AlfalfaGEDB | Msa0050970

M. sativa cultivar zhongmu-4 / Msa0050970

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008285 GO:0009653 GO:0009791 GO:0009908 GO:0010154 GO:0016787 GO:0019538 GO:0022414 GO:0032182 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0042127 GO:0043130 GO:0043170 GO:0044238 GO:0045926 GO:0046620 GO:0046621 GO:0048316 GO:0048317 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1905392 GO:1905623 GO:2000024 GO:2000026
PFAM: PF00412.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0050970	XP_013466041.1	95.949	469	2	1	1	452	1	469	0.0	936

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0050970	sp\|P0C7Q8\|DA1_ARATH	59.475	533	132	8	1	451	1	531	0.0	604

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0050970	A0A072VE38	95.949	469	2	1	1	452	1	469	0.0	936

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TFs/TRs:

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Gene ID	Type	Classification
Msa0050970	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010580	Msa0050970	0.868745	5.197227e-66	-8.615850e-47
Msa0050970	Msa0145700	0.981220	4.611766e-152	-8.615850e-47
Msa0050970	Msa0297950	0.800437	1.442202e-48	-8.615850e-47
Msa0050970	Msa0759610	0.813891	2.034186e-51	-8.615850e-47
Msa0050970	Msa1394370	0.803852	2.860151e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0050970	MtrunA17_Chr1g0154501	95.949	469	2	1	1	452	1	469	0.0	936
Msa0050970	MtrunA17_Chr8g0373781	56.685	531	150	8	1	451	1	531	0.0	558
Msa0050970	MtrunA17_Chr5g0436051	50.524	477	205	5	1	451	144	615	6.20e-164	476
Msa0050970	MtrunA17_Chr3g0112601	50.405	494	190	10	1	451	31	512	2.22e-157	455
Msa0050970	MtrunA17_Chr5g0403261	50.820	366	102	4	1	288	1	366	8.63e-124	364
Msa0050970	MtrunA17_Chr5g0403301	64.643	280	93	1	178	451	27	306	1.38e-121	356
Msa0050970	MtrunA17_Chr5g0403271	68.421	152	43	1	305	451	2	153	8.84e-63	200
Msa0050970	MtrunA17_Chr5g0403291	56.818	88	38	0	106	193	379	466	8.01e-32	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0050970	AT1G19270.1	59.475	533	132	8	1	451	1	531	0.0	604
Msa0050970	AT1G19270.2	59.475	533	132	8	1	451	1	531	0.0	604
Msa0050970	AT4G36860.1	62.069	435	133	5	43	451	125	553	0.0	540
Msa0050970	AT4G36860.3	62.069	435	133	5	43	451	149	577	0.0	540
Msa0050970	AT2G39830.1	51.329	489	190	8	1	451	49	527	8.25e-165	475
Msa0050970	AT2G39830.3	51.458	480	194	6	1	451	49	518	3.34e-164	473
Msa0050970	AT2G39830.2	51.016	492	190	9	1	451	49	530	1.73e-162	469
Msa0050970	AT4G36860.2	61.890	328	99	3	43	348	125	448	6.62e-147	427
Msa0050970	AT2G39830.4	49.344	381	150	7	1	348	49	419	1.79e-123	366
Msa0050970	AT5G66610.3	46.556	421	185	8	54	445	15	424	7.23e-112	337

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Find 159 sgRNAs with CRISPR-Local

Find 503 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCAGTTAGGACTAGG+AGG	0.621731	1_2:+5007682	None:intergenic
AAAATTGAAATAGTTTGGTT+TGG	0.392881	1_2:+5007388	None:intergenic
AAACCCATCTCCATAAACAG+GGG	0.693477	1_2:+5001080	None:intergenic
AAACGGAGGCTTGGGTACTT+TGG	0.438070	1_2:-5000903	Msa0050970:three_prime_UTR
AAAGGAAAGGGGTGTGTGTG+TGG	0.468682	1_2:+5007718	None:intergenic
AACTACCCGTCACCTTGATA+TGG	0.383599	1_2:+5001007	None:intergenic
AACTCATACCTGTACCCCAT+CGG	0.520543	1_2:+5005949	None:intergenic
AAGGAAAGGGGTGTGTGTGT+GGG	0.519406	1_2:+5007719	None:intergenic
AAGGACCCTTCACCATATCA+AGG	0.581020	1_2:-5001019	Msa0050970:CDS
AATAATGCTGGTTCCAGAAT+GGG	0.483891	1_2:+5003263	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAAGAGGGTTTAGC+AGG	+	chr1_2:5001359-5001378	None:intergenic	30.0%
ATGTTGATGTTTATTTGTGC+AGG	-	chr1_2:5001534-5001553	Msa0050970:CDS	30.0%
TGTTGATGTTTATTTGTGCA+GGG	-	chr1_2:5001535-5001554	Msa0050970:CDS	30.0%
GATTATTGCATCTTCTTGAA+AGG	-	chr1_2:5001930-5001949	Msa0050970:intron	30.0%
CTGAGATTGAAGTTAAGTTA+TGG	-	chr1_2:5001991-5002010	Msa0050970:intron	30.0%
AAAGGAGAAATGGAAAAAAC+AGG	+	chr1_2:5002085-5002104	None:intergenic	30.0%
TTCGATGATAAAAGGAGAAA+TGG	+	chr1_2:5002095-5002114	None:intergenic	30.0%
GAAATTCAATAGTAAGCAAC+TGG	+	chr1_2:5002178-5002197	None:intergenic	30.0%
GGAATTTCTGCTTATATTGA+TGG	-	chr1_2:5002432-5002451	Msa0050970:intron	30.0%
CTTCTTCTAATTGTGATTTG+TGG	+	chr1_2:5002550-5002569	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	5000806	5007830	5000806	ID=Msa0050970;Name=Msa0050970
chr1_2	mRNA	5000806	5007830	5000806	ID=Msa0050970-mRNA-1;Parent=Msa0050970;Name=Msa0050970-mRNA-1;_AED=0.13;_eAED=0.13;_QI=529\|0.90\|0.91\|1\|0.72\|0.66\|12\|190\|452
chr1_2	exon	5000806	5001312	5000806	ID=Msa0050970-mRNA-1:exon:1438;Parent=Msa0050970-mRNA-1
chr1_2	exon	5001507	5001565	5001507	ID=Msa0050970-mRNA-1:exon:1437;Parent=Msa0050970-mRNA-1
chr1_2	exon	5002098	5002159	5002098	ID=Msa0050970-mRNA-1:exon:1436;Parent=Msa0050970-mRNA-1
chr1_2	exon	5002452	5002508	5002452	ID=Msa0050970-mRNA-1:exon:1435;Parent=Msa0050970-mRNA-1
chr1_2	exon	5002878	5003090	5002878	ID=Msa0050970-mRNA-1:exon:1434;Parent=Msa0050970-mRNA-1
chr1_2	exon	5003207	5003326	5003207	ID=Msa0050970-mRNA-1:exon:1433;Parent=Msa0050970-mRNA-1
chr1_2	exon	5003838	5003921	5003838	ID=Msa0050970-mRNA-1:exon:1432;Parent=Msa0050970-mRNA-1
chr1_2	exon	5004038	5004158	5004038	ID=Msa0050970-mRNA-1:exon:1431;Parent=Msa0050970-mRNA-1
chr1_2	exon	5005958	5006090	5005958	ID=Msa0050970-mRNA-1:exon:1430;Parent=Msa0050970-mRNA-1
chr1_2	exon	5006728	5006818	5006728	ID=Msa0050970-mRNA-1:exon:1429;Parent=Msa0050970-mRNA-1
chr1_2	exon	5006936	5007080	5006936	ID=Msa0050970-mRNA-1:exon:1428;Parent=Msa0050970-mRNA-1
chr1_2	exon	5007345	5007830	5007345	ID=Msa0050970-mRNA-1:exon:1427;Parent=Msa0050970-mRNA-1
chr1_2	five_prime_UTR	5007345	5007830	5007345	ID=Msa0050970-mRNA-1:five_prime_utr;Parent=Msa0050970-mRNA-1
chr1_2	five_prime_UTR	5007038	5007080	5007038	ID=Msa0050970-mRNA-1:five_prime_utr;Parent=Msa0050970-mRNA-1
chr1_2	CDS	5006936	5007037	5006936	ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2	CDS	5006728	5006818	5006728	ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2	CDS	5005958	5006090	5005958	ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2	CDS	5004038	5004158	5004038	ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2	CDS	5003838	5003921	5003838	ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2	CDS	5003207	5003326	5003207	ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2	CDS	5002878	5003090	5002878	ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2	CDS	5002452	5002508	5002452	ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2	CDS	5002098	5002159	5002098	ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2	CDS	5001507	5001565	5001507	ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2	CDS	5000996	5001312	5000996	ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2	three_prime_UTR	5000806	5000995	5000806	ID=Msa0050970-mRNA-1:three_prime_utr;Parent=Msa0050970-mRNA-1

Gene Sequence

>Msa0050970

ATGGGTTGGCTTAGTAGAATTTTTAAAGGGTCTGATCATAAGGTTTCTGAAGGGCATTATTATAAAGATGATTCGAGTTATTACTTGCCATCAACTTCAGGGGATGATTGGACTGAGAACGAGAATGAAGACATTGATCGTGCTATTGCGTTGTCTTTGGTAGAAGAAAATCAGAAAGTGAAAAATGTAAAAGACCACAAATCACAATTAGAAGAAGATGAACAACTTGCCAGAGCAATAGAAGAAAGTCTAAATTTGGAGTCACCTCCCAAACATGGAAATGATAACATGTATCAACCAATTCAGTATTTCCCGATGGGGTACAGGATATGTGCTGGCTGCAATACTGAGATTGGTTATGGCCGCTATCTAAATTGCTTGGGTGCATTCTGGCATCCTGAATGCTTCCGTTGCCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTTTCCACGTCTGGAAATTACCCTTTCCATAAAGCATGCTATAAGGAAAGCTACCATCCGAAATGTGATGTCTGCAAGCACTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACACCCATTCTGGAACCAGCATTATTGCCCTTCACATGAACATGATAACACTGCCCGCTGTTGTAGCTGTGAGCGAATGGAGCCACAAGGGACGGGATATATTGCCCATAAGGATGGAAGGAAGCTCTGCTTAGAGTGTCTCGATTCTGCTATCATGGATACTAATGAATGTCAGCCCCTTCATGCTGATATACTGAAGTTCTATGAAAGCATAAATATGAAATTGAATCAGCAAGTTCCTCTACTTTTGGTTGAAAGACAAGCACTGAATGAAGCGAGGGAGGGGGAAAAGAATGGCCACTATCATATGCCTGAGACCAGAGGACTCTGCCTCTCAGAGGAACTCAGCACTCCATACAAACTGACTGCGCGCTGTGATGTGACTGCAATTCTCATTCTATACGGTCTTCCAAGATTACTTACCGGATCGATTCTAGCTCATGAGATGATGCATGCATGGCTGCGGCTAACAGGTTTTCGGACTCTAAGTCAAGATGTTGAAGAAGGTATTTGTCAGGTTTTGGCTCACATGTGGTTGGAGTCTGAGCTTTCTTCTGCACCAGGCAGCAACTTTTCATCAGCCTCATCCTCATCTGCATCATATACATCTAAGACAGGTAAAAGACCTCCTTTTGAGAAGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGGTTTAGAGCCGGTCAAAAAGCAGTTCGCAAGTATGGCCTAGAAAGGACCCTTCACCATATCAAGGTGACGGGTAGTTTCCCATATTAA

Protein sequence

>Msa0050970

MGWLSRIFKGSDHKVSEGHYYKDDSSYYLPSTSGDDWTENENEDIDRAIALSLVEENQKVKNVKDHKSQLEEDEQLARAIEESLNLESPPKHGNDNMYQPIQYFPMGYRICAGCNTEIGYGRYLNCLGAFWHPECFRCRACNLPISDYEFSTSGNYPFHKACYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWNQHYCPSHEHDNTARCCSCERMEPQGTGYIAHKDGRKLCLECLDSAIMDTNECQPLHADILKFYESINMKLNQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTPYKLTARCDVTAILILYGLPRLLTGSILAHEMMHAWLRLTGFRTLSQDVEEGICQVLAHMWLESELSSAPGSNFSSASSSSASYTSKTGKRPPFEKKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLERTLHHIKVTGSFPY*