AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0050970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050970 MtrunA17_Chr1g0154501 95.949 469 2 1 1 452 1 469 0.0 936
Msa0050970 MtrunA17_Chr8g0373781 56.685 531 150 8 1 451 1 531 0.0 558
Msa0050970 MtrunA17_Chr5g0436051 50.524 477 205 5 1 451 144 615 6.20e-164 476
Msa0050970 MtrunA17_Chr3g0112601 50.405 494 190 10 1 451 31 512 2.22e-157 455
Msa0050970 MtrunA17_Chr5g0403261 50.820 366 102 4 1 288 1 366 8.63e-124 364
Msa0050970 MtrunA17_Chr5g0403301 64.643 280 93 1 178 451 27 306 1.38e-121 356
Msa0050970 MtrunA17_Chr5g0403271 68.421 152 43 1 305 451 2 153 8.84e-63 200
Msa0050970 MtrunA17_Chr5g0403291 56.818 88 38 0 106 193 379 466 8.01e-32 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050970 AT1G19270.1 59.475 533 132 8 1 451 1 531 0.0 604
Msa0050970 AT1G19270.2 59.475 533 132 8 1 451 1 531 0.0 604
Msa0050970 AT4G36860.1 62.069 435 133 5 43 451 125 553 0.0 540
Msa0050970 AT4G36860.3 62.069 435 133 5 43 451 149 577 0.0 540
Msa0050970 AT2G39830.1 51.329 489 190 8 1 451 49 527 8.25e-165 475
Msa0050970 AT2G39830.3 51.458 480 194 6 1 451 49 518 3.34e-164 473
Msa0050970 AT2G39830.2 51.016 492 190 9 1 451 49 530 1.73e-162 469
Msa0050970 AT4G36860.2 61.890 328 99 3 43 348 125 448 6.62e-147 427
Msa0050970 AT2G39830.4 49.344 381 150 7 1 348 49 419 1.79e-123 366
Msa0050970 AT5G66610.3 46.556 421 185 8 54 445 15 424 7.23e-112 337
Msa0050970 AT5G66610.1 45.824 443 201 9 35 445 116 551 1.13e-111 340
Msa0050970 AT5G66620.1 44.575 424 188 8 54 444 231 640 4.36e-110 339
Msa0050970 AT5G66620.3 44.575 424 188 8 54 444 222 631 9.92e-110 338
Msa0050970 AT5G66620.4 44.575 424 188 8 54 444 222 631 9.92e-110 338
Msa0050970 AT5G66610.2 43.404 470 200 10 35 445 116 578 1.24e-106 328
Msa0050970 AT5G66630.1 45.628 366 155 9 110 444 346 698 7.03e-93 296
Msa0050970 AT5G17890.1 45.822 371 169 7 111 451 1240 1608 3.19e-91 303
Msa0050970 AT5G66640.1 38.255 447 218 10 39 444 9 438 8.24e-90 280
Msa0050970 AT5G66640.7 38.255 447 218 10 39 444 9 438 8.24e-90 280
Msa0050970 AT5G66640.5 38.255 447 219 10 39 444 40 470 2.17e-89 280
Msa0050970 AT5G66640.4 38.255 447 218 10 39 444 40 469 2.73e-89 280
Msa0050970 AT5G66640.3 44.410 322 144 4 158 444 10 331 1.62e-85 266
Msa0050970 AT5G66640.6 34.676 447 231 11 39 444 40 466 3.71e-73 238
Msa0050970 AT5G66640.2 34.676 447 230 11 39 444 40 465 4.20e-73 238
Msa0050970 AT5G66620.2 43.359 256 126 6 54 304 222 463 4.56e-64 215

Find 159 sgRNAs with CRISPR-Local

Find 503 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCTTATAGCATGCTTTA+TGG 0.147926 1_2:+5003873 None:intergenic
GGAGATATCTATACTTAATA+TGG 0.171031 1_2:+5000982 None:intergenic
TCAGACATTTCCCCTGTTTA+TGG 0.175438 1_2:-5001090 Msa0050970:CDS
ATGAGAAACAATGAGATAAA+TGG 0.207370 1_2:+5000960 None:intergenic
TATGGTGAAGGGTCCTTTCT+AGG 0.258048 1_2:+5001025 None:intergenic
GTGAAGTGTGTGATCTAATT+TGG 0.262042 1_2:+5007423 None:intergenic
AGAGCTTCCTTCCATCCTTA+TGG 0.265230 1_2:+5003045 None:intergenic
GTAACAAAATTGAAATAGTT+TGG 0.270323 1_2:+5007383 None:intergenic
CATGTTATCATTTCCATGTT+TGG 0.271952 1_2:+5005993 None:intergenic
TATTACTTGCCATCAACTTC+AGG 0.279065 1_2:-5006937 Msa0050970:CDS
AGAAGGTATTTGTCAGGTTT+TGG 0.289094 1_2:-5001262 Msa0050970:CDS
AATATAGGGCACACCCATTC+TGG 0.293148 1_2:-5003276 Msa0050970:CDS
ATGTTATCATTTCCATGTTT+GGG 0.306036 1_2:+5005994 None:intergenic
AATAGAAGAAAGTCTAAATT+TGG 0.307251 1_2:-5006025 Msa0050970:CDS
TAAATTGCTTGGGTGCATTC+TGG 0.307599 1_2:-5004092 Msa0050970:CDS
TCAGCAAGTTCCTCTACTTT+TGG 0.312173 1_2:-5002922 Msa0050970:CDS
TTTGTCTTTGTGTTGGGTTT+TGG 0.327489 1_2:-5007811 Msa0050970:five_prime_UTR
CTGCTGGTCTTATTGAATAT+AGG 0.329484 1_2:-5003291 Msa0050970:CDS
TGCTGGTCTTATTGAATATA+GGG 0.342259 1_2:-5003290 Msa0050970:CDS
GTTAGGACTAGGAGGAGATT+TGG 0.343908 1_2:+5007690 None:intergenic
CTAAACCCATCTCCATAAAC+AGG 0.350411 1_2:+5001078 None:intergenic
GCACGGCAACGGAAGCATTC+AGG 0.350540 1_2:+5004066 None:intergenic
CATGCATGGCTGCGGCTAAC+AGG 0.360998 1_2:-5001506 Msa0050970:intron
CTTCTTCTAATTGTGATTTG+TGG 0.366104 1_2:+5006067 None:intergenic
TTTCCATAAAGCATGCTATA+AGG 0.370626 1_2:-5003876 Msa0050970:CDS
TTCTTTCACAGATTACTTAC+CGG 0.370788 1_2:-5001554 Msa0050970:intron
TGAAATAGTTTGGTTTGGTT+TGG 0.373463 1_2:+5007393 None:intergenic
TGAGAAACAATGAGATAAAT+GGG 0.374290 1_2:+5000961 None:intergenic
GAGCTTCCTTCCATCCTTAT+GGG 0.381406 1_2:+5003046 None:intergenic
AACTACCCGTCACCTTGATA+TGG 0.383599 1_2:+5001007 None:intergenic
AATCTCCTCCTAGTCCTAAC+TGG 0.383809 1_2:-5007687 Msa0050970:five_prime_UTR
CTCTGAGAGGCAGAGTCCTC+TGG 0.389800 1_2:+5002464 None:intergenic
AAAATTGAAATAGTTTGGTT+TGG 0.392881 1_2:+5007388 None:intergenic
ACTGCAATTCTCATTCTATA+CGG 0.407169 1_2:-5002107 Msa0050970:CDS
GTGATTAGAAACGGAGGCTT+GGG 0.413167 1_2:-5000911 Msa0050970:three_prime_UTR
TGGCCGCTATCTAAATTGCT+TGG 0.419143 1_2:-5004103 Msa0050970:CDS
TAGTTTGGTTTGGTTTGGTT+TGG 0.421689 1_2:+5007398 None:intergenic
TAGACTTTCTTCTATTGCTC+TGG 0.423924 1_2:+5006032 None:intergenic
TTATTATTTAAAATCCAGTT+AGG 0.423952 1_2:+5007673 None:intergenic
ATTTCCCCTGTTTATGGAGA+TGG 0.425346 1_2:-5001084 Msa0050970:CDS
TCGTGCTATTGCGTTGTCTT+TGG 0.426970 1_2:-5006761 Msa0050970:CDS
TGCACCTCATAATCAGAGAT+TGG 0.431937 1_2:+5004033 None:intergenic
ATAAGACCAGCAGGGTTTGT+TGG 0.433014 1_2:+5003301 None:intergenic
GGCCGCTATCTAAATTGCTT+GGG 0.433359 1_2:-5004102 Msa0050970:CDS
TGCTTGCAGACATCACATTT+CGG 0.436101 1_2:+5003842 None:intergenic
AAACGGAGGCTTGGGTACTT+TGG 0.438070 1_2:-5000903 Msa0050970:three_prime_UTR
ACAAGTACCCCTGAAGTTGA+TGG 0.439731 1_2:+5006928 None:intergenic
CAGCGCGCAGTCAGTTTGTA+TGG 0.443392 1_2:+5002137 None:intergenic
TTTCCCCTGTTTATGGAGAT+GGG 0.444481 1_2:-5001083 Msa0050970:CDS
TCCCCAAGCTTCTTCTCAAA+AGG 0.447372 1_2:+5001135 None:intergenic
CCTACCAATCTCTGATTATG+AGG 0.447976 1_2:-5004037 Msa0050970:intron
AGGCAGAGTCCTCTGGTCTC+AGG 0.449022 1_2:+5002471 None:intergenic
TGTTGAAGAAGGTATTTGTC+AGG 0.458972 1_2:-5001268 Msa0050970:CDS
CCCATCGGGAAATACTGAAT+TGG 0.458973 1_2:+5005964 None:intergenic
TGCAATACTGAGATTGGTTA+TGG 0.459883 1_2:-5004123 Msa0050970:CDS
CACTGAATGAAGCGAGGGAG+GGG 0.460388 1_2:-5002887 Msa0050970:CDS
TGGGGTCTCCCTTCGTAAGA+AGG 0.461766 1_2:-5007779 Msa0050970:five_prime_UTR
ATTACTTGCCATCAACTTCA+GGG 0.464482 1_2:-5006936 Msa0050970:CDS
GTGTCTCGATTCTGCTATCA+TGG 0.464850 1_2:-5003015 Msa0050970:CDS
TATAGCATGCTTTATGGAAA+GGG 0.466425 1_2:+5003879 None:intergenic
AAAGGAAAGGGGTGTGTGTG+TGG 0.468682 1_2:+5007718 None:intergenic
CCTCCGTTTCTAATCACAAC+AGG 0.479584 1_2:+5000917 None:intergenic
TTTAAAATCCAGTTAGGACT+AGG 0.480746 1_2:+5007679 None:intergenic
AGTATTTCCCGATGGGGTAC+AGG 0.482157 1_2:-5005957 Msa0050970:intron
AATAATGCTGGTTCCAGAAT+GGG 0.483891 1_2:+5003263 None:intergenic
CAATAATGCTGGTTCCAGAA+TGG 0.490304 1_2:+5003262 None:intergenic
TTATAGCATGCTTTATGGAA+AGG 0.491264 1_2:+5003878 None:intergenic
GACGGGATATATTGCCCATA+AGG 0.491327 1_2:-5003060 Msa0050970:CDS
ACTCATACCTGTACCCCATC+GGG 0.492801 1_2:+5005950 None:intergenic
GGGAAATGTCTGATTCAATC+TGG 0.498038 1_2:+5001100 None:intergenic
GAGATATCTATACTTAATAT+GGG 0.506138 1_2:+5000983 None:intergenic
TGTGATTAGAAACGGAGGCT+TGG 0.508308 1_2:-5000912 Msa0050970:three_prime_UTR
CTATATTCAATAAGACCAGC+AGG 0.514177 1_2:+5003292 None:intergenic
TAGCCTGTTGTGATTAGAAA+CGG 0.517936 1_2:-5000920 Msa0050970:three_prime_UTR
AAGGAAAGGGGTGTGTGTGT+GGG 0.519406 1_2:+5007719 None:intergenic
TCTGAGCTTTCTTCTGCACC+AGG 0.519475 1_2:-5001222 Msa0050970:CDS
TTACATAATAGGATATGTGC+TGG 0.519801 1_2:-5004147 Msa0050970:intron
AACTCATACCTGTACCCCAT+CGG 0.520543 1_2:+5005949 None:intergenic
CCAATTCAGTATTTCCCGAT+GGG 0.521103 1_2:-5005964 Msa0050970:CDS
CTTCAGTATATCAGCATGAA+GGG 0.521307 1_2:+5002974 None:intergenic
GGATATATTGCCCATAAGGA+TGG 0.523228 1_2:-5003056 Msa0050970:CDS
TTCTTCCTCCTTCTTACGAA+GGG 0.523537 1_2:+5007771 None:intergenic
TGGTCTCAGGCATATGATAG+TGG 0.523864 1_2:+5002484 None:intergenic
GATTTGGAATACAAAGGAAA+GGG 0.527838 1_2:+5007706 None:intergenic
CTCATGAGCTAGAATCGATC+CGG 0.532124 1_2:+5001535 None:intergenic
AATGAATAAATGTGAAGAAG+AGG 0.532409 1_2:+5007573 None:intergenic
GCACTGAATGAAGCGAGGGA+GGG 0.533144 1_2:-5002888 Msa0050970:CDS
ATGAATAAATGTGAAGAAGA+GGG 0.533394 1_2:+5007574 None:intergenic
GTGTGTGTTGTGTGTGAACA+AGG 0.538655 1_2:-5007747 Msa0050970:five_prime_UTR
ACTTCAGTATATCAGCATGA+AGG 0.540309 1_2:+5002973 None:intergenic
CTAAGTCAAGATGTTGAAGA+AGG 0.540521 1_2:-5001279 Msa0050970:CDS
CCTCATAATCAGAGATTGGT+AGG 0.540834 1_2:+5004037 None:intergenic
CTTCGTAAGAAGGAGGAAGA+AGG 0.546511 1_2:-5007769 Msa0050970:five_prime_UTR
TTCGCAAGTATGGCCTAGAA+AGG 0.547798 1_2:-5001038 Msa0050970:CDS
GCTGGCTGCAATACTGAGAT+TGG 0.548263 1_2:-5004129 Msa0050970:CDS
TACATGCAGCCACAAGGGAC+GGG 0.551584 1_2:-5003077 Msa0050970:intron
TATGGAGATGGGTTTAGAGC+CGG 0.552548 1_2:-5001072 Msa0050970:CDS
ACCAATTCAGTATTTCCCGA+TGG 0.560239 1_2:-5005965 Msa0050970:CDS
CTCATGAGATGATGCATGCA+TGG 0.562277 1_2:-5001520 Msa0050970:CDS
GCTGATGAAAAGTTGCTGCC+TGG 0.562692 1_2:+5001204 None:intergenic
CTTCTGCAATTTCTTAACAC+AGG 0.562772 1_2:-5007344 Msa0050970:intron
CAGATTCCAACAAACCCTGC+TGG 0.563194 1_2:-5003307 Msa0050970:CDS
GCAATATATCCCGTCCCTTG+TGG 0.568174 1_2:+5003068 None:intergenic
CATGTGAAGGGCAATAATGC+TGG 0.569427 1_2:+5003251 None:intergenic
GTAGGTTGCAAGCACGGCAA+CGG 0.571499 1_2:+5004055 None:intergenic
AGGAAAGGGGTGTGTGTGTG+GGG 0.572520 1_2:+5007720 None:intergenic
GTGTTATCATGTTCATGTGA+AGG 0.573567 1_2:+5003238 None:intergenic
TCATTCTATACGGTCTTCCA+AGG 0.573571 1_2:-5002097 Msa0050970:intron
TTACATGCAGCCACAAGGGA+CGG 0.574092 1_2:-5003078 Msa0050970:intron
GCATCATATACATCTAAGAC+AGG 0.574513 1_2:-5001168 Msa0050970:CDS
GTTTCTAATCACAACAGGCT+AGG 0.574749 1_2:+5000922 None:intergenic
TCGCTCACAGCTACAACAGC+GGG 0.574792 1_2:+5003213 None:intergenic
TCTGATCATAAGGTTTCTGA+AGG 0.579206 1_2:-5006985 Msa0050970:CDS
AAGGACCCTTCACCATATCA+AGG 0.581020 1_2:-5001019 Msa0050970:CDS
CCGTCACCTTGATATGGTGA+AGG 0.582188 1_2:+5001013 None:intergenic
TTGGAGTCACCTCCCAAACA+TGG 0.583689 1_2:-5006006 Msa0050970:CDS
CTGTTGTAGCTGTGAGCGAA+TGG 0.584516 1_2:-5003209 Msa0050970:CDS
TGCAGACATCACATTTCGGA+TGG 0.584761 1_2:+5003846 None:intergenic
CTTCTTCCTCCTTCTTACGA+AGG 0.587409 1_2:+5007770 None:intergenic
TTCGCTCACAGCTACAACAG+CGG 0.587961 1_2:+5003212 None:intergenic
TGTCTTTCAACCAAAAGTAG+AGG 0.588772 1_2:+5002912 None:intergenic
ACTGAATGAAGCGAGGGAGG+GGG 0.590431 1_2:-5002886 Msa0050970:CDS
TCTCTTTACATGCAGCCACA+AGG 0.590442 1_2:-5003083 Msa0050970:intron
AGCACTGAATGAAGCGAGGG+AGG 0.591672 1_2:-5002889 Msa0050970:CDS
TGTTATCATGTTCATGTGAA+GGG 0.592374 1_2:+5003239 None:intergenic
TTATCATTTCCATGTTTGGG+AGG 0.593608 1_2:+5005997 None:intergenic
CTTCACCATATCAAGGTGAC+GGG 0.594001 1_2:-5001012 Msa0050970:CDS
ATATTGCCCATAAGGATGGA+AGG 0.594506 1_2:-5003052 Msa0050970:CDS
CGTCACCTTGATATGGTGAA+GGG 0.595573 1_2:+5001014 None:intergenic
CCAAGCTTCTTCTCAAAAGG+AGG 0.596754 1_2:+5001138 None:intergenic
AGATGATGCATGCATGGCTG+CGG 0.598462 1_2:-5001514 Msa0050970:CDS
AGATTTGGAATACAAAGGAA+AGG 0.599680 1_2:+5007705 None:intergenic
TTACTTGCCATCAACTTCAG+GGG 0.600696 1_2:-5006935 Msa0050970:intron
CCTTCACCATATCAAGGTGA+CGG 0.608624 1_2:-5001013 Msa0050970:CDS
AGATTGGTAGGTTGCAAGCA+CGG 0.611730 1_2:+5004049 None:intergenic
AATCAATAATACTTGAGCAA+AGG 0.612114 1_2:+5000830 None:intergenic
CTCTTTACATGCAGCCACAA+GGG 0.615445 1_2:-5003082 Msa0050970:intron
AAAATCCAGTTAGGACTAGG+AGG 0.621731 1_2:+5007682 None:intergenic
GGAGGAGATTTGGAATACAA+AGG 0.628197 1_2:+5007700 None:intergenic
CACCCAAGCAATTTAGATAG+CGG 0.630015 1_2:+5004100 None:intergenic
ATATGATGCAGATGAGGATG+AGG 0.632065 1_2:+5001182 None:intergenic
GACAAGCACTGAATGAAGCG+AGG 0.639156 1_2:-5002893 Msa0050970:CDS
ATTTGGAATACAAAGGAAAG+GGG 0.645378 1_2:+5007707 None:intergenic
ACAAGCACTGAATGAAGCGA+GGG 0.649587 1_2:-5002892 Msa0050970:CDS
TAAACCCATCTCCATAAACA+GGG 0.651389 1_2:+5001079 None:intergenic
TTCAGTATATCAGCATGAAG+GGG 0.658616 1_2:+5002975 None:intergenic
AGATGTATATGATGCAGATG+AGG 0.664075 1_2:+5001176 None:intergenic
CAATTCAGTATTTCCCGATG+GGG 0.664407 1_2:-5005963 Msa0050970:CDS
TTGTAGCTGTGAGCGAATGG+AGG 0.666039 1_2:-5003206 Msa0050970:intron
CAGAGGACTCTGCCTCTCAG+AGG 0.667518 1_2:-5002463 Msa0050970:CDS
GAAAGGGTAATTTCCAGACG+TGG 0.673323 1_2:+5003895 None:intergenic
CAGTGCTGAGTTCCTCTGAG+AGG 0.678909 1_2:+5002451 None:intergenic
TATCATATGCCTGAGACCAG+AGG 0.682286 1_2:-5002480 Msa0050970:CDS
GGTCTCCCTTCGTAAGAAGG+AGG 0.683074 1_2:-5007776 Msa0050970:five_prime_UTR
CCTGTTGTGATTAGAAACGG+AGG 0.683136 1_2:-5000917 Msa0050970:three_prime_UTR
TATATTCAATAAGACCAGCA+GGG 0.688376 1_2:+5003293 None:intergenic
CTGATCATAAGGTTTCTGAA+GGG 0.689401 1_2:-5006984 Msa0050970:CDS
AAACCCATCTCCATAAACAG+GGG 0.693477 1_2:+5001080 None:intergenic
TGTGTTGTGTGTGAACAAGG+AGG 0.770683 1_2:-5007744 Msa0050970:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGTTTTTTTTTTACTA+TGG - chr1_2:5002410-5002429 Msa0050970:intron 10.0%
!!! TTTTGTTTTTTTTTTACTAT+GGG - chr1_2:5002411-5002430 Msa0050970:intron 10.0%
!!! AAAAAACAAAAAATTGATTT+TGG - chr1_2:5003077-5003096 Msa0050970:intron 10.0%
!!! AAAAAACAAAAAAATGATTT+TGG + chr1_2:5003815-5003834 None:intergenic 10.0%
!! AATCTAATTATTTACATAAT+AGG - chr1_2:5004456-5004475 Msa0050970:intron 10.0%
!! TATATATTACCAAAAATTAA+CGG + chr1_2:5005278-5005297 None:intergenic 10.0%
!! TAATATAAAAATATTTAAGC+TGG + chr1_2:5005439-5005458 None:intergenic 10.0%
!! AATTAATAATTTGATTGTAA+CGG - chr1_2:5005799-5005818 Msa0050970:intron 10.0%
!! TATATTTATATATGTATGTT+AGG + chr1_2:5006215-5006234 None:intergenic 10.0%
!!! TTATTATTTAAAATCCAGTT+AGG + chr1_2:5000944-5000963 None:intergenic 15.0%
!! TTACACAAAAAAAAAAAAGA+GGG + chr1_2:5001368-5001387 None:intergenic 15.0%
!!! ATTAATTTTAGGGTTTATAT+TGG + chr1_2:5002387-5002406 None:intergenic 15.0%
!!! TTGATTTTGGAAATTAAAAA+AGG - chr1_2:5003090-5003109 Msa0050970:intron 15.0%
!!! TGATTTTGGAAATTAAAAAA+GGG - chr1_2:5003091-5003110 Msa0050970:intron 15.0%
!! AAAATAAACAGAAAATTGAT+GGG + chr1_2:5004345-5004364 None:intergenic 15.0%
!!! TTTTACATATCAAAAAGTAA+AGG + chr1_2:5004868-5004887 None:intergenic 15.0%
!!! TACTTTTTGATATGTAAAAA+TGG - chr1_2:5004869-5004888 Msa0050970:intron 15.0%
!! CATTTATTTGATAAATTATG+TGG + chr1_2:5005913-5005932 None:intergenic 15.0%
!! GTTGAACAAAAAATAAAAAA+AGG - chr1_2:5006816-5006835 Msa0050970:intron 15.0%
!! CTATTAAAATGAATAAATGA+TGG + chr1_2:5007223-5007242 None:intergenic 15.0%
!! AAAATTGAAATAGTTTGGTT+TGG + chr1_2:5001229-5001248 None:intergenic 20.0%
!! GTAACAAAATTGAAATAGTT+TGG + chr1_2:5001234-5001253 None:intergenic 20.0%
!! CTTACACAAAAAAAAAAAAG+AGG + chr1_2:5001369-5001388 None:intergenic 20.0%
!!! ATAGCTATTTTTTTGATTGA+TGG - chr1_2:5001580-5001599 Msa0050970:intron 20.0%
!!! TAGCTATTTTTTTGATTGAT+GGG - chr1_2:5001581-5001600 Msa0050970:intron 20.0%
!! TTTCTAAATGATTTCAAACA+TGG + chr1_2:5002353-5002372 None:intergenic 20.0%
!!! GTTTGAAATCATTTAGAAAT+TGG - chr1_2:5002354-5002373 Msa0050970:intron 20.0%
!! AATAGAAGAAAGTCTAAATT+TGG - chr1_2:5002589-5002608 Msa0050970:intron 20.0%
!! AAAAATTACATTTACACACA+TGG + chr1_2:5003057-5003076 None:intergenic 20.0%
!!! ATTTTGGAAATTAAGAGAAA+AGG + chr1_2:5003799-5003818 None:intergenic 20.0%
!! AATTTATGAACAAATAACCA+TGG - chr1_2:5004224-5004243 Msa0050970:intron 20.0%
!! ATTTATGAACAAATAACCAT+GGG - chr1_2:5004225-5004244 Msa0050970:intron 20.0%
!! GAAAATAAACAGAAAATTGA+TGG + chr1_2:5004346-5004365 None:intergenic 20.0%
!! ATTATTCTATTATTTCAGCT+TGG - chr1_2:5004379-5004398 Msa0050970:intron 20.0%
!! ATTAAAATGAGAAATTTGAC+TGG + chr1_2:5004621-5004640 None:intergenic 20.0%
!!! CATTTTAATGTTTTTGTAAC+TGG - chr1_2:5004632-5004651 Msa0050970:intron 20.0%
!! AGAATGTAAAAAGTTGTTAA+GGG + chr1_2:5004813-5004832 None:intergenic 20.0%
!! AAGAATGTAAAAAGTTGTTA+AGG + chr1_2:5004814-5004833 None:intergenic 20.0%
!!! TTTTGATATGTAAAAATGGA+TGG - chr1_2:5004873-5004892 Msa0050970:intron 20.0%
!! TTTGATATGTAAAAATGGAT+GGG - chr1_2:5004874-5004893 Msa0050970:intron 20.0%
!! AATAAACATCATGAATGAAA+TGG + chr1_2:5005175-5005194 None:intergenic 20.0%
!! TCCATGTTACAATTAAATTA+AGG - chr1_2:5005200-5005219 Msa0050970:intron 20.0%
!! AAATCTAACACTAACAAAAA+TGG + chr1_2:5005861-5005880 None:intergenic 20.0%
!! AGATACAAACAAATCTAATT+TGG - chr1_2:5005977-5005996 Msa0050970:CDS 20.0%
!! TATTACTTATTACAAGCATT+AGG + chr1_2:5006006-5006025 None:intergenic 20.0%
!! ATATAAATATATAAGCGACA+TGG - chr1_2:5006224-5006243 Msa0050970:intron 20.0%
!! AAAACATCAAATTATTACCT+TGG + chr1_2:5006537-5006556 None:intergenic 20.0%
!! ACAAACGTAAAATATTATCT+GGG + chr1_2:5006619-5006638 None:intergenic 20.0%
!! AACCTTCATATATACAAAAT+TGG + chr1_2:5007307-5007326 None:intergenic 20.0%
!!! TTTGTATATATGAAGGTTTT+CGG - chr1_2:5007309-5007328 Msa0050970:intron 20.0%
!! GAGATATCTATACTTAATAT+GGG + chr1_2:5007634-5007653 None:intergenic 20.0%
! ATGAATAAATGTGAAGAAGA+GGG + chr1_2:5001043-5001062 None:intergenic 25.0%
! AATGAATAAATGTGAAGAAG+AGG + chr1_2:5001044-5001063 None:intergenic 25.0%
!!! TCAATTTTTCAAATTACCAC+CGG - chr1_2:5001439-5001458 Msa0050970:intron 25.0%
!!! TATTTTTTTGATTGATGGGT+TGG - chr1_2:5001585-5001604 Msa0050970:intron 25.0%
!! TGGCTTAGTAGAATTTTTAA+AGG - chr1_2:5001605-5001624 Msa0050970:intron 25.0%
!! GGCTTAGTAGAATTTTTAAA+GGG - chr1_2:5001606-5001625 Msa0050970:intron 25.0%
! CTTGTTAATGCAATTTGTAA+TGG - chr1_2:5001704-5001723 Msa0050970:intron 25.0%
!!! ATGGTTTAGAATTTTTTGTC+TGG - chr1_2:5001723-5001742 Msa0050970:intron 25.0%
! CAGAAAGTGAAAAATGTAAA+AGG - chr1_2:5001887-5001906 Msa0050970:intron 25.0%
! AATCACAATTCGATGATAAA+AGG + chr1_2:5002103-5002122 None:intergenic 25.0%
! TTTATCATCGAATTGTGATT+AGG - chr1_2:5002103-5002122 Msa0050970:CDS 25.0%
! ATTTCATGCTTGAATGTAAT+AGG - chr1_2:5002193-5002212 Msa0050970:intron 25.0%
! ATGATAACTGATAGTAAATG+TGG - chr1_2:5002216-5002235 Msa0050970:intron 25.0%
! GATATTGTAGCTATCATATA+CGG + chr1_2:5002295-5002314 None:intergenic 25.0%
! ATGTTATCATTTCCATGTTT+GGG + chr1_2:5002623-5002642 None:intergenic 25.0%
!! ATGAATCATCAAGGATATTT+TGG - chr1_2:5002764-5002783 Msa0050970:intron 25.0%
!!! GAATGTAGCTTTAAAAAAAC+TGG - chr1_2:5002820-5002839 Msa0050970:intron 25.0%
! ATCGCTCAATTAAAAACATA+GGG + chr1_2:5002935-5002954 None:intergenic 25.0%
! AATCGCTCAATTAAAAACAT+AGG + chr1_2:5003956-5003975 None:intergenic 25.0%
! AAATCGCTCAATTAAAAACA+TGG - chr1_2:5003955-5003974 Msa0050970:intron 25.0%
! AATCGCTCAATTAAAAACAT+GGG - chr1_2:5003956-5003975 Msa0050970:intron 25.0%
! ATTTGAAGAGGATAAAAAGA+AGG + chr1_2:5004041-5004060 None:intergenic 25.0%
! TTTATGAACAAATAACCATG+GGG - chr1_2:5004226-5004245 Msa0050970:intron 25.0%
! ATTCAATGCTCATAAACAAA+GGG - chr1_2:5004307-5004326 Msa0050970:intron 25.0%
!!! TTCTGTTTATTTTCAGTTGA+TGG - chr1_2:5004352-5004371 Msa0050970:intron 25.0%
! GAATGTAAAAAGTTGTTAAG+GGG + chr1_2:5004812-5004831 None:intergenic 25.0%
! TTGATATGTAAAAATGGATG+GGG - chr1_2:5004875-5004894 Msa0050970:intron 25.0%
! CTAGTATCTAAATTAGCATT+TGG + chr1_2:5004964-5004983 None:intergenic 25.0%
! GCCTTAATTTAATTGTAACA+TGG + chr1_2:5005204-5005223 None:intergenic 25.0%
! TATTAATCATATGCTTGCTT+AGG - chr1_2:5005454-5005473 Msa0050970:intron 25.0%
! ATTAATCATATGCTTGCTTA+GGG - chr1_2:5005455-5005474 Msa0050970:intron 25.0%
!! GTAAGTTGAATGAAAATGTA+TGG - chr1_2:5005477-5005496 Msa0050970:intron 25.0%
!!! CTTGATATTTTAGAGCATTT+TGG + chr1_2:5006038-5006057 None:intergenic 25.0%
! CTTAACTAGTTCACAATTAA+AGG - chr1_2:5006066-5006085 Msa0050970:CDS 25.0%
! ATCTTATTCTTTATCTTCAC+AGG - chr1_2:5006106-5006125 Msa0050970:intron 25.0%
! TCTTATTCTTTATCTTCACA+GGG - chr1_2:5006107-5006126 Msa0050970:intron 25.0%
! TTATATATGTATGTTAGGAC+AGG + chr1_2:5006210-5006229 None:intergenic 25.0%
! TCATTTATGATAAGATCCAA+CGG - chr1_2:5006270-5006289 Msa0050970:intron 25.0%
! TGAAAACTGATCAAGTTTAA+AGG + chr1_2:5006412-5006431 None:intergenic 25.0%
! GACAAACGTAAAATATTATC+TGG + chr1_2:5006620-5006639 None:intergenic 25.0%
! ACATAGCTGAATAAAAAAAG+AGG - chr1_2:5006697-5006716 Msa0050970:intron 25.0%
! CTAGATGAATACCAATAAAA+AGG + chr1_2:5007152-5007171 None:intergenic 25.0%
!!! AATCCCATTTTATTTCATTG+CGG - chr1_2:5007265-5007284 Msa0050970:intron 25.0%
!! TGCCAATTTTGTATATATGA+AGG - chr1_2:5007302-5007321 Msa0050970:intron 25.0%
! GGAGATATCTATACTTAATA+TGG + chr1_2:5007635-5007654 None:intergenic 25.0%
! TGAGAAACAATGAGATAAAT+GGG + chr1_2:5007656-5007675 None:intergenic 25.0%
! ATGAGAAACAATGAGATAAA+TGG + chr1_2:5007657-5007676 None:intergenic 25.0%
! AATCAATAATACTTGAGCAA+AGG + chr1_2:5007787-5007806 None:intergenic 25.0%
! ATTTGGAATACAAAGGAAAG+GGG + chr1_2:5000910-5000929 None:intergenic 30.0%
! GATTTGGAATACAAAGGAAA+GGG + chr1_2:5000911-5000930 None:intergenic 30.0%
! AGATTTGGAATACAAAGGAA+AGG + chr1_2:5000912-5000931 None:intergenic 30.0%
! TTTAAAATCCAGTTAGGACT+AGG + chr1_2:5000938-5000957 None:intergenic 30.0%
!! TGAAATAGTTTGGTTTGGTT+TGG + chr1_2:5001224-5001243 None:intergenic 30.0%
AAAAAAAAAGAGGGTTTAGC+AGG + chr1_2:5001359-5001378 None:intergenic 30.0%
ATGTTGATGTTTATTTGTGC+AGG - chr1_2:5001534-5001553 Msa0050970:CDS 30.0%
TGTTGATGTTTATTTGTGCA+GGG - chr1_2:5001535-5001554 Msa0050970:CDS 30.0%
!! TTTTAAAGGGTCTGATCATA+AGG - chr1_2:5001619-5001638 Msa0050970:intron 30.0%
!!! TAGAATTTTTTGTCTGGTGT+TGG - chr1_2:5001729-5001748 Msa0050970:intron 30.0%
!!! TTTGATAGGGTTTTGAATGT+AGG - chr1_2:5001796-5001815 Msa0050970:intron 30.0%
GATTATTGCATCTTCTTGAA+AGG - chr1_2:5001930-5001949 Msa0050970:intron 30.0%
CTGAGATTGAAGTTAAGTTA+TGG - chr1_2:5001991-5002010 Msa0050970:intron 30.0%
AAAGGAGAAATGGAAAAAAC+AGG + chr1_2:5002085-5002104 None:intergenic 30.0%
TTCGATGATAAAAGGAGAAA+TGG + chr1_2:5002095-5002114 None:intergenic 30.0%
GAAATTCAATAGTAAGCAAC+TGG + chr1_2:5002178-5002197 None:intergenic 30.0%
GGAATTTCTGCTTATATTGA+TGG - chr1_2:5002432-5002451 Msa0050970:intron 30.0%
CTTCTTCTAATTGTGATTTG+TGG + chr1_2:5002550-5002569 None:intergenic 30.0%
CATGTTATCATTTCCATGTT+TGG + chr1_2:5002624-5002643 None:intergenic 30.0%
GATGATCTTATGAATCATCA+AGG - chr1_2:5002755-5002774 Msa0050970:intron 30.0%
!!! ATCATCAAGGATATTTTGGT+AGG - chr1_2:5002768-5002787 Msa0050970:intron 30.0%
! ATACACTGTTCGTTCTTTTT+AGG - chr1_2:5002860-5002879 Msa0050970:intron 30.0%
ACATCATCACTAAAACACAT+GGG + chr1_2:5003894-5003913 None:intergenic 30.0%
TCTCAACAATAAGTGAAGAT+TGG - chr1_2:5003638-5003657 Msa0050970:intron 30.0%
TCTCAACAATAAGTGAAGAT+TGG - chr1_2:5003638-5003657 Msa0050970:intron 30.0%
ACATCATCACTAAAACACAT+GGG - chr1_2:5003894-5003913 Msa0050970:CDS 30.0%
! TTAGTACAAGGTATTTGAAG+AGG + chr1_2:5004053-5004072 None:intergenic 30.0%
CATTCAATGCTCATAAACAA+AGG - chr1_2:5004306-5004325 Msa0050970:intron 30.0%
TTACATAATAGGATATGTGC+TGG - chr1_2:5004467-5004486 Msa0050970:intron 30.0%
! TGGTTTTTATTCTGTACTCA+AGG - chr1_2:5004652-5004671 Msa0050970:intron 30.0%
! TCTGTACTCAAGGTTTTTAT+TGG - chr1_2:5004662-5004681 Msa0050970:intron 30.0%
TATAGCATGCTTTATGGAAA+GGG + chr1_2:5004738-5004757 None:intergenic 30.0%
TTATAGCATGCTTTATGGAA+AGG + chr1_2:5004739-5004758 None:intergenic 30.0%
TTTCCATAAAGCATGCTATA+AGG - chr1_2:5004738-5004757 Msa0050970:intron 30.0%
TTTCCTTATAGCATGCTTTA+TGG + chr1_2:5004744-5004763 None:intergenic 30.0%
ATCTAAATTAGCATTTGGCA+TGG + chr1_2:5004959-5004978 None:intergenic 30.0%
TATATTCAATAAGACCAGCA+GGG + chr1_2:5005324-5005343 None:intergenic 30.0%
!! TGCTGGTCTTATTGAATATA+GGG - chr1_2:5005324-5005343 Msa0050970:intron 30.0%
TGTTATCATGTTCATGTGAA+GGG + chr1_2:5005378-5005397 None:intergenic 30.0%
!!! TTCTGAGGAACTATTTTTTG+TGG - chr1_2:5005832-5005851 Msa0050970:intron 30.0%
GATTTGAAAATGCTATTCTC+TGG - chr1_2:5005876-5005895 Msa0050970:intron 30.0%
!!! TATTTTAGAGCATTTTGGCA+GGG + chr1_2:5006033-5006052 None:intergenic 30.0%
!!! ATATTTTAGAGCATTTTGGC+AGG + chr1_2:5006034-5006053 None:intergenic 30.0%
AGATAAAGAATAAGATACGC+AGG + chr1_2:5006102-5006121 None:intergenic 30.0%
ACTGCAATTCTCATTCTATA+CGG - chr1_2:5006507-5006526 Msa0050970:intron 30.0%
ACCTCACAAAATATCTACAA+CGG + chr1_2:5006955-5006974 None:intergenic 30.0%
TTCTTTCACAGATTACTTAC+CGG - chr1_2:5007060-5007079 Msa0050970:five_prime_UTR 30.0%
! CTTTCTCGATTCCTTTTTAT+TGG - chr1_2:5007138-5007157 Msa0050970:intron 30.0%
!!! TTTGTGTTGGGTTTTGGTTT+TGG - chr1_2:5000809-5000828 Msa0050970:three_prime_UTR 35.0%
!!! TTGGGTTTTGGTTTTGGTTT+TGG - chr1_2:5000815-5000834 Msa0050970:three_prime_UTR 35.0%
!!! TGGGTTTTGGTTTTGGTTTT+GGG - chr1_2:5000816-5000835 Msa0050970:three_prime_UTR 35.0%
GTGAAGTGTGTGATCTAATT+TGG + chr1_2:5001194-5001213 None:intergenic 35.0%
!! TAGTTTGGTTTGGTTTGGTT+TGG + chr1_2:5001219-5001238 None:intergenic 35.0%
CTTCTGCAATTTCTTAACAC+AGG - chr1_2:5001270-5001289 Msa0050970:CDS 35.0%
TCTGATCATAAGGTTTCTGA+AGG - chr1_2:5001629-5001648 Msa0050970:intron 35.0%
CTGATCATAAGGTTTCTGAA+GGG - chr1_2:5001630-5001649 Msa0050970:intron 35.0%
TATTACTTGCCATCAACTTC+AGG - chr1_2:5001677-5001696 Msa0050970:intron 35.0%
ATTACTTGCCATCAACTTCA+GGG - chr1_2:5001678-5001697 Msa0050970:intron 35.0%
!!! GGTTTTGAATGTAGGATGAT+TGG - chr1_2:5001804-5001823 Msa0050970:intron 35.0%
TGCATCTTCTTGAAAGGATA+TGG - chr1_2:5001936-5001955 Msa0050970:intron 35.0%
! TCTTGAAAGGATATGGATTG+CGG - chr1_2:5001943-5001962 Msa0050970:intron 35.0%
! ATAGTAAGCAACTGGTTTCT+TGG + chr1_2:5002170-5002189 None:intergenic 35.0%
TAGACTTTCTTCTATTGCTC+TGG + chr1_2:5002585-5002604 None:intergenic 35.0%
TTATCATTTCCATGTTTGGG+AGG + chr1_2:5002620-5002639 None:intergenic 35.0%
!!! TCAAGGATATTTTGGTAGGA+AGG - chr1_2:5002772-5002791 Msa0050970:intron 35.0%
!!! CAAGGATATTTTGGTAGGAA+GGG - chr1_2:5002773-5002792 Msa0050970:intron 35.0%
!!! AAGGATATTTTGGTAGGAAG+GGG - chr1_2:5002774-5002793 Msa0050970:intron 35.0%
ACAATTGACAAAAGATAGGG+GGG + chr1_2:5002901-5002920 None:intergenic 35.0%
CACAATTGACAAAAGATAGG+GGG + chr1_2:5002902-5002921 None:intergenic 35.0%
GCACAATTGACAAAAGATAG+GGG + chr1_2:5002903-5002922 None:intergenic 35.0%
CGCACAATTGACAAAAGATA+GGG + chr1_2:5002904-5002923 None:intergenic 35.0%
TCGCACAATTGACAAAAGAT+AGG + chr1_2:5003987-5004006 None:intergenic 35.0%
ATCATCACTAAAACACATGG+GGG + chr1_2:5003896-5003915 None:intergenic 35.0%
CATCATCACTAAAACACATG+GGG + chr1_2:5003895-5003914 None:intergenic 35.0%
CACATCATCACTAAAACACA+TGG + chr1_2:5003893-5003912 None:intergenic 35.0%
! GTAGAATTTGAAACCTGCAA+TGG + chr1_2:5003182-5003201 None:intergenic 35.0%
GTGGTATAGTTTGAAGGAAT+TGG - chr1_2:5003507-5003526 Msa0050970:intron 35.0%
CACATCATCACTAAAACACA+TGG - chr1_2:5003893-5003912 Msa0050970:CDS 35.0%
CATCATCACTAAAACACATG+GGG - chr1_2:5003895-5003914 Msa0050970:CDS 35.0%
ATCATCACTAAAACACATGG+GGG - chr1_2:5003896-5003915 Msa0050970:CDS 35.0%
TCGCACAATTGACAAAAGAT+TGG - chr1_2:5003987-5004006 Msa0050970:intron 35.0%
CGCACAATTGACAAAAGATT+GGG - chr1_2:5003988-5004007 Msa0050970:intron 35.0%
GCACAATTGACAAAAGATTG+GGG - chr1_2:5003989-5004008 Msa0050970:intron 35.0%
CACAATTGACAAAAGATTGG+GGG - chr1_2:5003990-5004009 Msa0050970:intron 35.0%
ACAATTGACAAAAGATTGGG+GGG - chr1_2:5003991-5004010 Msa0050970:intron 35.0%
TTTGTGCAGCAGTCTATATT+CGG + chr1_2:5004083-5004102 None:intergenic 35.0%
TAAGTTCCGTATCCAAAGAA+GGG - chr1_2:5004259-5004278 Msa0050970:intron 35.0%
TACAAAAGCTATCCCTTCTT+TGG + chr1_2:5004274-5004293 None:intergenic 35.0%
! TGCAATACTGAGATTGGTTA+TGG - chr1_2:5004491-5004510 Msa0050970:intron 35.0%
! TGAGAAATTTGACTGGTCAA+AGG + chr1_2:5004614-5004633 None:intergenic 35.0%
GGAAAACGTTATCCAGATTA+CGG - chr1_2:5004903-5004922 Msa0050970:intron 35.0%
TTATCCAGATTACGGTCTTA+TGG - chr1_2:5004911-5004930 Msa0050970:intron 35.0%
! TATCCAGATTACGGTCTTAT+GGG - chr1_2:5004912-5004931 Msa0050970:intron 35.0%
TTGGCATGGTTATACTCATA+AGG + chr1_2:5004945-5004964 None:intergenic 35.0%
! TCTGAACAAGCTTTTATCTC+TGG - chr1_2:5005057-5005076 Msa0050970:intron 35.0%
! CTGAACAAGCTTTTATCTCT+GGG - chr1_2:5005058-5005077 Msa0050970:intron 35.0%
GCATTTCTTATACCTGCAAT+TGG - chr1_2:5005124-5005143 Msa0050970:intron 35.0%
