AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0146310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146310 MtrunA17_Chr1g0155301 95.735 422 9 2 1 413 1 422 0.0 836
Msa0146310 MtrunA17_Chr5g0404321 62.588 425 138 5 1 413 1 416 0.0 535
Msa0146310 MtrunA17_Chr8g0373001 60.613 424 144 5 1 413 1 412 1.71e-178 503
Msa0146310 MtrunA17_Chr2g0286441 58.743 366 141 4 55 413 31 393 1.24e-147 424
Msa0146310 MtrunA17_Chr1g0201891 49.227 453 168 9 1 413 1 431 3.84e-146 422
Msa0146310 MtrunA17_Chr2g0278511 51.020 441 174 9 1 413 1 427 6.38e-146 421
Msa0146310 MtrunA17_Chr1g0156151 86.017 236 18 2 1 233 1 224 2.56e-137 392
Msa0146310 MtrunA17_Chr1g0196071 50.868 403 181 6 20 413 8 402 1.83e-136 396
Msa0146310 MtrunA17_Chr2g0315641 49.860 357 158 4 57 413 36 371 6.58e-122 358
Msa0146310 MtrunA17_Chr8g0373361 47.857 420 180 11 1 406 11 405 1.40e-116 346
Msa0146310 MtrunA17_Chr2g0315651 45.205 365 174 10 52 413 26 367 3.90e-95 290
Msa0146310 MtrunA17_Chr8g0373331 41.707 410 169 9 1 404 1 346 6.42e-93 283
Msa0146310 MtrunA17_Chr8g0373341 38.293 410 156 13 1 403 1 320 3.03e-61 201
Msa0146310 MtrunA17_Chr8g0373351 36.559 372 133 10 53 410 9 291 4.53e-57 189
Msa0146310 MtrunA17_Chr3g0091401 45.833 96 45 2 108 203 11 99 4.31e-17 76.6
Msa0146310 MtrunA17_Chr2g0334041 28.223 287 128 15 143 412 134 359 1.66e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146310 AT1G47270.3 61.069 393 130 6 28 413 12 388 1.17e-165 470
Msa0146310 AT1G47270.2 58.937 414 141 7 7 413 21 412 1.38e-165 471
Msa0146310 AT1G47270.1 59.036 415 141 7 6 413 21 413 1.59e-165 471
Msa0146310 AT2G18280.2 55.635 417 157 6 1 413 1 393 1.78e-156 447
Msa0146310 AT2G18280.1 55.635 417 157 6 1 413 1 393 1.78e-156 447
Msa0146310 AT2G47900.2 51.074 419 186 4 1 413 1 406 5.16e-147 424
Msa0146310 AT2G47900.1 51.074 419 186 4 1 413 1 406 5.16e-147 424
Msa0146310 AT2G47900.3 50.952 420 186 5 1 413 1 407 2.53e-145 419
Msa0146310 AT1G25280.1 49.558 452 182 8 1 413 1 445 7.63e-142 412
Msa0146310 AT1G76900.2 48.608 467 174 8 1 413 1 455 3.80e-139 405
Msa0146310 AT1G76900.1 48.608 467 174 8 1 413 1 455 3.80e-139 405
Msa0146310 AT1G76900.3 48.608 467 174 8 1 413 1 455 3.80e-139 405
Msa0146310 AT1G43640.1 45.946 444 194 8 1 413 1 429 2.29e-127 374
Msa0146310 AT3G06380.1 51.220 369 167 5 50 413 20 380 1.27e-125 368
Msa0146310 AT5G18680.1 51.220 369 160 8 55 413 31 389 1.05e-120 356
Msa0146310 AT1G53320.1 47.970 394 183 6 23 413 5 379 1.58e-120 355
Msa0146310 AT1G43640.2 49.727 366 154 5 75 413 1 363 2.54e-118 349
Msa0146310 AT3G06380.2 51.370 292 130 4 126 413 5 288 1.18e-100 301
Msa0146310 AT5G18680.2 50.820 305 131 7 118 413 3 297 3.81e-97 293
Msa0146310 AT1G25280.3 51.311 267 94 4 183 413 1 267 3.74e-85 261
Msa0146310 AT1G25280.2 51.311 267 94 4 183 413 1 267 3.74e-85 261
Msa0146310 AT1G61940.2 52.874 87 41 0 66 152 1 87 2.06e-25 104
Msa0146310 AT1G61940.1 55.738 61 27 0 66 126 1 61 5.69e-15 74.7

Find 205 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATTGTTGCAGCTCTTTC+TGG 0.118767 1_4:-6005964 Msa0146310:intron
AAGCCAGAAGTTGTTGAATT+TGG 0.203153 1_4:-6005427 Msa0146310:CDS
GTGCCTCAGTTTGTAGATTA+TGG 0.216681 1_4:-6006593 Msa0146310:CDS
GTTCTGCAGCTGAAACATTT+TGG 0.237846 1_4:+6005248 None:intergenic
TTGAGGTTTGTGAAGATTAT+AGG 0.238744 1_4:+6007670 None:intergenic
TCTACCTCGCAAGAAGAAAA+AGG 0.256159 1_4:+6003708 Msa0146300:CDS
TAGGAGCAGTTCCTCCTTCT+TGG 0.256813 1_4:+6005503 None:intergenic
GGACAGAACAAAACTTAATT+TGG 0.258161 1_4:+6007816 None:intergenic
TTCAATGGGGACTTCATCTT+TGG 0.269120 1_4:-6003771 Msa0146310:three_prime_UTR
TTGTGTAATGCTAGCTGTTT+AGG 0.272202 1_4:-6004993 Msa0146310:three_prime_UTR
TCCTTCTTGGACTGAAGATA+TGG 0.272539 1_4:+6005516 None:intergenic
GTCTTTATCGTCGTGGTTGA+TGG 0.275216 1_4:-6004585 Msa0146310:three_prime_UTR
GAGCCAAATTCAACAACTTC+TGG 0.280199 1_4:+6005424 None:intergenic
ATTACCTGCTTCAGTGATAT+AGG 0.293400 1_4:+6006513 None:intergenic
AATAATTCACTCATGTTTCA+TGG 0.298043 1_4:+6004503 Msa0146300:CDS
AAGGGTCAATCTACATTCAT+AGG 0.298780 1_4:+6004345 Msa0146300:CDS
GATAAGTTGTGTATATTTGT+AGG 0.300528 1_4:+6006899 None:intergenic
TCTCTTTCTCTTTAGTTTGA+AGG 0.302700 1_4:-6003911 Msa0146310:three_prime_UTR
TGACATTGCACATAATAAAA+AGG 0.306400 1_4:-6004885 Msa0146310:three_prime_UTR
TGATGTTGTCAACACTTTCT+TGG 0.313117 1_4:-6004839 Msa0146310:three_prime_UTR
TGCTGCAACTTGCAACTTGA+TGG 0.318405 1_4:+6005670 None:intergenic
TCCACATATAGTTTATATCT+TGG 0.326644 1_4:-6006325 Msa0146310:CDS
CGCTCTAGGGCCGAAGGATA+TGG 0.340717 1_4:-6003585 Msa0146310:three_prime_UTR
CACTGAATTGGATTGTCTCT+TGG 0.352418 1_4:+6006373 None:intergenic
TCTAGAAAATGAGGAAATCT+TGG 0.369298 1_4:+6007544 None:intergenic
TTTGTCCAAGACATTGCCTT+TGG 0.372742 1_4:-6007622 Msa0146310:five_prime_UTR
ATCTTTGGTTCTGCTTCACT+TGG 0.374825 1_4:-6003756 Msa0146310:three_prime_UTR
CAGCCAACAGTTCGCCGTTA+TGG 0.376958 1_4:+6004662 Msa0146300:CDS
TTGGAAGTACTTGCTTCATA+TGG 0.387123 1_4:+6005641 None:intergenic
CAGCTAGCATTACACAAACT+TGG 0.390221 1_4:+6004999 None:intergenic
GTGAGAGTGGATGGAGGTTG+AGG 0.390805 1_4:+6007653 None:intergenic
CTCTTAATAAAACACTGAAT+TGG 0.391494 1_4:+6006361 None:intergenic
ATACTTACATTGGAAAGTTA+AGG 0.392067 1_4:-6005840 Msa0146310:intron
CTCTTCGGACTCAGTCTTGT+AGG 0.397966 1_4:-6004369 Msa0146310:three_prime_UTR
TTCATGCTCATTGTGGCAAT+TGG 0.398540 1_4:+6005465 None:intergenic
GTTGGTGCTGATAGTGATAT+TGG 0.400859 1_4:+6006741 None:intergenic
