AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0010580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010580 MtrunA17_Chr1g0154501 98.462 260 4 0 1 260 1 260 0.0 548
Msa0010580 MtrunA17_Chr5g0403261 48.060 335 96 4 1 257 1 335 1.10e-105 310
Msa0010580 MtrunA17_Chr8g0373781 52.769 307 95 5 1 257 1 307 5.62e-101 304
Msa0010580 MtrunA17_Chr5g0436051 46.538 260 128 4 1 254 144 398 1.86e-75 240
Msa0010580 MtrunA17_Chr3g0112601 46.296 270 117 8 1 254 31 288 8.22e-74 233
Msa0010580 MtrunA17_Chr5g0403301 72.500 80 22 0 178 257 27 106 6.35e-36 129
Msa0010580 MtrunA17_Chr5g0403291 50.000 104 52 0 106 209 379 482 7.07e-33 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010580 AT1G19270.1 52.978 319 87 6 1 257 1 318 1.19e-108 324
Msa0010580 AT1G19270.2 52.978 319 87 6 1 257 1 318 1.19e-108 324
Msa0010580 AT4G36860.2 61.574 216 78 2 43 257 125 336 1.32e-95 288
Msa0010580 AT4G36860.1 61.574 216 78 2 43 257 125 336 8.20e-95 289
Msa0010580 AT4G36860.3 61.574 216 78 2 43 257 149 360 1.10e-94 290
Msa0010580 AT2G39830.4 46.067 267 121 6 1 254 49 305 1.10e-74 234
Msa0010580 AT2G39830.1 46.067 267 121 6 1 254 49 305 3.43e-74 235
Msa0010580 AT2G39830.2 46.067 267 121 6 1 254 49 305 4.09e-74 235
Msa0010580 AT2G39830.3 46.124 258 125 4 1 254 49 296 2.86e-73 233
Msa0010580 AT5G66620.2 41.038 212 106 6 54 260 222 419 1.37e-47 165
Msa0010580 AT5G66620.1 41.038 212 106 6 54 260 231 428 5.59e-47 166
Msa0010580 AT5G66620.3 41.038 212 106 6 54 260 222 419 6.36e-47 165
Msa0010580 AT5G66620.4 41.038 212 106 6 54 260 222 419 6.36e-47 165
Msa0010580 AT5G66610.1 40.773 233 122 6 35 258 116 341 2.98e-46 162
Msa0010580 AT5G66610.3 41.475 217 112 5 50 258 5 214 3.28e-46 160
Msa0010580 AT5G66610.2 40.773 233 122 6 35 258 116 341 3.44e-46 162
Msa0010580 AT5G17890.1 50.331 151 71 3 111 260 1240 1387 1.93e-41 152
Msa0010580 AT5G66640.1 36.245 229 122 7 39 260 9 220 1.63e-38 140
Msa0010580 AT5G66640.7 36.245 229 122 7 39 260 9 220 1.63e-38 140
Msa0010580 AT5G66640.6 36.245 229 123 7 39 260 40 252 2.86e-38 140
Msa0010580 AT5G66640.5 36.245 229 123 7 39 260 40 252 2.90e-38 140
Msa0010580 AT5G66640.2 36.245 229 122 7 39 260 40 251 3.19e-38 139
Msa0010580 AT5G66640.4 36.245 229 122 7 39 260 40 251 3.27e-38 139
Msa0010580 AT5G66630.1 46.104 154 69 5 110 260 346 488 1.45e-37 140
Msa0010580 AT5G66640.3 52.885 104 48 1 158 260 10 113 4.23e-34 126

Find 160 sgRNAs with CRISPR-Local

Find 504 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCTTATAGCATGCTTTA+TGG 0.147926 1_1:-16035405 None:intergenic
GGAGATATCTATACTTAATA+TGG 0.171031 1_1:-16038296 None:intergenic
TCAGACATTTCCCCTGTTTA+TGG 0.175438 1_1:+16038188 Msa0010580:three_prime_UTR
ATGAGAAACAATGAGATAAA+TGG 0.207370 1_1:-16038318 None:intergenic
TATGGTGAAGGGTCCTTTCT+AGG 0.258048 1_1:-16038253 None:intergenic
GTGAAGTGTGTGATCTAATT+TGG 0.262042 1_1:-16031907 None:intergenic
AGAGCTTCCTTCCATCCTTA+TGG 0.265230 1_1:-16036233 None:intergenic
GTAACAAAATTGAAATAGTT+TGG 0.270323 1_1:-16031937 None:intergenic
CATGTTATCATTTCCATGTT+TGG 0.271952 1_1:-16033320 None:intergenic
TATTACTTGCCATCAACTTC+AGG 0.279065 1_1:+16032376 Msa0010580:CDS
AGAAGGTATTTGTCAGGTTT+TGG 0.289094 1_1:+16038016 Msa0010580:three_prime_UTR
AATATAGGGCACACCCATTC+TGG 0.293148 1_1:+16036002 Msa0010580:CDS
ATGTTATCATTTCCATGTTT+GGG 0.306036 1_1:-16033319 None:intergenic
AATAGAAGAAAGTCTAAATT+TGG 0.307251 1_1:+16033288 Msa0010580:CDS
TAAATTGCTTGGGTGCATTC+TGG 0.307599 1_1:+16035186 Msa0010580:CDS
TCAGCAAGTTCCTCTACTTT+TGG 0.312173 1_1:+16036355 Msa0010580:three_prime_UTR
TTTGTCTTTGTGTTGGGTTT+TGG 0.327489 1_1:+16031515 None:intergenic
CTGCTGGTCTTATTGAATAT+AGG 0.329484 1_1:+16035987 Msa0010580:CDS
TGCTGGTCTTATTGAATATA+GGG 0.342259 1_1:+16035988 Msa0010580:CDS
GTTAGGACTAGGAGGAGATT+TGG 0.343908 1_1:-16031640 None:intergenic
CTAAACCCATCTCCATAAAC+AGG 0.350411 1_1:-16038200 None:intergenic
GCACGGCAACGGAAGCATTC+AGG 0.350540 1_1:-16035212 None:intergenic
CATGCATGGCTGCGGCTAAC+AGG 0.360998 1_1:+16037772 Msa0010580:three_prime_UTR
CTTCTTCTAATTGTGATTTG+TGG 0.366104 1_1:-16033246 None:intergenic
TTTCCATAAAGCATGCTATA+AGG 0.370626 1_1:+16035402 Msa0010580:CDS
TTCTTTCACAGATTACTTAC+CGG 0.370788 1_1:+16037724 Msa0010580:intron
TGAGAAACAATGAGATAAAT+GGG 0.374290 1_1:-16038317 None:intergenic
GAGCTTCCTTCCATCCTTAT+GGG 0.381406 1_1:-16036232 None:intergenic
AACTACCCGTCACCTTGATA+TGG 0.383599 1_1:-16038271 None:intergenic
AATCTCCTCCTAGTCCTAAC+TGG 0.383809 1_1:+16031643 Msa0010580:five_prime_UTR
CTCTGAGAGGCAGAGTCCTC+TGG 0.389800 1_1:-16036813 None:intergenic
AAAATTGAAATAGTTTGGTT+TGG 0.392881 1_1:-16031932 None:intergenic
ACTGCAATTCTCATTCTATA+CGG 0.407169 1_1:+16037171 Msa0010580:three_prime_UTR
CTATTTCCTGTGCCGAGTCT+AGG 0.412169 1_1:-16037102 None:intergenic
GTGATTAGAAACGGAGGCTT+GGG 0.413167 1_1:+16038367 Msa0010580:three_prime_UTR
TGGCCGCTATCTAAATTGCT+TGG 0.419143 1_1:+16035175 Msa0010580:CDS
TAGACTTTCTTCTATTGCTC+TGG 0.423924 1_1:-16033281 None:intergenic
TTATTATTTAAAATCCAGTT+AGG 0.423952 1_1:-16031657 None:intergenic
ATTTCCCCTGTTTATGGAGA+TGG 0.425346 1_1:+16038194 Msa0010580:three_prime_UTR
TCGTGCTATTGCGTTGTCTT+TGG 0.426970 1_1:+16032552 Msa0010580:CDS
TGCACCTCATAATCAGAGAT+TGG 0.431937 1_1:-16035245 None:intergenic
ATAAGACCAGCAGGGTTTGT+TGG 0.433014 1_1:-16035977 None:intergenic
GGCCGCTATCTAAATTGCTT+GGG 0.433359 1_1:+16035176 Msa0010580:CDS
TGCTTGCAGACATCACATTT+CGG 0.436101 1_1:-16035436 None:intergenic
AAACGGAGGCTTGGGTACTT+TGG 0.438070 1_1:+16038375 Msa0010580:three_prime_UTR
ACAAGTACCCCTGAAGTTGA+TGG 0.439731 1_1:-16032385 None:intergenic
CAGCGCGCAGTCAGTTTGTA+TGG 0.443392 1_1:-16037141 None:intergenic
TTTCCCCTGTTTATGGAGAT+GGG 0.444481 1_1:+16038195 Msa0010580:three_prime_UTR
TCCCCAAGCTTCTTCTCAAA+AGG 0.447372 1_1:-16038143 None:intergenic
CCTACCAATCTCTGATTATG+AGG 0.447976 1_1:+16035241 Msa0010580:CDS
AGGCAGAGTCCTCTGGTCTC+AGG 0.449022 1_1:-16036806 None:intergenic
TTCCTCCTTCTTACGAAGGA+AGG 0.456963 1_1:-16031556 None:intergenic
TGTTGAAGAAGGTATTTGTC+AGG 0.458972 1_1:+16038010 Msa0010580:three_prime_UTR
CCCATCGGGAAATACTGAAT+TGG 0.458973 1_1:-16033349 None:intergenic
TGCAATACTGAGATTGGTTA+TGG 0.459883 1_1:+16035155 Msa0010580:CDS
CACTGAATGAAGCGAGGGAG+GGG 0.460388 1_1:+16036390 Msa0010580:three_prime_UTR
ATTACTTGCCATCAACTTCA+GGG 0.464482 1_1:+16032377 Msa0010580:CDS
GTGTCTCGATTCTGCTATCA+TGG 0.464850 1_1:+16036263 Msa0010580:CDS
TATAGCATGCTTTATGGAAA+GGG 0.466425 1_1:-16035399 None:intergenic
AAAGGAAAGGGGTGTGTGTG+TGG 0.468682 1_1:-16031612 None:intergenic
CTTCAGTATATCAGCATGAA+GGG 0.474403 1_1:-16036304 None:intergenic
CCTCCGTTTCTAATCACAAC+AGG 0.479584 1_1:-16038361 None:intergenic
TTTAAAATCCAGTTAGGACT+AGG 0.480746 1_1:-16031651 None:intergenic
AGTATTTCCCGATGGGGTAC+AGG 0.482157 1_1:+16033356 Msa0010580:CDS
AATAATGCTGGTTCCAGAAT+GGG 0.483891 1_1:-16036015 None:intergenic
CAATAATGCTGGTTCCAGAA+TGG 0.490304 1_1:-16036016 None:intergenic
TTATAGCATGCTTTATGGAA+AGG 0.491264 1_1:-16035400 None:intergenic
GACGGGATATATTGCCCATA+AGG 0.491327 1_1:+16036218 Msa0010580:CDS
ACTCATACCTGTACCCCATC+GGG 0.492801 1_1:-16033363 None:intergenic