TTTCTTATACCTGCAATTGG+AGG - chr1_2:5005127-5005146 Msa0050970:intron 35.0%
TTCTTATACCTGCAATTGGA+GGG - chr1_2:5005128-5005147 Msa0050970:intron 35.0%
TACCAAAAATTAACGGCAAC+AGG + chr1_2:5005271-5005290 None:intergenic 35.0%
CTATATTCAATAAGACCAGC+AGG + chr1_2:5005325-5005344 None:intergenic 35.0%
!! CTGCTGGTCTTATTGAATAT+AGG - chr1_2:5005323-5005342 Msa0050970:intron 35.0%
!! AATAATGCTGGTTCCAGAAT+GGG + chr1_2:5005354-5005373 None:intergenic 35.0%
GTGTTATCATGTTCATGTGA+AGG + chr1_2:5005379-5005398 None:intergenic 35.0%
TTCAGTATATCAGCATGAAG+GGG + chr1_2:5005642-5005661 None:intergenic 35.0%
CTTCAGTATATCAGCATGAA+GGG + chr1_2:5005643-5005662 None:intergenic 35.0%
ACTTCAGTATATCAGCATGA+AGG + chr1_2:5005644-5005663 None:intergenic 35.0%
TGTCTTTCAACCAAAAGTAG+AGG + chr1_2:5005705-5005724 None:intergenic 35.0%
!! AACGGCATTAATTTGTTCTG+AGG - chr1_2:5005817-5005836 Msa0050970:intron 35.0%
!!! ATTTTAGAGCATTTTGGCAG+GGG + chr1_2:5006032-5006051 None:intergenic 35.0%
!! TTTTCAAGAAGACCTAGACT+CGG - chr1_2:5006426-5006445 Msa0050970:intron 35.0%
! TCCGTTGTAGATATTTTGTG+AGG - chr1_2:5006951-5006970 Msa0050970:CDS 35.0%
CAGCCGCAATGAAATAAAAT+GGG + chr1_2:5007271-5007290 None:intergenic 35.0%
ACAGCCGCAATGAAATAAAA+TGG + chr1_2:5007272-5007291 None:intergenic 35.0%
CTAAGTCAAGATGTTGAAGA+AGG - chr1_2:5007335-5007354 Msa0050970:intron 35.0%
!! TGTTGAAGAAGGTATTTGTC+AGG - chr1_2:5007346-5007365 Msa0050970:five_prime_UTR 35.0%
!!! AGAAGGTATTTGTCAGGTTT+TGG - chr1_2:5007352-5007371 Msa0050970:five_prime_UTR 35.0%
AGATGTATATGATGCAGATG+AGG + chr1_2:5007441-5007460 None:intergenic 35.0%
! GCATCATATACATCTAAGAC+AGG - chr1_2:5007446-5007465 Msa0050970:five_prime_UTR 35.0%
TAAACCCATCTCCATAAACA+GGG + chr1_2:5007538-5007557 None:intergenic 35.0%
TAGCCTGTTGTGATTAGAAA+CGG - chr1_2:5007694-5007713 Msa0050970:five_prime_UTR 35.0%
TACAAAAAAATCAGCACTGC+TGG + chr1_2:5007747-5007766 None:intergenic 35.0%
!!! GGGTTTTGGTTTTGGTTTTG+GGG - chr1_2:5000817-5000836 Msa0050970:three_prime_UTR 40.0%
TTCTTCCTCCTTCTTACGAA+GGG + chr1_2:5000846-5000865 None:intergenic 40.0%
! GGAGGAGATTTGGAATACAA+AGG + chr1_2:5000917-5000936 None:intergenic 40.0%
AAAATCCAGTTAGGACTAGG+AGG + chr1_2:5000935-5000954 None:intergenic 40.0%
AAGACATGAACATCTTGTCG+CGG - chr1_2:5001386-5001405 Msa0050970:intron 40.0%
TGATGTTTATTTGTGCAGGG+AGG - chr1_2:5001538-5001557 Msa0050970:CDS 40.0%
TTACTTGCCATCAACTTCAG+GGG - chr1_2:5001679-5001698 Msa0050970:intron 40.0%
!!! ATTGTGTCGCGTGTTTTGAT+AGG - chr1_2:5001782-5001801 Msa0050970:intron 40.0%
!!! TTGTGTCGCGTGTTTTGATA+GGG - chr1_2:5001783-5001802 Msa0050970:intron 40.0%
CTGGTTTCTTGGTTGATCAA+AGG + chr1_2:5002159-5002178 None:intergenic 40.0%
! GTGATTTGTGGTCTGTAAGA+TGG + chr1_2:5002538-5002557 None:intergenic 40.0%
ACCAATTCAGTATTTCCCGA+TGG - chr1_2:5002649-5002668 Msa0050970:intron 40.0%
CCAATTCAGTATTTCCCGAT+GGG - chr1_2:5002650-5002669 Msa0050970:intron 40.0%
CAATTCAGTATTTCCCGATG+GGG - chr1_2:5002651-5002670 Msa0050970:intron 40.0%
! GAATTTGAAACCTGCAATGG+AGG + chr1_2:5003179-5003198 None:intergenic 40.0%
!! TCTTCTTTGAGGTTCTGTTC+CGG + chr1_2:5003291-5003310 None:intergenic 40.0%
! ACGCATTTTGCTCTTCTTTG+AGG + chr1_2:5003302-5003321 None:intergenic 40.0%
CACAATTCCACTCGTTTCTA+AGG - chr1_2:5003342-5003361 Msa0050970:intron 40.0%
ATCAAGATCGAACACGTTGA+CGG - chr1_2:5003379-5003398 Msa0050970:intron 40.0%
GAATTGGAGAATGTGACAGA+TGG - chr1_2:5003523-5003542 Msa0050970:intron 40.0%
! GAATGTGACAGATGGATTTG+CGG - chr1_2:5003531-5003550 Msa0050970:intron 40.0%
ATGATAGGAGAAGGAGGATA+TGG - chr1_2:5003562-5003581 Msa0050970:intron 40.0%
GGATATGGAATTGTATGCAG+AGG - chr1_2:5003577-5003596 Msa0050970:intron 40.0%
TGCAGAGGAATTCTTCAAGA+TGG - chr1_2:5003592-5003611 Msa0050970:intron 40.0%
CAATTGACAAAAGATTGGGG+GGG - chr1_2:5003992-5004011 Msa0050970:intron 40.0%
AATTGACAAAAGATTGGGGG+GGG - chr1_2:5003993-5004012 Msa0050970:intron 40.0%
TTCGGCTAGTGTTTAGTACA+AGG + chr1_2:5004065-5004084 None:intergenic 40.0%
CACGCACACGTATAAATAAC+AGG + chr1_2:5004118-5004137 None:intergenic 40.0%
ATTTGCCAAGTCAGAAAGTG+TGG - chr1_2:5004160-5004179 Msa0050970:intron 40.0%
! TTTGCCAAGTCAGAAAGTGT+GGG - chr1_2:5004161-5004180 Msa0050970:intron 40.0%
ACTTAGTTCATAGTACCCCA+TGG + chr1_2:5004244-5004263 None:intergenic 40.0%
CTAAGTTCCGTATCCAAAGA+AGG - chr1_2:5004258-5004277 Msa0050970:intron 40.0%
AGCTATCCCTTCTTTGGATA+CGG + chr1_2:5004268-5004287 None:intergenic 40.0%
ATGTAATGCAGACTCAGTTG+TGG - chr1_2:5004427-5004446 Msa0050970:intron 40.0%
CACCCAAGCAATTTAGATAG+CGG + chr1_2:5004517-5004536 None:intergenic 40.0%
TAAATTGCTTGGGTGCATTC+TGG - chr1_2:5004522-5004541 Msa0050970:intron 40.0%
CCTCATAATCAGAGATTGGT+AGG + chr1_2:5004580-5004599 None:intergenic 40.0%
CCTACCAATCTCTGATTATG+AGG - chr1_2:5004577-5004596 Msa0050970:intron 40.0%
TGCACCTCATAATCAGAGAT+TGG + chr1_2:5004584-5004603 None:intergenic 40.0%
CGTGGAAAACTACAAAAGCA+AGG + chr1_2:5004704-5004723 None:intergenic 40.0%
! CTTTTGTAGTTTTCCACGTC+TGG - chr1_2:5004706-5004725 Msa0050970:intron 40.0%
TGCTTGCAGACATCACATTT+CGG + chr1_2:5004775-5004794 None:intergenic 40.0%
GGCAAACGAAAGTCTATGAT+AGG + chr1_2:5004847-5004866 None:intergenic 40.0%
GTAAAAATGGATGGGGAGAA+TGG - chr1_2:5004882-5004901 Msa0050970:intron 40.0%
! GTAGATTGTTTTCCTGTTCC+TGG - chr1_2:5004995-5005014 Msa0050970:intron 40.0%
GAGATATATGTCTGCAGTCA+AGG + chr1_2:5005244-5005263 None:intergenic 40.0%
GACTGCAGACATATATCTCA+TGG - chr1_2:5005245-5005264 Msa0050970:intron 40.0%
!! CAATAATGCTGGTTCCAGAA+TGG + chr1_2:5005355-5005374 None:intergenic 40.0%
GGATATATTGCCCATAAGGA+TGG - chr1_2:5005558-5005577 Msa0050970:intron 40.0%
ATATTGCCCATAAGGATGGA+AGG - chr1_2:5005562-5005581 Msa0050970:intron 40.0%
! TCAGCAAGTTCCTCTACTTT+TGG - chr1_2:5005692-5005711 Msa0050970:intron 40.0%
TTAGGACAGGAGAACATAAC+AGG + chr1_2:5006197-5006216 None:intergenic 40.0%
TATGATAAGATCCAACGGTC+AGG - chr1_2:5006275-5006294 Msa0050970:intron 40.0%
TCATTCTATACGGTCTTCCA+AGG - chr1_2:5006517-5006536 Msa0050970:intron 40.0%
!!! CAGAAGCACTGTGTTTTACA+TGG - chr1_2:5006639-5006658 Msa0050970:intron 40.0%
TTCACAAAAGCTAAACCCCA+TGG + chr1_2:5006749-5006768 None:intergenic 40.0%
AGAACGCAAAGGTTCTATCA+TGG + chr1_2:5006777-5006796 None:intergenic 40.0%
CTAACTGCAAAAGAACGCAA+AGG + chr1_2:5006788-5006807 None:intergenic 40.0%
! CTTTGCGTTCTTTTGCAGTT+AGG - chr1_2:5006786-5006805 Msa0050970:CDS 40.0%
! CGTTCTTTTGCAGTTAGGAA+AGG - chr1_2:5006791-5006810 Msa0050970:CDS 40.0%
AAGATGCTGATGCGATAAGA+GGG + chr1_2:5006990-5007009 None:intergenic 40.0%
AAAGATGCTGATGCGATAAG+AGG + chr1_2:5006991-5007010 None:intergenic 40.0%
! AAATTGATTCTCCCAAGGGA+TGG + chr1_2:5007022-5007041 None:intergenic 40.0%
! GCACAAATTGATTCTCCCAA+GGG + chr1_2:5007026-5007045 None:intergenic 40.0%
! TGCACAAATTGATTCTCCCA+AGG + chr1_2:5007027-5007046 None:intergenic 40.0%
! AGTTCCAGCGTACATTTTCT+TGG - chr1_2:5007183-5007202 Msa0050970:intron 40.0%
GTAACCAAGAAAATGTACGC+TGG + chr1_2:5007190-5007209 None:intergenic 40.0%
ATATGATGCAGATGAGGATG+AGG + chr1_2:5007435-5007454 None:intergenic 40.0%
!! CTCCTTTTGAGAAGAAGCTT+GGG - chr1_2:5007477-5007496 Msa0050970:five_prime_UTR 40.0%
!! TCCTTTTGAGAAGAAGCTTG+GGG - chr1_2:5007478-5007497 Msa0050970:five_prime_UTR 40.0%
GGGAAATGTCTGATTCAATC+TGG + chr1_2:5007517-5007536 None:intergenic 40.0%
TCAGACATTTCCCCTGTTTA+TGG - chr1_2:5007524-5007543 Msa0050970:five_prime_UTR 40.0%
ATTTCCCCTGTTTATGGAGA+TGG - chr1_2:5007530-5007549 Msa0050970:five_prime_UTR 40.0%
TTTCCCCTGTTTATGGAGAT+GGG - chr1_2:5007531-5007550 Msa0050970:five_prime_UTR 40.0%
AAACCCATCTCCATAAACAG+GGG + chr1_2:5007537-5007556 None:intergenic 40.0%
CTAAACCCATCTCCATAAAC+AGG + chr1_2:5007539-5007558 None:intergenic 40.0%
CAAAAAGCAGTTCGCAAGTA+TGG - chr1_2:5007566-5007585 Msa0050970:five_prime_UTR 40.0%
GTTTCTAATCACAACAGGCT+AGG + chr1_2:5007695-5007714 None:intergenic 40.0%
CTTCTTCCTCCTTCTTACGA+AGG + chr1_2:5000847-5000866 None:intergenic 45.0%
CTTCGTAAGAAGGAGGAAGA+AGG - chr1_2:5000845-5000864 Msa0050970:three_prime_UTR 45.0%
GTGTGTGTTGTGTGTGAACA+AGG - chr1_2:5000867-5000886 Msa0050970:three_prime_UTR 45.0%
TGTGTTGTGTGTGAACAAGG+AGG - chr1_2:5000870-5000889 Msa0050970:three_prime_UTR 45.0%
GTTAGGACTAGGAGGAGATT+TGG + chr1_2:5000927-5000946 None:intergenic 45.0%
AATCTCCTCCTAGTCCTAAC+TGG - chr1_2:5000927-5000946 Msa0050970:three_prime_UTR 45.0%
ACAAGTACCCCTGAAGTTGA+TGG + chr1_2:5001689-5001708 None:intergenic 45.0%
! CTGGTGTTGGAAAATGTTGC+AGG - chr1_2:5001742-5001761 Msa0050970:intron 45.0%
! TCGTGCTATTGCGTTGTCTT+TGG - chr1_2:5001853-5001872 Msa0050970:intron 45.0%
CCCATCGGGAAATACTGAAT+TGG + chr1_2:5002653-5002672 None:intergenic 45.0%
AACTCATACCTGTACCCCAT+CGG + chr1_2:5002668-5002687 None:intergenic 45.0%
CAATTCCCACTTATTCGTGC+TGG - chr1_2:5002709-5002728 Msa0050970:intron 45.0%
CAAGACCAGCACGAATAAGT+GGG + chr1_2:5002717-5002736 None:intergenic 45.0%
ACAAGACCAGCACGAATAAG+TGG + chr1_2:5002718-5002737 None:intergenic 45.0%
TGACAAAAGATAGGGGGGAA+AGG + chr1_2:5002896-5002915 None:intergenic 45.0%
CAGAAAGGGGGAAAAAGATG+GGG + chr1_2:5003928-5003947 None:intergenic 45.0%
CCAGAAAGGGGGAAAAAGAT+GGG + chr1_2:5003927-5003946 None:intergenic 45.0%
ACCAGAAAGGGGGAAAAAGA+TGG + chr1_2:5003926-5003945 None:intergenic 45.0%
!! TTTCCCCCTTTCTGGTTTGA+AGG - chr1_2:5002970-5002989 Msa0050970:CDS 45.0%
AAAGGGAGCTAGCACAGTAA+TGG - chr1_2:5003108-5003127 Msa0050970:intron 45.0%
! TTTGAAACCTGCAATGGAGG+TGG + chr1_2:5003176-5003195 None:intergenic 45.0%
CTACGATTGCGAGGAAAATG+AGG + chr1_2:5003213-5003232 None:intergenic 45.0%
TGATTGTGACTACGATTGCG+AGG + chr1_2:5003222-5003241 None:intergenic 45.0%
AGAAACGAGTGGAATTGTGC+TGG + chr1_2:5003341-5003360 None:intergenic 45.0%
ACGATCTCCTTAGAAACGAG+TGG + chr1_2:5003352-5003371 None:intergenic 45.0%
! ACTCGTTTCTAAGGAGATCG+TGG - chr1_2:5003351-5003370 Msa0050970:intron 45.0%
CACTTGATTCTTCATCCTCG+AGG + chr1_2:5003413-5003432 None:intergenic 45.0%
CTCGAGGATGAAGAATCAAG+TGG - chr1_2:5003411-5003430 Msa0050970:intron 45.0%
CGAAGAGAGTAGTAGTGTGT+CGG - chr1_2:5003444-5003463 Msa0050970:intron 45.0%
! TGACAGATGGATTTGCGGAA+GGG - chr1_2:5003536-5003555 Msa0050970:intron 45.0%
TTTGCGGAAGGGAACATGAT+AGG - chr1_2:5003547-5003566 Msa0050970:intron 45.0%
GAAGGGAACATGATAGGAGA+AGG - chr1_2:5003553-5003572 Msa0050970:intron 45.0%
ACCAGAAAGGGGGAAAAAGA+TGG - chr1_2:5003926-5003945 Msa0050970:intron 45.0%
CCAGAAAGGGGGAAAAAGAT+GGG - chr1_2:5003927-5003946 Msa0050970:intron 45.0%
CAGAAAGGGGGAAAAAGATG+GGG - chr1_2:5003928-5003947 Msa0050970:intron 45.0%
ATTGACAAAAGATTGGGGGG+GGG - chr1_2:5003994-5004013 Msa0050970:intron 45.0%
! TTGCCAAGTCAGAAAGTGTG+GGG - chr1_2:5004162-5004181 Msa0050970:intron 45.0%
TAACCCCACACTTTCTGACT+TGG + chr1_2:5004168-5004187 None:intergenic 45.0%
TGGCCGCTATCTAAATTGCT+TGG - chr1_2:5004511-5004530 Msa0050970:intron 45.0%
GGCCGCTATCTAAATTGCTT+GGG - chr1_2:5004512-5004531 Msa0050970:intron 45.0%
AGATTGGTAGGTTGCAAGCA+CGG + chr1_2:5004568-5004587 None:intergenic 45.0%
GAAAGGGTAATTTCCAGACG+TGG + chr1_2:5004722-5004741 None:intergenic 45.0%
TGCAGACATCACATTTCGGA+TGG + chr1_2:5004771-5004790 None:intergenic 45.0%
ACTCCCATAAGACCGTAATC+TGG + chr1_2:5004918-5004937 None:intergenic 45.0%
! TTGTTTTCCTGTTCCTGGTC+CGG - chr1_2:5005000-5005019 Msa0050970:intron 45.0%
AATTATTCCGGACCAGGAAC+AGG + chr1_2:5005010-5005029 None:intergenic 45.0%
TGTTCCTGGTCCGGAATAAT+TGG - chr1_2:5005009-5005028 Msa0050970:intron 45.0%
! GGCCTGTTGCCGTTAATTTT+TGG - chr1_2:5005266-5005285 Msa0050970:intron 45.0%
ATAAGACCAGCAGGGTTTGT+TGG + chr1_2:5005316-5005335 None:intergenic 45.0%
AATATAGGGCACACCCATTC+TGG - chr1_2:5005338-5005357 Msa0050970:intron 45.0%
CATGTGAAGGGCAATAATGC+TGG + chr1_2:5005366-5005385 None:intergenic 45.0%
TCTCTTTACATGCAGCCACA+AGG - chr1_2:5005531-5005550 Msa0050970:intron 45.0%
CTCTTTACATGCAGCCACAA+GGG - chr1_2:5005532-5005551 Msa0050970:intron 45.0%
GACGGGATATATTGCCCATA+AGG - chr1_2:5005554-5005573 Msa0050970:intron 45.0%
GAGCTTCCTTCCATCCTTAT+GGG + chr1_2:5005571-5005590 None:intergenic 45.0%
AGAGCTTCCTTCCATCCTTA+TGG + chr1_2:5005572-5005591 None:intergenic 45.0%
GTGTCTCGATTCTGCTATCA+TGG - chr1_2:5005599-5005618 Msa0050970:intron 45.0%
!! ACAAGCACTGAATGAAGCGA+GGG - chr1_2:5005722-5005741 Msa0050970:intron 45.0%
TGGTCTCAGGCATATGATAG+TGG + chr1_2:5006133-5006152 None:intergenic 45.0%
TATCATATGCCTGAGACCAG+AGG - chr1_2:5006134-5006153 Msa0050970:intron 45.0%
GAAGAGTTAATCCTGACCGT+TGG + chr1_2:5006289-5006308 None:intergenic 45.0%
TCTAACAGTCTGCAACTAGG+AGG + chr1_2:5006596-5006615 None:intergenic 45.0%
TAAACCCCATGGATATCACG+GGG + chr1_2:5006738-5006757 None:intergenic 45.0%
CTAAACCCCATGGATATCAC+GGG + chr1_2:5006739-5006758 None:intergenic 45.0%
GCTAAACCCCATGGATATCA+CGG + chr1_2:5006740-5006759 None:intergenic 45.0%
TCAAAACCGCAACACATGCT+TGG + chr1_2:5006852-5006871 None:intergenic 45.0%
TTTGTTTCCGTCCATCCCTT+GGG - chr1_2:5007008-5007027 Msa0050970:CDS 45.0%
CTCATGAGCTAGAATCGATC+CGG + chr1_2:5007082-5007101 None:intergenic 45.0%
CTCATGAGATGATGCATGCA+TGG - chr1_2:5007094-5007113 Msa0050970:intron 45.0%
CCAAGCTTCTTCTCAAAAGG+AGG + chr1_2:5007479-5007498 None:intergenic 45.0%
!! CCTCCTTTTGAGAAGAAGCT+TGG - chr1_2:5007476-5007495 Msa0050970:five_prime_UTR 45.0%
TCCCCAAGCTTCTTCTCAAA+AGG + chr1_2:5007482-5007501 None:intergenic 45.0%
! TATGGAGATGGGTTTAGAGC+CGG - chr1_2:5007542-5007561 Msa0050970:five_prime_UTR 45.0%
!!! CTTGCGAACTGCTTTTTGAC+CGG + chr1_2:5007564-5007583 None:intergenic 45.0%
TTCGCAAGTATGGCCTAGAA+AGG - chr1_2:5007576-5007595 Msa0050970:five_prime_UTR 45.0%
TATGGTGAAGGGTCCTTTCT+AGG + chr1_2:5007592-5007611 None:intergenic 45.0%
AAGGACCCTTCACCATATCA+AGG - chr1_2:5007595-5007614 Msa0050970:five_prime_UTR 45.0%
CGTCACCTTGATATGGTGAA+GGG + chr1_2:5007603-5007622 None:intergenic 45.0%
CCTTCACCATATCAAGGTGA+CGG - chr1_2:5007601-5007620 Msa0050970:five_prime_UTR 45.0%
CTTCACCATATCAAGGTGAC+GGG - chr1_2:5007602-5007621 Msa0050970:five_prime_UTR 45.0%
AACTACCCGTCACCTTGATA+TGG + chr1_2:5007610-5007629 None:intergenic 45.0%
CCTCCGTTTCTAATCACAAC+AGG + chr1_2:5007700-5007719 None:intergenic 45.0%
CCTGTTGTGATTAGAAACGG+AGG - chr1_2:5007697-5007716 Msa0050970:five_prime_UTR 45.0%
TGTGATTAGAAACGGAGGCT+TGG - chr1_2:5007702-5007721 Msa0050970:five_prime_UTR 45.0%
GTGATTAGAAACGGAGGCTT+GGG - chr1_2:5007703-5007722 Msa0050970:five_prime_UTR 45.0%
!!! ACAAAAATATATTAATTTTA+GGG + chr1_2:5002397-5002416 None:intergenic 5.0%
!!! AACAAAAATATATTAATTTT+AGG + chr1_2:5002398-5002417 None:intergenic 5.0%
! AAGGAAAGGGGTGTGTGTGT+GGG + chr1_2:5000898-5000917 None:intergenic 50.0%
! AAAGGAAAGGGGTGTGTGTG+TGG + chr1_2:5000899-5000918 None:intergenic 50.0%
ACAGACACTGACACGTACAC+CGG + chr1_2:5001461-5001480 None:intergenic 50.0%
TTGGAGTCACCTCCCAAACA+TGG - chr1_2:5002608-5002627 Msa0050970:intron 50.0%
AGTATTTCCCGATGGGGTAC+AGG - chr1_2:5002657-5002676 Msa0050970:intron 50.0%
ACTCATACCTGTACCCCATC+GGG + chr1_2:5002667-5002686 None:intergenic 50.0%
GGGGTACAGGTATGAGTTAG+AGG - chr1_2:5002670-5002689 Msa0050970:intron 50.0%
! CCCATCTTTTTCCCCCTTTC+TGG - chr1_2:5002962-5002981 Msa0050970:CDS 50.0%
GCAATGGAGGTGGTTAGCAA+CGG + chr1_2:5003166-5003185 None:intergenic 50.0%
TTGCTAACCACCTCCATTGC+AGG - chr1_2:5003166-5003185 Msa0050970:intron 50.0%
! CGTTTCTAAGGAGATCGTGG+AGG - chr1_2:5003354-5003373 Msa0050970:intron 50.0%
TTGACGGTGATGAATCCTCG+AGG - chr1_2:5003395-5003414 Msa0050970:intron 50.0%
AGAGAGTAGTAGTGTGTCGG+TGG - chr1_2:5003447-5003466 Msa0050970:intron 50.0%
GGGTCGGTGGTATAGTTTGA+AGG - chr1_2:5003501-5003520 Msa0050970:intron 50.0%
! GTGACAGATGGATTTGCGGA+AGG - chr1_2:5003535-5003554 Msa0050970:intron 50.0%
GGGAACATGATAGGAGAAGG+AGG - chr1_2:5003556-5003575 Msa0050970:intron 50.0%
TGATGCAAAGGACAGGACCA+AGG + chr1_2:5003751-5003770 None:intergenic 50.0%
TGGTCCTGTCCTTTGCATCA+TGG - chr1_2:5003751-5003770 Msa0050970:intron 50.0%
TCCTGTCCTTTGCATCATGG+CGG - chr1_2:5003754-5003773 Msa0050970:intron 50.0%
TGGGGGTCTTCAAACCAGAA+AGG - chr1_2:5003913-5003932 Msa0050970:intron 50.0%
GGGGGTCTTCAAACCAGAAA+GGG - chr1_2:5003914-5003933 Msa0050970:intron 50.0%
GGGGTCTTCAAACCAGAAAG+GGG - chr1_2:5003915-5003934 Msa0050970:intron 50.0%
GGGTCTTCAAACCAGAAAGG+GGG - chr1_2:5003916-5003935 Msa0050970:intron 50.0%
! CCCATCTTTTTCCCCCTTTC+TGG + chr1_2:5002962-5002981 None:intergenic 50.0%
TTGACAAAAGATTGGGGGGG+GGG - chr1_2:5003995-5004014 Msa0050970:intron 50.0%
GCTGGCTGCAATACTGAGAT+TGG - chr1_2:5004485-5004504 Msa0050970:intron 50.0%
CACACCAATTATTCCGGACC+AGG + chr1_2:5005016-5005035 None:intergenic 50.0%
GGTCCGGAATAATTGGTGTG+CGG - chr1_2:5005016-5005035 Msa0050970:intron 50.0%
GTCCGGAATAATTGGTGTGC+GGG - chr1_2:5005017-5005036 Msa0050970:intron 50.0%
CACCCGCACACCAATTATTC+CGG + chr1_2:5005022-5005041 None:intergenic 50.0%
ACCTGCAATTGGAGGGAGAA+TGG - chr1_2:5005135-5005154 Msa0050970:intron 50.0%
CCTGCAATTGGAGGGAGAAT+GGG - chr1_2:5005136-5005155 Msa0050970:intron 50.0%
CAGATTCCAACAAACCCTGC+TGG - chr1_2:5005307-5005326 Msa0050970:intron 50.0%
TTCGCTCACAGCTACAACAG+CGG + chr1_2:5005405-5005424 None:intergenic 50.0%
CTGTTGTAGCTGTGAGCGAA+TGG - chr1_2:5005405-5005424 Msa0050970:intron 50.0%
TTGTAGCTGTGAGCGAATGG+AGG - chr1_2:5005408-5005427 Msa0050970:intron 50.0%
TTACATGCAGCCACAAGGGA+CGG - chr1_2:5005536-5005555 Msa0050970:intron 50.0%
GCAATATATCCCGTCCCTTG+TGG + chr1_2:5005549-5005568 None:intergenic 50.0%
!! GACAAGCACTGAATGAAGCG+AGG - chr1_2:5005721-5005740 Msa0050970:intron 50.0%
CTATTTCCTGTGCCGAGTCT+AGG + chr1_2:5006441-5006460 None:intergenic 50.0%
GGGTCTAACAGTCTGCAACT+AGG + chr1_2:5006599-5006618 None:intergenic 50.0%
AAACCCCATGGATATCACGG+GGG + chr1_2:5006737-5006756 None:intergenic 50.0%
CTACTGCCAAGCATGTGTTG+CGG - chr1_2:5006843-5006862 Msa0050970:intron 50.0%
! CTTTGTTTCCGTCCATCCCT+TGG - chr1_2:5007007-5007026 Msa0050970:CDS 50.0%
TGATTCTCCCAAGGGATGGA+CGG + chr1_2:5007018-5007037 None:intergenic 50.0%
AGATGATGCATGCATGGCTG+CGG - chr1_2:5007100-5007119 Msa0050970:intron 50.0%
!!! GTCAGGTTTTGGCTCACATG+TGG - chr1_2:5007363-5007382 Msa0050970:five_prime_UTR 50.0%
!!! GGTTTTGGCTCACATGTGGT+TGG - chr1_2:5007367-5007386 Msa0050970:five_prime_UTR 50.0%
TCTGAGCTTTCTTCTGCACC+AGG - chr1_2:5007392-5007411 Msa0050970:five_prime_UTR 50.0%
GCTGATGAAAAGTTGCTGCC+TGG + chr1_2:5007413-5007432 None:intergenic 50.0%
CCGTCACCTTGATATGGTGA+AGG + chr1_2:5007604-5007623 None:intergenic 50.0%
AAACGGAGGCTTGGGTACTT+TGG - chr1_2:5007711-5007730 Msa0050970:five_prime_UTR 50.0%
TGGGGTCTCCCTTCGTAAGA+AGG - chr1_2:5000835-5000854 Msa0050970:three_prime_UTR 55.0%
GGTCTCCCTTCGTAAGAAGG+AGG - chr1_2:5000838-5000857 Msa0050970:three_prime_UTR 55.0%
! AGGAAAGGGGTGTGTGTGTG+GGG + chr1_2:5000897-5000916 None:intergenic 55.0%
TGAACATCTTGTCGCGGCAC+TGG - chr1_2:5001392-5001411 Msa0050970:intron 55.0%
GGTGTACGTGTCAGTGTCTG+TGG - chr1_2:5001460-5001479 Msa0050970:intron 55.0%
GGGGCTGATGTGATGTACAC+TGG - chr1_2:5002793-5002812 Msa0050970:intron 55.0%
GGGCCTTCAAACCAGAAAGG+GGG + chr1_2:5002976-5002995 None:intergenic 55.0%
GGGGCCTTCAAACCAGAAAG+GGG + chr1_2:5002977-5002996 None:intergenic 55.0%
GGGGGCCTTCAAACCAGAAA+GGG + chr1_2:5002978-5002997 None:intergenic 55.0%
TGGGGGCCTTCAAACCAGAA+AGG + chr1_2:5002979-5002998 None:intergenic 55.0%
TCACCGTTCTCTGCATTCGC+CGG - chr1_2:5003269-5003288 Msa0050970:CDS 55.0%
GTTCCGGCGAATGCAGAGAA+CGG + chr1_2:5003275-5003294 None:intergenic 55.0%
ACCAAGGAAGCTGCAGAGAG+GGG + chr1_2:5003735-5003754 None:intergenic 55.0%
GACCAAGGAAGCTGCAGAGA+GGG + chr1_2:5003736-5003755 None:intergenic 55.0%
TCCGCCATGATGCAAAGGAC+AGG + chr1_2:5003758-5003777 None:intergenic 55.0%
ACAGCTCCGCCATGATGCAA+AGG + chr1_2:5003763-5003782 None:intergenic 55.0%
TGACAAAAGATTGGGGGGGG+GGG - chr1_2:5003996-5004015 Msa0050970:intron 55.0%
GTAGGTTGCAAGCACGGCAA+CGG + chr1_2:5004562-5004581 None:intergenic 55.0%
CCCATTCTCCCTCCAATTGC+AGG + chr1_2:5005139-5005158 None:intergenic 55.0%
TCGCTCACAGCTACAACAGC+GGG + chr1_2:5005404-5005423 None:intergenic 55.0%
TACATGCAGCCACAAGGGAC+GGG - chr1_2:5005537-5005556 Msa0050970:intron 55.0%
! AGCACTGAATGAAGCGAGGG+AGG - chr1_2:5005725-5005744 Msa0050970:intron 55.0%
GCACTGAATGAAGCGAGGGA+GGG - chr1_2:5005726-5005745 Msa0050970:intron 55.0%
CACTGAATGAAGCGAGGGAG+GGG - chr1_2:5005727-5005746 Msa0050970:intron 55.0%
ACTGAATGAAGCGAGGGAGG+GGG - chr1_2:5005728-5005747 Msa0050970:intron 55.0%
! CAGTGCTGAGTTCCTCTGAG+AGG + chr1_2:5006166-5006185 None:intergenic 55.0%
AGAAGACCTAGACTCGGCAC+AGG - chr1_2:5006432-5006451 Msa0050970:intron 55.0%
CAGCGCGCAGTCAGTTTGTA+TGG + chr1_2:5006480-5006499 None:intergenic 55.0%
TGCTTCCCCCGTGATATCCA+TGG - chr1_2:5006729-5006748 Msa0050970:CDS 55.0%
GCTTCCCCCGTGATATCCAT+GGG - chr1_2:5006730-5006749 Msa0050970:CDS 55.0%
CTTCCCCCGTGATATCCATG+GGG - chr1_2:5006731-5006750 Msa0050970:CDS 55.0%
GACACTGACACGTACACCGG+TGG + chr1_2:5001458-5001477 None:intergenic 60.0%
GCACCTTCCGCCAATTCCTC+CGG - chr1_2:5003130-5003149 Msa0050970:intron 60.0%
AACACCGCCGGAGGAATTGG+CGG + chr1_2:5003140-5003159 None:intergenic 60.0%
CACAACACCGCCGGAGGAAT+TGG + chr1_2:5003143-5003162 None:intergenic 60.0%
TAGCAACGGCACAACACCGC+CGG + chr1_2:5003152-5003171 None:intergenic 60.0%
TCCCCTCTCTGCAGCTTCCT+TGG - chr1_2:5003731-5003750 Msa0050970:intron 60.0%
GGACCAAGGAAGCTGCAGAG+AGG + chr1_2:5003737-5003756 None:intergenic 60.0%
GACAAAAGATTGGGGGGGGG+GGG - chr1_2:5003997-5004016 Msa0050970:intron 60.0%
ACAAAAGATTGGGGGGGGGG+GGG - chr1_2:5003998-5004017 Msa0050970:intron 60.0%
TACGTGTGCGTGCGTGTGTG+TGG - chr1_2:5004126-5004145 Msa0050970:CDS 60.0%
!! GCACGGCAACGGAAGCATTC+AGG + chr1_2:5004551-5004570 None:intergenic 60.0%
AGGCAGAGTCCTCTGGTCTC+AGG + chr1_2:5006146-5006165 None:intergenic 60.0%
! CTCTGAGAGGCAGAGTCCTC+TGG + chr1_2:5006153-5006172 None:intergenic 60.0%
CAGAGGACTCTGCCTCTCAG+AGG - chr1_2:5006151-5006170 Msa0050970:intron 60.0%
CATGCATGGCTGCGGCTAAC+AGG - chr1_2:5007108-5007127 Msa0050970:intron 60.0%
CCTTCCGCCAATTCCTCCGG+CGG - chr1_2:5003133-5003152 Msa0050970:intron 65.0%
CACCCTATGTTCGCCGACGG+CGG + chr1_2:5003481-5003500 None:intergenic 65.0%
GCCGTCGGCGAACATAGGGT+GGG - chr1_2:5003480-5003499 Msa0050970:intron 65.0%
CCCCACCCTATGTTCGCCGA+CGG + chr1_2:5003484-5003503 None:intergenic 65.0%
CCGTCGGCGAACATAGGGTG+GGG - chr1_2:5003481-5003500 Msa0050970:intron 65.0%
CGGCGAACATAGGGTGGGGT+CGG - chr1_2:5003485-5003504 Msa0050970:intron 65.0%
CGAACATAGGGTGGGGTCGG+TGG - chr1_2:5003488-5003507 Msa0050970:intron 65.0%
CAAAAGATTGGGGGGGGGGG+GGG - chr1_2:5003999-5004018 Msa0050970:intron 65.0%
AAAAGATTGGGGGGGGGGGG+GGG - chr1_2:5004000-5004019 Msa0050970:intron 65.0%
CCGCCGGAGGAATTGGCGGA+AGG + chr1_2:5003136-5003155 None:intergenic 70.0%
CAACGGCACAACACCGCCGG+AGG + chr1_2:5003149-5003168 None:intergenic 70.0%
CCTATGTTCGCCGACGGCGG+CGG + chr1_2:5003478-5003497 None:intergenic 70.0%
CGCCGCCGTCGGCGAACATA+GGG - chr1_2:5003476-5003495 Msa0050970:intron 70.0%
CGCCGTCGGCGAACATAGGG+TGG - chr1_2:5003479-5003498 Msa0050970:intron 70.0%
AAAGATTGGGGGGGGGGGGG+GGG - chr1_2:5004001-5004020 Msa0050970:intron 70.0%
GGTGGAGTCACCGCCGCCGT+CGG - chr1_2:5003465-5003484 Msa0050970:intron 75.0%
CCGCCGCCGTCGGCGAACAT+AGG - chr1_2:5003475-5003494 Msa0050970:intron 75.0%
AAGATTGGGGGGGGGGGGGG+GGG - chr1_2:5004002-5004021 Msa0050970:intron 75.0%
! AGATTGGGGGGGGGGGGGGG+GGG - chr1_2:5004003-5004022 Msa0050970:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 5000806 5007830 5000806 ID=Msa0050970;Name=Msa0050970
chr1_2 mRNA 5000806 5007830 5000806 ID=Msa0050970-mRNA-1;Parent=Msa0050970;Name=Msa0050970-mRNA-1;_AED=0.13;_eAED=0.13;_QI=529|0.90|0.91|1|0.72|0.66|12|190|452
chr1_2 exon 5000806 5001312 5000806 ID=Msa0050970-mRNA-1:exon:1438;Parent=Msa0050970-mRNA-1
chr1_2 exon 5001507 5001565 5001507 ID=Msa0050970-mRNA-1:exon:1437;Parent=Msa0050970-mRNA-1
chr1_2 exon 5002098 5002159 5002098 ID=Msa0050970-mRNA-1:exon:1436;Parent=Msa0050970-mRNA-1
chr1_2 exon 5002452 5002508 5002452 ID=Msa0050970-mRNA-1:exon:1435;Parent=Msa0050970-mRNA-1
chr1_2 exon 5002878 5003090 5002878 ID=Msa0050970-mRNA-1:exon:1434;Parent=Msa0050970-mRNA-1
chr1_2 exon 5003207 5003326 5003207 ID=Msa0050970-mRNA-1:exon:1433;Parent=Msa0050970-mRNA-1
chr1_2 exon 5003838 5003921 5003838 ID=Msa0050970-mRNA-1:exon:1432;Parent=Msa0050970-mRNA-1
chr1_2 exon 5004038 5004158 5004038 ID=Msa0050970-mRNA-1:exon:1431;Parent=Msa0050970-mRNA-1
chr1_2 exon 5005958 5006090 5005958 ID=Msa0050970-mRNA-1:exon:1430;Parent=Msa0050970-mRNA-1
chr1_2 exon 5006728 5006818 5006728 ID=Msa0050970-mRNA-1:exon:1429;Parent=Msa0050970-mRNA-1
chr1_2 exon 5006936 5007080 5006936 ID=Msa0050970-mRNA-1:exon:1428;Parent=Msa0050970-mRNA-1
chr1_2 exon 5007345 5007830 5007345 ID=Msa0050970-mRNA-1:exon:1427;Parent=Msa0050970-mRNA-1
chr1_2 five_prime_UTR 5007345 5007830 5007345 ID=Msa0050970-mRNA-1:five_prime_utr;Parent=Msa0050970-mRNA-1
chr1_2 five_prime_UTR 5007038 5007080 5007038 ID=Msa0050970-mRNA-1:five_prime_utr;Parent=Msa0050970-mRNA-1
chr1_2 CDS 5006936 5007037 5006936 ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2 CDS 5006728 5006818 5006728 ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2 CDS 5005958 5006090 5005958 ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2 CDS 5004038 5004158 5004038 ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2 CDS 5003838 5003921 5003838 ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2 CDS 5003207 5003326 5003207 ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2 CDS 5002878 5003090 5002878 ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2 CDS 5002452 5002508 5002452 ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2 CDS 5002098 5002159 5002098 ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2 CDS 5001507 5001565 5001507 ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2 CDS 5000996 5001312 5000996 ID=Msa0050970-mRNA-1:cds;Parent=Msa0050970-mRNA-1
chr1_2 three_prime_UTR 5000806 5000995 5000806 ID=Msa0050970-mRNA-1:three_prime_utr;Parent=Msa0050970-mRNA-1
Gene Sequence

>Msa0050970

ATGGGTTGGCTTAGTAGAATTTTTAAAGGGTCTGATCATAAGGTTTCTGAAGGGCATTATTATAAAGATGATTCGAGTTATTACTTGCCATCAACTTCAGGGGATGATTGGACTGAGAACGAGAATGAAGACATTGATCGTGCTATTGCGTTGTCTTTGGTAGAAGAAAATCAGAAAGTGAAAAATGTAAAAGACCACAAATCACAATTAGAAGAAGATGAACAACTTGCCAGAGCAATAGAAGAAAGTCTAAATTTGGAGTCACCTCCCAAACATGGAAATGATAACATGTATCAACCAATTCAGTATTTCCCGATGGGGTACAGGATATGTGCTGGCTGCAATACTGAGATTGGTTATGGCCGCTATCTAAATTGCTTGGGTGCATTCTGGCATCCTGAATGCTTCCGTTGCCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTTTCCACGTCTGGAAATTACCCTTTCCATAAAGCATGCTATAAGGAAAGCTACCATCCGAAATGTGATGTCTGCAAGCACTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACACCCATTCTGGAACCAGCATTATTGCCCTTCACATGAACATGATAACACTGCCCGCTGTTGTAGCTGTGAGCGAATGGAGCCACAAGGGACGGGATATATTGCCCATAAGGATGGAAGGAAGCTCTGCTTAGAGTGTCTCGATTCTGCTATCATGGATACTAATGAATGTCAGCCCCTTCATGCTGATATACTGAAGTTCTATGAAAGCATAAATATGAAATTGAATCAGCAAGTTCCTCTACTTTTGGTTGAAAGACAAGCACTGAATGAAGCGAGGGAGGGGGAAAAGAATGGCCACTATCATATGCCTGAGACCAGAGGACTCTGCCTCTCAGAGGAACTCAGCACTCCATACAAACTGACTGCGCGCTGTGATGTGACTGCAATTCTCATTCTATACGGTCTTCCAAGATTACTTACCGGATCGATTCTAGCTCATGAGATGATGCATGCATGGCTGCGGCTAACAGGTTTTCGGACTCTAAGTCAAGATGTTGAAGAAGGTATTTGTCAGGTTTTGGCTCACATGTGGTTGGAGTCTGAGCTTTCTTCTGCACCAGGCAGCAACTTTTCATCAGCCTCATCCTCATCTGCATCATATACATCTAAGACAGGTAAAAGACCTCCTTTTGAGAAGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGGTTTAGAGCCGGTCAAAAAGCAGTTCGCAAGTATGGCCTAGAAAGGACCCTTCACCATATCAAGGTGACGGGTAGTTTCCCATATTAA
Protein sequence

>Msa0050970

MGWLSRIFKGSDHKVSEGHYYKDDSSYYLPSTSGDDWTENENEDIDRAIALSLVEENQKVKNVKDHKSQLEEDEQLARAIEESLNLESPPKHGNDNMYQPIQYFPMGYRICAGCNTEIGYGRYLNCLGAFWHPECFRCRACNLPISDYEFSTSGNYPFHKACYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWNQHYCPSHEHDNTARCCSCERMEPQGTGYIAHKDGRKLCLECLDSAIMDTNECQPLHADILKFYESINMKLNQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTPYKLTARCDVTAILILYGLPRLLTGSILAHEMMHAWLRLTGFRTLSQDVEEGICQVLAHMWLESELSSAPGSNFSSASSSSASYTSKTGKRPPFEKKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLERTLHHIKVTGSFPY*