDS | 40.0% | |
| ! | ATTTAGAATTGGAGGGGTTG+TGG | - | chr1_4:4652166-4652185 | Msa0145060:intron | 40.0% |
| ! | AGGAATCTGAAGCAGGAAAT+GGG | + | chr1_4:4652367-4652386 | None:intergenic | 40.0% |
| ! | AAGGAATCTGAAGCAGGAAA+TGG | + | chr1_4:4652368-4652387 | None:intergenic | 40.0% |
| ! | TAAGAGAAGGAATCTGAAGC+AGG | + | chr1_4:4652374-4652393 | None:intergenic | 40.0% |
| ACCAGGTTTCAGAAATCAGA+AGG | - | chr1_4:4652517-4652536 | Msa0145060:CDS | 40.0% | |
| !! | TCCTTCTGATTTCTGAAACC+TGG | + | chr1_4:4652521-4652540 | None:intergenic | 40.0% |
| TGAAGTACAAGCACTTTAGC+CGG | - | chr1_4:4652634-4652653 | Msa0145060:CDS | 40.0% | |
| ! | ACAAGGCACTTAGATTCTAC+CGG | + | chr1_4:4652656-4652675 | None:intergenic | 40.0% |
| AATACGAACTCCCAAGTATG+AGG | + | chr1_4:4652681-4652700 | None:intergenic | 40.0% | |
| TTTCGGAGTTTAAGGAGTCG+CGG | + | chr1_4:4648514-4648533 | None:intergenic | 45.0% | |
| ATGAACTTGCAGCATTTGGC+AGG | - | chr1_4:4648650-4648669 | Msa0145060:intron | 45.0% | |
| ! | ATTTTGCTCCGAGTGAAAGC+TGG | - | chr1_4:4648684-4648703 | Msa0145060:intron | 45.0% |
| !!! | TTTTGATTCGGATCCGGATC+CGG | + | chr1_4:4648722-4648741 | None:intergenic | 45.0% |
| ! | CTTCGCGAAACTCTTTTCTC+TGG | - | chr1_4:4648791-4648810 | Msa0145060:intron | 45.0% |
| AATGCAACTGGAACTGGAAC+TGG | - | chr1_4:4649236-4649255 | Msa0145060:intron | 45.0% | |
| TCAGTCTAGGAAATCGGGAA+CGG | - | chr1_4:4649307-4649326 | Msa0145060:intron | 45.0% | |
| !! | GGTGGTGTTGCAATGCAAAA+AGG | - | chr1_4:4649392-4649411 | Msa0145060:intron | 45.0% |
| ! | CACCATTACCAACTTGCTTC+CGG | + | chr1_4:4649448-4649467 | None:intergenic | 45.0% |
| GGAGAACATTGCCGTCTAAA+TGG | - | chr1_4:4649492-4649511 | Msa0145060:intron | 45.0% | |
| TCCGCATCTTCCCATTTAGA+CGG | + | chr1_4:4649506-4649525 | None:intergenic | 45.0% | |
| CTAAATGGGAAGATGCGGAA+AGG | - | chr1_4:4649507-4649526 | Msa0145060:intron | 45.0% | |
| !! | GGATTTTGAGTCCTGTTTCG+GGG | - | chr1_4:4649531-4649550 | Msa0145060:intron | 45.0% |
| !! | GATTTTGAGTCCTGTTTCGG+GGG | - | chr1_4:4649532-4649551 | Msa0145060:intron | 45.0% |
| !! | ATTTTGAGTCCTGTTTCGGG+GGG | - | chr1_4:4649533-4649552 | Msa0145060:intron | 45.0% |
| GAATAATACGCAACACCAGG+TGG | + | chr1_4:4649629-4649648 | None:intergenic | 45.0% | |
| TATTCGTTGTATTCGCCTGC+AGG | - | chr1_4:4649644-4649663 | Msa0145060:intron | 45.0% | |