ATGTCTTGGACAAAACAAAA+AGG 0.404771 1_4:+6007631 None:intergenic
GGTTCTGCTTCACTTGGAAC+CGG 0.405060 1_4:-6003750 Msa0146310:three_prime_UTR
TTACCTGCTTCAGTGATATA+GGG 0.408155 1_4:+6006514 None:intergenic
CATTGCCTTTGGAGTATTTG+AGG 0.412801 1_4:-6007611 Msa0146310:five_prime_UTR
GGAAAGGCACCAATGCAAAA+AGG 0.413609 1_4:+6004170 Msa0146300:CDS
ACCAAGTTCACGATCTTAGA+TGG 0.416091 1_4:-6005718 Msa0146310:CDS
AGGAAATCTTGGAGAGAACT+TGG 0.419492 1_4:+6007555 None:intergenic
TGTGCCTGAAGAAGATGCTT+TGG 0.420059 1_4:-6004009 Msa0146310:three_prime_UTR
CATGCCAAAGCATCTTCTTC+AGG 0.430172 1_4:+6004005 Msa0146300:CDS
CATCATCATCAGAGAGTCAA+TGG 0.430216 1_4:-6006707 Msa0146310:CDS
TTTGTTCTGTCCATGTGGTT+TGG 0.430653 1_4:-6007805 Msa0146310:five_prime_UTR
ATCTCCTTGGACCTGGACCC+CGG 0.433688 1_4:+6003629 Msa0146300:CDS
GTGTGCTTAGAAAGATTCTC+TGG 0.434313 1_4:-6003813 Msa0146310:three_prime_UTR
AAGGGAAAAGGAAAATGAAA+AGG 0.436087 1_4:+6004148 Msa0146300:CDS
TGAGTTTCCAAAGGGGACTT+TGG 0.437954 1_4:-6003879 Msa0146310:three_prime_UTR
TGCAGTTGTTCATGCCATCT+TGG 0.442171 1_4:+6005352 None:intergenic
GATGATGATGATGGTGTTGT+TGG 0.443322 1_4:+6006723 None:intergenic
CCTTCTTGGACTGAAGATAT+GGG 0.443500 1_4:+6005517 None:intergenic
GTTGCTACTTTATAGTTAGC+AGG 0.444061 1_4:+6005610 None:intergenic
TTGTGTTGGATTATAGCTTA+AGG 0.446378 1_4:-6007924 Msa0146310:five_prime_UTR
GAGTATTGTGAGAGAGATGA+AGG 0.449992 1_4:-6006862 Msa0146310:CDS
ACCATCTAAGATCGTGAACT+TGG 0.451643 1_4:+6005717 None:intergenic
ATGTGGTTTGGTTGTAAAGA+AGG 0.456396 1_4:-6007793 Msa0146310:five_prime_UTR
GGGGTCCAGGTCCAAGGAGA+TGG 0.458939 1_4:-6003627 Msa0146310:three_prime_UTR
AAGGAGATGAAAGAGGGAAT+TGG 0.461217 1_4:-6006843 Msa0146310:CDS
AATAACACCAAAGTCCCCTT+TGG 0.463540 1_4:+6003872 Msa0146300:CDS
CATAACGGCGAACTGTTGGC+TGG 0.467257 1_4:-6004661 Msa0146310:three_prime_UTR
CTTTGGCATGTTGATTCGGT+TGG 0.469572 1_4:-6003992 Msa0146310:three_prime_UTR
TCGTGGTTGATGGTTTCTAC+AGG 0.474450 1_4:-6004575 Msa0146310:three_prime_UTR
GATATTGGTGAGGAACATTC+TGG 0.475287 1_4:+6006756 None:intergenic
TTTCCCTTTCCTCGCTCGAT+GGG 0.476396 1_4:-6004133 Msa0146310:three_prime_UTR
CGCTCTAGGGCCGAAGGAGA+TGG 0.477305 1_4:-6003543 Msa0146310:three_prime_UTR
TGTCACATCAATGCTCTCTT+CGG 0.477554 1_4:-6004384 Msa0146310:three_prime_UTR
GATGCTTTGGCATGTTGATT+CGG 0.479473 1_4:-6003996 Msa0146310:three_prime_UTR
CAATGGAACATGGTGAGGTC+GGG 0.480101 1_4:+6004447 Msa0146300:CDS
ATTGGATTGTCTCTTGGAGC+AGG 0.482570 1_4:+6006379 None:intergenic
TTACACAAACTTGGGCCTGC+AGG 0.483485 1_4:+6005008 None:intergenic
AGCATCGTCCACCATCTCCT+TGG 0.484267 1_4:+6003616 Msa0146300:CDS
GGGACGGGTTACAGTGGCTT+CGG 0.485242 1_4:-6005308 Msa0146310:CDS
AGGAACTGCTCCTACTCCTA+TGG 0.485778 1_4:-6005494 Msa0146310:CDS
GAGATGAAGGAGATGAAAGA+GGG 0.489271 1_4:-6006849 Msa0146310:CDS
GTGTTTGAATTTCAAGGGAC+GGG 0.490017 1_4:-6005323 Msa0146310:CDS
AGGAGTTATCATTCACAAGC+TGG 0.492801 1_4:+6005106 None:intergenic
TGTCCCATCGAGCGAGGAAA+GGG 0.494803 1_4:+6004130 Msa0146300:CDS
TCTGAATCAGATAAGAAAGA+AGG 0.496204 1_4:+6004326 Msa0146300:CDS
AACACTTTCTTGGTGGAAAG+TGG 0.497925 1_4:-6004829 Msa0146310:three_prime_UTR
AGTTGCAATATTTCTGTACA+AGG 0.499276 1_4:-6004771 Msa0146310:three_prime_UTR
ATCGAGCGAGGAAAGGGAAA+AGG 0.501898 1_4:+6004136 Msa0146300:CDS
AAGTTGCAAGTTGCAGCAAA+AGG 0.503666 1_4:-6005665 Msa0146310:CDS
TGATATGAGCAAACTTCTCT+TGG 0.505017 1_4:-6005941 Msa0146310:CDS
AGTGCAACCAACACAACCTA+TGG 0.506396 1_4:+6004238 Msa0146300:CDS
TGCTCCGGGGTCCAGGTCCA+AGG 0.507731 1_4:-6003633 Msa0146310:three_prime_UTR
TTATATCTTGGTCTAAGCCC+TGG 0.508714 1_4:-6006313 Msa0146310:intron
AGAGATGAAGGAGATGAAAG+AGG 0.511465 1_4:-6006850 Msa0146310:CDS
AGACACTTGAACAGTGTGGC+TGG 0.511733 1_4:-6006545 Msa0146310:CDS
GGAAGTGTAACTTGAACTCC+AGG 0.513147 1_4:-6004545 Msa0146310:three_prime_UTR
CACAAAGAGGGGAGGGAATG+TGG 0.514278 1_4:+6007582 None:intergenic
AGATTCTCTGGTTGTGACAC+GGG 0.514523 1_4:-6003801 Msa0146310:three_prime_UTR
TAGTTAGCAGGAGCAGCCCT+TGG 0.515473 1_4:+6005622 None:intergenic
ACTATTAGACATAATTCAAA+GGG 0.516941 1_4:-6006664 Msa0146310:CDS
ACCAAGATATAAACTATATG+TGG 0.517704 1_4:+6006324 None:intergenic
GGAACATGGTGAGGTCGGGC+AGG 0.517884 1_4:+6004451 Msa0146300:CDS
ATTGTACTCCGCATTCGCCT+TGG 0.518756 1_4:+6005550 None:intergenic
GGTGTTTGAATTTCAAGGGA+CGG 0.518832 1_4:-6005324 Msa0146310:CDS
AGGGAAAAGGAAAATGAAAA+GGG 0.518930 1_4:+6004149 Msa0146300:CDS
GAAGATGTCAGTGTCTGATC+CGG 0.520427 1_4:+6003731 Msa0146300:CDS
TTGTCCTCCATAGGTTGTGT+TGG 0.520819 1_4:-6004245 Msa0146310:three_prime_UTR
GATATCAAAGAAGATTTCAA+AGG 0.522974 1_4:+6005086 None:intergenic
ACTTCCTTTGAGTTTCCAAA+GGG 0.524701 1_4:-6003887 Msa0146310:three_prime_UTR
GCATTATCCACCATCTCCTT+CGG 0.525548 1_4:+6003533 Msa0146300:CDS
GCATCATCCACCATATCCTT+CGG 0.526033 1_4:+6003575 Msa0146300:CDS
TTATGGAGAGACATAACAAA+GGG 0.526760 1_4:-6006576 Msa0146310:CDS
ATACTCCAAAGGCAATGTCT+TGG 0.529963 1_4:+6007617 None:intergenic
AGCATTGATGTGACAACAGA+TGG 0.531129 1_4:+6004392 Msa0146300:CDS
AGAGCTAACAATACTTACAT+TGG 0.531671 1_4:-6005850 Msa0146310:CDS
TGGCAATTGGTAAATTCCAT+AGG 0.538026 1_4:+6005478 None:intergenic
GTCCACCATCTCCTTGGACC+TGG 0.539700 1_4:+6003622 Msa0146300:CDS
TCAATGGAACATGGTGAGGT+CGG 0.539979 1_4:+6004446 Msa0146300:CDS
TTCAGTGTCATAACACTGAC+TGG 0.540460 1_4:+6004272 Msa0146300:CDS
TACAAGAAATTATATGCTTG+AGG 0.541015 1_4:+6004935 None:intergenic
AACTTTCAAAACAAAGCTTG+TGG 0.541276 1_4:+6007712 None:intergenic