GGGAAATGTCTGATTCAATC+TGG 0.498038 1_1:-16038178 None:intergenic
GTCTCCCTTCCTTCGTAAGA+AGG 0.503556 1_1:+16031551 Msa0010580:five_prime_UTR
GAGATATCTATACTTAATAT+GGG 0.506138 1_1:-16038295 None:intergenic
TGTGATTAGAAACGGAGGCT+TGG 0.508308 1_1:+16038366 Msa0010580:three_prime_UTR
ACTTCAGTATATCAGCATGA+AGG 0.511784 1_1:-16036305 None:intergenic
CTATATTCAATAAGACCAGC+AGG 0.514177 1_1:-16035986 None:intergenic
TAGCCTGTTGTGATTAGAAA+CGG 0.517936 1_1:+16038358 Msa0010580:three_prime_UTR
AAGGAAAGGGGTGTGTGTGT+GGG 0.519406 1_1:-16031611 None:intergenic
TCTGAGCTTTCTTCTGCACC+AGG 0.519475 1_1:+16038056 Msa0010580:three_prime_UTR
TTACATAATAGGATATGTGC+TGG 0.519801 1_1:+16035131 Msa0010580:intron
AACTCATACCTGTACCCCAT+CGG 0.520543 1_1:-16033364 None:intergenic
CCAATTCAGTATTTCCCGAT+GGG 0.521103 1_1:+16033349 Msa0010580:CDS
GGATATATTGCCCATAAGGA+TGG 0.523228 1_1:+16036222 Msa0010580:CDS
TGGTCTCAGGCATATGATAG+TGG 0.523864 1_1:-16036793 None:intergenic
GATTTGGAATACAAAGGAAA+GGG 0.527838 1_1:-16031624 None:intergenic
CTCATGAGCTAGAATCGATC+CGG 0.532124 1_1:-16037743 None:intergenic
AATGAATAAATGTGAAGAAG+AGG 0.532409 1_1:-16031757 None:intergenic
GCACTGAATGAAGCGAGGGA+GGG 0.533144 1_1:+16036389 Msa0010580:three_prime_UTR
ATGAATAAATGTGAAGAAGA+GGG 0.533394 1_1:-16031756 None:intergenic
GTGTGTGTTGTGTGTGAACA+AGG 0.538655 1_1:+16031583 Msa0010580:five_prime_UTR
CTAAGTCAAGATGTTGAAGA+AGG 0.540521 1_1:+16037999 Msa0010580:three_prime_UTR
CTTCGTAAGAAGGAGGAAGA+AGG 0.540660 1_1:+16031561 Msa0010580:five_prime_UTR
CCTCATAATCAGAGATTGGT+AGG 0.540834 1_1:-16035241 None:intergenic
TTCGCAAGTATGGCCTAGAA+AGG 0.547798 1_1:+16038240 Msa0010580:three_prime_UTR
GCTGGCTGCAATACTGAGAT+TGG 0.548263 1_1:+16035149 Msa0010580:CDS
TCCTCCTTCTTACGAAGGAA+GGG 0.550610 1_1:-16031555 None:intergenic
TACATGCAGCCACAAGGGAC+GGG 0.551584 1_1:+16036201 Msa0010580:intron
TATGGAGATGGGTTTAGAGC+CGG 0.552548 1_1:+16038206 Msa0010580:three_prime_UTR
ACCAATTCAGTATTTCCCGA+TGG 0.560239 1_1:+16033348 Msa0010580:CDS
CTCATGAGATGATGCATGCA+TGG 0.562277 1_1:+16037758 Msa0010580:three_prime_UTR
GCTGATGAAAAGTTGCTGCC+TGG 0.562692 1_1:-16038074 None:intergenic
CTTCTGCAATTTCTTAACAC+AGG 0.562772 1_1:+16031976 Msa0010580:five_prime_UTR
CAGATTCCAACAAACCCTGC+TGG 0.563194 1_1:+16035971 Msa0010580:intron
GCAATATATCCCGTCCCTTG+TGG 0.568174 1_1:-16036210 None:intergenic
CATGTGAAGGGCAATAATGC+TGG 0.569427 1_1:-16036027 None:intergenic
GTAGGTTGCAAGCACGGCAA+CGG 0.571499 1_1:-16035223 None:intergenic
AGGAAAGGGGTGTGTGTGTG+GGG 0.572520 1_1:-16031610 None:intergenic
GTGTTATCATGTTCATGTGA+AGG 0.573567 1_1:-16036040 None:intergenic
TCATTCTATACGGTCTTCCA+AGG 0.573571 1_1:+16037181 Msa0010580:three_prime_UTR
TTACATGCAGCCACAAGGGA+CGG 0.574092 1_1:+16036200 Msa0010580:intron
GCATCATATACATCTAAGAC+AGG 0.574513 1_1:+16038110 Msa0010580:three_prime_UTR
GTTTCTAATCACAACAGGCT+AGG 0.574749 1_1:-16038356 None:intergenic
TCGCTCACAGCTACAACAGC+GGG 0.574792 1_1:-16036065 None:intergenic
TCTGATCATAAGGTTTCTGA+AGG 0.579206 1_1:+16032328 Msa0010580:CDS
AAGGACCCTTCACCATATCA+AGG 0.581020 1_1:+16038259 Msa0010580:three_prime_UTR
CCGTCACCTTGATATGGTGA+AGG 0.582188 1_1:-16038265 None:intergenic
TTGGAGTCACCTCCCAAACA+TGG 0.583689 1_1:+16033307 Msa0010580:CDS
CTGTTGTAGCTGTGAGCGAA+TGG 0.584516 1_1:+16036069 Msa0010580:CDS
TGCAGACATCACATTTCGGA+TGG 0.584761 1_1:-16035432 None:intergenic
TTCGCTCACAGCTACAACAG+CGG 0.587961 1_1:-16036066 None:intergenic
TGTCTTTCAACCAAAAGTAG+AGG 0.588772 1_1:-16036365 None:intergenic
ACTGAATGAAGCGAGGGAGG+GGG 0.590431 1_1:+16036391 Msa0010580:three_prime_UTR
TCTCTTTACATGCAGCCACA+AGG 0.590442 1_1:+16036195 Msa0010580:intron
AGCACTGAATGAAGCGAGGG+AGG 0.591672 1_1:+16036388 Msa0010580:three_prime_UTR
TGTTATCATGTTCATGTGAA+GGG 0.592374 1_1:-16036039 None:intergenic
TTATCATTTCCATGTTTGGG+AGG 0.593608 1_1:-16033316 None:intergenic
CTTCACCATATCAAGGTGAC+GGG 0.594001 1_1:+16038266 Msa0010580:three_prime_UTR
ATATTGCCCATAAGGATGGA+AGG 0.594506 1_1:+16036226 Msa0010580:CDS
CGTCACCTTGATATGGTGAA+GGG 0.595573 1_1:-16038264 None:intergenic
CCAAGCTTCTTCTCAAAAGG+AGG 0.596754 1_1:-16038140 None:intergenic
AGATGATGCATGCATGGCTG+CGG 0.598462 1_1:+16037764 Msa0010580:three_prime_UTR
AGATTTGGAATACAAAGGAA+AGG 0.599680 1_1:-16031625 None:intergenic
TTACTTGCCATCAACTTCAG+GGG 0.600696 1_1:+16032378 Msa0010580:CDS
CCTTCACCATATCAAGGTGA+CGG 0.608624 1_1:+16038265 Msa0010580:three_prime_UTR
AGATTGGTAGGTTGCAAGCA+CGG 0.611730 1_1:-16035229 None:intergenic
AATCAATAATACTTGAGCAA+AGG 0.612114 1_1:-16038448 None:intergenic
CTCTTTACATGCAGCCACAA+GGG 0.615445 1_1:+16036196 Msa0010580:intron
AAAATCCAGTTAGGACTAGG+AGG 0.621731 1_1:-16031648 None:intergenic
GGAGGAGATTTGGAATACAA+AGG 0.628197 1_1:-16031630 None:intergenic
CTTCTTCCTCCTTCTTACGA+AGG 0.628465 1_1:-16031560 None:intergenic
CACCCAAGCAATTTAGATAG+CGG 0.630015 1_1:-16035178 None:intergenic
AGAAGACCTAGACTCGGCAC+AGG 0.630642 1_1:+16037096 Msa0010580:three_prime_UTR
ATATGATGCAGATGAGGATG+AGG 0.632065 1_1:-16038096 None:intergenic
GACAAGCACTGAATGAAGCG+AGG 0.639156 1_1:+16036384 Msa0010580:three_prime_UTR
TCCCTTCCTTCGTAAGAAGG+AGG 0.643021 1_1:+16031554 Msa0010580:five_prime_UTR
ATTTGGAATACAAAGGAAAG+GGG 0.645378 1_1:-16031623 None:intergenic
ACAAGCACTGAATGAAGCGA+GGG 0.649587 1_1:+16036385 Msa0010580:three_prime_UTR
TAAACCCATCTCCATAAACA+GGG 0.651389 1_1:-16038199 None:intergenic
TTCAGTATATCAGCATGAAG+GGG 0.658616 1_1:-16036303 None:intergenic
AGATGTATATGATGCAGATG+AGG 0.664075 1_1:-16038102 None:intergenic
CAATTCAGTATTTCCCGATG+GGG 0.664407 1_1:+16033350 Msa0010580:CDS
TTGTAGCTGTGAGCGAATGG+AGG 0.666039 1_1:+16036072 Msa0010580:CDS
CAGAGGACTCTGCCTCTCAG+AGG 0.667518 1_1:+16036814 Msa0010580:three_prime_UTR
GAAAGGGTAATTTCCAGACG+TGG 0.673323 1_1:-16035383 None:intergenic
CAGTGCTGAGTTCCTCTGAG+AGG 0.678909 1_1:-16036826 None:intergenic
TATCATATGCCTGAGACCAG+AGG 0.682286 1_1:+16036797 Msa0010580:three_prime_UTR
CCTGTTGTGATTAGAAACGG+AGG 0.683136 1_1:+16038361 Msa0010580:three_prime_UTR
TATATTCAATAAGACCAGCA+GGG 0.688376 1_1:-16035985 None:intergenic
CTGATCATAAGGTTTCTGAA+GGG 0.689401 1_1:+16032329 Msa0010580:CDS
AAACCCATCTCCATAAACAG+GGG 0.693477 1_1:-16038198 None:intergenic
TGTGTTGTGTGTGAACAAGG+AGG 0.770683 1_1:+16031586 Msa0010580:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGTTTTTTTTTTACTA+TGG + chr1_1:16033109-16033128 Msa0010580:intron 10.0%
!!! TTTTGTTTTTTTTTTACTAT+GGG + chr1_1:16033110-16033129 Msa0010580:intron 10.0%
!!! AAAAAACAAAAAATTGATTT+TGG + chr1_1:16033776-16033795 Msa0010580:intron 10.0%
!!! AAAAAACAAAAAAATGATTT+TGG - chr1_1:16034478-16034497 None:intergenic 10.0%
!! AATCTAATTATTTACATAAT+AGG + chr1_1:16035120-16035139 Msa0010580:intron 10.0%
!! TATATATTACCAAAAATTAA+CGG - chr1_1:16035942-16035961 None:intergenic 10.0%
!! TAATATAAAAATATTTAAGC+TGG - chr1_1:16036103-16036122 None:intergenic 10.0%
!! AATTAATAATTTGATTGTAA+CGG + chr1_1:16036462-16036481 Msa0010580:intron 10.0%
!! TATATTTATATATGTATGTT+AGG - chr1_1:16036878-16036897 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_1:16034671-16034690 Msa0010580:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_1:16034671-16034690 Msa0010580:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_1:16034671-16034690 Msa0010580:intron 100.0%