| CCATCAAAAAAGTGACCTGC+AGG | + | chr1_4:4649662-4649681 | None:intergenic | 45.0% | |
| !!! | CCTGCAGGTCACTTTTTTGA+TGG | - | chr1_4:4649659-4649678 | Msa0145060:intron | 45.0% |
| !!! | GCAGGTCACTTTTTTGATGG+AGG | - | chr1_4:4649662-4649681 | Msa0145060:intron | 45.0% |
| GCTGTTAATGCTTCAGCTGA+TGG | - | chr1_4:4649719-4649738 | Msa0145060:intron | 45.0% | |
| !! | AATAGTTCTGGTGGCAATGG+TGG | - | chr1_4:4649749-4649768 | Msa0145060:CDS | 45.0% |
| TTAGCATAACAACCTCGGGA+AGG | + | chr1_4:4649863-4649882 | None:intergenic | 45.0% | |
| !! | ACGTTGGCTCCAATTTACAG+AGG | - | chr1_4:4650344-4650363 | Msa0145060:CDS | 45.0% |
| AGAAGTCCTCATATTGGGAG+AGG | + | chr1_4:4650469-4650488 | None:intergenic | 45.0% | |
| AATGGATATCAGGGATGTGC+AGG | - | chr1_4:4650551-4650570 | Msa0145060:CDS | 45.0% | |
| AACGTGTAACCATGACAAGG+TGG | - | chr1_4:4650580-4650599 | Msa0145060:CDS | 45.0% | |
| TTTCTTGGACCACCTTGTCA+TGG | + | chr1_4:4650592-4650611 | None:intergenic | 45.0% | |
| AAGGTGGTCCAAGAAACACA+AGG | - | chr1_4:4650596-4650615 | Msa0145060:CDS | 45.0% | |
| ! | GAATAGGGCCTTGTGTTTCT+TGG | + | chr1_4:4650607-4650626 | None:intergenic | 45.0% |
| AAACACAAGGCCCTATTCAC+TGG | - | chr1_4:4650609-4650628 | Msa0145060:CDS | 45.0% | |
| CTGAACCTCTACCAGTGAAT+AGG | + | chr1_4:4650623-4650642 | None:intergenic | 45.0% | |
| CAGCACTCGATCTTCATCTT+GGG | - | chr1_4:4650674-4650693 | Msa0145060:intron | 45.0% | |
| ! | AGGGGGAAGTTGACTTCAAA+GGG | + | chr1_4:4650861-4650880 | None:intergenic | 45.0% |
| ! | AAGGGGGAAGTTGACTTCAA+AGG | + | chr1_4:4650862-4650881 | None:intergenic | 45.0% |
| TCAAGGTAGCTCATGGCATT+TGG | + | chr1_4:4650901-4650920 | None:intergenic | 45.0% | |
| TTGTTTGTCCCAGGGCTAAA+AGG | - | chr1_4:4651208-4651227 | Msa0145060:CDS | 45.0% | |
| TGTTTGTCCCAGGGCTAAAA+GGG | - | chr1_4:4651209-4651228 | Msa0145060:CDS | 45.0% | |
| GGATGATCACTTGAGCTAGT+AGG | + | chr1_4:4651347-4651366 | None:intergenic | 45.0% | |
| AAAGAAGCGAGCATCTTCCA+TGG | - | chr1_4:4651824-4651843 | Msa0145060:CDS | 45.0% | |
| ATTCGCTCAGAAAAAGGCTC+AGG | - | chr1_4:4651869-4651888 | Msa0145060:CDS | 45.0% | |
| TTCTGGTAACTTGATGAGCC+TGG | + | chr1_4:4651920-4651939 | None:intergenic | 45.0% | |
| ! | GTTATGTCATTTCGGAGAGC+CGG | - | chr1_4:4651951-4651970 | Msa0145060:intron | 45.0% |
| AACCACTCAAAGAACCCATC+TGG | + | chr1_4:4651977-4651996 | None:intergenic | 45.0% | |
