AlfalfaGEDB | Msa0010580

M. sativa cultivar zhongmu-4 / Msa0010580

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008285 GO:0009653 GO:0009791 GO:0009908 GO:0010154 GO:0016787 GO:0019538 GO:0022414 GO:0032182 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0042127 GO:0043130 GO:0043170 GO:0044238 GO:0045926 GO:0046620 GO:0046621 GO:0048316 GO:0048317 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1905392 GO:1905623 GO:2000024 GO:2000026
PFAM: PF00412.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0010580	sp\|P0C7Q8\|DA1_ARATH	52.978	319	87	6	1	257	1	318	1.17e-107	324

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0010580	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010580	Msa0050970	0.868745	5.197227e-66	-8.615850e-47
Msa0010580	Msa0145700	0.871203	8.175166e-67	-8.615850e-47
Msa0010580	Msa0184750	0.805635	1.213456e-49	-8.615850e-47
Msa0010580	Msa0297950	0.811196	7.899626e-51	-8.615850e-47
Msa0010580	Msa0481770	0.802143	6.451088e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0010580	MtrunA17_Chr1g0154501	98.462	260	4	0	1	260	1	260	0.0	548
Msa0010580	MtrunA17_Chr5g0403261	48.060	335	96	4	1	257	1	335	1.10e-105	310
Msa0010580	MtrunA17_Chr8g0373781	52.769	307	95	5	1	257	1	307	5.62e-101	304
Msa0010580	MtrunA17_Chr5g0436051	46.538	260	128	4	1	254	144	398	1.86e-75	240
Msa0010580	MtrunA17_Chr3g0112601	46.296	270	117	8	1	254	31	288	8.22e-74	233
Msa0010580	MtrunA17_Chr5g0403301	72.500	80	22	0	178	257	27	106	6.35e-36	129
Msa0010580	MtrunA17_Chr5g0403291	50.000	104	52	0	106	209	379	482	7.07e-33	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0010580	AT1G19270.1	52.978	319	87	6	1	257	1	318	1.19e-108	324
Msa0010580	AT1G19270.2	52.978	319	87	6	1	257	1	318	1.19e-108	324
Msa0010580	AT4G36860.2	61.574	216	78	2	43	257	125	336	1.32e-95	288
Msa0010580	AT4G36860.1	61.574	216	78	2	43	257	125	336	8.20e-95	289
Msa0010580	AT4G36860.3	61.574	216	78	2	43	257	149	360	1.10e-94	290
Msa0010580	AT2G39830.4	46.067	267	121	6	1	254	49	305	1.10e-74	234
Msa0010580	AT2G39830.1	46.067	267	121	6	1	254	49	305	3.43e-74	235
Msa0010580	AT2G39830.2	46.067	267	121	6	1	254	49	305	4.09e-74	235
Msa0010580	AT2G39830.3	46.124	258	125	4	1	254	49	296	2.86e-73	233
Msa0010580	AT5G66620.2	41.038	212	106	6	54	260	222	419	1.37e-47	165

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Find 160 sgRNAs with CRISPR-Local