!!! TTATTATTTAAAATCCAGTT+AGG - chr1_1:16031660-16031679 None:intergenic 15.0%
!! TTACACAAAAAAAAAAAAGA+GGG - chr1_1:16032065-16032084 None:intergenic 15.0%
!!! ATTAATTTTAGGGTTTATAT+TGG - chr1_1:16033086-16033105 None:intergenic 15.0%
!!! TTGATTTTGGAAATTAAAAA+AGG + chr1_1:16033789-16033808 Msa0010580:intron 15.0%
!!! TGATTTTGGAAATTAAAAAA+GGG + chr1_1:16033790-16033809 Msa0010580:intron 15.0%
!! AAAATAAACAGAAAATTGAT+GGG - chr1_1:16035009-16035028 None:intergenic 15.0%
!!! TTTTACATATCAAAAAGTAA+AGG - chr1_1:16035532-16035551 None:intergenic 15.0%
!!! TACTTTTTGATATGTAAAAA+TGG + chr1_1:16035533-16035552 Msa0010580:intron 15.0%
!! CATTTATTTGATAAATTATG+TGG - chr1_1:16036576-16036595 None:intergenic 15.0%
!! GTTGAACAAAAAATAAAAAA+AGG + chr1_1:16037480-16037499 Msa0010580:intron 15.0%
!! CTATTAAAATGAATAAATGA+TGG - chr1_1:16037887-16037906 None:intergenic 15.0%
!! AAAATTGAAATAGTTTGGTT+TGG - chr1_1:16031935-16031954 None:intergenic 20.0%
!! GTAACAAAATTGAAATAGTT+TGG - chr1_1:16031940-16031959 None:intergenic 20.0%
!! CTTACACAAAAAAAAAAAAG+AGG - chr1_1:16032066-16032085 None:intergenic 20.0%
!!! ATAGCTATTTTTTTGATTGA+TGG + chr1_1:16032279-16032298 Msa0010580:exon 20.0%
!!! TAGCTATTTTTTTGATTGAT+GGG + chr1_1:16032280-16032299 Msa0010580:exon 20.0%
!! TTTCTAAATGATTTCAAACA+TGG - chr1_1:16033052-16033071 None:intergenic 20.0%
!!! GTTTGAAATCATTTAGAAAT+TGG + chr1_1:16033053-16033072 Msa0010580:intron 20.0%
!! AATAGAAGAAAGTCTAAATT+TGG + chr1_1:16033288-16033307 Msa0010580:CDS 20.0%
!! AAAAATTACATTTACACACA+TGG - chr1_1:16033756-16033775 None:intergenic 20.0%
!!! ATTTTGGAAATTAAGAGAAA+AGG - chr1_1:16034462-16034481 None:intergenic 20.0%
!! AATTTATGAACAAATAACCA+TGG + chr1_1:16034888-16034907 Msa0010580:intron 20.0%
!! ATTTATGAACAAATAACCAT+GGG + chr1_1:16034889-16034908 Msa0010580:intron 20.0%
!! GAAAATAAACAGAAAATTGA+TGG - chr1_1:16035010-16035029 None:intergenic 20.0%
!! ATTATTCTATTATTTCAGCT+TGG + chr1_1:16035043-16035062 Msa0010580:intron 20.0%
!! ATTAAAATGAGAAATTTGAC+TGG - chr1_1:16035285-16035304 None:intergenic 20.0%
!!! CATTTTAATGTTTTTGTAAC+TGG + chr1_1:16035296-16035315 Msa0010580:intron 20.0%
!! AGAATGTAAAAAGTTGTTAA+GGG - chr1_1:16035477-16035496 None:intergenic 20.0%
!! AAGAATGTAAAAAGTTGTTA+AGG - chr1_1:16035478-16035497 None:intergenic 20.0%
!!! TTTTGATATGTAAAAATGGA+TGG + chr1_1:16035537-16035556 Msa0010580:intron 20.0%
!! TTTGATATGTAAAAATGGAT+GGG + chr1_1:16035538-16035557 Msa0010580:intron 20.0%
!! AATAAACATCATGAATGAAA+TGG - chr1_1:16035839-16035858 None:intergenic 20.0%
!! TCCATGTTACAATTAAATTA+AGG + chr1_1:16035864-16035883 Msa0010580:intron 20.0%
!! AAATCTAACACTAACAAAAA+TGG - chr1_1:16036524-16036543 None:intergenic 20.0%
!! AGATACAAACAAATCTAATT+TGG + chr1_1:16036640-16036659 Msa0010580:intron 20.0%
!! TATTACTTATTACAAGCATT+AGG - chr1_1:16036669-16036688 None:intergenic 20.0%
!! ATATAAATATATAAGCGACA+TGG + chr1_1:16036887-16036906 Msa0010580:intron 20.0%
!! ATCATTTATGATAAATCCAA+CGG + chr1_1:16036932-16036951 Msa0010580:intron 20.0%
!! AAAACATCAAATTATTACCT+TGG - chr1_1:16037201-16037220 None:intergenic 20.0%
!! ACAAACGTAAAATATTATCT+GGG - chr1_1:16037283-16037302 None:intergenic 20.0%
!! AACCTTCATATATACAAAAT+TGG - chr1_1:16037971-16037990 None:intergenic 20.0%
!!! TTTGTATATATGAAGGTTTT+CGG + chr1_1:16037973-16037992 Msa0010580:intron 20.0%
!! GAGATATCTATACTTAATAT+GGG - chr1_1:16038298-16038317 None:intergenic 20.0%
! ATGAATAAATGTGAAGAAGA+GGG - chr1_1:16031759-16031778 None:intergenic 25.0%
! AATGAATAAATGTGAAGAAG+AGG - chr1_1:16031760-16031779 None:intergenic 25.0%
!!! TCAATTTTTCAAATTACCAC+CGG + chr1_1:16032136-16032155 Msa0010580:intron 25.0%
!!! TATTTTTTTGATTGATGGGT+TGG + chr1_1:16032284-16032303 Msa0010580:exon 25.0%
!! TGGCTTAGTAGAATTTTTAA+AGG + chr1_1:16032304-16032323 Msa0010580:CDS 25.0%
!! GGCTTAGTAGAATTTTTAAA+GGG + chr1_1:16032305-16032324 Msa0010580:CDS 25.0%
! CTTGTTAATGCAATTTGTAA+TGG + chr1_1:16032403-16032422 Msa0010580:intron 25.0%
!!! ATGGTTTAGAATTTTTTGTC+TGG + chr1_1:16032422-16032441 Msa0010580:intron 25.0%
! CAGAAAGTGAAAAATGTAAA+AGG + chr1_1:16032586-16032605 Msa0010580:CDS 25.0%
! AATCACAATTCGATGATAAA+AGG - chr1_1:16032802-16032821 None:intergenic 25.0%
! TTTATCATCGAATTGTGATT+AGG + chr1_1:16032802-16032821 Msa0010580:intron 25.0%
! ATTTCATGCTTGAATGTAAT+AGG + chr1_1:16032892-16032911 Msa0010580:intron 25.0%
! ATGATAACTGATAGTAAATG+TGG + chr1_1:16032915-16032934 Msa0010580:intron 25.0%
! GATATTGTAGCTATCATATA+CGG - chr1_1:16032994-16033013 None:intergenic 25.0%
! ATGTTATCATTTCCATGTTT+GGG - chr1_1:16033322-16033341 None:intergenic 25.0%
!! ATGAATCATCAAGGATATTT+TGG + chr1_1:16033463-16033482 Msa0010580:intron 25.0%
!!! GAATGTAGCTTTAAAAAAAC+TGG + chr1_1:16033519-16033538 Msa0010580:intron 25.0%
! ATCGCTCAATTAAAAACATA+GGG - chr1_1:16033634-16033653 None:intergenic 25.0%
! AATCGCTCAATTAAAAACAT+AGG - chr1_1:16034619-16034638 None:intergenic 25.0%
! AAATCGCTCAATTAAAAACA+TGG + chr1_1:16034618-16034637 Msa0010580:intron 25.0%
! AATCGCTCAATTAAAAACAT+GGG + chr1_1:16034619-16034638 Msa0010580:intron 25.0%
! ATTTGAAGAGGATAAAAAGA+AGG - chr1_1:16034711-16034730 None:intergenic 25.0%
! TTTATGAACAAATAACCATG+GGG + chr1_1:16034890-16034909 Msa0010580:intron 25.0%
! ATTCAATGCTCATAAACAAA+GGG + chr1_1:16034971-16034990 Msa0010580:intron 25.0%
!!! TTCTGTTTATTTTCAGTTGA+TGG + chr1_1:16035016-16035035 Msa0010580:intron 25.0%
! GAATGTAAAAAGTTGTTAAG+GGG - chr1_1:16035476-16035495 None:intergenic 25.0%
! TTGATATGTAAAAATGGATG+GGG + chr1_1:16035539-16035558 Msa0010580:intron 25.0%
! CTAGTATCTAAATTAGCATT+TGG - chr1_1:16035628-16035647 None:intergenic 25.0%
! GCCTTAATTTAATTGTAACA+TGG - chr1_1:16035868-16035887 None:intergenic 25.0%
! TATTAATCATATGCTTGCTT+AGG + chr1_1:16036118-16036137 Msa0010580:intron 25.0%
! ATTAATCATATGCTTGCTTA+GGG + chr1_1:16036119-16036138 Msa0010580:intron 25.0%
!! GTAAGTTGAATGAAAATGTA+TGG + chr1_1:16036141-16036160 Msa0010580:intron 25.0%
!!! CTTGATATTTTAGAGCATTT+TGG - chr1_1:16036701-16036720 None:intergenic 25.0%
! CTTAACTAGTTCACAATTAA+AGG + chr1_1:16036729-16036748 Msa0010580:intron 25.0%
! ATCTTATTCTTTATCTTCAC+AGG + chr1_1:16036769-16036788 Msa0010580:intron 25.0%
! TCTTATTCTTTATCTTCACA+GGG + chr1_1:16036770-16036789 Msa0010580:intron 25.0%
! TTATATATGTATGTTAGGAC+AGG - chr1_1:16036873-16036892 None:intergenic 25.0%
! TGAAAACTGATCAAGTTTAA+AGG - chr1_1:16037076-16037095 None:intergenic 25.0%
! GACAAACGTAAAATATTATC+TGG - chr1_1:16037284-16037303 None:intergenic 25.0%
! ACATAGCTGAATAAAAAAAG+AGG + chr1_1:16037361-16037380 Msa0010580:intron 25.0%
!! CTTTCTCGATTTCTTTTTAT+TGG + chr1_1:16037802-16037821 Msa0010580:intron 25.0%
!!! AATCCCATTTTATTTCATTG+CGG + chr1_1:16037929-16037948 Msa0010580:intron 25.0%
!! TGCCAATTTTGTATATATGA+AGG + chr1_1:16037966-16037985 Msa0010580:intron 25.0%
! GGAGATATCTATACTTAATA+TGG - chr1_1:16038299-16038318 None:intergenic 25.0%
! TGAGAAACAATGAGATAAAT+GGG - chr1_1:16038320-16038339 None:intergenic 25.0%