| ! | GGAATCTGAAGCAGGAAATG+GGG | + | chr1_4:4652366-4652385 | None:intergenic | 45.0% |
| TGCCTTGTAGCCTCATACTT+GGG | - | chr1_4:4652668-4652687 | Msa0145060:CDS | 45.0% | |
| !!! | TTTTTTTTTTTTTTTGTATT+TGG | - | chr1_4:4649120-4649139 | Msa0145060:CDS | 5.0% |
| ! | GGTGTTGCGTGTTCTTGAAC+CGG | + | chr1_4:4648357-4648376 | None:intergenic | 50.0% |
| TCAAGAACACGCAACACCAC+CGG | - | chr1_4:4648359-4648378 | Msa0145060:three_prime_UTR | 50.0% | |
| !! | AGAGTGAAGATGACGGAGTC+AGG | + | chr1_4:4648416-4648435 | None:intergenic | 50.0% |
| AAGCGGAGGAGAAGAGACTA+AGG | + | chr1_4:4648448-4648467 | None:intergenic | 50.0% | |
| TTGCAGCATTTGGCAGGTCA+CGG | - | chr1_4:4648656-4648675 | Msa0145060:intron | 50.0% | |
| ACTGGAACTGGAACTGGAAC+TGG | - | chr1_4:4649242-4649261 | Msa0145060:intron | 50.0% | |
| GGTTCTTCGCCTCGATTAGT+TGG | - | chr1_4:4649263-4649282 | Msa0145060:intron | 50.0% | |
| CAGTCTAGGAAATCGGGAAC+GGG | - | chr1_4:4649308-4649327 | Msa0145060:intron | 50.0% | |
| ACTGGTACATTTCCGAGTCC+TGG | - | chr1_4:4649344-4649363 | Msa0145060:intron | 50.0% | |
| CTGGTACATTTCCGAGTCCT+GGG | - | chr1_4:4649345-4649364 | Msa0145060:intron | 50.0% | |
| TAATTCGGAGTCCCAGGACT+CGG | + | chr1_4:4649359-4649378 | None:intergenic | 50.0% | |
| TGACGATAATTCGGAGTCCC+AGG | + | chr1_4:4649365-4649384 | None:intergenic | 50.0% | |
| GCCGTCTAAATGGGAAGATG+CGG | - | chr1_4:4649502-4649521 | Msa0145060:intron | 50.0% | |
| AATGGGAAGATGCGGAAAGG+TGG | - | chr1_4:4649510-4649529 | Msa0145060:intron | 50.0% | |
| CTGTGGAACTGAAACCCTTC+CGG | + | chr1_4:4649567-4649586 | None:intergenic | 50.0% | |
| TTTCAGTTCCACAGCCACTG+AGG | - | chr1_4:4649573-4649592 | Msa0145060:intron | 50.0% | |
| AGTGGACCACTCTTCGACTT+AGG | + | chr1_4:4649602-4649621 | None:intergenic | 50.0% | |
| AAGTCGAAGAGTGGTCCACT+TGG | - | chr1_4:4649602-4649621 | Msa0145060:intron | 50.0% | |
| ATGCAAGGATCCGTTCGTGT+GGG | + | chr1_4:4649785-4649804 | None:intergenic | 50.0% | |
| GCTCGCTCAGTTAGTGTACA+TGG | - | chr1_4:4649806-4649825 | Msa0145060:CDS | 50.0% | |
| ACATGGATGCTCTCAGATGC+AGG | - | chr1_4:4649823-4649842 | Msa0145060:intron | 50.0% | |
| CATGGATGCTCTCAGATGCA+GGG | - | chr1_4:4649824-4649843 | Msa0145060:intron | 50.0% | |
| CATGCTCCTCTCCCAATATG+AGG | - | chr1_4:4650460-4650479 | Msa0145060:CDS | 50.0% | |
| AAGGCCCTATTCACTGGTAG+AGG | - | chr1_4:4650615-4650634 | Msa0145060:CDS | 50.0% | |