Find 504 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCAGTTAGGACTAGG+AGG	0.621731	1_1:-16031648	None:intergenic
AAAATTGAAATAGTTTGGTT+TGG	0.392881	1_1:-16031932	None:intergenic
AAACCCATCTCCATAAACAG+GGG	0.693477	1_1:-16038198	None:intergenic
AAACGGAGGCTTGGGTACTT+TGG	0.438070	1_1:+16038375	Msa0010580:three_prime_UTR
AAAGGAAAGGGGTGTGTGTG+TGG	0.468682	1_1:-16031612	None:intergenic
AACTACCCGTCACCTTGATA+TGG	0.383599	1_1:-16038271	None:intergenic
AACTCATACCTGTACCCCAT+CGG	0.520543	1_1:-16033364	None:intergenic
AAGGAAAGGGGTGTGTGTGT+GGG	0.519406	1_1:-16031611	None:intergenic
AAGGACCCTTCACCATATCA+AGG	0.581020	1_1:+16038259	Msa0010580:three_prime_UTR
AATAATGCTGGTTCCAGAAT+GGG	0.483891	1_1:-16036015	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAAGAGGGTTTAGC+AGG	-	chr1_1:16032056-16032075	None:intergenic	30.0%
ATGTTGATGTTTATTTGTGC+AGG	+	chr1_1:16032233-16032252	Msa0010580:intron	30.0%
TGTTGATGTTTATTTGTGCA+GGG	+	chr1_1:16032234-16032253	Msa0010580:intron	30.0%
GATTATTGCATCTTCTTGAA+AGG	+	chr1_1:16032629-16032648	Msa0010580:intron	30.0%
CTGAGATTGAAGTTAAGTTA+TGG	+	chr1_1:16032690-16032709	Msa0010580:intron	30.0%
AAAGGAGAAATGGAAAAAAC+AGG	-	chr1_1:16032784-16032803	None:intergenic	30.0%
TTCGATGATAAAAGGAGAAA+TGG	-	chr1_1:16032794-16032813	None:intergenic	30.0%
GAAATTCAATAGTAAGCAAC+TGG	-	chr1_1:16032877-16032896	None:intergenic	30.0%
GGAATTTCTGCTTATATTGA+TGG	+	chr1_1:16033131-16033150	Msa0010580:intron	30.0%
CTTCTTCTAATTGTGATTTG+TGG	-	chr1_1:16033249-16033268	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	16031518	16038494	16031518	ID=Msa0010580;Name=Msa0010580
chr1_1	mRNA	16031518	16038494	16031518	ID=Msa0010580-mRNA-1;Parent=Msa0010580;Name=Msa0010580-mRNA-1;_AED=0.13;_eAED=0.13;_QI=523\|1\|1\|1\|0.63\|0.66\|12\|816\|260
chr1_1	exon	16031518	16031997	16031518	ID=Msa0010580-mRNA-1:exon:5804;Parent=Msa0010580-mRNA-1
chr1_1	exon	16032255	16032399	16032255	ID=Msa0010580-mRNA-1:exon:5805;Parent=Msa0010580-mRNA-1
chr1_1	exon	16032517	16032607	16032517	ID=Msa0010580-mRNA-1:exon:5806;Parent=Msa0010580-mRNA-1
chr1_1	exon	16033245	16033377	16033245	ID=Msa0010580-mRNA-1:exon:5807;Parent=Msa0010580-mRNA-1
chr1_1	exon	16035142	16035262	16035142	ID=Msa0010580-mRNA-1:exon:5808;Parent=Msa0010580-mRNA-1
chr1_1	exon	16035379	16035462	16035379	ID=Msa0010580-mRNA-1:exon:5809;Parent=Msa0010580-mRNA-1
chr1_1	exon	16035974	16036093	16035974	ID=Msa0010580-mRNA-1:exon:5810;Parent=Msa0010580-mRNA-1
chr1_1	exon	16036210	16036421	16036210	ID=Msa0010580-mRNA-1:exon:5811;Parent=Msa0010580-mRNA-1
chr1_1	exon	16036791	16036847	16036791	ID=Msa0010580-mRNA-1:exon:5812;Parent=Msa0010580-mRNA-1
chr1_1	exon	16037090	16037202	16037090	ID=Msa0010580-mRNA-1:exon:5813;Parent=Msa0010580-mRNA-1
chr1_1	exon	16037735	16037793	16037735	ID=Msa0010580-mRNA-1:exon:5814;Parent=Msa0010580-mRNA-1
chr1_1	exon	16037988	16038494	16037988	ID=Msa0010580-mRNA-1:exon:5815;Parent=Msa0010580-mRNA-1
chr1_1	five_prime_UTR	16031518	16031997	16031518	ID=Msa0010580-mRNA-1:five_prime_utr;Parent=Msa0010580-mRNA-1
chr1_1	five_prime_UTR	16032255	16032297	16032255	ID=Msa0010580-mRNA-1:five_prime_utr;Parent=Msa0010580-mRNA-1
chr1_1	CDS	16032298	16032399	16032298	ID=Msa0010580-mRNA-1:cds;Parent=Msa0010580-mRNA-1
chr1_1	CDS	16032517	16032607	16032517	ID=Msa0010580-mRNA-1:cds;Parent=Msa0010580-mRNA-1
chr1_1	CDS	16033245	16033377	16033245	ID=Msa0010580-mRNA-1:cds;Parent=Msa0010580-mRNA-1
chr1_1	CDS	16035142	16035262	16035142	ID=Msa0010580-mRNA-1:cds;Parent=Msa0010580-mRNA-1
chr1_1	CDS	16035379	16035462	16035379	ID=Msa0010580-mRNA-1:cds;Parent=Msa0010580-mRNA-1
chr1_1	CDS	16035974	16036093	16035974	ID=Msa0010580-mRNA-1:cds;Parent=Msa0010580-mRNA-1
chr1_1	CDS	16036210	16036341	16036210	ID=Msa0010580-mRNA-1:cds;Parent=Msa0010580-mRNA-1
chr1_1	three_prime_UTR	16036342	16036421	16036342	ID=Msa0010580-mRNA-1:three_prime_utr;Parent=Msa0010580-mRNA-1
chr1_1	three_prime_UTR	16036791	16036847	16036791	ID=Msa0010580-mRNA-1:three_prime_utr;Parent=Msa0010580-mRNA-1
chr1_1	three_prime_UTR	16037090	16037202	16037090	ID=Msa0010580-mRNA-1:three_prime_utr;Parent=Msa0010580-mRNA-1
chr1_1	three_prime_UTR	16037735	16037793	16037735	ID=Msa0010580-mRNA-1:three_prime_utr;Parent=Msa0010580-mRNA-1
chr1_1	three_prime_UTR	16037988	16038494	16037988	ID=Msa0010580-mRNA-1:three_prime_utr;Parent=Msa0010580-mRNA-1

