Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145700 | XP_013466041.1 | 95.949 | 469 | 2 | 1 | 1 | 452 | 1 | 469 | 0.0 | 936 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145700 | sp|P0C7Q8|DA1_ARATH | 59.475 | 533 | 132 | 8 | 1 | 451 | 1 | 531 | 0.0 | 604 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145700 | A0A072VE38 | 95.949 | 469 | 2 | 1 | 1 | 452 | 1 | 469 | 0.0 | 936 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0145700 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010580 | Msa0145700 | 0.871203 | 8.175166e-67 | -8.615850e-47 |
| Msa0050970 | Msa0145700 | 0.981220 | 4.611766e-152 | -8.615850e-47 |
| Msa0145700 | Msa0759610 | 0.801346 | 9.403862e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145700 | MtrunA17_Chr1g0154501 | 95.949 | 469 | 2 | 1 | 1 | 452 | 1 | 469 | 0.0 | 936 |
| Msa0145700 | MtrunA17_Chr8g0373781 | 56.685 | 531 | 150 | 8 | 1 | 451 | 1 | 531 | 0.0 | 558 |
| Msa0145700 | MtrunA17_Chr5g0436051 | 50.524 | 477 | 205 | 5 | 1 | 451 | 144 | 615 | 6.20e-164 | 476 |
| Msa0145700 | MtrunA17_Chr3g0112601 | 50.405 | 494 | 190 | 10 | 1 | 451 | 31 | 512 | 2.22e-157 | 455 |
| Msa0145700 | MtrunA17_Chr5g0403261 | 50.820 | 366 | 102 | 4 | 1 | 288 | 1 | 366 | 8.63e-124 | 364 |
| Msa0145700 | MtrunA17_Chr5g0403301 | 64.643 | 280 | 93 | 1 | 178 | 451 | 27 | 306 | 1.38e-121 | 356 |
| Msa0145700 | MtrunA17_Chr5g0403271 | 68.421 | 152 | 43 | 1 | 305 | 451 | 2 | 153 | 8.84e-63 | 200 |
| Msa0145700 | MtrunA17_Chr5g0403291 | 56.818 | 88 | 38 | 0 | 106 | 193 | 379 | 466 | 8.01e-32 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145700 | AT1G19270.1 | 59.475 | 533 | 132 | 8 | 1 | 451 | 1 | 531 | 0.0 | 604 |
| Msa0145700 | AT1G19270.2 | 59.475 | 533 | 132 | 8 | 1 | 451 | 1 | 531 | 0.0 | 604 |
| Msa0145700 | AT4G36860.1 | 62.069 | 435 | 133 | 5 | 43 | 451 | 125 | 553 | 0.0 | 540 |
| Msa0145700 | AT4G36860.3 | 62.069 | 435 | 133 | 5 | 43 | 451 | 149 | 577 | 0.0 | 540 |
| Msa0145700 | AT2G39830.1 | 51.329 | 489 | 190 | 8 | 1 | 451 | 49 | 527 | 8.25e-165 | 475 |
| Msa0145700 | AT2G39830.3 | 51.458 | 480 | 194 | 6 | 1 | 451 | 49 | 518 | 3.34e-164 | 473 |
| Msa0145700 | AT2G39830.2 | 51.016 | 492 | 190 | 9 | 1 | 451 | 49 | 530 | 1.73e-162 | 469 |
| Msa0145700 | AT4G36860.2 | 61.890 | 328 | 99 | 3 | 43 | 348 | 125 | 448 | 6.62e-147 | 427 |
| Msa0145700 | AT2G39830.4 | 49.344 | 381 | 150 | 7 | 1 | 348 | 49 | 419 | 1.79e-123 | 366 |
| Msa0145700 | AT5G66610.3 | 46.556 | 421 | 185 | 8 | 54 | 445 | 15 | 424 | 7.23e-112 | 337 |
| Msa0145700 | AT5G66610.1 | 45.824 | 443 | 201 | 9 | 35 | 445 | 116 | 551 | 1.13e-111 | 340 |
| Msa0145700 | AT5G66620.1 | 44.575 | 424 | 188 | 8 | 54 | 444 | 231 | 640 | 4.36e-110 | 339 |
| Msa0145700 | AT5G66620.3 | 44.575 | 424 | 188 | 8 | 54 | 444 | 222 | 631 | 9.92e-110 | 338 |
| Msa0145700 | AT5G66620.4 | 44.575 | 424 | 188 | 8 | 54 | 444 | 222 | 631 | 9.92e-110 | 338 |
| Msa0145700 | AT5G66610.2 | 43.404 | 470 | 200 | 10 | 35 | 445 | 116 | 578 | 1.24e-106 | 328 |
| Msa0145700 | AT5G66630.1 | 45.628 | 366 | 155 | 9 | 110 | 444 | 346 | 698 | 7.03e-93 | 296 |
| Msa0145700 | AT5G17890.1 | 45.822 | 371 | 169 | 7 | 111 | 451 | 1240 | 1608 | 3.19e-91 | 303 |
| Msa0145700 | AT5G66640.1 | 38.255 | 447 | 218 | 10 | 39 | 444 | 9 | 438 | 8.24e-90 | 280 |
| Msa0145700 | AT5G66640.7 | 38.255 | 447 | 218 | 10 | 39 | 444 | 9 | 438 | 8.24e-90 | 280 |
| Msa0145700 | AT5G66640.5 | 38.255 | 447 | 219 | 10 | 39 | 444 | 40 | 470 | 2.17e-89 | 280 |
| Msa0145700 | AT5G66640.4 | 38.255 | 447 | 218 | 10 | 39 | 444 | 40 | 469 | 2.73e-89 | 280 |
| Msa0145700 | AT5G66640.3 | 44.410 | 322 | 144 | 4 | 158 | 444 | 10 | 331 | 1.62e-85 | 266 |
| Msa0145700 | AT5G66640.6 | 34.676 | 447 | 231 | 11 | 39 | 444 | 40 | 466 | 3.71e-73 | 238 |
| Msa0145700 | AT5G66640.2 | 34.676 | 447 | 230 | 11 | 39 | 444 | 40 | 465 | 4.20e-73 | 238 |
| Msa0145700 | AT5G66620.2 | 43.359 | 256 | 126 | 6 | 54 | 304 | 222 | 463 | 4.56e-64 | 215 |
Find 156 sgRNAs with CRISPR-Local
Find 522 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCTTATAGCATGCTTTA+TGG | 0.147926 | 1_4:+5402685 | None:intergenic |
| GGAGATATCTATACTTAATA+TGG | 0.171031 | 1_4:+5399796 | None:intergenic |
| TCAGACATTTCCCCTGTTTA+TGG | 0.175438 | 1_4:-5399904 | Msa0145700:CDS |
| ATGAGAAACAATGAGATAAA+TGG | 0.207370 | 1_4:+5399774 | None:intergenic |
| TATGGTGAAGGGTCCTTTCT+AGG | 0.258048 | 1_4:+5399839 | None:intergenic |
| GTGAAGTGTGTGATCTAATT+TGG | 0.262042 | 1_4:+5406367 | None:intergenic |
| AGAGCTTCCTTCCATCCTTA+TGG | 0.265230 | 1_4:+5401857 | None:intergenic |
| GTAACAAAATTGAAATAGTT+TGG | 0.270323 | 1_4:+5406327 | None:intergenic |
| CATGTTATCATTTCCATGTT+TGG | 0.271952 | 1_4:+5404941 | None:intergenic |
| TATTACTTGCCATCAACTTC+AGG | 0.279065 | 1_4:-5405885 | Msa0145700:CDS |
| AGAAGGTATTTGTCAGGTTT+TGG | 0.289094 | 1_4:-5400076 | Msa0145700:CDS |
| AATATAGGGCACACCCATTC+TGG | 0.293148 | 1_4:-5402088 | Msa0145700:CDS |
| ATGTTATCATTTCCATGTTT+GGG | 0.306036 | 1_4:+5404942 | None:intergenic |
| AATAGAAGAAAGTCTAAATT+TGG | 0.307251 | 1_4:-5404973 | Msa0145700:CDS |
| TAAATTGCTTGGGTGCATTC+TGG | 0.307599 | 1_4:-5402904 | Msa0145700:CDS |
| TCAGCAAGTTCCTCTACTTT+TGG | 0.312173 | 1_4:-5401734 | Msa0145700:CDS |
| TTTGTCTTTGTGTTGGGTTT+TGG | 0.327489 | 1_4:-5406738 | Msa0145700:five_prime_UTR |
| CTGCTGGTCTTATTGAATAT+AGG | 0.329484 | 1_4:-5402103 | Msa0145700:CDS |
| TGCTGGTCTTATTGAATATA+GGG | 0.342259 | 1_4:-5402102 | Msa0145700:CDS |
| CTAAACCCATCTCCATAAAC+AGG | 0.350411 | 1_4:+5399892 | None:intergenic |
| GCACGGCAACGGAAGCATTC+AGG | 0.350540 | 1_4:+5402878 | None:intergenic |
| CAAATCAATCTCCTCCTAAC+TGG | 0.353305 | 1_4:-5406627 | Msa0145700:five_prime_UTR |
| CAGTTAGGAGGAGATTGATT+TGG | 0.354028 | 1_4:+5406628 | None:intergenic |
| CATGCATGGCTGCGGCTAAC+AGG | 0.360998 | 1_4:-5400320 | Msa0145700:intron |
| CTTCTTCTAATTGTGATTTG+TGG | 0.366104 | 1_4:+5405015 | None:intergenic |
| TTTCCATAAAGCATGCTATA+AGG | 0.370626 | 1_4:-5402688 | Msa0145700:CDS |
| TTCTTTCACAGATTACTTAC+CGG | 0.370788 | 1_4:-5400368 | Msa0145700:intron |
| TGAAATAGTTTGGTTTGGTT+TGG | 0.373463 | 1_4:+5406337 | None:intergenic |
| TGAGAAACAATGAGATAAAT+GGG | 0.374290 | 1_4:+5399775 | None:intergenic |
| GAGCTTCCTTCCATCCTTAT+GGG | 0.381406 | 1_4:+5401858 | None:intergenic |
| AACTACCCGTCACCTTGATA+TGG | 0.383599 | 1_4:+5399821 | None:intergenic |
| CTCTGAGAGGCAGAGTCCTC+TGG | 0.389800 | 1_4:+5401276 | None:intergenic |
| AAAATTGAAATAGTTTGGTT+TGG | 0.392881 | 1_4:+5406332 | None:intergenic |
| ACTGCAATTCTCATTCTATA+CGG | 0.407169 | 1_4:-5400921 | Msa0145700:CDS |
| GTGATTAGAAACGGAGGCTT+GGG | 0.413167 | 1_4:-5399725 | Msa0145700:three_prime_UTR |
| TGGCCGCTATCTAAATTGCT+TGG | 0.419143 | 1_4:-5402915 | Msa0145700:CDS |
| TAGTTTGGTTTGGTTTGGTT+TGG | 0.421689 | 1_4:+5406342 | None:intergenic |
| TAGACTTTCTTCTATTGCTC+TGG | 0.423924 | 1_4:+5404980 | None:intergenic |
| TTATTATTTAAAATCCAGTT+AGG | 0.423952 | 1_4:+5406613 | None:intergenic |
| ATTTCCCCTGTTTATGGAGA+TGG | 0.425346 | 1_4:-5399898 | Msa0145700:CDS |
| TCGTGCTATTGCGTTGTCTT+TGG | 0.426970 | 1_4:-5405709 | Msa0145700:CDS |
| TGCACCTCATAATCAGAGAT+TGG | 0.431937 | 1_4:+5402845 | None:intergenic |
| ATAAGACCAGCAGGGTTTGT+TGG | 0.433014 | 1_4:+5402113 | None:intergenic |
| GGCCGCTATCTAAATTGCTT+GGG | 0.433359 | 1_4:-5402914 | Msa0145700:CDS |
| TGCTTGCAGACATCACATTT+CGG | 0.436101 | 1_4:+5402654 | None:intergenic |
| AAACGGAGGCTTGGGTACTT+TGG | 0.438070 | 1_4:-5399717 | Msa0145700:three_prime_UTR |
| ACAAGTACCCCTGAAGTTGA+TGG | 0.439731 | 1_4:+5405876 | None:intergenic |
| CAGCGCGCAGTCAGTTTGTA+TGG | 0.443392 | 1_4:+5400951 | None:intergenic |
| TTTCCCCTGTTTATGGAGAT+GGG | 0.444481 | 1_4:-5399897 | Msa0145700:CDS |
| TCCCCAAGCTTCTTCTCAAA+AGG | 0.447372 | 1_4:+5399949 | None:intergenic |
| CCTACCAATCTCTGATTATG+AGG | 0.447976 | 1_4:-5402849 | Msa0145700:intron |
| AGGCAGAGTCCTCTGGTCTC+AGG | 0.449022 | 1_4:+5401283 | None:intergenic |
| TGTTGAAGAAGGTATTTGTC+AGG | 0.458972 | 1_4:-5400082 | Msa0145700:CDS |
| CCCATCGGGAAATACTGAAT+TGG | 0.458973 | 1_4:+5404912 | None:intergenic |
| TGCAATACTGAGATTGGTTA+TGG | 0.459883 | 1_4:-5402935 | Msa0145700:CDS |
| CACTGAATGAAGCGAGGGAG+GGG | 0.460388 | 1_4:-5401699 | Msa0145700:CDS |