| CCAAGATGAAGATCGAGTGC+TGG | + | chr1_4:4650676-4650695 | None:intergenic | 50.0% | |
| CCAGCACTCGATCTTCATCT+TGG | - | chr1_4:4650673-4650692 | Msa0145060:intron | 50.0% | |
| TTAAGAGCAGAGCGAGAAGG+GGG | + | chr1_4:4650878-4650897 | None:intergenic | 50.0% | |
| GTTAAGAGCAGAGCGAGAAG+GGG | + | chr1_4:4650879-4650898 | None:intergenic | 50.0% | |
| GGTTAAGAGCAGAGCGAGAA+GGG | + | chr1_4:4650880-4650899 | None:intergenic | 50.0% | |
| TGGTTAAGAGCAGAGCGAGA+AGG | + | chr1_4:4650881-4650900 | None:intergenic | 50.0% | |
| AGGAAGCCAAAATCACCGCA+TGG | - | chr1_4:4651232-4651251 | Msa0145060:CDS | 50.0% | |
| GGAAGCCAAAATCACCGCAT+GGG | - | chr1_4:4651233-4651252 | Msa0145060:CDS | 50.0% | |
| GAGTTCAGTTTCAGTCGACC+AGG | - | chr1_4:4651899-4651918 | Msa0145060:intron | 50.0% | |
| ACTCAAAGAACCCATCTGGC+CGG | + | chr1_4:4651973-4651992 | None:intergenic | 50.0% | |
| GTGCCTTGTAGCCTCATACT+TGG | - | chr1_4:4652667-4652686 | Msa0145060:CDS | 50.0% | |
| CTCCCAAGTATGAGGCTACA+AGG | + | chr1_4:4652673-4652692 | None:intergenic | 50.0% | |
| TTCACGAACAACGACGCTCG+TGG | - | chr1_4:4648321-4648340 | Msa0145060:three_prime_UTR | 55.0% | |
| GGACCACTCCAGCTTTCACT+CGG | + | chr1_4:4648695-4648714 | None:intergenic | 55.0% | |
| AAGCTGGAGTGGTCCAGATC+CGG | - | chr1_4:4648700-4648719 | Msa0145060:intron | 55.0% | |
| !! | AGTTCTGAGCGAGTTGCGAG+TGG | - | chr1_4:4649419-4649438 | Msa0145060:intron | 55.0% |
| !! | GGCCGGAAGCAAGTTGGTAA+TGG | - | chr1_4:4649443-4649462 | Msa0145060:intron | 55.0% |
| TTCGACTTAGGCCTCCTCAG+TGG | + | chr1_4:4649590-4649609 | None:intergenic | 55.0% | |
| AGGAGGCCTAAGTCGAAGAG+TGG | - | chr1_4:4649593-4649612 | Msa0145060:intron | 55.0% | |
| ! | AGTTCTGGTGGCAATGGTGG+TGG | - | chr1_4:4649752-4649771 | Msa0145060:CDS | 55.0% |
| AAGGATCCGTTCGTGTGGGA+AGG | + | chr1_4:4649781-4649800 | None:intergenic | 55.0% | |
| CATGCAAGGATCCGTTCGTG+TGG | + | chr1_4:4649786-4649805 | None:intergenic | 55.0% | |
| CACACGAACGGATCCTTGCA+TGG | - | chr1_4:4649784-4649803 | Msa0145060:CDS | 55.0% | |
| CTAACTGAGCGAGCCATGCA+AGG | + | chr1_4:4649800-4649819 | None:intergenic | 55.0% | |
| !! | CAATCGTCGATTCCTTCCCG+AGG | - | chr1_4:4649848-4649867 | Msa0145060:intron | 55.0% |
| ! | AGGAGCATGAGCTACCCTCT+GGG | + | chr1_4:4650449-4650468 | None:intergenic | 55.0% |
| !! | AAATCTGTGACGGGCAGGGT+AGG | + | chr1_4:4650510-4650529 | None:intergenic | 55.0% |