Gene Sequence

>Msa0010580

ATGGGTTGGCTTAGTAGAATTTTTAAAGGGTCTGATCATAAGGTTTCTGAAGGGCATTATTATAAAGATGATTCGAGTTATTACTTGCCATCAACTTCAGGGGATGATTGGACTGAGAACGAGAATGAAGACATTGATCGTGCTATTGCGTTGTCTTTGGTAGAAGAAAATCAGAAAGTGAAAAATGTAAAAGACCACAAATCACAATTAGAAGAAGATGAACAACTTGCCAGAGCAATAGAAGAAAGTCTAAATTTGGAGTCACCTCCCAAACATGGAAATGATAACATGTATCAACCAATTCAGTATTTCCCGATGGGGTACAGGATATGTGCTGGCTGCAATACTGAGATTGGTTATGGCCGCTATCTAAATTGCTTGGGTGCATTCTGGCATCCTGAATGCTTCCGTTGCCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTTTCCACGTCTGGAAATTACCCTTTCCATAAAGCATGCTATAAGGAAAGCTACCATCCGAAATGTGATGTCTGCAAGCACTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACACCCATTCTGGAACCAGCATTATTGCCCTTCACATGAACATGATAACACTGCCCGCTGTTGTAGCTGTGAGCGAATGGAGCCACAAGGGACGGGATATATTGCCCATAAGGATGGAAGGAAGCTCTGCTTAGAGTGTCTCGATTCTGCTATCATGGATACTAATGAATGTCAGCCCCTTCATGCTGATATACTGAAGTTTATGAAAGCATAA

Protein sequence

>Msa0010580

MGWLSRIFKGSDHKVSEGHYYKDDSSYYLPSTSGDDWTENENEDIDRAIALSLVEENQKVKNVKDHKSQLEEDEQLARAIEESLNLESPPKHGNDNMYQPIQYFPMGYRICAGCNTEIGYGRYLNCLGAFWHPECFRCRACNLPISDYEFSTSGNYPFHKACYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWNQHYCPSHEHDNTARCCSCERMEPQGTGYIAHKDGRKLCLECLDSAIMDTNECQPLHADILKFMKA*