| TGGGGTCTCCCTTCGTAAGA+AGG | 0.461766 | 1_4:-5406712 | Msa0145700:five_prime_UTR |
| ATTACTTGCCATCAACTTCA+GGG | 0.464482 | 1_4:-5405884 | Msa0145700:CDS |
| GTGTCTCGATTCTGCTATCA+TGG | 0.464850 | 1_4:-5401827 | Msa0145700:CDS |
| TATAGCATGCTTTATGGAAA+GGG | 0.466425 | 1_4:+5402691 | None:intergenic |
| CCTCCGTTTCTAATCACAAC+AGG | 0.479584 | 1_4:+5399731 | None:intergenic |
| AGTATTTCCCGATGGGGTAC+AGG | 0.482157 | 1_4:-5404905 | Msa0145700:intron |
| AATAATGCTGGTTCCAGAAT+GGG | 0.483891 | 1_4:+5402075 | None:intergenic |
| CAATAATGCTGGTTCCAGAA+TGG | 0.490304 | 1_4:+5402074 | None:intergenic |
| AGATTGATTTGGAATACAAA+GGG | 0.491132 | 1_4:+5406639 | None:intergenic |
| TTATAGCATGCTTTATGGAA+AGG | 0.491264 | 1_4:+5402690 | None:intergenic |
| GACGGGATATATTGCCCATA+AGG | 0.491327 | 1_4:-5401872 | Msa0145700:CDS |
| ACTCATACCTGTACCCCATC+GGG | 0.492801 | 1_4:+5404898 | None:intergenic |
| GGGAAATGTCTGATTCAATC+TGG | 0.498038 | 1_4:+5399914 | None:intergenic |
| GAGATATCTATACTTAATAT+GGG | 0.506138 | 1_4:+5399797 | None:intergenic |
| TGTGATTAGAAACGGAGGCT+TGG | 0.508308 | 1_4:-5399726 | Msa0145700:three_prime_UTR |
| CTATATTCAATAAGACCAGC+AGG | 0.514177 | 1_4:+5402104 | None:intergenic |
| TAGCCTGTTGTGATTAGAAA+CGG | 0.517936 | 1_4:-5399734 | Msa0145700:three_prime_UTR |
| TCTGAGCTTTCTTCTGCACC+AGG | 0.519475 | 1_4:-5400036 | Msa0145700:CDS |
| TTACATAATAGGATATGTGC+TGG | 0.519801 | 1_4:-5402959 | Msa0145700:intron |
| AACTCATACCTGTACCCCAT+CGG | 0.520543 | 1_4:+5404897 | None:intergenic |
| CCAATTCAGTATTTCCCGAT+GGG | 0.521103 | 1_4:-5404912 | Msa0145700:CDS |
| CTTCAGTATATCAGCATGAA+GGG | 0.521307 | 1_4:+5401786 | None:intergenic |
| GGATATATTGCCCATAAGGA+TGG | 0.523228 | 1_4:-5401868 | Msa0145700:CDS |
| TTCTTCCTCCTTCTTACGAA+GGG | 0.523537 | 1_4:+5406704 | None:intergenic |
| TGGTCTCAGGCATATGATAG+TGG | 0.523864 | 1_4:+5401296 | None:intergenic |
| CTCATGAGCTAGAATCGATC+CGG | 0.532124 | 1_4:+5400349 | None:intergenic |
| AATGAATAAATGTGAAGAAG+AGG | 0.532409 | 1_4:+5406513 | None:intergenic |
| GCACTGAATGAAGCGAGGGA+GGG | 0.533144 | 1_4:-5401700 | Msa0145700:CDS |
| ATGAATAAATGTGAAGAAGA+GGG | 0.533394 | 1_4:+5406514 | None:intergenic |
| GTGTGTGTTGTGTGTGAACA+AGG | 0.538655 | 1_4:-5406680 | Msa0145700:five_prime_UTR |
| ACTTCAGTATATCAGCATGA+AGG | 0.540309 | 1_4:+5401785 | None:intergenic |
| CTAAGTCAAGATGTTGAAGA+AGG | 0.540521 | 1_4:-5400093 | Msa0145700:CDS |
| CCTCATAATCAGAGATTGGT+AGG | 0.540834 | 1_4:+5402849 | None:intergenic |
| CTTCGTAAGAAGGAGGAAGA+AGG | 0.546511 | 1_4:-5406702 | Msa0145700:five_prime_UTR |
| TTCGCAAGTATGGCCTAGAA+AGG | 0.547798 | 1_4:-5399852 | Msa0145700:CDS |
| GCTGGCTGCAATACTGAGAT+TGG | 0.548263 | 1_4:-5402941 | Msa0145700:CDS |
| GAGATTGATTTGGAATACAA+AGG | 0.550686 | 1_4:+5406638 | None:intergenic |
| TACATGCAGCCACAAGGGAC+GGG | 0.551584 | 1_4:-5401889 | Msa0145700:intron |
| TATGGAGATGGGTTTAGAGC+CGG | 0.552548 | 1_4:-5399886 | Msa0145700:CDS |
| TTATTTAAAATCCAGTTAGG+AGG | 0.553527 | 1_4:+5406616 | None:intergenic |
| ACCAATTCAGTATTTCCCGA+TGG | 0.560239 | 1_4:-5404913 | Msa0145700:CDS |
| CTCATGAGATGATGCATGCA+TGG | 0.562277 | 1_4:-5400334 | Msa0145700:CDS |
| GCTGATGAAAAGTTGCTGCC+TGG | 0.562692 | 1_4:+5400018 | None:intergenic |
| CTTCTGCAATTTCTTAACAC+AGG | 0.562772 | 1_4:-5406288 | Msa0145700:intron |
| CAGATTCCAACAAACCCTGC+TGG | 0.563194 | 1_4:-5402119 | Msa0145700:CDS |
| GCAATATATCCCGTCCCTTG+TGG | 0.568174 | 1_4:+5401880 | None:intergenic |
| CATGTGAAGGGCAATAATGC+TGG | 0.569427 | 1_4:+5402063 | None:intergenic |
| GTAGGTTGCAAGCACGGCAA+CGG | 0.571499 | 1_4:+5402867 | None:intergenic |
| GTGTTATCATGTTCATGTGA+AGG | 0.573567 | 1_4:+5402050 | None:intergenic |
| TCATTCTATACGGTCTTCCA+AGG | 0.573571 | 1_4:-5400911 | Msa0145700:intron |
| TTACATGCAGCCACAAGGGA+CGG | 0.574092 | 1_4:-5401890 | Msa0145700:intron |
| GCATCATATACATCTAAGAC+AGG | 0.574513 | 1_4:-5399982 | Msa0145700:CDS |
| GTTTCTAATCACAACAGGCT+AGG | 0.574749 | 1_4:+5399736 | None:intergenic |
| TCGCTCACAGCTACAACAGC+GGG | 0.574792 | 1_4:+5402025 | None:intergenic |
| TCTGATCATAAGGTTTCTGA+AGG | 0.579206 | 1_4:-5405933 | Msa0145700:CDS |
| AAGGACCCTTCACCATATCA+AGG | 0.581020 | 1_4:-5399833 | Msa0145700:CDS |
| CCGTCACCTTGATATGGTGA+AGG | 0.582188 | 1_4:+5399827 | None:intergenic |
| TTGGAGTCACCTCCCAAACA+TGG | 0.583689 | 1_4:-5404954 | Msa0145700:CDS |
| CTGTTGTAGCTGTGAGCGAA+TGG | 0.584516 | 1_4:-5402021 | Msa0145700:CDS |
| TGCAGACATCACATTTCGGA+TGG | 0.584761 | 1_4:+5402658 | None:intergenic |
| CTTCTTCCTCCTTCTTACGA+AGG | 0.587409 | 1_4:+5406703 | None:intergenic |
| TTCGCTCACAGCTACAACAG+CGG | 0.587961 | 1_4:+5402024 | None:intergenic |
| TGTCTTTCAACCAAAAGTAG+AGG | 0.588772 | 1_4:+5401724 | None:intergenic |
| ACTGAATGAAGCGAGGGAGG+GGG | 0.590431 | 1_4:-5401698 | Msa0145700:CDS |
| TCTCTTTACATGCAGCCACA+AGG | 0.590442 | 1_4:-5401895 | Msa0145700:intron |
| AGCACTGAATGAAGCGAGGG+AGG | 0.591672 | 1_4:-5401701 | Msa0145700:CDS |
| TGTTATCATGTTCATGTGAA+GGG | 0.592374 | 1_4:+5402051 | None:intergenic |
| TTATCATTTCCATGTTTGGG+AGG | 0.593608 | 1_4:+5404945 | None:intergenic |
| CTTCACCATATCAAGGTGAC+GGG | 0.594001 | 1_4:-5399826 | Msa0145700:CDS |
| ATATTGCCCATAAGGATGGA+AGG | 0.594506 | 1_4:-5401864 | Msa0145700:CDS |
| CGTCACCTTGATATGGTGAA+GGG | 0.595573 | 1_4:+5399828 | None:intergenic |
| CCAAGCTTCTTCTCAAAAGG+AGG | 0.596754 | 1_4:+5399952 | None:intergenic |
| AGATGATGCATGCATGGCTG+CGG | 0.598462 | 1_4:-5400328 | Msa0145700:CDS |
| TTACTTGCCATCAACTTCAG+GGG | 0.600696 | 1_4:-5405883 | Msa0145700:intron |
| CCTTCACCATATCAAGGTGA+CGG | 0.608624 | 1_4:-5399827 | Msa0145700:CDS |
| AGATTGGTAGGTTGCAAGCA+CGG | 0.611730 | 1_4:+5402861 | None:intergenic |
| AATCAATAATACTTGAGCAA+AGG | 0.612114 | 1_4:+5399644 | None:intergenic |
| CTCTTTACATGCAGCCACAA+GGG | 0.615445 | 1_4:-5401894 | Msa0145700:intron |
| TTGATTTGGAATACAAAGGG+GGG | 0.623107 | 1_4:+5406642 | None:intergenic |
| ATTGATTTGGAATACAAAGG+GGG | 0.628285 | 1_4:+5406641 | None:intergenic |
| CACCCAAGCAATTTAGATAG+CGG | 0.630015 | 1_4:+5402912 | None:intergenic |
| ATATGATGCAGATGAGGATG+AGG | 0.632065 | 1_4:+5399996 | None:intergenic |
| GACAAGCACTGAATGAAGCG+AGG | 0.639156 | 1_4:-5401705 | Msa0145700:CDS |
| ACAAGCACTGAATGAAGCGA+GGG | 0.649587 | 1_4:-5401704 | Msa0145700:CDS |
| TAAACCCATCTCCATAAACA+GGG | 0.651389 | 1_4:+5399893 | None:intergenic |
| GATTGATTTGGAATACAAAG+GGG | 0.657231 | 1_4:+5406640 | None:intergenic |
| TTCAGTATATCAGCATGAAG+GGG | 0.658616 | 1_4:+5401787 | None:intergenic |
| AGATGTATATGATGCAGATG+AGG | 0.664075 | 1_4:+5399990 | None:intergenic |
| CAATTCAGTATTTCCCGATG+GGG | 0.664407 | 1_4:-5404911 | Msa0145700:CDS |
| TTGTAGCTGTGAGCGAATGG+AGG | 0.666039 | 1_4:-5402018 | Msa0145700:intron |
| CAGAGGACTCTGCCTCTCAG+AGG | 0.667518 | 1_4:-5401275 | Msa0145700:CDS |
| GAAAGGGTAATTTCCAGACG+TGG | 0.673323 | 1_4:+5402707 | None:intergenic |
| CAGTGCTGAGTTCCTCTGAG+AGG | 0.678909 | 1_4:+5401263 | None:intergenic |
| TATCATATGCCTGAGACCAG+AGG | 0.682286 | 1_4:-5401292 | Msa0145700:CDS |
| GGTCTCCCTTCGTAAGAAGG+AGG | 0.683074 | 1_4:-5406709 | Msa0145700:five_prime_UTR |
| CCTGTTGTGATTAGAAACGG+AGG | 0.683136 | 1_4:-5399731 | Msa0145700:three_prime_UTR |
| TATATTCAATAAGACCAGCA+GGG | 0.688376 | 1_4:+5402105 | None:intergenic |
| CTGATCATAAGGTTTCTGAA+GGG | 0.689401 | 1_4:-5405932 | Msa0145700:CDS |
| AAACCCATCTCCATAAACAG+GGG | 0.693477 | 1_4:+5399894 | None:intergenic |
| TGTGTTGTGTGTGAACAAGG+AGG | 0.770683 | 1_4:-5406677 | Msa0145700:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGTTTTTTTTTTACTA+TGG | - | chr1_4:5401203-5401222 | Msa0145700:intron | 10.0% |
| !!! | TTTTGTTTTTTTTTTACTAT+GGG | - | chr1_4:5401204-5401223 | Msa0145700:intron | 10.0% |
| !!! | AAAAAACAAAAAATTGATTT+TGG | - | chr1_4:5401870-5401889 | Msa0145700:CDS | 10.0% |
| !!! | AAAAAACAAAAAAATGATTT+TGG | + | chr1_4:5402746-5402765 | None:intergenic | 10.0% |
| !! | AATCTAATTATTTACATAAT+AGG | - | chr1_4:5403385-5403404 | Msa0145700:intron | 10.0% |
| !! | TATATATTACCAAAAATTAA+CGG | + | chr1_4:5404207-5404226 | None:intergenic | 10.0% |
| !! | TAATATAAAAATATTTAAGC+TGG | + | chr1_4:5404368-5404387 | None:intergenic | 10.0% |