| !! | CTGCAAATCTGTGACGGGCA+GGG | + | chr1_4:4650514-4650533 | None:intergenic | 55.0% |
| !! | TCTGCAAATCTGTGACGGGC+AGG | + | chr1_4:4650515-4650534 | None:intergenic | 55.0% |
| GGATATCAGGGATGTGCAGG+TGG | - | chr1_4:4650554-4650573 | Msa0145060:CDS | 55.0% | |
| TTGTCCCAGGGCTAAAAGGG+AGG | - | chr1_4:4651212-4651231 | Msa0145060:CDS | 55.0% | |
| ! | GCTTCCTCCCTTTTAGCCCT+GGG | + | chr1_4:4651219-4651238 | None:intergenic | 55.0% |
| ! | GGCCAGATGGGTTCTTTGAG+TGG | - | chr1_4:4651972-4651991 | Msa0145060:intron | 55.0% |
| AGGCTGTTGCATGCTTGACC+AGG | - | chr1_4:4652500-4652519 | Msa0145060:intron | 55.0% | |
| ACGAACAACGACGCTCGTGG+AGG | - | chr1_4:4648324-4648343 | Msa0145060:three_prime_UTR | 60.0% | |
| !! | GTCGTGAGCATCGGAAGCGA+AGG | + | chr1_4:4648492-4648511 | None:intergenic | 60.0% |
| CAGCATTTGGCAGGTCACGG+TGG | - | chr1_4:4648659-4648678 | Msa0145060:intron | 60.0% | |
| GCTCCGAGTGAAAGCTGGAG+TGG | - | chr1_4:4648689-4648708 | Msa0145060:intron | 60.0% | |
| GAGTGGTCCAGATCCGGATC+CGG | - | chr1_4:4648706-4648725 | Msa0145060:intron | 60.0% | |
| TTCGGATCCGGATCCGGATC+TGG | + | chr1_4:4648716-4648735 | None:intergenic | 60.0% | |
| ATCGGGAACGGGTACAGCGA+CGG | - | chr1_4:4649319-4649338 | Msa0145060:intron | 60.0% | |
| TCTGAGCGAGTTGCGAGTGG+AGG | - | chr1_4:4649422-4649441 | Msa0145060:intron | 60.0% | |
| AGTGGAGGCCGGAAGCAAGT+TGG | - | chr1_4:4649437-4649456 | Msa0145060:intron | 60.0% | |
| AGTCCTGTTTCGGGGGGTGA+TGG | - | chr1_4:4649539-4649558 | Msa0145060:intron | 60.0% | |
| GTTCCATCACCCCCCGAAAC+AGG | + | chr1_4:4649545-4649564 | None:intergenic | 60.0% | |
| !! | GTTTCGGGGGGTGATGGAAC+CGG | - | chr1_4:4649545-4649564 | Msa0145060:intron | 60.0% |
| CAGTTCCACAGCCACTGAGG+AGG | - | chr1_4:4649576-4649595 | Msa0145060:intron | 60.0% | |
| TTAGGCCTCCTCAGTGGCTG+TGG | + | chr1_4:4649584-4649603 | None:intergenic | 60.0% | |
| AGTGGTCCACTTGGTCCACC+TGG | - | chr1_4:4649611-4649630 | Msa0145060:intron | 60.0% | |
| GCAACACCAGGTGGACCAAG+TGG | + | chr1_4:4649620-4649639 | None:intergenic | 60.0% | |
| !! | TCTGGTGGCAATGGTGGTGG+AGG | - | chr1_4:4649755-4649774 | Msa0145060:CDS | 60.0% |
| TGGAGGCCTTCCCACACGAA+CGG | - | chr1_4:4649772-4649791 | Msa0145060:CDS | 60.0% | |
| GCAACCCAGATGAGCCCAGA+GGG | - | chr1_4:4650432-4650451 | Msa0145060:CDS | 60.0% | |