! ATGAGAAACAATGAGATAAA+TGG - chr1_1:16038321-16038340 None:intergenic 25.0%
! AATCAATAATACTTGAGCAA+AGG - chr1_1:16038451-16038470 None:intergenic 25.0%
! ATTTGGAATACAAAGGAAAG+GGG - chr1_1:16031626-16031645 None:intergenic 30.0%
! GATTTGGAATACAAAGGAAA+GGG - chr1_1:16031627-16031646 None:intergenic 30.0%
! AGATTTGGAATACAAAGGAA+AGG - chr1_1:16031628-16031647 None:intergenic 30.0%
! TTTAAAATCCAGTTAGGACT+AGG - chr1_1:16031654-16031673 None:intergenic 30.0%
AAAAAAAAAGAGGGTTTAGC+AGG - chr1_1:16032056-16032075 None:intergenic 30.0%
ATGTTGATGTTTATTTGTGC+AGG + chr1_1:16032233-16032252 Msa0010580:intron 30.0%
TGTTGATGTTTATTTGTGCA+GGG + chr1_1:16032234-16032253 Msa0010580:intron 30.0%
!! TTTTAAAGGGTCTGATCATA+AGG + chr1_1:16032318-16032337 Msa0010580:CDS 30.0%
!!! TAGAATTTTTTGTCTGGTGT+TGG + chr1_1:16032428-16032447 Msa0010580:intron 30.0%
!!! TTTGATAGGGTTTTGAATGT+AGG + chr1_1:16032495-16032514 Msa0010580:intron 30.0%
GATTATTGCATCTTCTTGAA+AGG + chr1_1:16032629-16032648 Msa0010580:intron 30.0%
CTGAGATTGAAGTTAAGTTA+TGG + chr1_1:16032690-16032709 Msa0010580:intron 30.0%
AAAGGAGAAATGGAAAAAAC+AGG - chr1_1:16032784-16032803 None:intergenic 30.0%
TTCGATGATAAAAGGAGAAA+TGG - chr1_1:16032794-16032813 None:intergenic 30.0%
GAAATTCAATAGTAAGCAAC+TGG - chr1_1:16032877-16032896 None:intergenic 30.0%
GGAATTTCTGCTTATATTGA+TGG + chr1_1:16033131-16033150 Msa0010580:intron 30.0%
CTTCTTCTAATTGTGATTTG+TGG - chr1_1:16033249-16033268 None:intergenic 30.0%
CATGTTATCATTTCCATGTT+TGG - chr1_1:16033323-16033342 None:intergenic 30.0%
GATGATCTTATGAATCATCA+AGG + chr1_1:16033454-16033473 Msa0010580:intron 30.0%
!!! ATCATCAAGGATATTTTGGT+AGG + chr1_1:16033467-16033486 Msa0010580:intron 30.0%
!!! AAGGATATTTTGGTAGGAAA+GGG + chr1_1:16033473-16033492 Msa0010580:intron 30.0%
! ATACACTGTTCGTTCTTTTT+AGG + chr1_1:16033559-16033578 Msa0010580:intron 30.0%
ACATCATCACTAAAACACAT+GGG - chr1_1:16034557-16034576 None:intergenic 30.0%
TCTCAACAATAAGTGAAGAT+TGG + chr1_1:16034337-16034356 Msa0010580:intron 30.0%
ACATCATCACTAAAACACAT+GGG + chr1_1:16034557-16034576 Msa0010580:intron 30.0%
! TTAGTACAAGGTATTTGAAG+AGG - chr1_1:16034723-16034742 None:intergenic 30.0%
GCTGCACAAAAACAAATTTA+CGG + chr1_1:16034763-16034782 Msa0010580:intron 30.0%
CATTCAATGCTCATAAACAA+AGG + chr1_1:16034970-16034989 Msa0010580:intron 30.0%
TTACATAATAGGATATGTGC+TGG + chr1_1:16035131-16035150 Msa0010580:intron 30.0%
! TGGTTTTTATTCTGTACTCA+AGG + chr1_1:16035316-16035335 Msa0010580:intron 30.0%
! TCTGTACTCAAGGTTTTTAT+TGG + chr1_1:16035326-16035345 Msa0010580:intron 30.0%
TATAGCATGCTTTATGGAAA+GGG - chr1_1:16035402-16035421 None:intergenic 30.0%
TTATAGCATGCTTTATGGAA+AGG - chr1_1:16035403-16035422 None:intergenic 30.0%
TTTCCATAAAGCATGCTATA+AGG + chr1_1:16035402-16035421 Msa0010580:CDS 30.0%
TTTCCTTATAGCATGCTTTA+TGG - chr1_1:16035408-16035427 None:intergenic 30.0%
ATCTAAATTAGCATTTGGCA+TGG - chr1_1:16035623-16035642 None:intergenic 30.0%
!!! GCATTTTTTATACCTGCAAT+TGG + chr1_1:16035788-16035807 Msa0010580:intron 30.0%
!!! TTTTTTATACCTGCAATTGG+AGG + chr1_1:16035791-16035810 Msa0010580:intron 30.0%
! TTTTTATACCTGCAATTGGA+GGG + chr1_1:16035792-16035811 Msa0010580:intron 30.0%
TATATTCAATAAGACCAGCA+GGG - chr1_1:16035988-16036007 None:intergenic 30.0%
!! TGCTGGTCTTATTGAATATA+GGG + chr1_1:16035988-16036007 Msa0010580:CDS 30.0%
TGTTATCATGTTCATGTGAA+GGG - chr1_1:16036042-16036061 None:intergenic 30.0%
!!! TTCTGAGGAACTATTTTTTG+TGG + chr1_1:16036495-16036514 Msa0010580:intron 30.0%
GATTTGAAAATGCTATTCTC+TGG + chr1_1:16036539-16036558 Msa0010580:intron 30.0%
!!! TATTTTAGAGCATTTTGGCA+GGG - chr1_1:16036696-16036715 None:intergenic 30.0%
!!! ATATTTTAGAGCATTTTGGC+AGG - chr1_1:16036697-16036716 None:intergenic 30.0%
AGATAAAGAATAAGATACGC+AGG - chr1_1:16036765-16036784 None:intergenic 30.0%
ACTGCAATTCTCATTCTATA+CGG + chr1_1:16037171-16037190 Msa0010580:three_prime_UTR 30.0%
ACCTCACAAAATATCTACAA+CGG - chr1_1:16037619-16037638 None:intergenic 30.0%
TTCTTTCACAGATTACTTAC+CGG + chr1_1:16037724-16037743 Msa0010580:intron 30.0%
!!! TTTGTGTTGGGTTTTGGTTT+TGG + chr1_1:16031521-16031540 Msa0010580:five_prime_UTR 35.0%
!!! TTGGGTTTTGGTTTTGGTTT+TGG + chr1_1:16031527-16031546 Msa0010580:five_prime_UTR 35.0%
!!! TGGGTTTTGGTTTTGGTTTT+GGG + chr1_1:16031528-16031547 Msa0010580:five_prime_UTR 35.0%
GTGAAGTGTGTGATCTAATT+TGG - chr1_1:16031910-16031929 None:intergenic 35.0%
CTTCTGCAATTTCTTAACAC+AGG + chr1_1:16031976-16031995 Msa0010580:five_prime_UTR 35.0%
TCTGATCATAAGGTTTCTGA+AGG + chr1_1:16032328-16032347 Msa0010580:CDS 35.0%
CTGATCATAAGGTTTCTGAA+GGG + chr1_1:16032329-16032348 Msa0010580:CDS 35.0%
TATTACTTGCCATCAACTTC+AGG + chr1_1:16032376-16032395 Msa0010580:CDS 35.0%
ATTACTTGCCATCAACTTCA+GGG + chr1_1:16032377-16032396 Msa0010580:CDS 35.0%
!!! GGTTTTGAATGTAGGATGAT+TGG + chr1_1:16032503-16032522 Msa0010580:intron 35.0%
TGCATCTTCTTGAAAGGATA+TGG + chr1_1:16032635-16032654 Msa0010580:intron 35.0%
! TCTTGAAAGGATATGGATTG+CGG + chr1_1:16032642-16032661 Msa0010580:intron 35.0%
! ATAGTAAGCAACTGGTTTCT+TGG - chr1_1:16032869-16032888 None:intergenic 35.0%
TAGACTTTCTTCTATTGCTC+TGG - chr1_1:16033284-16033303 None:intergenic 35.0%
TTATCATTTCCATGTTTGGG+AGG - chr1_1:16033319-16033338 None:intergenic 35.0%
!!! CAAGGATATTTTGGTAGGAA+AGG + chr1_1:16033472-16033491 Msa0010580:intron 35.0%
ACAATTGACAAAAGATAGGG+GGG - chr1_1:16033600-16033619 None:intergenic 35.0%
CACAATTGACAAAAGATAGG+GGG - chr1_1:16033601-16033620 None:intergenic 35.0%
GCACAATTGACAAAAGATAG+GGG - chr1_1:16033602-16033621 None:intergenic 35.0%
CGCACAATTGACAAAAGATA+GGG - chr1_1:16033603-16033622 None:intergenic 35.0%
TCGCACAATTGACAAAAGAT+AGG - chr1_1:16034650-16034669 None:intergenic 35.0%
ATCATCACTAAAACACATGG+GGG - chr1_1:16034559-16034578 None:intergenic 35.0%
CATCATCACTAAAACACATG+GGG - chr1_1:16034558-16034577 None:intergenic 35.0%
CACATCATCACTAAAACACA+TGG - chr1_1:16034556-16034575 None:intergenic 35.0%
! GTAGAATTTGAAACCTGCAA+TGG - chr1_1:16033881-16033900 None:intergenic 35.0%
ATCAAGATCGAACACATTGA+CGG + chr1_1:16034078-16034097 Msa0010580:intron 35.0%
GTGGTATAGTTTGAAGGAAT+TGG + chr1_1:16034206-16034225 Msa0010580:intron 35.0%
GGATATGGAATTGTATACAG+AGG + chr1_1:16034276-16034295 Msa0010580:intron 35.0%
TACAGAGGAATTCTTCAAGA+TGG + chr1_1:16034291-16034310 Msa0010580:intron 35.0%
CACATCATCACTAAAACACA+TGG + chr1_1:16034556-16034575 Msa0010580:intron 35.0%
CATCATCACTAAAACACATG+GGG + chr1_1:16034558-16034577 Msa0010580:intron 35.0%
ATCATCACTAAAACACATGG+GGG + chr1_1:16034559-16034578 Msa0010580:intron 35.0%
TCGCACAATTGACAAAAGAT+TGG + chr1_1:16034650-16034669 Msa0010580:intron 35.0%
CGCACAATTGACAAAAGATT+GGG + chr1_1:16034651-16034670 Msa0010580:intron 35.0%
GCACAATTGACAAAAGATTG+GGG + chr1_1:16034652-16034671 Msa0010580:intron 35.0%
CACAATTGACAAAAGATTGG+GGG + chr1_1:16034653-16034672 Msa0010580:intron 35.0%
ACAATTGACAAAAGATTGGG+GGG + chr1_1:16034654-16034673 Msa0010580:intron 35.0%
TTTGTGCAGCAGTCTATATT+CGG - chr1_1:16034753-16034772 None:intergenic 35.0%
TAAGTTCCGTATCCAAAGAA+GGG + chr1_1:16034923-16034942 Msa0010580:intron 35.0%
TACAAAAGCTATCCCTTCTT+TGG - chr1_1:16034938-16034957 None:intergenic 35.0%