TTTCCCTATATCACTGAAGC+AGG 0.541444 1_4:-6006517 Msa0146310:intron
ATGTTGGTGTTTGAATTTCA+AGG 0.542716 1_4:-6005329 Msa0146310:CDS
TTGGTAAATTCCATAGGAGT+AGG 0.543440 1_4:+6005484 None:intergenic
TCAATCAATGAAAGAGACCC+TGG 0.549089 1_4:+6004527 Msa0146300:CDS
CGACCATAACGGCGAACTGT+TGG 0.551046 1_4:-6004665 Msa0146310:three_prime_UTR
CAATGAGGAAGAAGACTCAA+TGG 0.551065 1_4:+6004430 Msa0146300:CDS
AGACAAGAGTCTAGAAAATG+AGG 0.552127 1_4:+6007535 None:intergenic
AACTTCCTTTGAGTTTCCAA+AGG 0.552524 1_4:-6003888 Msa0146310:three_prime_UTR
TACTATTAGACATAATTCAA+AGG 0.554134 1_4:-6006665 Msa0146310:CDS
AGCTAGCATTACACAAACTT+GGG 0.554445 1_4:+6005000 None:intergenic
TACACAAACTTGGGCCTGCA+GGG 0.554604 1_4:+6005009 None:intergenic
ATATGAAGCAAGTACTTCCA+AGG 0.555692 1_4:-6005639 Msa0146310:CDS
TGTTGTCAACACTTTCTTGG+TGG 0.557651 1_4:-6004836 Msa0146310:three_prime_UTR
GGACTGAGTTTAACATTAGT+CGG 0.558841 1_4:+6004621 Msa0146300:CDS
GTCCAGGTCCAAGGAGATGG+TGG 0.560062 1_4:-6003624 Msa0146310:three_prime_UTR
ATTATGTCTAATAGTAACTC+AGG 0.562516 1_4:+6006672 None:intergenic
TGTTGGTGTTTGAATTTCAA+GGG 0.562671 1_4:-6005328 Msa0146310:CDS
TTGTCCCATCGAGCGAGGAA+AGG 0.563695 1_4:+6004129 Msa0146300:CDS
ATCATCATCAGAGAGTCAAT+GGG 0.565599 1_4:-6006706 Msa0146310:CDS
GAACTTGGAAAGCACAAAGA+GGG 0.569713 1_4:+6007570 None:intergenic
CAATATCTTGCATGGTAGTG+TGG 0.570310 1_4:+6007944 None:intergenic
TATGGTCGCAAGTTCAGTTG+TGG 0.571661 1_4:+6004680 Msa0146300:CDS
AAAGGAAAATGAAAAGGGAA+AGG 0.572297 1_4:+6004154 Msa0146300:CDS
CTGAATCAGATAAGAAAGAA+GGG 0.574236 1_4:+6004327 Msa0146300:CDS
TTTCCACATCAAACTCTAGT+GGG 0.574624 1_4:+6004084 Msa0146300:CDS
TACCATGCAAGATATTGTGT+TGG 0.578066 1_4:-6007938 Msa0146310:five_prime_UTR
AGGGTCAATCTACATTCATA+GGG 0.579017 1_4:+6004346 Msa0146300:CDS
AACTGAACTTGCGACCATAA+CGG 0.579458 1_4:-6004676 Msa0146310:three_prime_UTR
GCTACAAGTGCTCGGCGAGA+TGG 0.582646 1_4:+6006618 None:intergenic
TTGCAGATTCATGCTCATTG+TGG 0.583392 1_4:+6005458 None:intergenic
TCTCTCACAATACTCTTGAA+AGG 0.583510 1_4:+6006870 None:intergenic
AAGATTCTCTGGTTGTGACA+CGG 0.584236 1_4:-6003802 Msa0146310:three_prime_UTR
CCCATATCTTCAGTCCAAGA+AGG 0.587259 1_4:-6005517 Msa0146310:CDS
TTCTTTACAACCAAACCACA+TGG 0.588770 1_4:+6007795 None:intergenic
TTTCCCACTAGAGTTTGATG+TGG 0.593804 1_4:-6004087 Msa0146310:three_prime_UTR
CTCAATGTTCTTCGTACGAG+AGG 0.595127 1_4:-6005574 Msa0146310:CDS
AAGAATTGTCCCATCGAGCG+AGG 0.597091 1_4:+6004124 Msa0146300:CDS
ATCCAACACAATATCTTGCA+TGG 0.599048 1_4:+6007936 None:intergenic
GGCATGAACAACTGCAATGT+TGG 0.599403 1_4:-6005345 Msa0146310:CDS
GAGAGGATATCGATAATCCA+TGG 0.599763 1_4:+6005177 None:intergenic
CTTCTTGGACTGAAGATATG+GGG 0.599973 1_4:+6005518 None:intergenic
CGAGAGGTCCAAGGCGAATG+CGG 0.601851 1_4:-6005558 Msa0146310:CDS
AGCATCTTCTTCAGGCACAA+AGG 0.605435 1_4:+6004013 Msa0146300:CDS
ATAAAGACACTCACAATCGC+AGG 0.606983 1_4:+6004600 Msa0146300:CDS
ACAAAGGATAAGAAGCATCA+TGG 0.606998 1_4:+6004029 Msa0146300:CDS
ATTAGACATAATTCAAAGGG+TGG 0.608482 1_4:-6006661 Msa0146310:CDS
TGGAAAGCACAAAGAGGGGA+GGG 0.611473 1_4:+6007575 None:intergenic
GATTCTCTGGTTGTGACACG+GGG 0.616837 1_4:-6003800 Msa0146310:three_prime_UTR
TTCTTCGTACGAGAGGTCCA+AGG 0.616949 1_4:-6005567 Msa0146310:CDS
ACTAAGCATATGCATAGACA+TGG 0.617362 1_4:-6006795 Msa0146310:CDS
AGTCCCCTTTGGAAACTCAA+AGG 0.618613 1_4:+6003883 Msa0146300:CDS
ACACTGACTGGTGACAATAG+AGG 0.621058 1_4:+6004284 Msa0146300:CDS
AAGTACCTCAAATACTCCAA+AGG 0.627238 1_4:+6007606 None:intergenic
AGAGGAGCAACAATGCATGT+TGG 0.629716 1_4:+6004302 Msa0146300:CDS
GCTGCTCAAACAGATTGCAA+AGG 0.630739 1_4:+6005141 None:intergenic
GCAACCAACACAACCTATGG+AGG 0.633233 1_4:+6004241 Msa0146300:CDS
AGGCAAGTGATAAAAGTGCA+AGG 0.635649 1_4:-6007904 Msa0146310:five_prime_UTR
TGTGGTTTGGTTGTAAAGAA+GGG 0.635990 1_4:-6007792 Msa0146310:five_prime_UTR
ATTGGCAACATGTATAGAAG+AGG 0.636703 1_4:-6006825 Msa0146310:CDS
CGGGAAGGACATATTCACCA+TGG 0.637363 1_4:-6005194 Msa0146310:CDS
TGGAAGCTAGTGAAACCACT+TGG 0.639315 1_4:-6006641 Msa0146310:CDS
TTTCAAGGGACGGGTTACAG+TGG 0.641025 1_4:-6005314 Msa0146310:CDS
CTAACCATGAAGAAAACACT+CGG 0.642497 1_4:+6003676 Msa0146300:CDS
AGACTCAATGGAACATGGTG+AGG 0.644780 1_4:+6004442 Msa0146300:CDS
AGGCACAAGCTACAAGTGCT+CGG 0.645228 1_4:+6006610 None:intergenic
AGAACTTGGAAAGCACAAAG+AGG 0.645315 1_4:+6007569 None:intergenic
AACTTGGAAAGCACAAAGAG+GGG 0.645714 1_4:+6007571 None:intergenic
TATGAAGCAAGTACTTCCAA+GGG 0.646074 1_4:-6005638 Msa0146310:CDS
TTGGAAAGCACAAAGAGGGG+AGG 0.646454 1_4:+6007574 None:intergenic
GAAGAAGACTCAATGGAACA+TGG 0.649274 1_4:+6004437 Msa0146300:CDS
TCTAGGGCCGAAGGAGATGG+TGG 0.656152 1_4:-6003540 Msa0146310:three_prime_UTR
TCTAGGGCCGAAGGATATGG+TGG 0.657238 1_4:-6003582 Msa0146310:three_prime_UTR
TGTGAGTGTCTTTATCGTCG+TGG 0.661271 1_4:-6004592 Msa0146310:three_prime_UTR
GATGTGACAACAGATGGAGA+AGG 0.661909 1_4:+6004398 Msa0146300:CDS
ATGTCTAATAGTAACTCAGG+AGG 0.663267 1_4:+6006675 None:intergenic
AAGGCTTGAAAAGCAGAGAG+AGG 0.664732 1_4:+6005160 None:intergenic
ATTATGGAGAGACATAACAA+AGG 0.674047 1_4:-6006577 Msa0146310:CDS
ATATCTTCAGTCCAAGAAGG+AGG 0.675556 1_4:-6005514 Msa0146310:CDS
TCTCCATAATCTACAAACTG+AGG 0.678466 1_4:+6006590 None:intergenic
TGCTCGGCGAGATGGCCAAG+TGG 0.681754 1_4:+6006626 None:intergenic
CTTCCTTTGAGTTTCCAAAG+GGG 0.694307 1_4:-6003886 Msa0146310:three_prime_UTR
AGAAGGAAACACTAACAATG+AGG 0.700109 1_4:+6004415 Msa0146300:CDS
TGCTGATAGTGATATTGGTG+AGG 0.701371 1_4:+6006746 None:intergenic