| !! | AATTAATAATTTGATTGTAA+CGG | - | chr1_4:5404728-5404747 | Msa0145700:intron | 10.0% |
| !! | TATATTTATATATGTATGTT+AGG | + | chr1_4:5405144-5405163 | None:intergenic | 10.0% |
| !!! | TTATTATTTAAAATCCAGTT+AGG | + | chr1_4:5399745-5399764 | None:intergenic | 15.0% |
| !! | CACAAAAAAAAAAAAAAAGA+GGG | + | chr1_4:5400156-5400175 | None:intergenic | 15.0% |
| !! | ACACAAAAAAAAAAAAAAAG+AGG | + | chr1_4:5400157-5400176 | None:intergenic | 15.0% |
| !!! | ATTAATTTTAGGGTTTATAT+TGG | + | chr1_4:5401180-5401199 | None:intergenic | 15.0% |
| !!! | TTGATTTTGGAAATTAAAAA+AGG | - | chr1_4:5401883-5401902 | Msa0145700:CDS | 15.0% |
| !!! | TGATTTTGGAAATTAAAAAA+GGG | - | chr1_4:5401884-5401903 | Msa0145700:intron | 15.0% |
| !! | AAAATAAACAGAAAATTGAT+GGG | + | chr1_4:5403274-5403293 | None:intergenic | 15.0% |
| !!! | TTTTACATATCAAAAAGTAA+AGG | + | chr1_4:5403797-5403816 | None:intergenic | 15.0% |
| !!! | TACTTTTTGATATGTAAAAA+TGG | - | chr1_4:5403798-5403817 | Msa0145700:intron | 15.0% |
| !! | CATTTATTTGATAAATTATG+TGG | + | chr1_4:5404842-5404861 | None:intergenic | 15.0% |
| !! | GTTGAACAAAAAATAAAAAA+AGG | - | chr1_4:5405743-5405762 | Msa0145700:CDS | 15.0% |
| !! | CTATTAAAATGAATAAATGA+TGG | + | chr1_4:5406150-5406169 | None:intergenic | 15.0% |
| !! | AAAATTGAAATAGTTTGGTT+TGG | + | chr1_4:5400026-5400045 | None:intergenic | 20.0% |
| !! | GTAACAAAATTGAAATAGTT+TGG | + | chr1_4:5400031-5400050 | None:intergenic | 20.0% |
| !!! | ATAGCTATTTTTTTGATTGA+TGG | - | chr1_4:5400373-5400392 | Msa0145700:intron | 20.0% |
| !!! | TAGCTATTTTTTTGATTGAT+GGG | - | chr1_4:5400374-5400393 | Msa0145700:intron | 20.0% |
| !! | TTTCTAAATGATTTCAAACA+TGG | + | chr1_4:5401146-5401165 | None:intergenic | 20.0% |
| !!! | GTTTGAAATCATTTAGAAAT+TGG | - | chr1_4:5401147-5401166 | Msa0145700:intron | 20.0% |
| !! | AATAGAAGAAAGTCTAAATT+TGG | - | chr1_4:5401382-5401401 | Msa0145700:intron | 20.0% |
| !! | AAAAATTACATTTACACACA+TGG | + | chr1_4:5401850-5401869 | None:intergenic | 20.0% |
| !!! | ATTTTGGAAATTAAGAGAAA+AGG | + | chr1_4:5402730-5402749 | None:intergenic | 20.0% |
| !! | AATTTATGAACAAATAACCA+TGG | - | chr1_4:5403153-5403172 | Msa0145700:intron | 20.0% |
| !! | ATTTATGAACAAATAACCAT+GGG | - | chr1_4:5403154-5403173 | Msa0145700:intron | 20.0% |
| !! | GAAAATAAACAGAAAATTGA+TGG | + | chr1_4:5403275-5403294 | None:intergenic | 20.0% |
| !! | ATTATTCTATTATTTCAGCT+TGG | - | chr1_4:5403308-5403327 | Msa0145700:intron | 20.0% |
| !! | ATTAAAATGAGAAATTTGAC+TGG | + | chr1_4:5403550-5403569 | None:intergenic | 20.0% |
| !!! | CATTTTAATGTTTTTGTAAC+TGG | - | chr1_4:5403561-5403580 | Msa0145700:intron | 20.0% |
| !! | AGAATGTAAAAAGTTGTTAA+GGG | + | chr1_4:5403742-5403761 | None:intergenic | 20.0% |
| !! | AAGAATGTAAAAAGTTGTTA+AGG | + | chr1_4:5403743-5403762 | None:intergenic | 20.0% |
| !!! | TTTTGATATGTAAAAATGGA+TGG | - | chr1_4:5403802-5403821 | Msa0145700:intron | 20.0% |
| !! | TTTGATATGTAAAAATGGAT+GGG | - | chr1_4:5403803-5403822 | Msa0145700:intron | 20.0% |
| !! | AATAAACATCATGAATGAAA+TGG | + | chr1_4:5404104-5404123 | None:intergenic | 20.0% |
| !! | TCCATGTTACAATTAAATTA+AGG | - | chr1_4:5404129-5404148 | Msa0145700:intron | 20.0% |
| !! | AAATCTAACACTAACAAAAA+TGG | + | chr1_4:5404790-5404809 | None:intergenic | 20.0% |
| !! | AGATACAAACAAATCTAATT+TGG | - | chr1_4:5404906-5404925 | Msa0145700:CDS | 20.0% |
| !! | TATTACTTATTACAAGCATT+AGG | + | chr1_4:5404935-5404954 | None:intergenic | 20.0% |
| !! | ATATAAATATATAAGCGACA+TGG | - | chr1_4:5405153-5405172 | Msa0145700:intron | 20.0% |
| !! | AAAACATCAAATTATTACCT+TGG | + | chr1_4:5405464-5405483 | None:intergenic | 20.0% |
| !! | ACAAACGTAAAATATTATCT+GGG | + | chr1_4:5405546-5405565 | None:intergenic | 20.0% |
| !! | AACCTTCATATATACAAAAT+TGG | + | chr1_4:5406234-5406253 | None:intergenic | 20.0% |
| !!! | TTTGTATATATGAAGGTTTT+CGG | - | chr1_4:5406236-5406255 | Msa0145700:intron | 20.0% |
| !! | GAGATATCTATACTTAATAT+GGG | + | chr1_4:5406561-5406580 | None:intergenic | 20.0% |
| !!! | AGATTGATTTGGAATACAAA+GGG | + | chr1_4:5399719-5399738 | None:intergenic | 25.0% |
| !! | TTATTTAAAATCCAGTTAGG+AGG | + | chr1_4:5399742-5399761 | None:intergenic | 25.0% |
| ! | ATGAATAAATGTGAAGAAGA+GGG | + | chr1_4:5399844-5399863 | None:intergenic | 25.0% |
| ! | AATGAATAAATGTGAAGAAG+AGG | + | chr1_4:5399845-5399864 | None:intergenic | 25.0% |
| !!! | TCAATTTTTCAAATTACCAC+CGG | - | chr1_4:5400230-5400249 | Msa0145700:intron | 25.0% |
| !!! | TATTTTTTTGATTGATGGGT+TGG | - | chr1_4:5400378-5400397 | Msa0145700:intron | 25.0% |
| !! | TGGCTTAGTAGAATTTTTAA+AGG | - | chr1_4:5400398-5400417 | Msa0145700:intron | 25.0% |
| !! | GGCTTAGTAGAATTTTTAAA+GGG | - | chr1_4:5400399-5400418 | Msa0145700:intron | 25.0% |
| ! | CTTGTTAATGCAATTTGTAA+TGG | - | chr1_4:5400497-5400516 | Msa0145700:intron | 25.0% |
| !!! | ATGGTTTAGAATTTTTTGTC+TGG | - | chr1_4:5400516-5400535 | Msa0145700:intron | 25.0% |
| ! | CAGAAAGTGAAAAATGTAAA+AGG | - | chr1_4:5400680-5400699 | Msa0145700:intron | 25.0% |
| ! | AATCACAATTCGATGATAAA+AGG | + | chr1_4:5400896-5400915 | None:intergenic | 25.0% |
| ! | TTTATCATCGAATTGTGATT+AGG | - | chr1_4:5400896-5400915 | Msa0145700:intron | 25.0% |
| ! | ATTTCATGCTTGAATGTAAT+AGG | - | chr1_4:5400986-5401005 | Msa0145700:intron | 25.0% |
| ! | ATGATAACTGATAGTAAATG+TGG | - | chr1_4:5401009-5401028 | Msa0145700:intron | 25.0% |
| ! | GATATTGTAGCTATCATATA+CGG | + | chr1_4:5401088-5401107 | None:intergenic | 25.0% |
| ! | ATGTTATCATTTCCATGTTT+GGG | + | chr1_4:5401416-5401435 | None:intergenic | 25.0% |
| !! | ATGAATCATCAAGGATATTT+TGG | - | chr1_4:5401557-5401576 | Msa0145700:intron | 25.0% |
| !!! | GAATGTAGCTTTAAAAAAAC+TGG | - | chr1_4:5401613-5401632 | Msa0145700:intron | 25.0% |
| ! | ATCGCTCAATTAAAAACATA+GGG | + | chr1_4:5401728-5401747 | None:intergenic | 25.0% |
| ! | AATCGCTCAATTAAAAACAT+AGG | + | chr1_4:5402887-5402906 | None:intergenic | 25.0% |
| ! | AAATCGCTCAATTAAAAACA+TGG | - | chr1_4:5402886-5402905 | Msa0145700:CDS | 25.0% |
| ! | AATCGCTCAATTAAAAACAT+GGG | - | chr1_4:5402887-5402906 | Msa0145700:CDS | 25.0% |
| ! | ATTTGAAGAGGATAAAAAGA+AGG | + | chr1_4:5402970-5402989 | None:intergenic | 25.0% |
| ! | TTTATGAACAAATAACCATG+GGG | - | chr1_4:5403155-5403174 | Msa0145700:intron | 25.0% |
| ! | ATTCAATGCTCATAAACAAA+GGG | - | chr1_4:5403236-5403255 | Msa0145700:intron | 25.0% |
| !!! | TTCTGTTTATTTTCAGTTGA+TGG | - | chr1_4:5403281-5403300 | Msa0145700:intron | 25.0% |
| ! | GAATGTAAAAAGTTGTTAAG+GGG | + | chr1_4:5403741-5403760 | None:intergenic | 25.0% |
| ! | TTGATATGTAAAAATGGATG+GGG | - | chr1_4:5403804-5403823 | Msa0145700:intron | 25.0% |
| ! | CTAGTATCTAAATTAGCATT+TGG | + | chr1_4:5403893-5403912 | None:intergenic | 25.0% |
| ! | GCCTTAATTTAATTGTAACA+TGG | + | chr1_4:5404133-5404152 | None:intergenic | 25.0% |
| ! | TATTAATCATATGCTTGCTT+AGG | - | chr1_4:5404383-5404402 | Msa0145700:intron | 25.0% |
| ! | ATTAATCATATGCTTGCTTA+GGG | - | chr1_4:5404384-5404403 | Msa0145700:intron | 25.0% |
| !! | GTAAGTTGAATGAAAATGTA+TGG | - | chr1_4:5404406-5404425 | Msa0145700:intron | 25.0% |
| !!! | CTTGATATTTTAGAGCATTT+TGG | + | chr1_4:5404967-5404986 | None:intergenic | 25.0% |
| ! | CTTAACTAGTTCACAATTAA+AGG | - | chr1_4:5404995-5405014 | Msa0145700:CDS | 25.0% |
| ! | ATCTTATTCTTTATCTTCAC+AGG | - | chr1_4:5405035-5405054 | Msa0145700:intron | 25.0% |
| ! | TCTTATTCTTTATCTTCACA+GGG | - | chr1_4:5405036-5405055 | Msa0145700:intron | 25.0% |
| ! | TTATATATGTATGTTAGGAC+AGG | + | chr1_4:5405139-5405158 | None:intergenic | 25.0% |
| ! | TCATTTATGATAAGATCCAA+CGG | - | chr1_4:5405199-5405218 | Msa0145700:intron | 25.0% |
| ! | TGAAAACTGATCAAGTTTAA+AGG | + | chr1_4:5405339-5405358 | None:intergenic | 25.0% |
| ! | GACAAACGTAAAATATTATC+TGG | + | chr1_4:5405547-5405566 | None:intergenic | 25.0% |
| ! | ACATAGCTGAATAAAAAAAG+AGG | - | chr1_4:5405624-5405643 | Msa0145700:intron | 25.0% |
| ! | CTAGATGAATACCAATAAAA+AGG | + | chr1_4:5406079-5406098 | None:intergenic | 25.0% |
| !!! | AATCCCATTTTATTTCATTG+CGG | - | chr1_4:5406192-5406211 | Msa0145700:intron | 25.0% |
| !! | TGCCAATTTTGTATATATGA+AGG | - | chr1_4:5406229-5406248 | Msa0145700:intron | 25.0% |
| ! | GGAGATATCTATACTTAATA+TGG | + | chr1_4:5406562-5406581 | None:intergenic | 25.0% |