| GCTACCCTCTGGGCTCATCT+GGG | + | chr1_4:4650439-4650458 | None:intergenic | 60.0% | |
| AGCTACCCTCTGGGCTCATC+TGG | + | chr1_4:4650440-4650459 | None:intergenic | 60.0% | |
| ! | GAGGAGCATGAGCTACCCTC+TGG | + | chr1_4:4650450-4650469 | None:intergenic | 60.0% |
| ! | GGCTTCCTCCCTTTTAGCCC+TGG | + | chr1_4:4651220-4651239 | None:intergenic | 60.0% |
| ATTTCGGAGAGCCGGCCAGA+TGG | - | chr1_4:4651959-4651978 | Msa0145060:intron | 60.0% | |
| TTTCGGAGAGCCGGCCAGAT+GGG | - | chr1_4:4651960-4651979 | Msa0145060:intron | 60.0% | |
| ! | CGCTCGTGGAGGCGTAACAC+CGG | - | chr1_4:4648335-4648354 | Msa0145060:three_prime_UTR | 65.0% |
| ACCACCGGCAACACCGTCAC+CGG | - | chr1_4:4648374-4648393 | Msa0145060:three_prime_UTR | 65.0% | |
| AGGACTTGTATCGCCGCCGC+CGG | + | chr1_4:4648396-4648415 | None:intergenic | 65.0% | |
| GAAGGAGCAGCGATCGACGC+TGG | + | chr1_4:4648474-4648493 | None:intergenic | 65.0% | |
| GGAGTCGCGGTCGTGAGCAT+CGG | + | chr1_4:4648501-4648520 | None:intergenic | 65.0% | |
| TCGGGAACGGGTACAGCGAC+GGG | - | chr1_4:4649320-4649339 | Msa0145060:intron | 65.0% | |
| AGCGAGTTGCGAGTGGAGGC+CGG | - | chr1_4:4649426-4649445 | Msa0145060:intron | 65.0% | |
| !! | GGGGGGTGATGGAACCGGAA+GGG | - | chr1_4:4649550-4649569 | Msa0145060:intron | 65.0% |
| GGCAACCCAGATGAGCCCAG+AGG | - | chr1_4:4650431-4650450 | Msa0145060:CDS | 65.0% | |
| !! | TCTGTGACGGGCAGGGTAGG+TGG | + | chr1_4:4650507-4650526 | None:intergenic | 65.0% |
| ACCGGCAACACCGTCACCGG+CGG | - | chr1_4:4648377-4648396 | Msa0145060:three_prime_UTR | 70.0% | |
| TGTATCGCCGCCGCCGGTGA+CGG | + | chr1_4:4648390-4648409 | None:intergenic | 70.0% | |
| ATCGACGCTGGCGGAAGCGG+AGG | + | chr1_4:4648462-4648481 | None:intergenic | 70.0% | |
| GCGATCGACGCTGGCGGAAG+CGG | + | chr1_4:4648465-4648484 | None:intergenic | 70.0% | |
| GGAGCAGCGATCGACGCTGG+CGG | + | chr1_4:4648471-4648490 | None:intergenic | 70.0% | |
| CGGGAACGGGTACAGCGACG+GGG | - | chr1_4:4649321-4649340 | Msa0145060:intron | 70.0% | |
| ACGGGTACAGCGACGGGGAC+TGG | - | chr1_4:4649326-4649345 | Msa0145060:intron | 70.0% | |
| !! | CGGGGGGTGATGGAACCGGA+AGG | - | chr1_4:4649549-4649568 | Msa0145060:intron | 70.0% |
| GACGGGCAGGGTAGGTGGAG+TGG | + | chr1_4:4650502-4650521 | None:intergenic | 70.0% | |
| !! | GCCGGTGACGGTGTTGCCGG+TGG | + | chr1_4:4648378-4648397 | None:intergenic | 75.0% |
| !! | GCCGCCGGTGACGGTGTTGC+CGG | + | chr1_4:4648381-4648400 | None:intergenic | 75.0% |
| GGCAACACCGTCACCGGCGG+CGG | - | chr1_4:4648380-4648399 | Msa0145060:three_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 4648138 | 4652908 | 4648138 | ID=Msa0145060;Name=Msa0145060 |
| chr1_4 | mRNA | 4648138 | 4652908 | 4648138 | ID=Msa0145060-mRNA-1;Parent=Msa0145060;Name=Msa0145060-mRNA-1;_AED=0.05;_eAED=0.05;_QI=167|0.85|0.87|1|0.85|0.75|8|424|639 |
| chr1_4 | exon | 4648138 | 4648524 | 4648138 | ID=Msa0145060-mRNA-1:exon:1980;Parent=Msa0145060-mRNA-1 |
| chr1_4 | exon | 4648990 | 4649233 | 4648990 | ID=Msa0145060-mRNA-1:exon:1979;Parent=Msa0145060-mRNA-1 |
| chr1_4 | exon | 4649744 | 4649825 | 4649744 | ID=Msa0145060-mRNA-1:exon:1978;Parent=Msa0145060-mRNA-1 |
| chr1_4 | exon | 4650319 | 4650682 | 4650319 | ID=Msa0145060-mRNA-1:exon:1977;Parent=Msa0145060-mRNA-1 |
| chr1_4 | exon | 4651177 | 4651896 | 4651177 | ID=Msa0145060-mRNA-1:exon:1976;Parent=Msa0145060-mRNA-1 |
| chr1_4 | exon | 4652006 | 4652098 | 4652006 | ID=Msa0145060-mRNA-1:exon:1975;Parent=Msa0145060-mRNA-1 |
| chr1_4 | exon | 4652213 | 4652429 | 4652213 | ID=Msa0145060-mRNA-1:exon:1974;Parent=Msa0145060-mRNA-1 |
| chr1_4 | exon | 4652505 | 4652908 | 4652505 | ID=Msa0145060-mRNA-1:exon:1973;Parent=Msa0145060-mRNA-1 |
| chr1_4 | five_prime_UTR | 4652742 | 4652908 | 4652742 | ID=Msa0145060-mRNA-1:five_prime_utr;Parent=Msa0145060-mRNA-1 |
| chr1_4 | CDS | 4652505 | 4652741 | 4652505 | ID=Msa0145060-mRNA-1:cds;Parent=Msa0145060-mRNA-1 |
| chr1_4 | CDS | 4652213 | 4652429 | 4652213 | ID=Msa0145060-mRNA-1:cds;Parent=Msa0145060-mRNA-1 |
| chr1_4 | CDS | 4652006 | 4652098 | 4652006 | ID=Msa0145060-mRNA-1:cds;Parent=Msa0145060-mRNA-1 |
| chr1_4 | CDS | 4651177 | 4651896 | 4651177 | ID=Msa0145060-mRNA-1:cds;Parent=Msa0145060-mRNA-1 |
| chr1_4 | CDS | 4650319 | 4650682 | 4650319 | ID=Msa0145060-mRNA-1:cds;Parent=Msa0145060-mRNA-1 |
| chr1_4 | CDS | 4649744 | 4649825 | 4649744 | ID=Msa0145060-mRNA-1:cds;Parent=Msa0145060-mRNA-1 |
| chr1_4 | CDS | 4649027 | 4649233 | 4649027 | ID=Msa0145060-mRNA-1:cds;Parent=Msa0145060-mRNA-1 |
| chr1_4 | three_prime_UTR | 4648990 | 4649026 | 4648990 | ID=Msa0145060-mRNA-1:three_prime_utr;Parent=Msa0145060-mRNA-1 |
| chr1_4 | three_prime_UTR | 4648138 | 4648524 | 4648138 | ID=Msa0145060-mRNA-1:three_prime_utr;Parent=Msa0145060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