GATGGAAGCGAAGAAACATG+TGG 0.713919 1_4:+6005688 None:intergenic
AGGTTGTGTTGGTTGCACTG+AGG 0.746719 1_4:-6004234 Msa0146310:three_prime_UTR
GAAGTGTAACTTGAACTCCA+GGG 0.753989 1_4:-6004544 Msa0146310:three_prime_UTR
GGAAGCGAAGAAACATGTGG+AGG 0.757377 1_4:+6005691 None:intergenic
GTTAAGACACTTGAACAGTG+TGG 0.757990 1_4:-6006549 Msa0146310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAAATTCATATTAGATTA+AGG - chr1_4:6004021-6004040 Msa0146310:three_prime_UTR 15.0%
!!! TTTTGTAATAAATATTGTGA+TGG + chr1_4:6004067-6004086 Msa0146300:CDS 15.0%
!! ATCACAATATTTATTACAAA+AGG - chr1_4:6004066-6004085 Msa0146310:three_prime_UTR 15.0%
!! TCACAATATTTATTACAAAA+GGG - chr1_4:6004067-6004086 Msa0146310:three_prime_UTR 15.0%
!!! TTTTCTTTCACTTCTTTTTT+TGG - chr1_4:6003988-6004007 Msa0146310:three_prime_UTR 20.0%
!! GATATAGCAGTAAAAAAATA+AGG - chr1_4:6004089-6004108 Msa0146310:three_prime_UTR 20.0%
!!! AACTGCCTTAATTATTTTTT+GGG + chr1_4:6004284-6004303 Msa0146300:CDS 20.0%
!!! AAACTGCCTTAATTATTTTT+TGG + chr1_4:6004285-6004304 Msa0146300:CDS 20.0%
!!! TTTTTTGAGGGAAATAATTA+AGG - chr1_4:6004309-6004328 Msa0146310:three_prime_UTR 20.0%
!!! TTTTTCTTGTTCCTTTTTAT+AGG + chr1_4:6004358-6004377 Msa0146300:CDS 20.0%
!! TACTATTAGACATAATTCAA+AGG - chr1_4:6004801-6004820 Msa0146310:three_prime_UTR 20.0%
!! ACTATTAGACATAATTCAAA+GGG - chr1_4:6004802-6004821 Msa0146310:three_prime_UTR 20.0%
!!! TGTAATTTTTGTTTTAAGCT+TGG - chr1_4:6005007-6005026 Msa0146310:three_prime_UTR 20.0%
!! ACATGAAATTATTCTCTATT+TGG - chr1_4:6005192-6005211 Msa0146310:CDS 20.0%
!!! TTTGGTAACAAAATTTTGTT+TGG - chr1_4:6005210-6005229 Msa0146310:CDS 20.0%
!! AAAAAAAAAAGCCTAAAAGA+AGG + chr1_4:6005306-6005325 None:intergenic 20.0%
!!! TTTTTTTAGTCTTTGAACTA+TGG - chr1_4:6005413-6005432 Msa0146310:CDS 20.0%
!!! CACAGAATTTTTAATATCAT+TGG - chr1_4:6005576-6005595 Msa0146310:CDS 20.0%
!! TAATCATTAAGCAAAATAAC+AGG - chr1_4:6005710-6005729 Msa0146310:CDS 20.0%
!! GAAAAAGTTATACTACAATT+TGG - chr1_4:6006243-6006262 Msa0146310:intron 20.0%
!! ATACTACAATTTGGAAAAAT+CGG - chr1_4:6006252-6006271 Msa0146310:intron 20.0%
!!! TTTTGTGTTTCTTACTTTTT+TGG - chr1_4:6007517-6007536 Msa0146310:intron 20.0%
! CAAGACCCAAAAAATAATTA+AGG - chr1_4:6004276-6004295 Msa0146310:three_prime_UTR 25.0%
!!! AGGCAGTTTTTTTTTTTTTG+AGG - chr1_4:6004296-6004315 Msa0146310:three_prime_UTR 25.0%
!!! GGCAGTTTTTTTTTTTTTGA+GGG - chr1_4:6004297-6004316 Msa0146310:three_prime_UTR 25.0%
! GATAAGTTGTGTATATTTGT+AGG + chr1_4:6004570-6004589 Msa0146300:CDS 25.0%
! ATTATGTCTAATAGTAACTC+AGG + chr1_4:6004797-6004816 None:intergenic 25.0%
! CTCTTAATAAAACACTGAAT+TGG + chr1_4:6005108-6005127 None:intergenic 25.0%
! TCCACATATAGTTTATATCT+TGG - chr1_4:6005141-6005160 Msa0146310:CDS 25.0%
! ACCAAGATATAAACTATATG+TGG + chr1_4:6005145-6005164 None:intergenic 25.0%
!! AACTTGAATTACCTTCTTTT+AGG - chr1_4:6005292-6005311 Msa0146310:CDS 25.0%
!!! ATTGATTTGTAAGTTTACTC+TGG + chr1_4:6005362-6005381 None:intergenic 25.0%
! GTTCAAAGACTAAAAAAAGA+AGG + chr1_4:6005411-6005430 None:intergenic 25.0%
! ATACTTACATTGGAAAGTTA+AGG - chr1_4:6005626-6005645 Msa0146310:CDS 25.0%
!! AATAACAGGTCTAATTTTCT+CGG - chr1_4:6005724-6005743 Msa0146310:CDS 25.0%
! TACTACAATTTGGAAAAATC+GGG - chr1_4:6006253-6006272 Msa0146310:intron 25.0%
! GATATCAAAGAAGATTTCAA+AGG + chr1_4:6006383-6006402 None:intergenic 25.0%
! TACAAGAAATTATATGCTTG+AGG + chr1_4:6006534-6006553 None:intergenic 25.0%
! TGACATTGCACATAATAAAA+AGG - chr1_4:6006581-6006600 Msa0146310:CDS 25.0%
!!! TGTATTTTTATGGTGTACAA+GGG - chr1_4:6006718-6006737 Msa0146310:CDS 25.0%
! AATAATTCACTCATGTTTCA+TGG + chr1_4:6006966-6006985 None:intergenic 25.0%
! CACAAAAACAAAATTAGATG+AGG + chr1_4:6007636-6007655 None:intergenic 25.0%
TTGTGTTGGATTATAGCTTA+AGG - chr1_4:6003542-6003561 Msa0146310:three_prime_UTR 30.0%
GGACAGAACAAAACTTAATT+TGG + chr1_4:6003653-6003672 Msa0146300:CDS 30.0%
AACTTTCAAAACAAAGCTTG+TGG + chr1_4:6003757-6003776 Msa0146300:CDS 30.0%
TTGAGGTTTGTGAAGATTAT+AGG + chr1_4:6003799-6003818 Msa0146300:CDS 30.0%
ATGTCTTGGACAAAACAAAA+AGG + chr1_4:6003838-6003857 Msa0146300:CDS 30.0%
TCTAGAAAATGAGGAAATCT+TGG + chr1_4:6003925-6003944 Msa0146300:CDS 30.0%
AGAAAAGCTCAAAAATTGAG+AGG + chr1_4:6003974-6003993 Msa0146300:CDS 30.0%
!! GCAGTTGAAAATTTTGAAAG+AGG - chr1_4:6004331-6004350 Msa0146310:three_prime_UTR 30.0%
TTGAAAGAGGTCCTATAAAA+AGG - chr1_4:6004344-6004363 Msa0146310:three_prime_UTR 30.0%
ACACTAACTACATTGAACTT+AGG - chr1_4:6004453-6004472 Msa0146310:three_prime_UTR 30.0%
GTGTTTGAAAGAGAGAAATT+AGG + chr1_4:6004524-6004543 Msa0146300:CDS 30.0%
TTTCTCTCTTTCAAACACAA+TGG - chr1_4:6004526-6004545 Msa0146310:three_prime_UTR 30.0%
ATTAGACATAATTCAAAGGG+TGG - chr1_4:6004805-6004824 Msa0146310:three_prime_UTR 30.0%
ATTATGGAGAGACATAACAA+AGG - chr1_4:6004889-6004908 Msa0146310:three_prime_UTR 30.0%
TTATGGAGAGACATAACAAA+GGG - chr1_4:6004890-6004909 Msa0146310:three_prime_UTR 30.0%
!! AGTGTTTTATTAAGAGAGAG+AGG - chr1_4:6005112-6005131 Msa0146310:exon 30.0%
!! GTGTTTTATTAAGAGAGAGA+GGG - chr1_4:6005113-6005132 Msa0146310:exon 30.0%
CACAAATCGAGAATAGTTAA+CGG + chr1_4:6005455-6005474 None:intergenic 30.0%
! TAACTATTCTCGATTTGTGA+AGG - chr1_4:6005456-6005475 Msa0146310:CDS 30.0%
AGAGCTAACAATACTTACAT+TGG - chr1_4:6005616-6005635 Msa0146310:CDS 30.0%
! AATCAATCCACATCTTTTCA+TGG - chr1_4:6005660-6005679 Msa0146310:CDS 30.0%
!!! GCTTTGTTTTTCAAAATCAG+AGG + chr1_4:6006093-6006112 None:intergenic 30.0%