| ! | TGAGAAACAATGAGATAAAT+GGG | + | chr1_4:5406583-5406602 | None:intergenic | 25.0% |
| ! | ATGAGAAACAATGAGATAAA+TGG | + | chr1_4:5406584-5406603 | None:intergenic | 25.0% |
| ! | AATCAATAATACTTGAGCAA+AGG | + | chr1_4:5406714-5406733 | None:intergenic | 25.0% |
| !! | ATTGATTTGGAATACAAAGG+GGG | + | chr1_4:5399717-5399736 | None:intergenic | 30.0% |
| !! | GATTGATTTGGAATACAAAG+GGG | + | chr1_4:5399718-5399737 | None:intergenic | 30.0% |
| !! | GAGATTGATTTGGAATACAA+AGG | + | chr1_4:5399720-5399739 | None:intergenic | 30.0% |
| !! | TGAAATAGTTTGGTTTGGTT+TGG | + | chr1_4:5400021-5400040 | None:intergenic | 30.0% |
| AAAAAAAAAGAGGGTTTAGC+AGG | + | chr1_4:5400147-5400166 | None:intergenic | 30.0% | |
| ATGTTGATGTTTATTTGTGC+AGG | - | chr1_4:5400327-5400346 | Msa0145700:CDS | 30.0% | |
| TGTTGATGTTTATTTGTGCA+GGG | - | chr1_4:5400328-5400347 | Msa0145700:CDS | 30.0% | |
| !! | TTTTAAAGGGTCTGATCATA+AGG | - | chr1_4:5400412-5400431 | Msa0145700:intron | 30.0% |
| !!! | TAGAATTTTTTGTCTGGTGT+TGG | - | chr1_4:5400522-5400541 | Msa0145700:intron | 30.0% |
| !!! | TTTGATAGGGTTTTGAATGT+AGG | - | chr1_4:5400589-5400608 | Msa0145700:intron | 30.0% |
| GATTATTGCATCTTCTTGAA+AGG | - | chr1_4:5400723-5400742 | Msa0145700:intron | 30.0% | |
| CTGAGATTGAAGTTAAGTTA+TGG | - | chr1_4:5400784-5400803 | Msa0145700:intron | 30.0% | |
| AAAGGAGAAATGGAAAAAAC+AGG | + | chr1_4:5400878-5400897 | None:intergenic | 30.0% | |
| TTCGATGATAAAAGGAGAAA+TGG | + | chr1_4:5400888-5400907 | None:intergenic | 30.0% | |
| GAAATTCAATAGTAAGCAAC+TGG | + | chr1_4:5400971-5400990 | None:intergenic | 30.0% | |
| GGAATTTCTGCTTATATTGA+TGG | - | chr1_4:5401225-5401244 | Msa0145700:intron | 30.0% | |
| CTTCTTCTAATTGTGATTTG+TGG | + | chr1_4:5401343-5401362 | None:intergenic | 30.0% | |
| CATGTTATCATTTCCATGTT+TGG | + | chr1_4:5401417-5401436 | None:intergenic | 30.0% | |
| GATGATCTTATGAATCATCA+AGG | - | chr1_4:5401548-5401567 | Msa0145700:intron | 30.0% | |
| !!! | ATCATCAAGGATATTTTGGT+AGG | - | chr1_4:5401561-5401580 | Msa0145700:intron | 30.0% |
| ! | ATACACTGTTCGTTCTTTTT+AGG | - | chr1_4:5401653-5401672 | Msa0145700:intron | 30.0% |
| ACATCATCACTAAAACACAT+GGG | + | chr1_4:5402825-5402844 | None:intergenic | 30.0% | |
| TCTCAACAATAAGTGAAGAT+TGG | - | chr1_4:5402569-5402588 | Msa0145700:intron | 30.0% | |
| TCTCAACAATAAGTGAAGAT+TGG | - | chr1_4:5402569-5402588 | Msa0145700:intron | 30.0% | |
| ACATCATCACTAAAACACAT+GGG | - | chr1_4:5402825-5402844 | Msa0145700:intron | 30.0% | |
| ! | TTAGTACAAGGTATTTGAAG+AGG | + | chr1_4:5402982-5403001 | None:intergenic | 30.0% |
| CATTCAATGCTCATAAACAA+AGG | - | chr1_4:5403235-5403254 | Msa0145700:intron | 30.0% | |
| TTACATAATAGGATATGTGC+TGG | - | chr1_4:5403396-5403415 | Msa0145700:intron | 30.0% | |
| ! | TGGTTTTTATTCTGTACTCA+AGG | - | chr1_4:5403581-5403600 | Msa0145700:intron | 30.0% |
| ! | TCTGTACTCAAGGTTTTTAT+TGG | - | chr1_4:5403591-5403610 | Msa0145700:intron | 30.0% |
| TATAGCATGCTTTATGGAAA+GGG | + | chr1_4:5403667-5403686 | None:intergenic | 30.0% | |
| TTATAGCATGCTTTATGGAA+AGG | + | chr1_4:5403668-5403687 | None:intergenic | 30.0% | |
| TTTCCATAAAGCATGCTATA+AGG | - | chr1_4:5403667-5403686 | Msa0145700:intron | 30.0% | |
| TTTCCTTATAGCATGCTTTA+TGG | + | chr1_4:5403673-5403692 | None:intergenic | 30.0% | |
| ATCTAAATTAGCATTTGGCA+TGG | + | chr1_4:5403888-5403907 | None:intergenic | 30.0% | |
| TATATTCAATAAGACCAGCA+GGG | + | chr1_4:5404253-5404272 | None:intergenic | 30.0% | |
| !! | TGCTGGTCTTATTGAATATA+GGG | - | chr1_4:5404253-5404272 | Msa0145700:intron | 30.0% |
| TGTTATCATGTTCATGTGAA+GGG | + | chr1_4:5404307-5404326 | None:intergenic | 30.0% | |
| !!! | TTCTGAGGAACTATTTTTTG+TGG | - | chr1_4:5404761-5404780 | Msa0145700:intron | 30.0% |
| GATTTGAAAATGCTATTCTC+TGG | - | chr1_4:5404805-5404824 | Msa0145700:intron | 30.0% | |
| !!! | TATTTTAGAGCATTTTGGCA+GGG | + | chr1_4:5404962-5404981 | None:intergenic | 30.0% |
| !!! | ATATTTTAGAGCATTTTGGC+AGG | + | chr1_4:5404963-5404982 | None:intergenic | 30.0% |
| AGATAAAGAATAAGATACGC+AGG | + | chr1_4:5405031-5405050 | None:intergenic | 30.0% | |
| ACTGCAATTCTCATTCTATA+CGG | - | chr1_4:5405434-5405453 | Msa0145700:intron | 30.0% | |
| ACCTCACAAAATATCTACAA+CGG | + | chr1_4:5405882-5405901 | None:intergenic | 30.0% | |
| TTCTTTCACAGATTACTTAC+CGG | - | chr1_4:5405987-5406006 | Msa0145700:five_prime_UTR | 30.0% | |
| ! | CTTTCTCGATTCCTTTTTAT+TGG | - | chr1_4:5406065-5406084 | Msa0145700:intron | 30.0% |
| !!! | TTTGTGTTGGGTTTTGGTTT+TGG | - | chr1_4:5399623-5399642 | Msa0145700:three_prime_UTR | 35.0% |
| !!! | TTGTGTTGGGTTTTGGTTTT+GGG | - | chr1_4:5399624-5399643 | Msa0145700:three_prime_UTR | 35.0% |
| !! | TTGATTTGGAATACAAAGGG+GGG | + | chr1_4:5399716-5399735 | None:intergenic | 35.0% |
| GTGAAGTGTGTGATCTAATT+TGG | + | chr1_4:5399991-5400010 | None:intergenic | 35.0% | |
| !! | TAGTTTGGTTTGGTTTGGTT+TGG | + | chr1_4:5400016-5400035 | None:intergenic | 35.0% |
| CTTCTGCAATTTCTTAACAC+AGG | - | chr1_4:5400067-5400086 | Msa0145700:CDS | 35.0% | |
| TCTGATCATAAGGTTTCTGA+AGG | - | chr1_4:5400422-5400441 | Msa0145700:intron | 35.0% | |
| CTGATCATAAGGTTTCTGAA+GGG | - | chr1_4:5400423-5400442 | Msa0145700:intron | 35.0% | |
| TATTACTTGCCATCAACTTC+AGG | - | chr1_4:5400470-5400489 | Msa0145700:intron | 35.0% | |
| ATTACTTGCCATCAACTTCA+GGG | - | chr1_4:5400471-5400490 | Msa0145700:intron | 35.0% | |
| !!! | GGTTTTGAATGTAGGATGAT+TGG | - | chr1_4:5400597-5400616 | Msa0145700:intron | 35.0% |
| TGCATCTTCTTGAAAGGATA+TGG | - | chr1_4:5400729-5400748 | Msa0145700:intron | 35.0% | |
| ! | TCTTGAAAGGATATGGATTG+CGG | - | chr1_4:5400736-5400755 | Msa0145700:intron | 35.0% |
| ! | ATAGTAAGCAACTGGTTTCT+TGG | + | chr1_4:5400963-5400982 | None:intergenic | 35.0% |
| TAGACTTTCTTCTATTGCTC+TGG | + | chr1_4:5401378-5401397 | None:intergenic | 35.0% | |
| TTATCATTTCCATGTTTGGG+AGG | + | chr1_4:5401413-5401432 | None:intergenic | 35.0% | |
| !!! | TCAAGGATATTTTGGTAGGA+AGG | - | chr1_4:5401565-5401584 | Msa0145700:intron | 35.0% |
| !!! | CAAGGATATTTTGGTAGGAA+GGG | - | chr1_4:5401566-5401585 | Msa0145700:intron | 35.0% |
| !!! | AAGGATATTTTGGTAGGAAG+GGG | - | chr1_4:5401567-5401586 | Msa0145700:intron | 35.0% |
| ACAATTGACAAAAGATAGGG+GGG | + | chr1_4:5401694-5401713 | None:intergenic | 35.0% | |
| CACAATTGACAAAAGATAGG+GGG | + | chr1_4:5401695-5401714 | None:intergenic | 35.0% | |
| GCACAATTGACAAAAGATAG+GGG | + | chr1_4:5401696-5401715 | None:intergenic | 35.0% | |
| CGCACAATTGACAAAAGATA+GGG | + | chr1_4:5401697-5401716 | None:intergenic | 35.0% | |
| TCGCACAATTGACAAAAGAT+AGG | + | chr1_4:5402918-5402937 | None:intergenic | 35.0% | |
| ATCATCACTAAAACACATGG+GGG | + | chr1_4:5402827-5402846 | None:intergenic | 35.0% | |
| CATCATCACTAAAACACATG+GGG | + | chr1_4:5402826-5402845 | None:intergenic | 35.0% | |
| CACATCATCACTAAAACACA+TGG | + | chr1_4:5402824-5402843 | None:intergenic | 35.0% | |
| ! | GTAGAATTTGAAACCTGCAA+TGG | + | chr1_4:5401975-5401994 | None:intergenic | 35.0% |
| GTGGTATAGTTTGAAGGAAT+TGG | - | chr1_4:5402300-5402319 | Msa0145700:intron | 35.0% | |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr1_4:5402368-5402387 | None:intergenic | 35.0% |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr1_4:5402367-5402386 | Msa0145700:intron | 35.0% | |
| CACATCATCACTAAAACACA+TGG | - | chr1_4:5402824-5402843 | Msa0145700:intron | 35.0% | |
| CATCATCACTAAAACACATG+GGG | - | chr1_4:5402826-5402845 | Msa0145700:intron | 35.0% | |
| ATCATCACTAAAACACATGG+GGG | - | chr1_4:5402827-5402846 | Msa0145700:intron | 35.0% | |
| TCGCACAATTGACAAAAGAT+TGG | - | chr1_4:5402918-5402937 | Msa0145700:CDS | 35.0% | |
| CGCACAATTGACAAAAGATT+GGG | - | chr1_4:5402919-5402938 | Msa0145700:CDS | 35.0% | |
| GCACAATTGACAAAAGATTG+GGG | - | chr1_4:5402920-5402939 | Msa0145700:CDS | 35.0% | |
| CACAATTGACAAAAGATTGG+GGG | - | chr1_4:5402921-5402940 | Msa0145700:CDS | 35.0% | |
| ACAATTGACAAAAGATTGGG+GGG | - | chr1_4:5402922-5402941 | Msa0145700:CDS | 35.0% | |
| TTTGTGCAGCAGTCTATATT+CGG | + | chr1_4:5403012-5403031 | None:intergenic | 35.0% | |
| TAAGTTCCGTATCCAAAGAA+GGG | - | chr1_4:5403188-5403207 | Msa0145700:intron | 35.0% | |