! TGCAATACTGAGATTGGTTA+TGG + chr1_1:16035155-16035174 Msa0010580:CDS 35.0%
! TGAGAAATTTGACTGGTCAA+AGG - chr1_1:16035278-16035297 None:intergenic 35.0%
GGAAAACGTTATCCAGATTA+CGG + chr1_1:16035567-16035586 Msa0010580:intron 35.0%
TTATCCAGATTACGGTCTTA+TGG + chr1_1:16035575-16035594 Msa0010580:intron 35.0%
! TATCCAGATTACGGTCTTAT+GGG + chr1_1:16035576-16035595 Msa0010580:intron 35.0%
TTGGCATGGTTATACTCATA+AGG - chr1_1:16035609-16035628 None:intergenic 35.0%
! TCTGAACAAGCTTTTATCTC+TGG + chr1_1:16035721-16035740 Msa0010580:intron 35.0%
! CTGAACAAGCTTTTATCTCT+GGG + chr1_1:16035722-16035741 Msa0010580:intron 35.0%
TACCAAAAATTAACGGCAAC+AGG - chr1_1:16035935-16035954 None:intergenic 35.0%
CTATATTCAATAAGACCAGC+AGG - chr1_1:16035989-16036008 None:intergenic 35.0%
!! CTGCTGGTCTTATTGAATAT+AGG + chr1_1:16035987-16036006 Msa0010580:CDS 35.0%
!! AATAATGCTGGTTCCAGAAT+GGG - chr1_1:16036018-16036037 None:intergenic 35.0%
GTGTTATCATGTTCATGTGA+AGG - chr1_1:16036043-16036062 None:intergenic 35.0%
TTCAGTATATCAGCATGAAG+GGG - chr1_1:16036306-16036325 None:intergenic 35.0%
CTTCAGTATATCAGCATGAA+GGG - chr1_1:16036307-16036326 None:intergenic 35.0%
ACTTCAGTATATCAGCATGA+AGG - chr1_1:16036308-16036327 None:intergenic 35.0%
TGTCTTTCAACCAAAAGTAG+AGG - chr1_1:16036368-16036387 None:intergenic 35.0%
!! AACGGCATTAATTTGTTCTG+AGG + chr1_1:16036480-16036499 Msa0010580:intron 35.0%
!!! ATTTTAGAGCATTTTGGCAG+GGG - chr1_1:16036695-16036714 None:intergenic 35.0%
!! TTTTCAAGAAGACCTAGACT+CGG + chr1_1:16037090-16037109 Msa0010580:three_prime_UTR 35.0%
! TCCGTTGTAGATATTTTGTG+AGG + chr1_1:16037615-16037634 Msa0010580:intron 35.0%
CAGCCGCAATGAAATAAAAT+GGG - chr1_1:16037935-16037954 None:intergenic 35.0%
ACAGCCGCAATGAAATAAAA+TGG - chr1_1:16037936-16037955 None:intergenic 35.0%
CTAAGTCAAGATGTTGAAGA+AGG + chr1_1:16037999-16038018 Msa0010580:three_prime_UTR 35.0%
!! TGTTGAAGAAGGTATTTGTC+AGG + chr1_1:16038010-16038029 Msa0010580:three_prime_UTR 35.0%
!!! AGAAGGTATTTGTCAGGTTT+TGG + chr1_1:16038016-16038035 Msa0010580:three_prime_UTR 35.0%
AGATGTATATGATGCAGATG+AGG - chr1_1:16038105-16038124 None:intergenic 35.0%
! GCATCATATACATCTAAGAC+AGG + chr1_1:16038110-16038129 Msa0010580:three_prime_UTR 35.0%
TAAACCCATCTCCATAAACA+GGG - chr1_1:16038202-16038221 None:intergenic 35.0%
TAGCCTGTTGTGATTAGAAA+CGG + chr1_1:16038358-16038377 Msa0010580:three_prime_UTR 35.0%
TACAAAAAAATCAGCACTGC+TGG - chr1_1:16038411-16038430 None:intergenic 35.0%
!!! GGGTTTTGGTTTTGGTTTTG+GGG + chr1_1:16031529-16031548 Msa0010580:five_prime_UTR 40.0%
! GGAGGAGATTTGGAATACAA+AGG - chr1_1:16031633-16031652 None:intergenic 40.0%
AAAATCCAGTTAGGACTAGG+AGG - chr1_1:16031651-16031670 None:intergenic 40.0%
AAGACATGAACATCTTGTCG+CGG + chr1_1:16032083-16032102 Msa0010580:intron 40.0%
TGATGTTTATTTGTGCAGGG+AGG + chr1_1:16032237-16032256 Msa0010580:intron 40.0%
TTACTTGCCATCAACTTCAG+GGG + chr1_1:16032378-16032397 Msa0010580:CDS 40.0%
!!! ATTGTGTCGCGTGTTTTGAT+AGG + chr1_1:16032481-16032500 Msa0010580:intron 40.0%
!!! TTGTGTCGCGTGTTTTGATA+GGG + chr1_1:16032482-16032501 Msa0010580:intron 40.0%
CTGGTTTCTTGGTTGATCAA+AGG - chr1_1:16032858-16032877 None:intergenic 40.0%
! GTGATTTGTGGTCTGTAAGA+TGG - chr1_1:16033237-16033256 None:intergenic 40.0%
ACCAATTCAGTATTTCCCGA+TGG + chr1_1:16033348-16033367 Msa0010580:CDS 40.0%
CCAATTCAGTATTTCCCGAT+GGG + chr1_1:16033349-16033368 Msa0010580:CDS 40.0%
CAATTCAGTATTTCCCGATG+GGG + chr1_1:16033350-16033369 Msa0010580:CDS 40.0%
! GAATTTGAAACCTGCAATGG+AGG - chr1_1:16033878-16033897 None:intergenic 40.0%
!! TCTTCTTTGAGGTTCTGTTC+CGG - chr1_1:16033990-16034009 None:intergenic 40.0%
! ACGCATTTTGCTCTTCTTTG+AGG - chr1_1:16034001-16034020 None:intergenic 40.0%
CACAATTCCACTCGTTTCTA+AGG + chr1_1:16034041-16034060 Msa0010580:intron 40.0%
CACTTGATTCTTCATCCTTG+AGG - chr1_1:16034112-16034131 None:intergenic 40.0%
CTCAAGGATGAAGAATCAAG+TGG + chr1_1:16034110-16034129 Msa0010580:intron 40.0%
GAATTGGAGAATGTGACAGA+TGG + chr1_1:16034222-16034241 Msa0010580:intron 40.0%
! GAATGTGACAGATGGATTTG+CGG + chr1_1:16034230-16034249 Msa0010580:intron 40.0%
CAATTGACAAAAGATTGGGG+GGG + chr1_1:16034655-16034674 Msa0010580:intron 40.0%
AATTGACAAAAGATTGGGGG+GGG + chr1_1:16034656-16034675 Msa0010580:intron 40.0%
TTCGGCTAGTGTTTAGTACA+AGG - chr1_1:16034735-16034754 None:intergenic 40.0%
TATTTATACGTGTGCGTGTG+TGG + chr1_1:16034790-16034809 Msa0010580:intron 40.0%
ATTTGCCAAGTCAGAAAGTG+TGG + chr1_1:16034824-16034843 Msa0010580:intron 40.0%
! TTTGCCAAGTCAGAAAGTGT+GGG + chr1_1:16034825-16034844 Msa0010580:intron 40.0%
ACTTAGTTCATAGTACCCCA+TGG - chr1_1:16034908-16034927 None:intergenic 40.0%
CTAAGTTCCGTATCCAAAGA+AGG + chr1_1:16034922-16034941 Msa0010580:intron 40.0%
AGCTATCCCTTCTTTGGATA+CGG - chr1_1:16034932-16034951 None:intergenic 40.0%
ATGTAATGCAGACTCAGTTG+TGG + chr1_1:16035091-16035110 Msa0010580:intron 40.0%
CACCCAAGCAATTTAGATAG+CGG - chr1_1:16035181-16035200 None:intergenic 40.0%
TAAATTGCTTGGGTGCATTC+TGG + chr1_1:16035186-16035205 Msa0010580:CDS 40.0%
CCTCATAATCAGAGATTGGT+AGG - chr1_1:16035244-16035263 None:intergenic 40.0%
CCTACCAATCTCTGATTATG+AGG + chr1_1:16035241-16035260 Msa0010580:CDS 40.0%
TGCACCTCATAATCAGAGAT+TGG - chr1_1:16035248-16035267 None:intergenic 40.0%
CGTGGAAAACTACAAAAGCA+AGG - chr1_1:16035368-16035387 None:intergenic 40.0%
! CTTTTGTAGTTTTCCACGTC+TGG + chr1_1:16035370-16035389 Msa0010580:intron 40.0%
TGCTTGCAGACATCACATTT+CGG - chr1_1:16035439-16035458 None:intergenic 40.0%
GTAAAAATGGATGGGGAGAA+TGG + chr1_1:16035546-16035565 Msa0010580:intron 40.0%
! GTAGATTGTTTTCCTGTTCC+TGG + chr1_1:16035659-16035678 Msa0010580:intron 40.0%
GAGATATATGTCTGCAGTCA+AGG - chr1_1:16035908-16035927 None:intergenic 40.0%
GACTGCAGACATATATCTCA+TGG + chr1_1:16035909-16035928 Msa0010580:intron 40.0%
!! CAATAATGCTGGTTCCAGAA+TGG - chr1_1:16036019-16036038 None:intergenic 40.0%
GGATATATTGCCCATAAGGA+TGG + chr1_1:16036222-16036241 Msa0010580:CDS 40.0%
ATATTGCCCATAAGGATGGA+AGG + chr1_1:16036226-16036245 Msa0010580:CDS 40.0%
! TCAGCAAGTTCCTCTACTTT+TGG + chr1_1:16036355-16036374 Msa0010580:three_prime_UTR 40.0%
TTAGGACAGGAGAACATAAC+AGG - chr1_1:16036860-16036879 None:intergenic 40.0%
GAAGAGTTAATCTTGACCGT+TGG - chr1_1:16036951-16036970 None:intergenic 40.0%
TCATTCTATACGGTCTTCCA+AGG + chr1_1:16037181-16037200 Msa0010580:three_prime_UTR 40.0%
!!! CAGAAGCACTGTGTTTTACA+TGG + chr1_1:16037303-16037322 Msa0010580:intron 40.0%
TTCACAAAAGCTAAACCCCA+TGG - chr1_1:16037413-16037432 None:intergenic 40.0%
AGAACGCAAAGGTTCTATCA+TGG - chr1_1:16037441-16037460 None:intergenic 40.0%
CTAACTGCAAAAGAACGCAA+AGG - chr1_1:16037452-16037471 None:intergenic 40.0%
! CTTTGCGTTCTTTTGCAGTT+AGG + chr1_1:16037450-16037469 Msa0010580:intron 40.0%
! CGTTCTTTTGCAGTTAGGAA+AGG + chr1_1:16037455-16037474 Msa0010580:intron 40.0%
AAGATGCTGATGCGATAAGA+GGG - chr1_1:16037654-16037673 None:intergenic 40.0%
AAAGATGCTGATGCGATAAG+AGG - chr1_1:16037655-16037674 None:intergenic 40.0%
! AAATTGATTCTCCCAAGGGA+TGG - chr1_1:16037686-16037705 None:intergenic 40.0%
! GCACAAATTGATTCTCCCAA+GGG - chr1_1:16037690-16037709 None:intergenic 40.0%
! TGCACAAATTGATTCTCCCA+AGG - chr1_1:16037691-16037710 None:intergenic 40.0%
! AGTTCCAGCGTACATTTTCT+TGG + chr1_1:16037847-16037866 Msa0010580:intron 40.0%
GTAACCAAGAAAATGTACGC+TGG - chr1_1:16037854-16037873 None:intergenic 40.0%
ATATGATGCAGATGAGGATG+AGG - chr1_1:16038099-16038118 None:intergenic 40.0%
!! CTCCTTTTGAGAAGAAGCTT+GGG + chr1_1:16038141-16038160 Msa0010580:three_prime_UTR 40.0%
!! TCCTTTTGAGAAGAAGCTTG+GGG + chr1_1:16038142-16038161 Msa0010580:three_prime_UTR 40.0%
GGGAAATGTCTGATTCAATC+TGG - chr1_1:16038181-16038200 None:intergenic 40.0%
TCAGACATTTCCCCTGTTTA+TGG + chr1_1:16038188-16038207 Msa0010580:three_prime_UTR 40.0%
ATTTCCCCTGTTTATGGAGA+TGG + chr1_1:16038194-16038213 Msa0010580:three_prime_UTR 40.0%
TTTCCCCTGTTTATGGAGAT+GGG + chr1_1:16038195-16038214 Msa0010580:three_prime_UTR 40.0%
AAACCCATCTCCATAAACAG+GGG - chr1_1:16038201-16038220 None:intergenic 40.0%
CTAAACCCATCTCCATAAAC+AGG - chr1_1:16038203-16038222 None:intergenic 40.0%
CAAAAAGCAGTTCGCAAGTA+TGG + chr1_1:16038230-16038249 Msa0010580:three_prime_UTR 40.0%
GTTTCTAATCACAACAGGCT+AGG - chr1_1:16038359-16038378 None:intergenic 40.0%
TCCTCCTTCTTACGAAGGAA+GGG - chr1_1:16031558-16031577 None:intergenic 45.0%
TTCCTCCTTCTTACGAAGGA+AGG - chr1_1:16031559-16031578 None:intergenic 45.0%
CTTCTTCCTCCTTCTTACGA+AGG - chr1_1:16031563-16031582 None:intergenic 45.0%
CTTCGTAAGAAGGAGGAAGA+AGG + chr1_1:16031561-16031580 Msa0010580:five_prime_UTR 45.0%
GTGTGTGTTGTGTGTGAACA+AGG + chr1_1:16031583-16031602 Msa0010580:five_prime_UTR 45.0%
TGTGTTGTGTGTGAACAAGG+AGG + chr1_1:16031586-16031605 Msa0010580:five_prime_UTR 45.0%
GTTAGGACTAGGAGGAGATT+TGG - chr1_1:16031643-16031662 None:intergenic 45.0%
AATCTCCTCCTAGTCCTAAC+TGG + chr1_1:16031643-16031662 Msa0010580:five_prime_UTR 45.0%
ACAAGTACCCCTGAAGTTGA+TGG - chr1_1:16032388-16032407 None:intergenic 45.0%
! CTGGTGTTGGAAAATGTTGC+AGG + chr1_1:16032441-16032460 Msa0010580:intron 45.0%
! TCGTGCTATTGCGTTGTCTT+TGG + chr1_1:16032552-16032571 Msa0010580:CDS 45.0%
CCCATCGGGAAATACTGAAT+TGG - chr1_1:16033352-16033371 None:intergenic 45.0%
AACTCATACCTGTACCCCAT+CGG - chr1_1:16033367-16033386 None:intergenic 45.0%
CAATTCCCACTTATTCGTGC+TGG + chr1_1:16033408-16033427 Msa0010580:intron 45.0%
CAAGACCAGCACGAATAAGT+GGG - chr1_1:16033416-16033435 None:intergenic 45.0%
ACAAGACCAGCACGAATAAG+TGG - chr1_1:16033417-16033436 None:intergenic 45.0%
TGACAAAAGATAGGGGGGAA+AGG - chr1_1:16033595-16033614 None:intergenic 45.0%
CAGAAAGGGGGAAAAAGATG+GGG - chr1_1:16033663-16033682 None:intergenic 45.0%
CCAGAAAGGGGGAAAAAGAT+GGG - chr1_1:16033664-16033683 None:intergenic 45.0%
ACCAGAAAGGGGGAAAAAGA+TGG - chr1_1:16033665-16033684 None:intergenic 45.0%
!! TTTCCCCCTTTCTGGTTTGA+AGG + chr1_1:16033669-16033688 Msa0010580:intron 45.0%
AAAGGGAGCTAGCACAGTAA+TGG + chr1_1:16033807-16033826 Msa0010580:intron 45.0%
! TTTGAAACCTGCAATGGAGG+TGG - chr1_1:16033875-16033894 None:intergenic 45.0%
CTACGATTGCGAGGAAAATG+AGG - chr1_1:16033912-16033931 None:intergenic 45.0%
TGATTGTGACTACGATTGCG+AGG - chr1_1:16033921-16033940 None:intergenic 45.0%
AGAAACGAGTGGAATTGTGC+TGG - chr1_1:16034040-16034059 None:intergenic 45.0%
ACGATCTCCTTAGAAACGAG+TGG - chr1_1:16034051-16034070 None:intergenic 45.0%
! ACTCGTTTCTAAGGAGATCG+TGG + chr1_1:16034050-16034069 Msa0010580:intron 45.0%
TTGACGGTGATGAATCCTCA+AGG + chr1_1:16034094-16034113 Msa0010580:intron 45.0%
CGAAGAGAGTAGTAGTGTGT+CGG + chr1_1:16034143-16034162 Msa0010580:intron 45.0%
! TGACAGATGGATTTGCGGAA+GGG + chr1_1:16034235-16034254 Msa0010580:intron 45.0%
GTGATAGGAGAAGGAGGATA+TGG + chr1_1:16034261-16034280 Msa0010580:intron 45.0%
ACCAGAATGGGGGAAAAAGA+TGG + chr1_1:16034589-16034608 Msa0010580:intron 45.0%
CCAGAATGGGGGAAAAAGAT+GGG + chr1_1:16034590-16034609 Msa0010580:intron 45.0%
CAGAATGGGGGAAAAAGATG+GGG + chr1_1:16034591-16034610 Msa0010580:intron 45.0%
ATTGACAAAAGATTGGGGGG+GGG + chr1_1:16034657-16034676 Msa0010580:intron 45.0%
! TTGCCAAGTCAGAAAGTGTG+GGG + chr1_1:16034826-16034845 Msa0010580:intron 45.0%
TAACCCCACACTTTCTGACT+TGG - chr1_1:16034832-16034851 None:intergenic 45.0%
TGGCCGCTATCTAAATTGCT+TGG + chr1_1:16035175-16035194 Msa0010580:CDS 45.0%
GGCCGCTATCTAAATTGCTT+GGG + chr1_1:16035176-16035195 Msa0010580:CDS 45.0%
AGATTGGTAGGTTGCAAGCA+CGG - chr1_1:16035232-16035251 None:intergenic 45.0%
GAAAGGGTAATTTCCAGACG+TGG - chr1_1:16035386-16035405 None:intergenic 45.0%
TGCAGACATCACATTTCGGA+TGG - chr1_1:16035435-16035454 None:intergenic 45.0%
ACTCCCATAAGACCGTAATC+TGG - chr1_1:16035582-16035601 None:intergenic 45.0%
! TTGTTTTCCTGTTCCTGGTC+CGG + chr1_1:16035664-16035683 Msa0010580:intron 45.0%
AATTATTCCGGACCAGGAAC+AGG - chr1_1:16035674-16035693 None:intergenic 45.0%
TGTTCCTGGTCCGGAATAAT+TGG + chr1_1:16035673-16035692 Msa0010580:intron 45.0%
! GGCCTGTTGCCGTTAATTTT+TGG + chr1_1:16035930-16035949 Msa0010580:intron 45.0%
ATAAGACCAGCAGGGTTTGT+TGG - chr1_1:16035980-16035999 None:intergenic 45.0%
AATATAGGGCACACCCATTC+TGG + chr1_1:16036002-16036021 Msa0010580:CDS 45.0%
CATGTGAAGGGCAATAATGC+TGG - chr1_1:16036030-16036049 None:intergenic 45.0%
TCTCTTTACATGCAGCCACA+AGG + chr1_1:16036195-16036214 Msa0010580:intron 45.0%
CTCTTTACATGCAGCCACAA+GGG + chr1_1:16036196-16036215 Msa0010580:intron 45.0%
GACGGGATATATTGCCCATA+AGG + chr1_1:16036218-16036237 Msa0010580:CDS 45.0%
GAGCTTCCTTCCATCCTTAT+GGG - chr1_1:16036235-16036254 None:intergenic 45.0%
AGAGCTTCCTTCCATCCTTA+TGG - chr1_1:16036236-16036255 None:intergenic 45.0%
GTGTCTCGATTCTGCTATCA+TGG + chr1_1:16036263-16036282 Msa0010580:CDS 45.0%
!! ACAAGCACTGAATGAAGCGA+GGG + chr1_1:16036385-16036404 Msa0010580:three_prime_UTR 45.0%
TGGTCTCAGGCATATGATAG+TGG - chr1_1:16036796-16036815 None:intergenic 45.0%
TATCATATGCCTGAGACCAG+AGG + chr1_1:16036797-16036816 Msa0010580:three_prime_UTR 45.0%
TCTAACAGTCTGCAACTAGG+AGG - chr1_1:16037260-16037279 None:intergenic 45.0%
TAAACCCCATGGATATCACG+GGG - chr1_1:16037402-16037421 None:intergenic 45.0%
CTAAACCCCATGGATATCAC+GGG - chr1_1:16037403-16037422 None:intergenic 45.0%
GCTAAACCCCATGGATATCA+CGG - chr1_1:16037404-16037423 None:intergenic 45.0%
TCAAAACCGCAACACATGCT+TGG - chr1_1:16037516-16037535 None:intergenic 45.0%
TTTGTTTCCGTCCATCCCTT+GGG + chr1_1:16037672-16037691 Msa0010580:intron 45.0%
CTCATGAGCTAGAATCGATC+CGG - chr1_1:16037746-16037765 None:intergenic 45.0%
CTCATGAGATGATGCATGCA+TGG + chr1_1:16037758-16037777 Msa0010580:three_prime_UTR 45.0%
CCAAGCTTCTTCTCAAAAGG+AGG - chr1_1:16038143-16038162 None:intergenic 45.0%
!! CCTCCTTTTGAGAAGAAGCT+TGG + chr1_1:16038140-16038159 Msa0010580:three_prime_UTR 45.0%
TCCCCAAGCTTCTTCTCAAA+AGG - chr1_1:16038146-16038165 None:intergenic 45.0%
! TATGGAGATGGGTTTAGAGC+CGG + chr1_1:16038206-16038225 Msa0010580:three_prime_UTR 45.0%
!!! CTTGCGAACTGCTTTTTGAC+CGG - chr1_1:16038228-16038247 None:intergenic 45.0%
TTCGCAAGTATGGCCTAGAA+AGG + chr1_1:16038240-16038259 Msa0010580:three_prime_UTR 45.0%
TATGGTGAAGGGTCCTTTCT+AGG - chr1_1:16038256-16038275 None:intergenic 45.0%
AAGGACCCTTCACCATATCA+AGG + chr1_1:16038259-16038278 Msa0010580:three_prime_UTR 45.0%
CGTCACCTTGATATGGTGAA+GGG - chr1_1:16038267-16038286 None:intergenic 45.0%
CCTTCACCATATCAAGGTGA+CGG + chr1_1:16038265-16038284 Msa0010580:three_prime_UTR 45.0%
CTTCACCATATCAAGGTGAC+GGG + chr1_1:16038266-16038285 Msa0010580:three_prime_UTR 45.0%
AACTACCCGTCACCTTGATA+TGG - chr1_1:16038274-16038293 None:intergenic 45.0%
CCTCCGTTTCTAATCACAAC+AGG - chr1_1:16038364-16038383 None:intergenic 45.0%
CCTGTTGTGATTAGAAACGG+AGG + chr1_1:16038361-16038380 Msa0010580:three_prime_UTR 45.0%
TGTGATTAGAAACGGAGGCT+TGG + chr1_1:16038366-16038385 Msa0010580:three_prime_UTR 45.0%
GTGATTAGAAACGGAGGCTT+GGG + chr1_1:16038367-16038386 Msa0010580:three_prime_UTR 45.0%
!!! ACAAAAATATATTAATTTTA+GGG - chr1_1:16033096-16033115 None:intergenic 5.0%
!!! AACAAAAATATATTAATTTT+AGG - chr1_1:16033097-16033116 None:intergenic 5.0%
GTCTCCCTTCCTTCGTAAGA+AGG + chr1_1:16031551-16031570 Msa0010580:five_prime_UTR 50.0%
TCCCTTCCTTCGTAAGAAGG+AGG + chr1_1:16031554-16031573 Msa0010580:five_prime_UTR 50.0%
! AAGGAAAGGGGTGTGTGTGT+GGG - chr1_1:16031614-16031633 None:intergenic 50.0%
! AAAGGAAAGGGGTGTGTGTG+TGG - chr1_1:16031615-16031634 None:intergenic 50.0%
TTGGAGTCACCTCCCAAACA+TGG + chr1_1:16033307-16033326 Msa0010580:CDS 50.0%
AGTATTTCCCGATGGGGTAC+AGG + chr1_1:16033356-16033375 Msa0010580:CDS 50.0%
ACTCATACCTGTACCCCATC+GGG - chr1_1:16033366-16033385 None:intergenic 50.0%
GGGGTACAGGTATGAGTTAG+AGG + chr1_1:16033369-16033388 Msa0010580:intron 50.0%
AGGGCTGATGTGATGTACAC+TGG + chr1_1:16033492-16033511 Msa0010580:intron 50.0%
! CCCATCTTTTTCCCCCTTTC+TGG + chr1_1:16033661-16033680 Msa0010580:intron 50.0%
GCAATGGAGGTGGTTAGCAA+CGG - chr1_1:16033865-16033884 None:intergenic 50.0%
TTGCTAACCACCTCCATTGC+AGG + chr1_1:16033865-16033884 Msa0010580:intron 50.0%
! CGTTTCTAAGGAGATCGTGG+AGG + chr1_1:16034053-16034072 Msa0010580:intron 50.0%
AGAGAGTAGTAGTGTGTCGG+TGG + chr1_1:16034146-16034165 Msa0010580:intron 50.0%
GGGTCGGTGGTATAGTTTGA+AGG + chr1_1:16034200-16034219 Msa0010580:intron 50.0%
! GTGACAGATGGATTTGCGGA+AGG + chr1_1:16034234-16034253 Msa0010580:intron 50.0%
TTTGCGGAAGGGAACGTGAT+AGG + chr1_1:16034246-16034265 Msa0010580:intron 50.0%
GAAGGGAACGTGATAGGAGA+AGG + chr1_1:16034252-16034271 Msa0010580:intron 50.0%
TGATGCAAAGGACAGGACCA+AGG - chr1_1:16034413-16034432 None:intergenic 50.0%
TGGTCCTGTCCTTTGCATCA+CGG + chr1_1:16034413-16034432 Msa0010580:intron 50.0%
TGGGGGTCTTCAAACCAGAA+TGG + chr1_1:16034576-16034595 Msa0010580:intron 50.0%
GGGGGTCTTCAAACCAGAAT+GGG + chr1_1:16034577-16034596 Msa0010580:intron 50.0%
GGGGTCTTCAAACCAGAATG+GGG + chr1_1:16034578-16034597 Msa0010580:intron 50.0%
GGGTCTTCAAACCAGAATGG+GGG + chr1_1:16034579-16034598 Msa0010580:intron 50.0%
! CCCATCTTTTTCCCCCATTC+TGG - chr1_1:16034593-16034612 None:intergenic 50.0%
TTGACAAAAGATTGGGGGGG+GGG + chr1_1:16034658-16034677 Msa0010580:intron 50.0%
GCTGGCTGCAATACTGAGAT+TGG + chr1_1:16035149-16035168 Msa0010580:CDS 50.0%
CACACCAATTATTCCGGACC+AGG - chr1_1:16035680-16035699 None:intergenic 50.0%
GGTCCGGAATAATTGGTGTG+CGG + chr1_1:16035680-16035699 Msa0010580:intron 50.0%
GTCCGGAATAATTGGTGTGC+GGG + chr1_1:16035681-16035700 Msa0010580:intron 50.0%
CACCCGCACACCAATTATTC+CGG - chr1_1:16035686-16035705 None:intergenic 50.0%
ACCTGCAATTGGAGGGAGAA+TGG + chr1_1:16035799-16035818 Msa0010580:intron 50.0%
CCTGCAATTGGAGGGAGAAT+GGG + chr1_1:16035800-16035819 Msa0010580:intron 50.0%
CAGATTCCAACAAACCCTGC+TGG + chr1_1:16035971-16035990 Msa0010580:intron 50.0%
TTCGCTCACAGCTACAACAG+CGG - chr1_1:16036069-16036088 None:intergenic 50.0%
CTGTTGTAGCTGTGAGCGAA+TGG + chr1_1:16036069-16036088 Msa0010580:CDS 50.0%
TTGTAGCTGTGAGCGAATGG+AGG + chr1_1:16036072-16036091 Msa0010580:CDS 50.0%
TTACATGCAGCCACAAGGGA+CGG + chr1_1:16036200-16036219 Msa0010580:intron 50.0%
GCAATATATCCCGTCCCTTG+TGG - chr1_1:16036213-16036232 None:intergenic 50.0%
!! GACAAGCACTGAATGAAGCG+AGG + chr1_1:16036384-16036403 Msa0010580:three_prime_UTR 50.0%
CTATTTCCTGTGCCGAGTCT+AGG - chr1_1:16037105-16037124 None:intergenic 50.0%
GGGTCTAACAGTCTGCAACT+AGG - chr1_1:16037263-16037282 None:intergenic 50.0%
AAACCCCATGGATATCACGG+GGG - chr1_1:16037401-16037420 None:intergenic 50.0%
CTACTGCCAAGCATGTGTTG+CGG + chr1_1:16037507-16037526 Msa0010580:intron 50.0%
! CTTTGTTTCCGTCCATCCCT+TGG + chr1_1:16037671-16037690 Msa0010580:intron 50.0%
TGATTCTCCCAAGGGATGGA+CGG - chr1_1:16037682-16037701 None:intergenic 50.0%
AGATGATGCATGCATGGCTG+CGG + chr1_1:16037764-16037783 Msa0010580:three_prime_UTR 50.0%
!!! GTCAGGTTTTGGCTCACATG+TGG + chr1_1:16038027-16038046 Msa0010580:three_prime_UTR 50.0%
!!! GGTTTTGGCTCACATGTGGT+TGG + chr1_1:16038031-16038050 Msa0010580:three_prime_UTR 50.0%
TCTGAGCTTTCTTCTGCACC+AGG + chr1_1:16038056-16038075 Msa0010580:three_prime_UTR 50.0%
GCTGATGAAAAGTTGCTGCC+TGG - chr1_1:16038077-16038096 None:intergenic 50.0%
CCGTCACCTTGATATGGTGA+AGG - chr1_1:16038268-16038287 None:intergenic 50.0%
AAACGGAGGCTTGGGTACTT+TGG + chr1_1:16038375-16038394 Msa0010580:three_prime_UTR 50.0%
! AGGAAAGGGGTGTGTGTGTG+GGG - chr1_1:16031613-16031632 None:intergenic 55.0%
TGAACATCTTGTCGCGGCAC+TGG + chr1_1:16032089-16032108 Msa0010580:intron 55.0%
CAGACACTGACACGCTACAC+CGG - chr1_1:16032158-16032177 None:intergenic 55.0%
GTGTAGCGTGTCAGTGTCTG+TGG + chr1_1:16032158-16032177 Msa0010580:intron 55.0%
GGGCCTTCAAACCAGAAAGG+GGG - chr1_1:16033675-16033694 None:intergenic 55.0%
GGGGCCTTCAAACCAGAAAG+GGG - chr1_1:16033676-16033695 None:intergenic 55.0%
GGGGGCCTTCAAACCAGAAA+GGG - chr1_1:16033677-16033696 None:intergenic 55.0%
TGGGGGCCTTCAAACCAGAA+AGG - chr1_1:16033678-16033697 None:intergenic 55.0%
TCACCGTTCTCTGCATTCGC+CGG + chr1_1:16033968-16033987 Msa0010580:intron 55.0%
GTTCCGGCGAATGCAGAGAA+CGG - chr1_1:16033974-16033993 None:intergenic 55.0%
GGGAACGTGATAGGAGAAGG+AGG + chr1_1:16034255-16034274 Msa0010580:intron 55.0%
ACCAAGGAAGCTGCAGAGAG+GGG - chr1_1:16034397-16034416 None:intergenic 55.0%
GACCAAGGAAGCTGCAGAGA+GGG - chr1_1:16034398-16034417 None:intergenic 55.0%
TCCTGTCCTTTGCATCACGG+CGG + chr1_1:16034416-16034435 Msa0010580:intron 55.0%
TGACAAAAGATTGGGGGGGG+GGG + chr1_1:16034659-16034678 Msa0010580:intron 55.0%
GTAGGTTGCAAGCACGGCAA+CGG - chr1_1:16035226-16035245 None:intergenic 55.0%
CCCATTCTCCCTCCAATTGC+AGG - chr1_1:16035803-16035822 None:intergenic 55.0%
TCGCTCACAGCTACAACAGC+GGG - chr1_1:16036068-16036087 None:intergenic 55.0%
TACATGCAGCCACAAGGGAC+GGG + chr1_1:16036201-16036220 Msa0010580:intron 55.0%
! AGCACTGAATGAAGCGAGGG+AGG + chr1_1:16036388-16036407 Msa0010580:three_prime_UTR 55.0%
GCACTGAATGAAGCGAGGGA+GGG + chr1_1:16036389-16036408 Msa0010580:three_prime_UTR 55.0%
CACTGAATGAAGCGAGGGAG+GGG + chr1_1:16036390-16036409 Msa0010580:three_prime_UTR 55.0%
ACTGAATGAAGCGAGGGAGG+GGG + chr1_1:16036391-16036410 Msa0010580:three_prime_UTR 55.0%
! CAGTGCTGAGTTCCTCTGAG+AGG - chr1_1:16036829-16036848 None:intergenic 55.0%
AGAAGACCTAGACTCGGCAC+AGG + chr1_1:16037096-16037115 Msa0010580:three_prime_UTR 55.0%
CAGCGCGCAGTCAGTTTGTA+TGG - chr1_1:16037144-16037163 None:intergenic 55.0%
TGCTTCCCCCGTGATATCCA+TGG + chr1_1:16037393-16037412 Msa0010580:intron 55.0%
GCTTCCCCCGTGATATCCAT+GGG + chr1_1:16037394-16037413 Msa0010580:intron 55.0%
CTTCCCCCGTGATATCCATG+GGG + chr1_1:16037395-16037414 Msa0010580:intron 55.0%
ACACTGACACGCTACACCGG+TGG - chr1_1:16032155-16032174 None:intergenic 60.0%
GCACCTTCCGCCAATTCCTC+CGG + chr1_1:16033829-16033848 Msa0010580:intron 60.0%
AACACCGCCGGAGGAATTGG+CGG - chr1_1:16033839-16033858 None:intergenic 60.0%
CACAACACCGCCGGAGGAAT+TGG - chr1_1:16033842-16033861 None:intergenic 60.0%
TAGCAACGGCACAACACCGC+CGG - chr1_1:16033851-16033870 None:intergenic 60.0%
TCCCCTCTCTGCAGCTTCCT+TGG + chr1_1:16034393-16034412 Msa0010580:intron 60.0%
GGACCAAGGAAGCTGCAGAG+AGG - chr1_1:16034399-16034418 None:intergenic 60.0%
TCCGCCGTGATGCAAAGGAC+AGG - chr1_1:16034420-16034439 None:intergenic 60.0%
ACAGCTCCGCCGTGATGCAA+AGG - chr1_1:16034425-16034444 None:intergenic 60.0%
GACAAAAGATTGGGGGGGGG+GGG + chr1_1:16034660-16034679 Msa0010580:intron 60.0%
ACAAAAGATTGGGGGGGGGG+GGG + chr1_1:16034661-16034680 Msa0010580:intron 60.0%
!! GCACGGCAACGGAAGCATTC+AGG - chr1_1:16035215-16035234 None:intergenic 60.0%
AGGCAGAGTCCTCTGGTCTC+AGG - chr1_1:16036809-16036828 None:intergenic 60.0%
! CTCTGAGAGGCAGAGTCCTC+TGG - chr1_1:16036816-16036835 None:intergenic 60.0%
CAGAGGACTCTGCCTCTCAG+AGG + chr1_1:16036814-16036833 Msa0010580:three_prime_UTR 60.0%
CATGCATGGCTGCGGCTAAC+AGG + chr1_1:16037772-16037791 Msa0010580:three_prime_UTR 60.0%
CCTTCCGCCAATTCCTCCGG+CGG + chr1_1:16033832-16033851 Msa0010580:intron 65.0%
CACCCTATGTTCGCCGACGG+CGG - chr1_1:16034180-16034199 None:intergenic 65.0%
GCCGTCGGCGAACATAGGGT+GGG + chr1_1:16034179-16034198 Msa0010580:intron 65.0%
CCCCACCCTATGTTCGCCGA+CGG - chr1_1:16034183-16034202 None:intergenic 65.0%
CCGTCGGCGAACATAGGGTG+GGG + chr1_1:16034180-16034199 Msa0010580:intron 65.0%
CGGCGAACATAGGGTGGGGT+CGG + chr1_1:16034184-16034203 Msa0010580:intron 65.0%
CGAACATAGGGTGGGGTCGG+TGG + chr1_1:16034187-16034206 Msa0010580:intron 65.0%
CAAAAGATTGGGGGGGGGGG+GGG + chr1_1:16034662-16034681 Msa0010580:intron 65.0%
AAAAGATTGGGGGGGGGGGG+GGG + chr1_1:16034663-16034682 Msa0010580:intron 65.0%
CCGCCGGAGGAATTGGCGGA+AGG - chr1_1:16033835-16033854 None:intergenic 70.0%
CAACGGCACAACACCGCCGG+AGG - chr1_1:16033848-16033867 None:intergenic 70.0%
CCTATGTTCGCCGACGGCGG+CGG - chr1_1:16034177-16034196 None:intergenic 70.0%
CGCCGCCGTCGGCGAACATA+GGG + chr1_1:16034175-16034194 Msa0010580:intron 70.0%
CGCCGTCGGCGAACATAGGG+TGG + chr1_1:16034178-16034197 Msa0010580:intron 70.0%
AAAGATTGGGGGGGGGGGGG+GGG + chr1_1:16034664-16034683 Msa0010580:intron 70.0%
GGTGGAGTCACCGCCGCCGT+CGG + chr1_1:16034164-16034183 Msa0010580:intron 75.0%
CCGCCGCCGTCGGCGAACAT+AGG + chr1_1:16034174-16034193 Msa0010580:intron 75.0%
AAGATTGGGGGGGGGGGGGG+GGG + chr1_1:16034665-16034684 Msa0010580:intron 75.0%
! AGATTGGGGGGGGGGGGGGG+GGG + chr1_1:16034666-16034685 Msa0010580:intron 80.0%
! GATTGGGGGGGGGGGGGGGG+GGG + chr1_1:16034667-16034686 Msa0010580:intron 85.0%
! ATTGGGGGGGGGGGGGGGGG+GGG + chr1_1:16034668-16034687 Msa0010580:intron 85.0%
! TTGGGGGGGGGGGGGGGGGG+GGG + chr1_1:16034669-16034688 Msa0010580:intron 90.0%
! TGGGGGGGGGGGGGGGGGGG+GGG + chr1_1:16034670-16034689 Msa0010580:intron 95.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 16031518 16038494 16031518 ID=Msa0010580;Name=Msa0010580
chr1_1 mRNA 16031518 16038494 16031518 ID=Msa0010580-mRNA-1;Parent=Msa0010580;Name=Msa0010580-mRNA-1;_AED=0.13;_eAED=0.13;_QI=523|1|1|1|0.63|0.66|12|816|260
chr1_1 exon 16031518 16031997 16031518 ID=Msa0010580-mRNA-1:exon:5804;Parent=Msa0010580-mRNA-1
chr1_1 exon 16032255 16032399 16032255 ID=Msa0010580-mRNA-1:exon:5805;Parent=Msa0010580-mRNA-1
chr1_1 exon 16032517 16032607 16032517 ID=Msa0010580-mRNA-1:exon:5806;Parent=Msa0010580-mRNA-1
chr1_1 exon 16033245 16033377 16033245 ID=Msa0010580-mRNA-1:exon:5807;Parent=Msa0010580-mRNA-1
chr1_1 exon 16035142 16035262 16035142 ID=Msa0010580-mRNA-1:exon:5808;Parent=Msa0010580-mRNA-1
chr1_1 exon 16035379 16035462 16035379 ID=Msa0010580-mRNA-1:exon:5809;Parent=Msa0010580-mRNA-1
chr1_1 exon 16035974 16036093 16035974 ID=Msa0010580-mRNA-1:exon:5810;Parent=Msa0010580-mRNA-1
chr1_1 exon 16036210 16036421 16036210 ID=Msa0010580-mRNA-1:exon:5811;Parent=Msa0010580-mRNA-1
chr1_1 exon 16036791 16036847 16036791 ID=Msa0010580-mRNA-1:exon:5812;Parent=Msa0010580-mRNA-1
chr1_1 exon 16037090 16037202 16037090 ID=Msa0010580-mRNA-1:exon:5813;Parent=Msa0010580-mRNA-1
chr1_1 exon 16037735 16037793 16037735 ID=Msa0010580-mRNA-1:exon:5814;Parent=Msa0010580-mRNA-1
chr1_1 exon 16037988 16038494 16037988 ID=Msa0010580-mRNA-1:exon:5815;Parent=Msa0010580-mRNA-1
chr1_1 five_prime_UTR 16031518 16031997 16031518 ID=Msa0010580-mRNA-1:five_prime_utr;Parent=Msa0010580-mRNA-1
chr1_1 five_prime_UTR 16032255 16032297 16032255 ID=Msa0010580-mRNA-1:five_prime_utr;Parent=Msa0010580-mRNA-1
chr1_1 CDS 16032298 16032399 16032298 ID=Msa0010580-mRNA-1:cds;Parent=Msa0010580-mRNA-1
chr1_1 CDS 16032517 16032607 16032517 ID=Msa0010580-mRNA-1:cds;Parent=Msa0010580-mRNA-1
chr1_1 CDS 16033245 16033377 16033245 ID=Msa0010580-mRNA-1:cds;Parent=Msa0010580-mRNA-1
chr1_1 CDS 16035142 16035262 16035142 ID=Msa0010580-mRNA-1:cds;Parent=Msa0010580-mRNA-1
chr1_1 CDS 16035379 16035462 16035379 ID=Msa0010580-mRNA-1:cds;Parent=Msa0010580-mRNA-1
chr1_1 CDS 16035974 16036093 16035974 ID=Msa0010580-mRNA-1:cds;Parent=Msa0010580-mRNA-1
chr1_1 CDS 16036210 16036341 16036210 ID=Msa0010580-mRNA-1:cds;Parent=Msa0010580-mRNA-1
chr1_1 three_prime_UTR 16036342 16036421 16036342 ID=Msa0010580-mRNA-1:three_prime_utr;Parent=Msa0010580-mRNA-1
chr1_1 three_prime_UTR 16036791 16036847 16036791 ID=Msa0010580-mRNA-1:three_prime_utr;Parent=Msa0010580-mRNA-1
chr1_1 three_prime_UTR 16037090 16037202 16037090 ID=Msa0010580-mRNA-1:three_prime_utr;Parent=Msa0010580-mRNA-1
chr1_1 three_prime_UTR 16037735 16037793 16037735 ID=Msa0010580-mRNA-1:three_prime_utr;Parent=Msa0010580-mRNA-1
chr1_1 three_prime_UTR 16037988 16038494 16037988 ID=Msa0010580-mRNA-1:three_prime_utr;Parent=Msa0010580-mRNA-1
Gene Sequence

>Msa0010580

ATGGGTTGGCTTAGTAGAATTTTTAAAGGGTCTGATCATAAGGTTTCTGAAGGGCATTATTATAAAGATGATTCGAGTTATTACTTGCCATCAACTTCAGGGGATGATTGGACTGAGAACGAGAATGAAGACATTGATCGTGCTATTGCGTTGTCTTTGGTAGAAGAAAATCAGAAAGTGAAAAATGTAAAAGACCACAAATCACAATTAGAAGAAGATGAACAACTTGCCAGAGCAATAGAAGAAAGTCTAAATTTGGAGTCACCTCCCAAACATGGAAATGATAACATGTATCAACCAATTCAGTATTTCCCGATGGGGTACAGGATATGTGCTGGCTGCAATACTGAGATTGGTTATGGCCGCTATCTAAATTGCTTGGGTGCATTCTGGCATCCTGAATGCTTCCGTTGCCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTTTCCACGTCTGGAAATTACCCTTTCCATAAAGCATGCTATAAGGAAAGCTACCATCCGAAATGTGATGTCTGCAAGCACTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACACCCATTCTGGAACCAGCATTATTGCCCTTCACATGAACATGATAACACTGCCCGCTGTTGTAGCTGTGAGCGAATGGAGCCACAAGGGACGGGATATATTGCCCATAAGGATGGAAGGAAGCTCTGCTTAGAGTGTCTCGATTCTGCTATCATGGATACTAATGAATGTCAGCCCCTTCATGCTGATATACTGAAGTTTATGAAAGCATAA
Protein sequence

>Msa0010580

MGWLSRIFKGSDHKVSEGHYYKDDSSYYLPSTSGDDWTENENEDIDRAIALSLVEENQKVKNVKDHKSQLEEDEQLARAIEESLNLESPPKHGNDNMYQPIQYFPMGYRICAGCNTEIGYGRYLNCLGAFWHPECFRCRACNLPISDYEFSTSGNYPFHKACYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWNQHYCPSHEHDNTARCCSCERMEPQGTGYIAHKDGRKLCLECLDSAIMDTNECQPLHADILKFMKA*