! ATGTTGGTGTTTGAATTTCA+AGG - chr1_4:6006137-6006156 Msa0146310:intron 30.0%
! TGTTGGTGTTTGAATTTCAA+GGG - chr1_4:6006138-6006157 Msa0146310:intron 30.0%
! AGTTGCAATATTTCTGTACA+AGG - chr1_4:6006695-6006714 Msa0146310:CDS 30.0%
!! CTGTACAAGGTGTATTTTTA+TGG - chr1_4:6006708-6006727 Msa0146310:CDS 30.0%
!! GTGTATTTTTATGGTGTACA+AGG - chr1_4:6006717-6006736 Msa0146310:CDS 30.0%
CTGAATCAGATAAGAAAGAA+GGG + chr1_4:6007142-6007161 None:intergenic 30.0%
TCTGAATCAGATAAGAAAGA+AGG + chr1_4:6007143-6007162 None:intergenic 30.0%
! TCTTTGATACCTTTTTGCAT+TGG - chr1_4:6007287-6007306 Msa0146310:intron 30.0%
AAAGGAAAATGAAAAGGGAA+AGG + chr1_4:6007315-6007334 None:intergenic 30.0%
AGGGAAAAGGAAAATGAAAA+GGG + chr1_4:6007320-6007339 None:intergenic 30.0%
AAGGGAAAAGGAAAATGAAA+AGG + chr1_4:6007321-6007340 None:intergenic 30.0%
!! TCTCTTTCTCTTTAGTTTGA+AGG - chr1_4:6007555-6007574 Msa0146310:five_prime_UTR 30.0%
! GCAAAAAAATGAGGTGTTAA+AGG + chr1_4:6007816-6007835 None:intergenic 30.0%
TACCATGCAAGATATTGTGT+TGG - chr1_4:6003528-6003547 Msa0146310:three_prime_UTR 35.0%
ATCCAACACAATATCTTGCA+TGG + chr1_4:6003533-6003552 Msa0146300:CDS 35.0%
!!! TAAGTTTTGTTCTGTCCATG+TGG - chr1_4:6003656-6003675 Msa0146310:three_prime_UTR 35.0%
TTCTTTACAACCAAACCACA+TGG + chr1_4:6003674-6003693 Msa0146300:CDS 35.0%
!! ATGTGGTTTGGTTGTAAAGA+AGG - chr1_4:6003673-6003692 Msa0146310:three_prime_UTR 35.0%
!! TGTGGTTTGGTTGTAAAGAA+GGG - chr1_4:6003674-6003693 Msa0146310:three_prime_UTR 35.0%
ACAAAACAAAAAGGTGAGAG+TGG + chr1_4:6003829-6003848 Msa0146300:CDS 35.0%
AAGTACCTCAAATACTCCAA+AGG + chr1_4:6003863-6003882 Msa0146300:CDS 35.0%
AGACAAGAGTCTAGAAAATG+AGG + chr1_4:6003934-6003953 Msa0146300:CDS 35.0%
! TTTTCTAGACTCTTGTCTCA+CGG - chr1_4:6003936-6003955 Msa0146310:three_prime_UTR 35.0%
! CATTGATTACACAGCTTTCA+AGG - chr1_4:6004202-6004221 Msa0146310:three_prime_UTR 35.0%
AGAAAAATCTCAAGAGAAGC+AGG - chr1_4:6004371-6004390 Msa0146310:three_prime_UTR 35.0%
TCTCTCACAATACTCTTGAA+AGG + chr1_4:6004599-6004618 Msa0146300:CDS 35.0%
ATTGGCAACATGTATAGAAG+AGG - chr1_4:6004641-6004660 Msa0146310:three_prime_UTR 35.0%
ACTAAGCATATGCATAGACA+TGG - chr1_4:6004671-6004690 Msa0146310:three_prime_UTR 35.0%
ATCATCATCAGAGAGTCAAT+GGG - chr1_4:6004760-6004779 Msa0146310:three_prime_UTR 35.0%
ATGTCTAATAGTAACTCAGG+AGG + chr1_4:6004794-6004813 None:intergenic 35.0%
TCTCCATAATCTACAAACTG+AGG + chr1_4:6004879-6004898 None:intergenic 35.0%
TTACCTGCTTCAGTGATATA+GGG + chr1_4:6004955-6004974 None:intergenic 35.0%
ATTACCTGCTTCAGTGATAT+AGG + chr1_4:6004956-6004975 None:intergenic 35.0%
!! GTTTTAAGCTTGGAAGAACA+TGG - chr1_4:6005017-6005036 Msa0146310:three_prime_UTR 35.0%
GCTGCAACAATTCACAAATA+TGG + chr1_4:6005496-6005515 None:intergenic 35.0%
TGATATGAGCAAACTTCTCT+TGG - chr1_4:6005525-6005544 Msa0146310:CDS 35.0%
! GAAAAGATGTGGATTGATTG+AGG + chr1_4:6005659-6005678 None:intergenic 35.0%
GCATTAACCATGAAAAGATG+TGG + chr1_4:6005670-6005689 None:intergenic 35.0%
!! TTGGAAGTACTTGCTTCATA+TGG + chr1_4:6005828-6005847 None:intergenic 35.0%
ATATGAAGCAAGTACTTCCA+AGG - chr1_4:6005827-6005846 Msa0146310:intron 35.0%
TATGAAGCAAGTACTTCCAA+GGG - chr1_4:6005828-6005847 Msa0146310:intron 35.0%
!! GTTGCTACTTTATAGTTAGC+AGG + chr1_4:6005859-6005878 None:intergenic 35.0%
TTGGTAAATTCCATAGGAGT+AGG + chr1_4:6005985-6006004 None:intergenic 35.0%
TGGCAATTGGTAAATTCCAT+AGG + chr1_4:6005991-6006010 None:intergenic 35.0%
AAGCCAGAAGTTGTTGAATT+TGG - chr1_4:6006039-6006058 Msa0146310:intron 35.0%
! TGAAAAACAAAGCACCAAGA+TGG - chr1_4:6006100-6006119 Msa0146310:intron 35.0%
ACAATTTGGAAAAATCGGGA+AGG - chr1_4:6006257-6006276 Msa0146310:intron 35.0%
AGCTAGCATTACACAAACTT+GGG + chr1_4:6006469-6006488 None:intergenic 35.0%
TTGTGTAATGCTAGCTGTTT+AGG - chr1_4:6006473-6006492 Msa0146310:intron 35.0%
TGATGTTGTCAACACTTTCT+TGG - chr1_4:6006627-6006646 Msa0146310:CDS 35.0%
GGACTGAGTTTAACATTAGT+CGG + chr1_4:6006848-6006867 None:intergenic 35.0%
AGAAGGAAACACTAACAATG+AGG + chr1_4:6007054-6007073 None:intergenic 35.0%
AGGGTCAATCTACATTCATA+GGG + chr1_4:6007123-6007142 None:intergenic 35.0%
AAGGGTCAATCTACATTCAT+AGG + chr1_4:6007124-6007143 None:intergenic 35.0%
!!! CTGAATTTTTTGTCCTCCAT+AGG - chr1_4:6007212-6007231 Msa0146310:intron 35.0%
TTTCCACATCAAACTCTAGT+GGG + chr1_4:6007385-6007404 None:intergenic 35.0%
! TTTTCCACATCAAACTCTAG+TGG + chr1_4:6007386-6007405 None:intergenic 35.0%
!! ACAAAGGATAAGAAGCATCA+TGG + chr1_4:6007440-6007459 None:intergenic 35.0%
! AACTTCCTTTGAGTTTCCAA+AGG - chr1_4:6007578-6007597 Msa0146310:five_prime_UTR 35.0%
! ACTTCCTTTGAGTTTCCAAA+GGG - chr1_4:6007579-6007598 Msa0146310:five_prime_UTR 35.0%
CTAACCATGAAGAAAACACT+CGG + chr1_4:6007793-6007812 None:intergenic 35.0%
!!! AACACCTCATTTTTTTGCTC+CGG - chr1_4:6007818-6007837 Msa0146310:five_prime_UTR 35.0%
!!! ATGCTCATTTTTTCGCTCTA+GGG - chr1_4:6007868-6007887 Msa0146310:five_prime_UTR 35.0%
!!! ATGCTCATTTTTTCGCTCTA+GGG - chr1_4:6007868-6007887 Msa0146310:five_prime_UTR 35.0%
! CAATATCTTGCATGGTAGTG+TGG + chr1_4:6003525-6003544 Msa0146300:CDS 40.0%
! AGGCAAGTGATAAAAGTGCA+AGG - chr1_4:6003562-6003581 Msa0146310:three_prime_UTR 40.0%
TTTGTTCTGTCCATGTGGTT+TGG - chr1_4:6003661-6003680 Msa0146310:three_prime_UTR 40.0%
AACAAAAAGGTGAGAGTGGA+TGG + chr1_4:6003825-6003844 Msa0146300:CDS 40.0%
TTTGTCCAAGACATTGCCTT+TGG - chr1_4:6003844-6003863 Msa0146310:three_prime_UTR 40.0%
ATACTCCAAAGGCAATGTCT+TGG + chr1_4:6003852-6003871 Msa0146300:CDS 40.0%