| TACAAAAGCTATCCCTTCTT+TGG | + | chr1_4:5403203-5403222 | None:intergenic | 35.0% | |
| ! | TGCAATACTGAGATTGGTTA+TGG | - | chr1_4:5403420-5403439 | Msa0145700:intron | 35.0% |
| ! | TGAGAAATTTGACTGGTCAA+AGG | + | chr1_4:5403543-5403562 | None:intergenic | 35.0% |
| GGAAAACGTTATCCAGATTA+CGG | - | chr1_4:5403832-5403851 | Msa0145700:intron | 35.0% | |
| TTATCCAGATTACGGTCTTA+TGG | - | chr1_4:5403840-5403859 | Msa0145700:intron | 35.0% | |
| ! | TATCCAGATTACGGTCTTAT+GGG | - | chr1_4:5403841-5403860 | Msa0145700:intron | 35.0% |
| TTGGCATGGTTATACTCATA+AGG | + | chr1_4:5403874-5403893 | None:intergenic | 35.0% | |
| ! | TCTGAACAAGCTTTTATCTC+TGG | - | chr1_4:5403986-5404005 | Msa0145700:intron | 35.0% |
| ! | CTGAACAAGCTTTTATCTCT+GGG | - | chr1_4:5403987-5404006 | Msa0145700:intron | 35.0% |
| GCATTTCTTATACCTGCAAT+TGG | - | chr1_4:5404053-5404072 | Msa0145700:intron | 35.0% | |
| TTTCTTATACCTGCAATTGG+AGG | - | chr1_4:5404056-5404075 | Msa0145700:intron | 35.0% | |
| TTCTTATACCTGCAATTGGA+GGG | - | chr1_4:5404057-5404076 | Msa0145700:intron | 35.0% | |
| TACCAAAAATTAACGGCAAC+AGG | + | chr1_4:5404200-5404219 | None:intergenic | 35.0% | |
| CTATATTCAATAAGACCAGC+AGG | + | chr1_4:5404254-5404273 | None:intergenic | 35.0% | |
| !! | CTGCTGGTCTTATTGAATAT+AGG | - | chr1_4:5404252-5404271 | Msa0145700:intron | 35.0% |
| !! | AATAATGCTGGTTCCAGAAT+GGG | + | chr1_4:5404283-5404302 | None:intergenic | 35.0% |
| GTGTTATCATGTTCATGTGA+AGG | + | chr1_4:5404308-5404327 | None:intergenic | 35.0% | |
| TTCAGTATATCAGCATGAAG+GGG | + | chr1_4:5404571-5404590 | None:intergenic | 35.0% | |
| CTTCAGTATATCAGCATGAA+GGG | + | chr1_4:5404572-5404591 | None:intergenic | 35.0% | |
| ACTTCAGTATATCAGCATGA+AGG | + | chr1_4:5404573-5404592 | None:intergenic | 35.0% | |
| TGTCTTTCAACCAAAAGTAG+AGG | + | chr1_4:5404634-5404653 | None:intergenic | 35.0% | |
| !! | AACGGCATTAATTTGTTCTG+AGG | - | chr1_4:5404746-5404765 | Msa0145700:intron | 35.0% |
| !!! | ATTTTAGAGCATTTTGGCAG+GGG | + | chr1_4:5404961-5404980 | None:intergenic | 35.0% |
| !! | TTTTCAAGAAGACCTAGACT+CGG | - | chr1_4:5405353-5405372 | Msa0145700:intron | 35.0% |
| ! | TCCGTTGTAGATATTTTGTG+AGG | - | chr1_4:5405878-5405897 | Msa0145700:intron | 35.0% |
| CAGCCGCAATGAAATAAAAT+GGG | + | chr1_4:5406198-5406217 | None:intergenic | 35.0% | |
| ACAGCCGCAATGAAATAAAA+TGG | + | chr1_4:5406199-5406218 | None:intergenic | 35.0% | |
| CTAAGTCAAGATGTTGAAGA+AGG | - | chr1_4:5406262-5406281 | Msa0145700:intron | 35.0% | |
| !! | TGTTGAAGAAGGTATTTGTC+AGG | - | chr1_4:5406273-5406292 | Msa0145700:intron | 35.0% |
| !!! | AGAAGGTATTTGTCAGGTTT+TGG | - | chr1_4:5406279-5406298 | Msa0145700:intron | 35.0% |
| AGATGTATATGATGCAGATG+AGG | + | chr1_4:5406368-5406387 | None:intergenic | 35.0% | |
| ! | GCATCATATACATCTAAGAC+AGG | - | chr1_4:5406373-5406392 | Msa0145700:five_prime_UTR | 35.0% |
| TAAACCCATCTCCATAAACA+GGG | + | chr1_4:5406465-5406484 | None:intergenic | 35.0% | |
| TAGCCTGTTGTGATTAGAAA+CGG | - | chr1_4:5406621-5406640 | Msa0145700:five_prime_UTR | 35.0% | |
| TACAAAAAAATCAGCACTGC+TGG | + | chr1_4:5406674-5406693 | None:intergenic | 35.0% | |
| !!! | TGTGTTGGGTTTTGGTTTTG+GGG | - | chr1_4:5399625-5399644 | Msa0145700:three_prime_UTR | 40.0% |
| TTCTTCCTCCTTCTTACGAA+GGG | + | chr1_4:5399654-5399673 | None:intergenic | 40.0% | |
| CAGTTAGGAGGAGATTGATT+TGG | + | chr1_4:5399730-5399749 | None:intergenic | 40.0% | |
| CAAATCAATCTCCTCCTAAC+TGG | - | chr1_4:5399728-5399747 | Msa0145700:three_prime_UTR | 40.0% | |
| AAGACATGAACATCTTGTCG+CGG | - | chr1_4:5400177-5400196 | Msa0145700:intron | 40.0% | |
| TGATGTTTATTTGTGCAGGG+AGG | - | chr1_4:5400331-5400350 | Msa0145700:CDS | 40.0% | |
| TTACTTGCCATCAACTTCAG+GGG | - | chr1_4:5400472-5400491 | Msa0145700:intron | 40.0% | |
| !!! | ATTGTGTCGCGTGTTTTGAT+AGG | - | chr1_4:5400575-5400594 | Msa0145700:intron | 40.0% |
| !!! | TTGTGTCGCGTGTTTTGATA+GGG | - | chr1_4:5400576-5400595 | Msa0145700:intron | 40.0% |
| CTGGTTTCTTGGTTGATCAA+AGG | + | chr1_4:5400952-5400971 | None:intergenic | 40.0% | |
| ! | GTGATTTGTGGTCTGTAAGA+TGG | + | chr1_4:5401331-5401350 | None:intergenic | 40.0% |
| ACCAATTCAGTATTTCCCGA+TGG | - | chr1_4:5401442-5401461 | Msa0145700:intron | 40.0% | |
| CCAATTCAGTATTTCCCGAT+GGG | - | chr1_4:5401443-5401462 | Msa0145700:intron | 40.0% | |
| CAATTCAGTATTTCCCGATG+GGG | - | chr1_4:5401444-5401463 | Msa0145700:intron | 40.0% | |
| CAGAAAAGGGGAAAAAGATG+GGG | + | chr1_4:5401757-5401776 | None:intergenic | 40.0% | |
| CCAGAAAAGGGGAAAAAGAT+GGG | + | chr1_4:5401758-5401777 | None:intergenic | 40.0% | |
| ACCAGAAAAGGGGAAAAAGA+TGG | + | chr1_4:5401759-5401778 | None:intergenic | 40.0% | |
| !!! | TTTCCCCTTTTCTGGTTTGA+AGG | - | chr1_4:5401763-5401782 | Msa0145700:CDS | 40.0% |
| ! | GAATTTGAAACCTGCAATGG+AGG | + | chr1_4:5401972-5401991 | None:intergenic | 40.0% |
| !! | TCTTCTTTGAGGTTCTGTTC+CGG | + | chr1_4:5402084-5402103 | None:intergenic | 40.0% |
| ! | ACGCATTTTGCTCTTCTTTG+AGG | + | chr1_4:5402095-5402114 | None:intergenic | 40.0% |
| CACAATTCCACTCGTTTCTA+AGG | - | chr1_4:5402135-5402154 | Msa0145700:intron | 40.0% | |
| ATCAAGATCGAACACGTTGA+CGG | - | chr1_4:5402172-5402191 | Msa0145700:intron | 40.0% | |
| AATTGGAGAATGTGACCGTA+AGG | - | chr1_4:5402317-5402336 | Msa0145700:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | chr1_4:5402361-5402380 | Msa0145700:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | chr1_4:5402362-5402381 | Msa0145700:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr1_4:5402393-5402412 | Msa0145700:intron | 40.0% | |
| ! | GAATGTGACAGATGGATTTG+CGG | - | chr1_4:5402462-5402481 | Msa0145700:intron | 40.0% |
| ATGATAGGAGAAGGAGGATA+TGG | - | chr1_4:5402493-5402512 | Msa0145700:intron | 40.0% | |
| GGATATGGAATTGTATGCAG+AGG | - | chr1_4:5402508-5402527 | Msa0145700:intron | 40.0% | |
| TGCAGAGGAATTCTTCAAGA+TGG | - | chr1_4:5402523-5402542 | Msa0145700:intron | 40.0% | |
| CAATTGACAAAAGATTGGGG+GGG | - | chr1_4:5402923-5402942 | Msa0145700:CDS | 40.0% | |
| AATTGACAAAAGATTGGGGG+GGG | - | chr1_4:5402924-5402943 | Msa0145700:CDS | 40.0% | |
| TTCGGCTAGTGTTTAGTACA+AGG | + | chr1_4:5402994-5403013 | None:intergenic | 40.0% | |
| CACGCACACGTATAAATAAC+AGG | + | chr1_4:5403047-5403066 | None:intergenic | 40.0% | |
| ATTTGCCAAGTCAGAAAGTG+TGG | - | chr1_4:5403089-5403108 | Msa0145700:intron | 40.0% | |
| ! | TTTGCCAAGTCAGAAAGTGT+GGG | - | chr1_4:5403090-5403109 | Msa0145700:intron | 40.0% |
| ACTTAGTTCATAGTACCCCA+TGG | + | chr1_4:5403173-5403192 | None:intergenic | 40.0% | |
| CTAAGTTCCGTATCCAAAGA+AGG | - | chr1_4:5403187-5403206 | Msa0145700:intron | 40.0% | |
| AGCTATCCCTTCTTTGGATA+CGG | + | chr1_4:5403197-5403216 | None:intergenic | 40.0% | |
| ATGTAATGCAGACTCAGTTG+TGG | - | chr1_4:5403356-5403375 | Msa0145700:intron | 40.0% | |
| CACCCAAGCAATTTAGATAG+CGG | + | chr1_4:5403446-5403465 | None:intergenic | 40.0% | |
| TAAATTGCTTGGGTGCATTC+TGG | - | chr1_4:5403451-5403470 | Msa0145700:intron | 40.0% | |
| CCTCATAATCAGAGATTGGT+AGG | + | chr1_4:5403509-5403528 | None:intergenic | 40.0% | |
| CCTACCAATCTCTGATTATG+AGG | - | chr1_4:5403506-5403525 | Msa0145700:intron | 40.0% | |
| TGCACCTCATAATCAGAGAT+TGG | + | chr1_4:5403513-5403532 | None:intergenic | 40.0% | |
| CGTGGAAAACTACAAAAGCA+AGG | + | chr1_4:5403633-5403652 | None:intergenic | 40.0% | |
| ! | CTTTTGTAGTTTTCCACGTC+TGG | - | chr1_4:5403635-5403654 | Msa0145700:intron | 40.0% |
| TGCTTGCAGACATCACATTT+CGG | + | chr1_4:5403704-5403723 | None:intergenic | 40.0% | |
| GGCAAACGAAAGTCTATGAT+AGG | + | chr1_4:5403776-5403795 | None:intergenic | 40.0% | |
| GTAAAAATGGATGGGGAGAA+TGG | - | chr1_4:5403811-5403830 | Msa0145700:intron | 40.0% | |
| ! | GTAGATTGTTTTCCTGTTCC+TGG | - | chr1_4:5403924-5403943 | Msa0145700:intron | 40.0% |
| GAGATATATGTCTGCAGTCA+AGG | + | chr1_4:5404173-5404192 | None:intergenic | 40.0% | |
| GACTGCAGACATATATCTCA+TGG | - | chr1_4:5404174-5404193 | Msa0145700:intron | 40.0% | |
| !! | CAATAATGCTGGTTCCAGAA+TGG | + | chr1_4:5404284-5404303 | None:intergenic | 40.0% |
| GGATATATTGCCCATAAGGA+TGG | - | chr1_4:5404487-5404506 | Msa0145700:intron | 40.0% | |
| ATATTGCCCATAAGGATGGA+AGG | - | chr1_4:5404491-5404510 | Msa0145700:intron | 40.0% | |
| ! | TCAGCAAGTTCCTCTACTTT+TGG | - | chr1_4:5404621-5404640 | Msa0145700:intron | 40.0% |
| TTAGGACAGGAGAACATAAC+AGG | + | chr1_4:5405126-5405145 | None:intergenic | 40.0% | |
| GAAGAGTTAATCTTGACCGT+TGG | + | chr1_4:5405218-5405237 | None:intergenic | 40.0% | |
| TCATTCTATACGGTCTTCCA+AGG | - | chr1_4:5405444-5405463 | Msa0145700:intron | 40.0% | |
| !!! | CAGAAGCACTGTGTTTTACA+TGG | - | chr1_4:5405566-5405585 | Msa0145700:intron | 40.0% |
| TTCACAAAAGCTAAACCCCA+TGG | + | chr1_4:5405676-5405695 | None:intergenic | 40.0% | |
| AGAACGCAAAGGTTCTATCA+TGG | + | chr1_4:5405704-5405723 | None:intergenic | 40.0% | |
| CTAACTGCAAAAGAACGCAA+AGG | + | chr1_4:5405715-5405734 | None:intergenic | 40.0% | |
| ! | CTTTGCGTTCTTTTGCAGTT+AGG | - | chr1_4:5405713-5405732 | Msa0145700:CDS | 40.0% |
| ! | CGTTCTTTTGCAGTTAGGAA+AGG | - | chr1_4:5405718-5405737 | Msa0145700:CDS | 40.0% |
| AAGATGCTGATGCGATAAGA+GGG | + | chr1_4:5405917-5405936 | None:intergenic | 40.0% | |
| AAAGATGCTGATGCGATAAG+AGG | + | chr1_4:5405918-5405937 | None:intergenic | 40.0% | |
| ! | AAATTGATTCTCCCAAGGGA+TGG | + | chr1_4:5405949-5405968 | None:intergenic | 40.0% |
| ! | GCACAAATTGATTCTCCCAA+GGG | + | chr1_4:5405953-5405972 | None:intergenic | 40.0% |
| ! | TGCACAAATTGATTCTCCCA+AGG | + | chr1_4:5405954-5405973 | None:intergenic | 40.0% |
| ! | AGTTCCAGCGTACATTTTCT+TGG | - | chr1_4:5406110-5406129 | Msa0145700:intron | 40.0% |
| GTAACCAAGAAAATGTACGC+TGG | + | chr1_4:5406117-5406136 | None:intergenic | 40.0% | |
| ATATGATGCAGATGAGGATG+AGG | + | chr1_4:5406362-5406381 | None:intergenic | 40.0% | |
| !! | CTCCTTTTGAGAAGAAGCTT+GGG | - | chr1_4:5406404-5406423 | Msa0145700:five_prime_UTR | 40.0% |
| !! | TCCTTTTGAGAAGAAGCTTG+GGG | - | chr1_4:5406405-5406424 | Msa0145700:five_prime_UTR | 40.0% |
| GGGAAATGTCTGATTCAATC+TGG | + | chr1_4:5406444-5406463 | None:intergenic | 40.0% | |
| TCAGACATTTCCCCTGTTTA+TGG | - | chr1_4:5406451-5406470 | Msa0145700:five_prime_UTR | 40.0% | |
| ATTTCCCCTGTTTATGGAGA+TGG | - | chr1_4:5406457-5406476 | Msa0145700:five_prime_UTR | 40.0% | |
| TTTCCCCTGTTTATGGAGAT+GGG | - | chr1_4:5406458-5406477 | Msa0145700:five_prime_UTR | 40.0% | |
| AAACCCATCTCCATAAACAG+GGG | + | chr1_4:5406464-5406483 | None:intergenic | 40.0% | |
| CTAAACCCATCTCCATAAAC+AGG | + | chr1_4:5406466-5406485 | None:intergenic | 40.0% | |
| CAAAAAGCAGTTCGCAAGTA+TGG | - | chr1_4:5406493-5406512 | Msa0145700:five_prime_UTR | 40.0% | |
| GTTTCTAATCACAACAGGCT+AGG | + | chr1_4:5406622-5406641 | None:intergenic | 40.0% | |
| CTTCTTCCTCCTTCTTACGA+AGG | + | chr1_4:5399655-5399674 | None:intergenic | 45.0% | |
| CTTCGTAAGAAGGAGGAAGA+AGG | - | chr1_4:5399653-5399672 | Msa0145700:three_prime_UTR | 45.0% | |
| GTGTGTGTTGTGTGTGAACA+AGG | - | chr1_4:5399675-5399694 | Msa0145700:three_prime_UTR | 45.0% | |
| TGTGTTGTGTGTGAACAAGG+AGG | - | chr1_4:5399678-5399697 | Msa0145700:three_prime_UTR | 45.0% | |
| ACAAGTACCCCTGAAGTTGA+TGG | + | chr1_4:5400482-5400501 | None:intergenic | 45.0% | |
| ! | CTGGTGTTGGAAAATGTTGC+AGG | - | chr1_4:5400535-5400554 | Msa0145700:intron | 45.0% |
| ! | TCGTGCTATTGCGTTGTCTT+TGG | - | chr1_4:5400646-5400665 | Msa0145700:intron | 45.0% |
| CCCATCGGGAAATACTGAAT+TGG | + | chr1_4:5401446-5401465 | None:intergenic | 45.0% | |
| AACTCATACCTGTACCCCAT+CGG | + | chr1_4:5401461-5401480 | None:intergenic | 45.0% | |
| CAATTCCCACTTATTCGTGC+TGG | - | chr1_4:5401502-5401521 | Msa0145700:intron | 45.0% | |
| CAAGACCAGCACGAATAAGT+GGG | + | chr1_4:5401510-5401529 | None:intergenic | 45.0% | |
| ACAAGACCAGCACGAATAAG+TGG | + | chr1_4:5401511-5401530 | None:intergenic | 45.0% | |
| TGACAAAAGATAGGGGGGAA+AGG | + | chr1_4:5401689-5401708 | None:intergenic | 45.0% | |
| ! | CCCATCTTTTTCCCCTTTTC+TGG | - | chr1_4:5401755-5401774 | Msa0145700:CDS | 45.0% |
| AAAGGGAGCTAGCACAGTAA+TGG | - | chr1_4:5401901-5401920 | Msa0145700:intron | 45.0% | |
| ! | TTTGAAACCTGCAATGGAGG+TGG | + | chr1_4:5401969-5401988 | None:intergenic | 45.0% |
| CTACGATTGCGAGGAAAATG+AGG | + | chr1_4:5402006-5402025 | None:intergenic | 45.0% | |
| TGATTGTGACTACGATTGCG+AGG | + | chr1_4:5402015-5402034 | None:intergenic | 45.0% | |
| AGAAACGAGTGGAATTGTGC+TGG | + | chr1_4:5402134-5402153 | None:intergenic | 45.0% | |
| ACGATCTCCTTAGAAACGAG+TGG | + | chr1_4:5402145-5402164 | None:intergenic | 45.0% | |
| ! | ACTCGTTTCTAAGGAGATCG+TGG | - | chr1_4:5402144-5402163 | Msa0145700:intron | 45.0% |
| CACTTGATTCTTCATCCTCG+AGG | + | chr1_4:5402206-5402225 | None:intergenic | 45.0% | |
| CTCGAGGATGAAGAATCAAG+TGG | - | chr1_4:5402204-5402223 | Msa0145700:intron | 45.0% | |
| CGAAGAGAGTAGTAGTGTGT+CGG | - | chr1_4:5402237-5402256 | Msa0145700:intron | 45.0% | |
| AGAATGTGACCGTAAGGTCA+CGG | - | chr1_4:5402323-5402342 | Msa0145700:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr1_4:5402357-5402376 | None:intergenic | 45.0% |
| GCTGCGTACAATACACCAAA+TGG | - | chr1_4:5402389-5402408 | Msa0145700:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr1_4:5402392-5402411 | Msa0145700:intron | 45.0% | |
| ! | TGACAGATGGATTTGCGGAA+GGG | - | chr1_4:5402467-5402486 | Msa0145700:intron | 45.0% |
| TTTGCGGAAGGGAACATGAT+AGG | - | chr1_4:5402478-5402497 | Msa0145700:intron | 45.0% | |
| GAAGGGAACATGATAGGAGA+AGG | - | chr1_4:5402484-5402503 | Msa0145700:intron | 45.0% | |
| ACCAGAAAGGGGGAAAAAGA+TGG | - | chr1_4:5402857-5402876 | Msa0145700:CDS | 45.0% | |
| CCAGAAAGGGGGAAAAAGAT+GGG | - | chr1_4:5402858-5402877 | Msa0145700:CDS | 45.0% | |
| CAGAAAGGGGGAAAAAGATG+GGG | - | chr1_4:5402859-5402878 | Msa0145700:CDS | 45.0% | |
| ATTGACAAAAGATTGGGGGG+GGG | - | chr1_4:5402925-5402944 | Msa0145700:CDS | 45.0% | |
| ! | TTGCCAAGTCAGAAAGTGTG+GGG | - | chr1_4:5403091-5403110 | Msa0145700:intron | 45.0% |
| TAACCCCACACTTTCTGACT+TGG | + | chr1_4:5403097-5403116 | None:intergenic | 45.0% | |
| TGGCCGCTATCTAAATTGCT+TGG | - | chr1_4:5403440-5403459 | Msa0145700:intron | 45.0% | |
| GGCCGCTATCTAAATTGCTT+GGG | - | chr1_4:5403441-5403460 | Msa0145700:intron | 45.0% | |
| AGATTGGTAGGTTGCAAGCA+CGG | + | chr1_4:5403497-5403516 | None:intergenic | 45.0% | |
| GAAAGGGTAATTTCCAGACG+TGG | + | chr1_4:5403651-5403670 | None:intergenic | 45.0% | |
| TGCAGACATCACATTTCGGA+TGG | + | chr1_4:5403700-5403719 | None:intergenic | 45.0% | |
| ACTCCCATAAGACCGTAATC+TGG | + | chr1_4:5403847-5403866 | None:intergenic | 45.0% | |
| ! | TTGTTTTCCTGTTCCTGGTC+CGG | - | chr1_4:5403929-5403948 | Msa0145700:intron | 45.0% |
| AATTATTCCGGACCAGGAAC+AGG | + | chr1_4:5403939-5403958 | None:intergenic | 45.0% | |
| TGTTCCTGGTCCGGAATAAT+TGG | - | chr1_4:5403938-5403957 | Msa0145700:intron | 45.0% | |
| ! | GGCCTGTTGCCGTTAATTTT+TGG | - | chr1_4:5404195-5404214 | Msa0145700:intron | 45.0% |
| ATAAGACCAGCAGGGTTTGT+TGG | + | chr1_4:5404245-5404264 | None:intergenic | 45.0% | |
| AATATAGGGCACACCCATTC+TGG | - | chr1_4:5404267-5404286 | Msa0145700:intron | 45.0% | |
| CATGTGAAGGGCAATAATGC+TGG | + | chr1_4:5404295-5404314 | None:intergenic | 45.0% | |
| TCTCTTTACATGCAGCCACA+AGG | - | chr1_4:5404460-5404479 | Msa0145700:intron | 45.0% | |
| CTCTTTACATGCAGCCACAA+GGG | - | chr1_4:5404461-5404480 | Msa0145700:intron | 45.0% | |
| GACGGGATATATTGCCCATA+AGG | - | chr1_4:5404483-5404502 | Msa0145700:intron | 45.0% | |
| GAGCTTCCTTCCATCCTTAT+GGG | + | chr1_4:5404500-5404519 | None:intergenic | 45.0% | |
| AGAGCTTCCTTCCATCCTTA+TGG | + | chr1_4:5404501-5404520 | None:intergenic | 45.0% | |
| GTGTCTCGATTCTGCTATCA+TGG | - | chr1_4:5404528-5404547 | Msa0145700:intron | 45.0% | |
| !! | ACAAGCACTGAATGAAGCGA+GGG | - | chr1_4:5404651-5404670 | Msa0145700:intron | 45.0% |
| TGGTCTCAGGCATATGATAG+TGG | + | chr1_4:5405062-5405081 | None:intergenic | 45.0% | |
| TATCATATGCCTGAGACCAG+AGG | - | chr1_4:5405063-5405082 | Msa0145700:intron | 45.0% | |
| TCTAACAGTCTGCAACTAGG+AGG | + | chr1_4:5405523-5405542 | None:intergenic | 45.0% | |
| TAAACCCCATGGATATCACG+GGG | + | chr1_4:5405665-5405684 | None:intergenic | 45.0% | |
| CTAAACCCCATGGATATCAC+GGG | + | chr1_4:5405666-5405685 | None:intergenic | 45.0% | |
| GCTAAACCCCATGGATATCA+CGG | + | chr1_4:5405667-5405686 | None:intergenic | 45.0% | |
| TCAAAACCGCAACACATGCT+TGG | + | chr1_4:5405779-5405798 | None:intergenic | 45.0% | |
| TTTGTTTCCGTCCATCCCTT+GGG | - | chr1_4:5405935-5405954 | Msa0145700:CDS | 45.0% | |
| CTCATGAGCTAGAATCGATC+CGG | + | chr1_4:5406009-5406028 | None:intergenic | 45.0% | |
| CTCATGAGATGATGCATGCA+TGG | - | chr1_4:5406021-5406040 | Msa0145700:intron | 45.0% | |
| CCAAGCTTCTTCTCAAAAGG+AGG | + | chr1_4:5406406-5406425 | None:intergenic | 45.0% | |
| !! | CCTCCTTTTGAGAAGAAGCT+TGG | - | chr1_4:5406403-5406422 | Msa0145700:five_prime_UTR | 45.0% |
| TCCCCAAGCTTCTTCTCAAA+AGG | + | chr1_4:5406409-5406428 | None:intergenic | 45.0% | |
| ! | TATGGAGATGGGTTTAGAGC+CGG | - | chr1_4:5406469-5406488 | Msa0145700:five_prime_UTR | 45.0% |
| !!! | CTTGCGAACTGCTTTTTGAC+CGG | + | chr1_4:5406491-5406510 | None:intergenic | 45.0% |
| TTCGCAAGTATGGCCTAGAA+AGG | - | chr1_4:5406503-5406522 | Msa0145700:five_prime_UTR | 45.0% | |
| TATGGTGAAGGGTCCTTTCT+AGG | + | chr1_4:5406519-5406538 | None:intergenic | 45.0% | |
| AAGGACCCTTCACCATATCA+AGG | - | chr1_4:5406522-5406541 | Msa0145700:five_prime_UTR | 45.0% | |
| CGTCACCTTGATATGGTGAA+GGG | + | chr1_4:5406530-5406549 | None:intergenic | 45.0% | |
| CCTTCACCATATCAAGGTGA+CGG | - | chr1_4:5406528-5406547 | Msa0145700:five_prime_UTR | 45.0% | |
| CTTCACCATATCAAGGTGAC+GGG | - | chr1_4:5406529-5406548 | Msa0145700:five_prime_UTR | 45.0% | |
| AACTACCCGTCACCTTGATA+TGG | + | chr1_4:5406537-5406556 | None:intergenic | 45.0% | |
| CCTCCGTTTCTAATCACAAC+AGG | + | chr1_4:5406627-5406646 | None:intergenic | 45.0% | |
| CCTGTTGTGATTAGAAACGG+AGG | - | chr1_4:5406624-5406643 | Msa0145700:five_prime_UTR | 45.0% | |
| TGTGATTAGAAACGGAGGCT+TGG | - | chr1_4:5406629-5406648 | Msa0145700:five_prime_UTR | 45.0% | |
| GTGATTAGAAACGGAGGCTT+GGG | - | chr1_4:5406630-5406649 | Msa0145700:five_prime_UTR | 45.0% | |
| !!! | ACAAAAATATATTAATTTTA+GGG | + | chr1_4:5401190-5401209 | None:intergenic | 5.0% |
| !!! | AACAAAAATATATTAATTTT+AGG | + | chr1_4:5401191-5401210 | None:intergenic | 5.0% |
| TTGGAGTCACCTCCCAAACA+TGG | - | chr1_4:5401401-5401420 | Msa0145700:intron | 50.0% | |
| AGTATTTCCCGATGGGGTAC+AGG | - | chr1_4:5401450-5401469 | Msa0145700:intron | 50.0% | |
| ACTCATACCTGTACCCCATC+GGG | + | chr1_4:5401460-5401479 | None:intergenic | 50.0% | |
| GGGGTACAGGTATGAGTTAG+AGG | - | chr1_4:5401463-5401482 | Msa0145700:intron | 50.0% | |
| GGGCCTTCAAACCAGAAAAG+GGG | + | chr1_4:5401769-5401788 | None:intergenic | 50.0% | |
| GGGGCCTTCAAACCAGAAAA+GGG | + | chr1_4:5401770-5401789 | None:intergenic | 50.0% | |
| GCAATGGAGGTGGTTAGCAA+CGG | + | chr1_4:5401959-5401978 | None:intergenic | 50.0% | |
| TTGCTAACCACCTCCATTGC+AGG | - | chr1_4:5401959-5401978 | Msa0145700:intron | 50.0% | |
| ! | CGTTTCTAAGGAGATCGTGG+AGG | - | chr1_4:5402147-5402166 | Msa0145700:intron | 50.0% |
| TTGACGGTGATGAATCCTCG+AGG | - | chr1_4:5402188-5402207 | Msa0145700:intron | 50.0% | |
| AGAGAGTAGTAGTGTGTCGG+TGG | - | chr1_4:5402240-5402259 | Msa0145700:intron | 50.0% | |
| GGGTCGGTGGTATAGTTTGA+AGG | - | chr1_4:5402294-5402313 | Msa0145700:intron | 50.0% | |
| GAATGTGACCGTAAGGTCAC+GGG | - | chr1_4:5402324-5402343 | Msa0145700:intron | 50.0% | |
| GACTTGAACCCGTGACCTTA+CGG | + | chr1_4:5402335-5402354 | None:intergenic | 50.0% | |
| TGAAGCTCCCGCATATGCAT+CGG | + | chr1_4:5402421-5402440 | None:intergenic | 50.0% | |
| CCATCTGTCACATTCTCCGA+GGG | + | chr1_4:5402457-5402476 | None:intergenic | 50.0% | |
| TCCATCTGTCACATTCTCCG+AGG | + | chr1_4:5402458-5402477 | None:intergenic | 50.0% | |
| ! | GTGACAGATGGATTTGCGGA+AGG | - | chr1_4:5402466-5402485 | Msa0145700:intron | 50.0% |
| GGGAACATGATAGGAGAAGG+AGG | - | chr1_4:5402487-5402506 | Msa0145700:intron | 50.0% | |
| TGATGCAAAGGACAGGACCA+AGG | + | chr1_4:5402682-5402701 | None:intergenic | 50.0% | |
| TGGTCCTGTCCTTTGCATCA+TGG | - | chr1_4:5402682-5402701 | Msa0145700:CDS | 50.0% | |
| TCCTGTCCTTTGCATCATGG+CGG | - | chr1_4:5402685-5402704 | Msa0145700:CDS | 50.0% | |
| TGGGGGTCTTCAAACCAGAA+AGG | - | chr1_4:5402844-5402863 | Msa0145700:intron | 50.0% | |
| GGGGGTCTTCAAACCAGAAA+GGG | - | chr1_4:5402845-5402864 | Msa0145700:intron | 50.0% | |
| GGGGTCTTCAAACCAGAAAG+GGG | - | chr1_4:5402846-5402865 | Msa0145700:intron | 50.0% | |
| GGGTCTTCAAACCAGAAAGG+GGG | - | chr1_4:5402847-5402866 | Msa0145700:intron | 50.0% | |
| ! | CCCATCTTTTTCCCCCTTTC+TGG | + | chr1_4:5402861-5402880 | None:intergenic | 50.0% |
| TTGACAAAAGATTGGGGGGG+GGG | - | chr1_4:5402926-5402945 | Msa0145700:CDS | 50.0% | |
| GCTGGCTGCAATACTGAGAT+TGG | - | chr1_4:5403414-5403433 | Msa0145700:intron | 50.0% | |
| CACACCAATTATTCCGGACC+AGG | + | chr1_4:5403945-5403964 | None:intergenic | 50.0% | |
| GGTCCGGAATAATTGGTGTG+CGG | - | chr1_4:5403945-5403964 | Msa0145700:intron | 50.0% | |
| GTCCGGAATAATTGGTGTGC+GGG | - | chr1_4:5403946-5403965 | Msa0145700:intron | 50.0% | |
| CACCCGCACACCAATTATTC+CGG | + | chr1_4:5403951-5403970 | None:intergenic | 50.0% | |
| ACCTGCAATTGGAGGGAGAA+TGG | - | chr1_4:5404064-5404083 | Msa0145700:intron | 50.0% | |
| CCTGCAATTGGAGGGAGAAT+GGG | - | chr1_4:5404065-5404084 | Msa0145700:intron | 50.0% | |
| CAGATTCCAACAAACCCTGC+TGG | - | chr1_4:5404236-5404255 | Msa0145700:intron | 50.0% | |
| TTCGCTCACAGCTACAACAG+CGG | + | chr1_4:5404334-5404353 | None:intergenic | 50.0% | |
| CTGTTGTAGCTGTGAGCGAA+TGG | - | chr1_4:5404334-5404353 | Msa0145700:intron | 50.0% | |
| TTGTAGCTGTGAGCGAATGG+AGG | - | chr1_4:5404337-5404356 | Msa0145700:intron | 50.0% | |
| TTACATGCAGCCACAAGGGA+CGG | - | chr1_4:5404465-5404484 | Msa0145700:intron | 50.0% | |
| GCAATATATCCCGTCCCTTG+TGG | + | chr1_4:5404478-5404497 | None:intergenic | 50.0% | |
| !! | GACAAGCACTGAATGAAGCG+AGG | - | chr1_4:5404650-5404669 | Msa0145700:intron | 50.0% |
| CTATTTCCTGTGCCGAGTCT+AGG | + | chr1_4:5405368-5405387 | None:intergenic | 50.0% | |
| GGGTCTAACAGTCTGCAACT+AGG | + | chr1_4:5405526-5405545 | None:intergenic | 50.0% | |
| AAACCCCATGGATATCACGG+GGG | + | chr1_4:5405664-5405683 | None:intergenic | 50.0% | |
| CTACTGCCAAGCATGTGTTG+CGG | - | chr1_4:5405770-5405789 | Msa0145700:intron | 50.0% | |
| ! | CTTTGTTTCCGTCCATCCCT+TGG | - | chr1_4:5405934-5405953 | Msa0145700:CDS | 50.0% |
| TGATTCTCCCAAGGGATGGA+CGG | + | chr1_4:5405945-5405964 | None:intergenic | 50.0% | |
| AGATGATGCATGCATGGCTG+CGG | - | chr1_4:5406027-5406046 | Msa0145700:intron | 50.0% | |
| !!! | GTCAGGTTTTGGCTCACATG+TGG | - | chr1_4:5406290-5406309 | Msa0145700:five_prime_UTR | 50.0% |
| !!! | GGTTTTGGCTCACATGTGGT+TGG | - | chr1_4:5406294-5406313 | Msa0145700:five_prime_UTR | 50.0% |
| TCTGAGCTTTCTTCTGCACC+AGG | - | chr1_4:5406319-5406338 | Msa0145700:five_prime_UTR | 50.0% | |
| GCTGATGAAAAGTTGCTGCC+TGG | + | chr1_4:5406340-5406359 | None:intergenic | 50.0% | |
| CCGTCACCTTGATATGGTGA+AGG | + | chr1_4:5406531-5406550 | None:intergenic | 50.0% | |
| AAACGGAGGCTTGGGTACTT+TGG | - | chr1_4:5406638-5406657 | Msa0145700:five_prime_UTR | 50.0% | |
| TGGGGTCTCCCTTCGTAAGA+AGG | - | chr1_4:5399643-5399662 | Msa0145700:three_prime_UTR | 55.0% | |
| GGTCTCCCTTCGTAAGAAGG+AGG | - | chr1_4:5399646-5399665 | Msa0145700:three_prime_UTR | 55.0% | |
| ! | ATACAAAGGGGGGTGTGCGT+GGG | + | chr1_4:5399706-5399725 | None:intergenic | 55.0% |
| ! | AATACAAAGGGGGGTGTGCG+TGG | + | chr1_4:5399707-5399726 | None:intergenic | 55.0% |
| TGAACATCTTGTCGCGGCAC+TGG | - | chr1_4:5400183-5400202 | Msa0145700:intron | 55.0% | |
| CAGACACTGACACGCTACAC+CGG | + | chr1_4:5400252-5400271 | None:intergenic | 55.0% | |
| GTGTAGCGTGTCAGTGTCTG+TGG | - | chr1_4:5400252-5400271 | Msa0145700:intron | 55.0% | |
| GGGGCTGATGTGATGTACAC+TGG | - | chr1_4:5401586-5401605 | Msa0145700:intron | 55.0% | |
| GGGGGCCTTCAAACCAGAAA+AGG | + | chr1_4:5401771-5401790 | None:intergenic | 55.0% | |
| TCACCGTTCTCTGCATTCGC+CGG | - | chr1_4:5402062-5402081 | Msa0145700:CDS | 55.0% | |
| GTTCCGGCGAATGCAGAGAA+CGG | + | chr1_4:5402068-5402087 | None:intergenic | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr1_4:5402336-5402355 | Msa0145700:intron | 55.0% | |
| ATGCATCGGGTCCCACCATT+TGG | + | chr1_4:5402407-5402426 | None:intergenic | 55.0% | |
| GAAGCTCCCGCATATGCATC+GGG | + | chr1_4:5402420-5402439 | None:intergenic | 55.0% | |
| CCCTCGGAGAATGTGACAGA+TGG | - | chr1_4:5402454-5402473 | Msa0145700:intron | 55.0% | |