!! CATTGCCTTTGGAGTATTTG+AGG - chr1_4:6003855-6003874 Msa0146310:three_prime_UTR 40.0%
! AACTTGGAAAGCACAAAGAG+GGG + chr1_4:6003898-6003917 Msa0146300:CDS 40.0%
! GAACTTGGAAAGCACAAAGA+GGG + chr1_4:6003899-6003918 Msa0146300:CDS 40.0%
! AGAACTTGGAAAGCACAAAG+AGG + chr1_4:6003900-6003919 Msa0146300:CDS 40.0%
AGGAAATCTTGGAGAGAACT+TGG + chr1_4:6003914-6003933 Msa0146300:CDS 40.0%
AAAATGTTAACGAGTGCCTC+CGG - chr1_4:6004112-6004131 Msa0146310:three_prime_UTR 40.0%
! GAGTATTGTGAGAGAGATGA+AGG - chr1_4:6004604-6004623 Msa0146310:three_prime_UTR 40.0%
AGAGATGAAGGAGATGAAAG+AGG - chr1_4:6004616-6004635 Msa0146310:three_prime_UTR 40.0%
GAGATGAAGGAGATGAAAGA+GGG - chr1_4:6004617-6004636 Msa0146310:three_prime_UTR 40.0%
AAGGAGATGAAAGAGGGAAT+TGG - chr1_4:6004623-6004642 Msa0146310:three_prime_UTR 40.0%
GATATTGGTGAGGAACATTC+TGG + chr1_4:6004713-6004732 None:intergenic 40.0%
! TGCTGATAGTGATATTGGTG+AGG + chr1_4:6004723-6004742 None:intergenic 40.0%
!! GTTGGTGCTGATAGTGATAT+TGG + chr1_4:6004728-6004747 None:intergenic 40.0%
!! GATGATGATGATGGTGTTGT+TGG + chr1_4:6004746-6004765 None:intergenic 40.0%
! CTCTCTGATGATGATGATGA+TGG + chr1_4:6004755-6004774 None:intergenic 40.0%
CATCATCATCAGAGAGTCAA+TGG - chr1_4:6004759-6004778 Msa0146310:three_prime_UTR 40.0%
GTGCCTCAGTTTGTAGATTA+TGG - chr1_4:6004873-6004892 Msa0146310:three_prime_UTR 40.0%
GTTAAGACACTTGAACAGTG+TGG - chr1_4:6004917-6004936 Msa0146310:three_prime_UTR 40.0%
TTTCCCTATATCACTGAAGC+AGG - chr1_4:6004949-6004968 Msa0146310:three_prime_UTR 40.0%
CACTGAATTGGATTGTCTCT+TGG + chr1_4:6005096-6005115 None:intergenic 40.0%
TTATATCTTGGTCTAAGCCC+TGG - chr1_4:6005153-6005172 Msa0146310:CDS 40.0%
TGAGCACAACAATCTTACCA+GGG + chr1_4:6005173-6005192 None:intergenic 40.0%
TGAATTGTTGCAGCTCTTTC+TGG - chr1_4:6005502-6005521 Msa0146310:CDS 40.0%
ACCAAGTTCACGATCTTAGA+TGG - chr1_4:6005748-6005767 Msa0146310:intron 40.0%
! ACCATCTAAGATCGTGAACT+TGG + chr1_4:6005752-6005771 None:intergenic 40.0%
AAGTTGCAAGTTGCAGCAAA+AGG - chr1_4:6005801-6005820 Msa0146310:intron 40.0%
CTTCTTGGACTGAAGATATG+GGG + chr1_4:6005951-6005970 None:intergenic 40.0%
CCTTCTTGGACTGAAGATAT+GGG + chr1_4:6005952-6005971 None:intergenic 40.0%
TCCTTCTTGGACTGAAGATA+TGG + chr1_4:6005953-6005972 None:intergenic 40.0%
ATATCTTCAGTCCAAGAAGG+AGG - chr1_4:6005952-6005971 Msa0146310:CDS 40.0%
TTCATGCTCATTGTGGCAAT+TGG + chr1_4:6006004-6006023 None:intergenic 40.0%
TTGCAGATTCATGCTCATTG+TGG + chr1_4:6006011-6006030 None:intergenic 40.0%
GAGCCAAATTCAACAACTTC+TGG + chr1_4:6006045-6006064 None:intergenic 40.0%
GGTGTTTGAATTTCAAGGGA+CGG - chr1_4:6006142-6006161 Msa0146310:intron 40.0%
GTGTTTGAATTTCAAGGGAC+GGG - chr1_4:6006143-6006162 Msa0146310:intron 40.0%
! GTTCTGCAGCTGAAACATTT+TGG + chr1_4:6006221-6006240 None:intergenic 40.0%
GAGAGGATATCGATAATCCA+TGG + chr1_4:6006292-6006311 None:intergenic 40.0%
AGGAGTTATCATTCACAAGC+TGG + chr1_4:6006363-6006382 None:intergenic 40.0%
CAGCTAGCATTACACAAACT+TGG + chr1_4:6006470-6006489 None:intergenic 40.0%
TGTTGTCAACACTTTCTTGG+TGG - chr1_4:6006630-6006649 Msa0146310:CDS 40.0%
AACACTTTCTTGGTGGAAAG+TGG - chr1_4:6006637-6006656 Msa0146310:CDS 40.0%
AACTGAACTTGCGACCATAA+CGG - chr1_4:6006790-6006809 Msa0146310:CDS 40.0%
ATAAAGACACTCACAATCGC+AGG + chr1_4:6006869-6006888 None:intergenic 40.0%
! ATGGTTTCTACAGGCTTTTG+TGG - chr1_4:6006900-6006919 Msa0146310:five_prime_UTR 40.0%
GAAGTGTAACTTGAACTCCA+GGG - chr1_4:6006922-6006941 Msa0146310:intron 40.0%
TCAATCAATGAAAGAGACCC+TGG + chr1_4:6006942-6006961 None:intergenic 40.0%
GAAGAAGACTCAATGGAACA+TGG + chr1_4:6007032-6007051 None:intergenic 40.0%
CAATGAGGAAGAAGACTCAA+TGG + chr1_4:6007039-6007058 None:intergenic 40.0%
!! AGCATTGATGTGACAACAGA+TGG + chr1_4:6007077-6007096 None:intergenic 40.0%
TGTCACATCAATGCTCTCTT+CGG - chr1_4:6007082-6007101 Msa0146310:intron 40.0%
TTCAGTGTCATAACACTGAC+TGG + chr1_4:6007197-6007216 None:intergenic 40.0%
TTTCCCACTAGAGTTTGATG+TGG - chr1_4:6007379-6007398 Msa0146310:intron 40.0%
! GATGCTTTGGCATGTTGATT+CGG - chr1_4:6007470-6007489 Msa0146310:intron 40.0%
! CTTCCTTTGAGTTTCCAAAG+GGG - chr1_4:6007580-6007599 Msa0146310:five_prime_UTR 40.0%
AATAACACCAAAGTCCCCTT+TGG + chr1_4:6007597-6007616 None:intergenic 40.0%
GTGTGCTTAGAAAGATTCTC+TGG - chr1_4:6007653-6007672 Msa0146310:five_prime_UTR 40.0%
AAGATTCTCTGGTTGTGACA+CGG - chr1_4:6007664-6007683 Msa0146310:five_prime_UTR 40.0%
! ACACGGGGATGATTTTCAAT+GGG - chr1_4:6007681-6007700 Msa0146310:five_prime_UTR 40.0%
TTCAATGGGGACTTCATCTT+TGG - chr1_4:6007695-6007714 Msa0146310:five_prime_UTR 40.0%
!! ATCTTTGGTTCTGCTTCACT+TGG - chr1_4:6007710-6007729 Msa0146310:five_prime_UTR 40.0%
CTACCTCGCAAGAAGAAAAA+GGG + chr1_4:6007760-6007779 None:intergenic 40.0%
TCTACCTCGCAAGAAGAAAA+AGG + chr1_4:6007761-6007780 None:intergenic 40.0%
! TATGCCGAGTGTTTTCTTCA+TGG - chr1_4:6007786-6007805 Msa0146310:five_prime_UTR 40.0%
!!! ACACCTCATTTTTTTGCTCC+GGG - chr1_4:6007819-6007838 Msa0146310:five_prime_UTR 40.0%
!!! GATGCTCATTTTTTCGCTCT+AGG - chr1_4:6007867-6007886 Msa0146310:five_prime_UTR 40.0%
!!! GATGCTCATTTTTTCGCTCT+AGG - chr1_4:6007867-6007886 Msa0146310:five_prime_UTR 40.0%
AAAAAGGTGAGAGTGGATGG+AGG + chr1_4:6003822-6003841 Msa0146300:CDS 45.0%
AAATGTTAACGAGTGCCTCC+GGG - chr1_4:6004113-6004132 Msa0146310:three_prime_UTR 45.0%
TGCTTCCTTAACTAGTGCCA+CGG - chr1_4:6004241-6004260 Msa0146310:three_prime_UTR 45.0%