| ACCAAGGAAGCTGCAGAGAG+GGG | + | chr1_4:5402666-5402685 | None:intergenic | 55.0% | |
| GACCAAGGAAGCTGCAGAGA+GGG | + | chr1_4:5402667-5402686 | None:intergenic | 55.0% | |
| TCCGCCATGATGCAAAGGAC+AGG | + | chr1_4:5402689-5402708 | None:intergenic | 55.0% | |
| ACAGCTCCGCCATGATGCAA+AGG | + | chr1_4:5402694-5402713 | None:intergenic | 55.0% | |
| TGACAAAAGATTGGGGGGGG+GGG | - | chr1_4:5402927-5402946 | Msa0145700:CDS | 55.0% | |
| GTAGGTTGCAAGCACGGCAA+CGG | + | chr1_4:5403491-5403510 | None:intergenic | 55.0% | |
| CCCATTCTCCCTCCAATTGC+AGG | + | chr1_4:5404068-5404087 | None:intergenic | 55.0% | |
| TCGCTCACAGCTACAACAGC+GGG | + | chr1_4:5404333-5404352 | None:intergenic | 55.0% | |
| TACATGCAGCCACAAGGGAC+GGG | - | chr1_4:5404466-5404485 | Msa0145700:intron | 55.0% | |
| ! | AGCACTGAATGAAGCGAGGG+AGG | - | chr1_4:5404654-5404673 | Msa0145700:intron | 55.0% |
| GCACTGAATGAAGCGAGGGA+GGG | - | chr1_4:5404655-5404674 | Msa0145700:intron | 55.0% | |
| CACTGAATGAAGCGAGGGAG+GGG | - | chr1_4:5404656-5404675 | Msa0145700:intron | 55.0% | |
| ACTGAATGAAGCGAGGGAGG+GGG | - | chr1_4:5404657-5404676 | Msa0145700:intron | 55.0% | |
| ! | CAGTGCTGAGTTCCTCTGAG+AGG | + | chr1_4:5405095-5405114 | None:intergenic | 55.0% |
| AGAAGACCTAGACTCGGCAC+AGG | - | chr1_4:5405359-5405378 | Msa0145700:intron | 55.0% | |
| CAGCGCGCAGTCAGTTTGTA+TGG | + | chr1_4:5405407-5405426 | None:intergenic | 55.0% | |
| TGCTTCCCCCGTGATATCCA+TGG | - | chr1_4:5405656-5405675 | Msa0145700:intron | 55.0% | |
| GCTTCCCCCGTGATATCCAT+GGG | - | chr1_4:5405657-5405676 | Msa0145700:intron | 55.0% | |
| CTTCCCCCGTGATATCCATG+GGG | - | chr1_4:5405658-5405677 | Msa0145700:intron | 55.0% | |
| ! | TACAAAGGGGGGTGTGCGTG+GGG | + | chr1_4:5399705-5399724 | None:intergenic | 60.0% |
| ACACTGACACGCTACACCGG+TGG | + | chr1_4:5400249-5400268 | None:intergenic | 60.0% | |
| GCACCTTCCGCCAATTCCTC+CGG | - | chr1_4:5401923-5401942 | Msa0145700:intron | 60.0% | |
| AACACCGCCGGAGGAATTGG+CGG | + | chr1_4:5401933-5401952 | None:intergenic | 60.0% | |
| CACAACACCGCCGGAGGAAT+TGG | + | chr1_4:5401936-5401955 | None:intergenic | 60.0% | |
| TAGCAACGGCACAACACCGC+CGG | + | chr1_4:5401945-5401964 | None:intergenic | 60.0% | |
| GGTGGGACCCGATGCATATG+CGG | - | chr1_4:5402410-5402429 | Msa0145700:intron | 60.0% | |
| GTGGGACCCGATGCATATGC+GGG | - | chr1_4:5402411-5402430 | Msa0145700:intron | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | chr1_4:5402427-5402446 | Msa0145700:intron | 60.0% | |
| CACATTCTCCGAGGGCAACC+CGG | + | chr1_4:5402449-5402468 | None:intergenic | 60.0% | |
| TCCCCTCTCTGCAGCTTCCT+TGG | - | chr1_4:5402662-5402681 | Msa0145700:CDS | 60.0% | |
| GGACCAAGGAAGCTGCAGAG+AGG | + | chr1_4:5402668-5402687 | None:intergenic | 60.0% | |
| GACAAAAGATTGGGGGGGGG+GGG | - | chr1_4:5402928-5402947 | Msa0145700:CDS | 60.0% | |
| ACAAAAGATTGGGGGGGGGG+GGG | - | chr1_4:5402929-5402948 | Msa0145700:CDS | 60.0% | |
| TACGTGTGCGTGCGTGTGTG+TGG | - | chr1_4:5403055-5403074 | Msa0145700:intron | 60.0% | |
| !! | GCACGGCAACGGAAGCATTC+AGG | + | chr1_4:5403480-5403499 | None:intergenic | 60.0% |
| AGGCAGAGTCCTCTGGTCTC+AGG | + | chr1_4:5405075-5405094 | None:intergenic | 60.0% | |
| ! | CTCTGAGAGGCAGAGTCCTC+TGG | + | chr1_4:5405082-5405101 | None:intergenic | 60.0% |
| CAGAGGACTCTGCCTCTCAG+AGG | - | chr1_4:5405080-5405099 | Msa0145700:intron | 60.0% | |
| CATGCATGGCTGCGGCTAAC+AGG | - | chr1_4:5406035-5406054 | Msa0145700:intron | 60.0% | |
| CCTTCCGCCAATTCCTCCGG+CGG | - | chr1_4:5401926-5401945 | Msa0145700:intron | 65.0% | |
| CACCCTATGTTCGCCGACGG+CGG | + | chr1_4:5402274-5402293 | None:intergenic | 65.0% | |
| GCCGTCGGCGAACATAGGGT+GGG | - | chr1_4:5402273-5402292 | Msa0145700:intron | 65.0% | |
| CCCCACCCTATGTTCGCCGA+CGG | + | chr1_4:5402277-5402296 | None:intergenic | 65.0% | |
| CCGTCGGCGAACATAGGGTG+GGG | - | chr1_4:5402274-5402293 | Msa0145700:intron | 65.0% | |
| CGGCGAACATAGGGTGGGGT+CGG | - | chr1_4:5402278-5402297 | Msa0145700:intron | 65.0% | |
| CGAACATAGGGTGGGGTCGG+TGG | - | chr1_4:5402281-5402300 | Msa0145700:intron | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | - | chr1_4:5402428-5402447 | Msa0145700:intron | 65.0% | |
| TCAGTGCACCGGGTTGCCCT+CGG | - | chr1_4:5402438-5402457 | Msa0145700:intron | 65.0% | |
| CAAAAGATTGGGGGGGGGGG+GGG | - | chr1_4:5402930-5402949 | Msa0145700:CDS | 65.0% | |
| AAAAGATTGGGGGGGGGGGG+GGG | - | chr1_4:5402931-5402950 | Msa0145700:CDS | 65.0% | |
| CCGCCGGAGGAATTGGCGGA+AGG | + | chr1_4:5401929-5401948 | None:intergenic | 70.0% | |
| CAACGGCACAACACCGCCGG+AGG | + | chr1_4:5401942-5401961 | None:intergenic | 70.0% | |
| CCTATGTTCGCCGACGGCGG+CGG | + | chr1_4:5402271-5402290 | None:intergenic | 70.0% | |
| CGCCGCCGTCGGCGAACATA+GGG | - | chr1_4:5402269-5402288 | Msa0145700:intron | 70.0% | |
| CGCCGTCGGCGAACATAGGG+TGG | - | chr1_4:5402272-5402291 | Msa0145700:intron | 70.0% | |
| AAAGATTGGGGGGGGGGGGG+GGG | - | chr1_4:5402932-5402951 | Msa0145700:CDS | 70.0% | |
| GGTGGAGTCACCGCCGCCGT+CGG | - | chr1_4:5402258-5402277 | Msa0145700:intron | 75.0% | |
| CCGCCGCCGTCGGCGAACAT+AGG | - | chr1_4:5402268-5402287 | Msa0145700:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 5399620 | 5406757 | 5399620 | ID=Msa0145700;Name=Msa0145700 |
| chr1_4 | mRNA | 5399620 | 5406757 | 5399620 | ID=Msa0145700-mRNA-1;Parent=Msa0145700;Name=Msa0145700-mRNA-1;_AED=0.13;_eAED=0.13;_QI=512|0.90|0.91|1|0.72|0.66|12|190|452 |
| chr1_4 | exon | 5399620 | 5400126 | 5399620 | ID=Msa0145700-mRNA-1:exon:2289;Parent=Msa0145700-mRNA-1 |
| chr1_4 | exon | 5400321 | 5400379 | 5400321 | ID=Msa0145700-mRNA-1:exon:2288;Parent=Msa0145700-mRNA-1 |
| chr1_4 | exon | 5400912 | 5400973 | 5400912 | ID=Msa0145700-mRNA-1:exon:2287;Parent=Msa0145700-mRNA-1 |
| chr1_4 | exon | 5401264 | 5401320 | 5401264 | ID=Msa0145700-mRNA-1:exon:2286;Parent=Msa0145700-mRNA-1 |
| chr1_4 | exon | 5401690 | 5401902 | 5401690 | ID=Msa0145700-mRNA-1:exon:2285;Parent=Msa0145700-mRNA-1 |
| chr1_4 | exon | 5402019 | 5402138 | 5402019 | ID=Msa0145700-mRNA-1:exon:2284;Parent=Msa0145700-mRNA-1 |
| chr1_4 | exon | 5402650 | 5402733 | 5402650 | ID=Msa0145700-mRNA-1:exon:2283;Parent=Msa0145700-mRNA-1 |
| chr1_4 | exon | 5402850 | 5402970 | 5402850 | ID=Msa0145700-mRNA-1:exon:2282;Parent=Msa0145700-mRNA-1 |
| chr1_4 | exon | 5404906 | 5405038 | 5404906 | ID=Msa0145700-mRNA-1:exon:2281;Parent=Msa0145700-mRNA-1 |
| chr1_4 | exon | 5405676 | 5405766 | 5405676 | ID=Msa0145700-mRNA-1:exon:2280;Parent=Msa0145700-mRNA-1 |
| chr1_4 | exon | 5405884 | 5406028 | 5405884 | ID=Msa0145700-mRNA-1:exon:2279;Parent=Msa0145700-mRNA-1 |
| chr1_4 | exon | 5406289 | 5406757 | 5406289 | ID=Msa0145700-mRNA-1:exon:2278;Parent=Msa0145700-mRNA-1 |
| chr1_4 | five_prime_UTR | 5406289 | 5406757 | 5406289 | ID=Msa0145700-mRNA-1:five_prime_utr;Parent=Msa0145700-mRNA-1 |
| chr1_4 | five_prime_UTR | 5405986 | 5406028 | 5405986 | ID=Msa0145700-mRNA-1:five_prime_utr;Parent=Msa0145700-mRNA-1 |
| chr1_4 | CDS | 5405884 | 5405985 | 5405884 | ID=Msa0145700-mRNA-1:cds;Parent=Msa0145700-mRNA-1 |
| chr1_4 | CDS | 5405676 | 5405766 | 5405676 | ID=Msa0145700-mRNA-1:cds;Parent=Msa0145700-mRNA-1 |
| chr1_4 | CDS | 5404906 | 5405038 | 5404906 | ID=Msa0145700-mRNA-1:cds;Parent=Msa0145700-mRNA-1 |
| chr1_4 | CDS | 5402850 | 5402970 | 5402850 | ID=Msa0145700-mRNA-1:cds;Parent=Msa0145700-mRNA-1 |
| chr1_4 | CDS | 5402650 | 5402733 | 5402650 | ID=Msa0145700-mRNA-1:cds;Parent=Msa0145700-mRNA-1 |
| chr1_4 | CDS | 5402019 | 5402138 | 5402019 | ID=Msa0145700-mRNA-1:cds;Parent=Msa0145700-mRNA-1 |
| chr1_4 | CDS | 5401690 | 5401902 | 5401690 | ID=Msa0145700-mRNA-1:cds;Parent=Msa0145700-mRNA-1 |
| chr1_4 | CDS | 5401264 | 5401320 | 5401264 | ID=Msa0145700-mRNA-1:cds;Parent=Msa0145700-mRNA-1 |
| chr1_4 | CDS | 5400912 | 5400973 | 5400912 | ID=Msa0145700-mRNA-1:cds;Parent=Msa0145700-mRNA-1 |
| chr1_4 | CDS | 5400321 | 5400379 | 5400321 | ID=Msa0145700-mRNA-1:cds;Parent=Msa0145700-mRNA-1 |
| chr1_4 | CDS | 5399810 | 5400126 | 5399810 | ID=Msa0145700-mRNA-1:cds;Parent=Msa0145700-mRNA-1 |
| chr1_4 | three_prime_UTR | 5399620 | 5399809 | 5399620 | ID=Msa0145700-mRNA-1:three_prime_utr;Parent=Msa0145700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