TGGAAGCTAGTGAAACCACT+TGG - chr1_4:6004825-6004844 Msa0146310:three_prime_UTR 45.0%
ATTGGATTGTCTCTTGGAGC+AGG + chr1_4:6005090-6005109 None:intergenic 45.0%
GTGAGCACAACAATCTTACC+AGG + chr1_4:6005174-6005193 None:intergenic 45.0%
GATGGAAGCGAAGAAACATG+TGG + chr1_4:6005781-6005800 None:intergenic 45.0%
TGCTGCAACTTGCAACTTGA+TGG + chr1_4:6005799-6005818 None:intergenic 45.0%
CTCAATGTTCTTCGTACGAG+AGG - chr1_4:6005892-6005911 Msa0146310:CDS 45.0%
CCCATATCTTCAGTCCAAGA+AGG - chr1_4:6005949-6005968 Msa0146310:CDS 45.0%
TGCAGTTGTTCATGCCATCT+TGG + chr1_4:6006117-6006136 None:intergenic 45.0%
GGCATGAACAACTGCAATGT+TGG - chr1_4:6006121-6006140 Msa0146310:intron 45.0%
!!! GCAGCTGAAACATTTTGGCT+AGG + chr1_4:6006216-6006235 None:intergenic 45.0%
AAGGCTTGAAAAGCAGAGAG+AGG + chr1_4:6006309-6006328 None:intergenic 45.0%
GCTGCTCAAACAGATTGCAA+AGG + chr1_4:6006328-6006347 None:intergenic 45.0%
!! ACTCTCATTTTTCACCCTGC+AGG - chr1_4:6006443-6006462 Msa0146310:intron 45.0%
TATGGTCGCAAGTTCAGTTG+TGG + chr1_4:6006789-6006808 None:intergenic 45.0%
TGTGAGTGTCTTTATCGTCG+TGG - chr1_4:6006874-6006893 Msa0146310:CDS 45.0%
GTCTTTATCGTCGTGGTTGA+TGG - chr1_4:6006881-6006900 Msa0146310:exon 45.0%
!! TCGTGGTTGATGGTTTCTAC+AGG - chr1_4:6006891-6006910 Msa0146310:exon 45.0%
! GGAAGTGTAACTTGAACTCC+AGG - chr1_4:6006921-6006940 Msa0146310:intron 45.0%
TCAATGGAACATGGTGAGGT+CGG + chr1_4:6007023-6007042 None:intergenic 45.0%
AGACTCAATGGAACATGGTG+AGG + chr1_4:6007027-6007046 None:intergenic 45.0%
GATGTGACAACAGATGGAGA+AGG + chr1_4:6007071-6007090 None:intergenic 45.0%
AGAGGAGCAACAATGCATGT+TGG + chr1_4:6007167-6007186 None:intergenic 45.0%
! ACACTGACTGGTGACAATAG+AGG + chr1_4:6007185-6007204 None:intergenic 45.0%
TTGTCCTCCATAGGTTGTGT+TGG - chr1_4:6007221-6007240 Msa0146310:intron 45.0%
AGTGCAACCAACACAACCTA+TGG + chr1_4:6007231-6007250 None:intergenic 45.0%
!! GGAAAGGCACCAATGCAAAA+AGG + chr1_4:6007299-6007318 None:intergenic 45.0%
AGCATCTTCTTCAGGCACAA+AGG + chr1_4:6007456-6007475 None:intergenic 45.0%
TGTGCCTGAAGAAGATGCTT+TGG - chr1_4:6007457-6007476 Msa0146310:intron 45.0%
! CATGCCAAAGCATCTTCTTC+AGG + chr1_4:6007464-6007483 None:intergenic 45.0%
!! CTTTGGCATGTTGATTCGGT+TGG - chr1_4:6007474-6007493 Msa0146310:intron 45.0%
! AGTCCCCTTTGGAAACTCAA+AGG + chr1_4:6007586-6007605 None:intergenic 45.0%
TGAGTTTCCAAAGGGGACTT+TGG - chr1_4:6007587-6007606 Msa0146310:five_prime_UTR 45.0%
AGATTCTCTGGTTGTGACAC+GGG - chr1_4:6007665-6007684 Msa0146310:five_prime_UTR 45.0%
! GACACGGGGATGATTTTCAA+TGG - chr1_4:6007680-6007699 Msa0146310:five_prime_UTR 45.0%
! CACGGGGATGATTTTCAATG+GGG - chr1_4:6007682-6007701 Msa0146310:five_prime_UTR 45.0%
GAAGATGTCAGTGTCTGATC+CGG + chr1_4:6007738-6007757 None:intergenic 45.0%
! CTTCCCTTTTTCTTCTTGCG+AGG - chr1_4:6007754-6007773 Msa0146310:five_prime_UTR 45.0%
!!! CACCTCATTTTTTTGCTCCG+GGG - chr1_4:6007820-6007839 Msa0146310:five_prime_UTR 45.0%
GCATCATCCACCATATCCTT+CGG + chr1_4:6007894-6007913 None:intergenic 45.0%
GCATTATCCACCATCTCCTT+CGG + chr1_4:6007936-6007955 None:intergenic 45.0%
! TGGAAAGCACAAAGAGGGGA+GGG + chr1_4:6003894-6003913 Msa0146300:CDS 50.0%
! TTGGAAAGCACAAAGAGGGG+AGG + chr1_4:6003895-6003914 Msa0146300:CDS 50.0%
AATGTTAACGAGTGCCTCCG+GGG - chr1_4:6004114-6004133 Msa0146310:three_prime_UTR 50.0%
GCTTCCTTAACTAGTGCCAC+GGG - chr1_4:6004242-6004261 Msa0146310:three_prime_UTR 50.0%
CTTCCTTAACTAGTGCCACG+GGG - chr1_4:6004243-6004262 Msa0146310:three_prime_UTR 50.0%
AGGCACAAGCTACAAGTGCT+CGG + chr1_4:6004859-6004878 None:intergenic 50.0%
AGACACTTGAACAGTGTGGC+TGG - chr1_4:6004921-6004940 Msa0146310:three_prime_UTR 50.0%
GGAAGCGAAGAAACATGTGG+AGG + chr1_4:6005778-6005797 None:intergenic 50.0%
TTCTTCGTACGAGAGGTCCA+AGG - chr1_4:6005899-6005918 Msa0146310:CDS 50.0%
ATTGTACTCCGCATTCGCCT+TGG + chr1_4:6005919-6005938 None:intergenic 50.0%
TAGGAGCAGTTCCTCCTTCT+TGG + chr1_4:6005966-6005985 None:intergenic 50.0%
AGGAACTGCTCCTACTCCTA+TGG - chr1_4:6005972-6005991 Msa0146310:intron 50.0%
!! TTTCAAGGGACGGGTTACAG+TGG - chr1_4:6006152-6006171 Msa0146310:intron 50.0%
CGGGAAGGACATATTCACCA+TGG - chr1_4:6006272-6006291 Msa0146310:intron 50.0%
TACACAAACTTGGGCCTGCA+GGG + chr1_4:6006460-6006479 None:intergenic 50.0%
TTACACAAACTTGGGCCTGC+AGG + chr1_4:6006461-6006480 None:intergenic 50.0%
CAATGGAACATGGTGAGGTC+GGG + chr1_4:6007022-6007041 None:intergenic 50.0%
! CTCTTCGGACTCAGTCTTGT+AGG - chr1_4:6007097-6007116 Msa0146310:intron 50.0%
GCAACCAACACAACCTATGG+AGG + chr1_4:6007228-6007247 None:intergenic 50.0%
!! AGGTTGTGTTGGTTGCACTG+AGG - chr1_4:6007232-6007251 Msa0146310:intron 50.0%
ATCGAGCGAGGAAAGGGAAA+AGG + chr1_4:6007333-6007352 None:intergenic 50.0%
! TTTTCCCTTTCCTCGCTCGA+TGG - chr1_4:6007332-6007351 Msa0146310:intron 50.0%
TTTCCCTTTCCTCGCTCGAT+GGG - chr1_4:6007333-6007352 Msa0146310:intron 50.0%
AAGAATTGTCCCATCGAGCG+AGG + chr1_4:6007345-6007364 None:intergenic 50.0%
GATTCTCTGGTTGTGACACG+GGG - chr1_4:6007666-6007685 Msa0146310:five_prime_UTR 50.0%
GGTTCTGCTTCACTTGGAAC+CGG - chr1_4:6007716-6007735 Msa0146310:five_prime_UTR 50.0%
GACCCCGGAGCAAAAAAATG+AGG + chr1_4:6007825-6007844 None:intergenic 50.0%
!!! ATTTTTTTGCTCCGGGGTCC+AGG - chr1_4:6007826-6007845 Msa0146310:five_prime_UTR 50.0%
!!! TTTTTTCGCTCTAGGGCCGA+AGG - chr1_4:6007875-6007894 Msa0146310:five_prime_UTR 50.0%
!!! TTTTTTCGCTCTAGGGCCGA+AGG - chr1_4:6007875-6007894 Msa0146310:five_prime_UTR 50.0%
GTGAGAGTGGATGGAGGTTG+AGG + chr1_4:6003816-6003835 Msa0146300:CDS 55.0%
CACAAAGAGGGGAGGGAATG+TGG + chr1_4:6003887-6003906 Msa0146300:CDS 55.0%
AGCTTCCTTAACCAGTGCCC+CGG + chr1_4:6004134-6004153 Msa0146300:CDS 55.0%
TCTTGTTAACCAGTGCCCCG+TGG + chr1_4:6004261-6004280 Msa0146300:CDS 55.0%
TAGTTAGCAGGAGCAGCCCT+TGG + chr1_4:6005847-6005866 None:intergenic 55.0%
CGACCATAACGGCGAACTGT+TGG - chr1_4:6006801-6006820 Msa0146310:CDS 55.0%
CAGCCAACAGTTCGCCGTTA+TGG + chr1_4:6006807-6006826 None:intergenic 55.0%
CATAACGGCGAACTGTTGGC+TGG - chr1_4:6006805-6006824 Msa0146310:CDS 55.0%
TGTCCCATCGAGCGAGGAAA+GGG + chr1_4:6007339-6007358 None:intergenic 55.0%
TTGTCCCATCGAGCGAGGAA+AGG + chr1_4:6007340-6007359 None:intergenic 55.0%
AGCATCGTCCACCATCTCCT+TGG + chr1_4:6007853-6007872 None:intergenic 55.0%
! TCTAGGGCCGAAGGATATGG+TGG - chr1_4:6007884-6007903 Msa0146310:five_prime_UTR 55.0%
TTCCTTAACCAGTGCCCCGG+AGG + chr1_4:6004131-6004150 Msa0146300:CDS 60.0%
GTGCCCCGTGGCACTAGTTA+AGG + chr1_4:6004249-6004268 Msa0146300:CDS 60.0%
TAACTAGTGCCACGGGGCAC+TGG - chr1_4:6004249-6004268 Msa0146310:three_prime_UTR 60.0%
GCTACAAGTGCTCGGCGAGA+TGG + chr1_4:6004851-6004870 None:intergenic 60.0%
CGAGAGGTCCAAGGCGAATG+CGG - chr1_4:6005908-6005927 Msa0146310:CDS 60.0%
!! GGGACGGGTTACAGTGGCTT+CGG - chr1_4:6006158-6006177 Msa0146310:intron 60.0%
ATCTCCTTGGACCTGGACCC+CGG + chr1_4:6007840-6007859 None:intergenic 60.0%
GTCCAGGTCCAAGGAGATGG+TGG - chr1_4:6007842-6007861 Msa0146310:five_prime_UTR 60.0%
GTCCACCATCTCCTTGGACC+TGG + chr1_4:6007847-6007866 None:intergenic 60.0%
!! CGCTCTAGGGCCGAAGGATA+TGG - chr1_4:6007881-6007900 Msa0146310:five_prime_UTR 60.0%
! TCTAGGGCCGAAGGAGATGG+TGG - chr1_4:6007926-6007945 Msa0146310:five_prime_UTR 60.0%
!! TGCCTCCGGGGCACTGGTTA+AGG - chr1_4:6004126-6004145 Msa0146310:three_prime_UTR 65.0%
TGCTCGGCGAGATGGCCAAG+TGG + chr1_4:6004843-6004862 None:intergenic 65.0%
GGAACATGGTGAGGTCGGGC+AGG + chr1_4:6007018-6007037 None:intergenic 65.0%
GGGGTCCAGGTCCAAGGAGA+TGG - chr1_4:6007839-6007858 Msa0146310:five_prime_UTR 65.0%
!! CGCTCTAGGGCCGAAGGAGA+TGG - chr1_4:6007923-6007942 Msa0146310:five_prime_UTR 65.0%
AACGAGTGCCTCCGGGGCAC+TGG - chr1_4:6004120-6004139 Msa0146310:three_prime_UTR 70.0%
TGCTCCGGGGTCCAGGTCCA+AGG - chr1_4:6007833-6007852 Msa0146310:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 6003517 6007971 6003517 ID=Msa0146310;Name=Msa0146310
chr1_4 mRNA 6003517 6007971 6003517 ID=Msa0146310-mRNA-1;Parent=Msa0146310;Name=Msa0146310-mRNA-1;_AED=0.09;_eAED=0.09;_QI=476|1|1|1|0.75|0.6|5|1597|413
chr1_4 exon 6003517 6005756 6003517 ID=Msa0146310-mRNA-1:exon:2640;Parent=Msa0146310-mRNA-1
chr1_4 exon 6005841 6005973 6005841 ID=Msa0146310-mRNA-1:exon:2639;Parent=Msa0146310-mRNA-1
chr1_4 exon 6006314 6006401 6006314 ID=Msa0146310-mRNA-1:exon:2638;Parent=Msa0146310-mRNA-1
chr1_4 exon 6006518 6006930 6006518 ID=Msa0146310-mRNA-1:exon:2637;Parent=Msa0146310-mRNA-1
chr1_4 exon 6007531 6007971 6007531 ID=Msa0146310-mRNA-1:exon:2636;Parent=Msa0146310-mRNA-1
chr1_4 five_prime_UTR 6007531 6007971 6007531 ID=Msa0146310-mRNA-1:five_prime_utr;Parent=Msa0146310-mRNA-1
chr1_4 five_prime_UTR 6006896 6006930 6006896 ID=Msa0146310-mRNA-1:five_prime_utr;Parent=Msa0146310-mRNA-1
chr1_4 CDS 6006518 6006895 6006518 ID=Msa0146310-mRNA-1:cds;Parent=Msa0146310-mRNA-1
chr1_4 CDS 6006314 6006401 6006314 ID=Msa0146310-mRNA-1:cds;Parent=Msa0146310-mRNA-1
chr1_4 CDS 6005841 6005973 6005841 ID=Msa0146310-mRNA-1:cds;Parent=Msa0146310-mRNA-1
chr1_4 CDS 6005114 6005756 6005114 ID=Msa0146310-mRNA-1:cds;Parent=Msa0146310-mRNA-1
chr1_4 three_prime_UTR 6003517 6005113 6003517 ID=Msa0146310-mRNA-1:three_prime_utr;Parent=Msa0146310-mRNA-1
Gene Sequence

>Msa0146310

ATGCCTTTCAAGAGTATTGTGAGAGAGATGAAGGAGATGAAAGAGGGAATTGGCAACATGTATAGAAGAGGTGTAGAAACTAAGCATATGCATAGACATGGAAAATCTCACATAGCACCAGAATGTTCCTCACCAATATCACTATCAGCACCAACAACACCATCATCATCATCATCAGAGAGTCAATGGGCTAATTTACCTCCTGAGTTACTATTAGACATAATTCAAAGGGTGGAAGCTAGTGAAACCACTTGGCCATCTCGCCGAGCACTTGTAGCTTGTGCCTCAGTTTGTAGATTATGGAGAGACATAACAAAGGGTATTGTTAAGACACTTGAACAGTGTGGCTGGATCACTTTCCCTATATCACTGAAGCAGCCTGCTCCAAGAGACAATCCAATTCAGTGTTTTATTAAGAGAGAGAGGGCTACTTCCACATATAGTTTATATCTTGGTCTAAGCCCTGCTCTTTCTGGTGATATGAGCAAACTTCTCTTGGCAGCAAAGAAGATTAGAAGAGCAACATGCACAGAATTTTTAATATCATTGGTTTCTGATGATTTCTCTAGAGCTAACAATACTTACATTGGAAAGTTAAGGTCTAATTTTCTCGGCACCAAGTTCACGATCTTAGATGGTCATCCTCCACATGTTTCTTCGCTTCCATCAAGTTGCAAGTTGCAGCAAAAGGTCCATATGAAGCAAGTACTTCCAAGGGCTGCTCCTGCTAACTATAAAGTAGCAACTGTATCTTACGAACTCAATGTTCTTCGTACGAGAGGTCCAAGGCGAATGCGGAGTACAATGCACTTAATCCCCATATCTTCAGTCCAAGAAGGAGGAACTGCTCCTACTCCTATGGAATTTACCAATTGCCACAATGAGCATGAATCTGCAAAAGAAAAGAAGCCAGAAGTTGTTGAATTTGGCTCAACTTGCACTGATTTTGCAAGAGAGCCTCTGATTTTGAAAAACAAAGCACCAAGATGGCATGAACAACTGCAATGTTGGTGTTTGAATTTCAAGGGACGGGTTACAGTGGCTTCGGTGAAGAATTTTCAGCTTGTAGCAGTTGCAGAACCTAGCCAAAATGTTTCAGCTGCAGAACAAGAAAAAGTTATACTACAATTTGGAAAAATCGGGAAGGACATATTCACCATGGATTATCGATATCCTCTCTCTGCTTTTCAAGCCTTTGCAATCTGTTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA
Protein sequence

>Msa0146310

MPFKSIVREMKEMKEGIGNMYRRGVETKHMHRHGKSHIAPECSSPISLSAPTTPSSSSSESQWANLPPELLLDIIQRVEASETTWPSRRALVACASVCRLWRDITKGIVKTLEQCGWITFPISLKQPAPRDNPIQCFIKRERATSTYSLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVSDDFSRANNTYIGKLRSNFLGTKFTILDGHPPHVSSLPSSCKLQQKVHMKQVLPRAAPANYKVATVSYELNVLRTRGPRRMRSTMHLIPISSVQEGGTAPTPMEFTNCHNEHESAKEKKPEVVEFGSTCTDFAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAVAEPSQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE*