AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1374090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374090 MtrunA17_Chr1g0155301 95.735 422 9 2 1 413 1 422 0.0 836
Msa1374090 MtrunA17_Chr5g0404321 62.588 425 138 5 1 413 1 416 0.0 535
Msa1374090 MtrunA17_Chr8g0373001 60.613 424 144 5 1 413 1 412 1.71e-178 503
Msa1374090 MtrunA17_Chr2g0286441 58.743 366 141 4 55 413 31 393 1.24e-147 424
Msa1374090 MtrunA17_Chr1g0201891 49.227 453 168 9 1 413 1 431 3.84e-146 422
Msa1374090 MtrunA17_Chr2g0278511 51.020 441 174 9 1 413 1 427 6.38e-146 421
Msa1374090 MtrunA17_Chr1g0156151 86.017 236 18 2 1 233 1 224 2.56e-137 392
Msa1374090 MtrunA17_Chr1g0196071 50.868 403 181 6 20 413 8 402 1.83e-136 396
Msa1374090 MtrunA17_Chr2g0315641 49.860 357 158 4 57 413 36 371 6.58e-122 358
Msa1374090 MtrunA17_Chr8g0373361 47.857 420 180 11 1 406 11 405 1.40e-116 346
Msa1374090 MtrunA17_Chr2g0315651 45.205 365 174 10 52 413 26 367 3.90e-95 290
Msa1374090 MtrunA17_Chr8g0373331 41.707 410 169 9 1 404 1 346 6.42e-93 283
Msa1374090 MtrunA17_Chr8g0373341 38.293 410 156 13 1 403 1 320 3.03e-61 201
Msa1374090 MtrunA17_Chr8g0373351 36.559 372 133 10 53 410 9 291 4.53e-57 189
Msa1374090 MtrunA17_Chr3g0091401 45.833 96 45 2 108 203 11 99 4.31e-17 76.6
Msa1374090 MtrunA17_Chr2g0334041 28.223 287 128 15 143 412 134 359 1.66e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374090 AT1G47270.3 61.069 393 130 6 28 413 12 388 1.17e-165 470
Msa1374090 AT1G47270.2 58.937 414 141 7 7 413 21 412 1.38e-165 471
Msa1374090 AT1G47270.1 59.036 415 141 7 6 413 21 413 1.59e-165 471
Msa1374090 AT2G18280.2 55.635 417 157 6 1 413 1 393 1.78e-156 447
Msa1374090 AT2G18280.1 55.635 417 157 6 1 413 1 393 1.78e-156 447
Msa1374090 AT2G47900.2 51.074 419 186 4 1 413 1 406 5.16e-147 424
Msa1374090 AT2G47900.1 51.074 419 186 4 1 413 1 406 5.16e-147 424
Msa1374090 AT2G47900.3 50.952 420 186 5 1 413 1 407 2.53e-145 419
Msa1374090 AT1G25280.1 49.558 452 182 8 1 413 1 445 7.63e-142 412
Msa1374090 AT1G76900.2 48.608 467 174 8 1 413 1 455 3.80e-139 405
Msa1374090 AT1G76900.1 48.608 467 174 8 1 413 1 455 3.80e-139 405
Msa1374090 AT1G76900.3 48.608 467 174 8 1 413 1 455 3.80e-139 405
Msa1374090 AT1G43640.1 45.946 444 194 8 1 413 1 429 2.29e-127 374
Msa1374090 AT3G06380.1 51.220 369 167 5 50 413 20 380 1.27e-125 368
Msa1374090 AT5G18680.1 51.220 369 160 8 55 413 31 389 1.05e-120 356
Msa1374090 AT1G53320.1 47.970 394 183 6 23 413 5 379 1.58e-120 355
Msa1374090 AT1G43640.2 49.727 366 154 5 75 413 1 363 2.54e-118 349
Msa1374090 AT3G06380.2 51.370 292 130 4 126 413 5 288 1.18e-100 301
Msa1374090 AT5G18680.2 50.820 305 131 7 118 413 3 297 3.81e-97 293
Msa1374090 AT1G25280.3 51.311 267 94 4 183 413 1 267 3.74e-85 261
Msa1374090 AT1G25280.2 51.311 267 94 4 183 413 1 267 3.74e-85 261
Msa1374090 AT1G61940.2 52.874 87 41 0 66 152 1 87 2.06e-25 104
Msa1374090 AT1G61940.1 55.738 61 27 0 66 126 1 61 5.69e-15 74.7

Find 205 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGTATTTGCAGCTCTTTC+TGG 0.147891 tig0019465:-93642 Msa1374090:intron
AAGCCAGAAGTTGTTGAATT+TGG 0.203153 tig0019465:-93105 Msa1374090:CDS
GTGCCTCAGTTTGTAGATTA+TGG 0.216681 tig0019465:-94282 Msa1374090:CDS
GTTCTGCAGCTGAAACATTT+TGG 0.237846 tig0019465:+92926 None:intergenic
TTGAGGTTTGTGAAGATTAT+AGG 0.238744 tig0019465:+95359 None:intergenic
TCTACCTCGCAAGAAGAAAA+AGG 0.256159 tig0019465:+91386 Msa1374080:CDS
TAGGAGCAGTTCCTCCTTCT+TGG 0.256813 tig0019465:+93181 None:intergenic
GGACAGAACAAAACTTAATT+TGG 0.258161 tig0019465:+95505 None:intergenic
TTCAATGGGGACTTCATCTT+TGG 0.269120 tig0019465:-91449 Msa1374090:three_prime_UTR
TTGTGTAATGCTAGCTGTTT+AGG 0.272202 tig0019465:-92671 Msa1374090:three_prime_UTR
TCCTTCTTGGACTGAAGATA+TGG 0.272539 tig0019465:+93194 None:intergenic
GTCTTTATCGTCGTGGTTGA+TGG 0.275216 tig0019465:-92263 Msa1374090:three_prime_UTR
GAGCCAAATTCAACAACTTC+TGG 0.280199 tig0019465:+93102 None:intergenic
ATTACCTGCTTCAGTGATAT+AGG 0.293400 tig0019465:+94202 None:intergenic
AATAATTCACTCATGTTTCA+TGG 0.298043 tig0019465:+92181 Msa1374080:CDS
AAGGGTCAATCTACATTCAT+AGG 0.298780 tig0019465:+92023 Msa1374080:CDS
GATAAGTTGTGTATATTTGT+AGG 0.300528 tig0019465:+94588 None:intergenic
TCTCTTTCTCTTTAGTTTGA+AGG 0.302700 tig0019465:-91589 Msa1374090:three_prime_UTR
TGACATTGCACATAATAAAA+AGG 0.306400 tig0019465:-92563 Msa1374090:three_prime_UTR
TGATGTTGTCAACACTTTCT+TGG 0.313117 tig0019465:-92517 Msa1374090:three_prime_UTR
TGCTGCAACTTGCAACTTGA+TGG 0.318405 tig0019465:+93348 None:intergenic
TCCACATATAGTTTATATCT+TGG 0.326644 tig0019465:-94014 Msa1374090:CDS
CGCTCTAGGGCCGAAGGATA+TGG 0.340717 tig0019465:-91263 Msa1374090:three_prime_UTR
CACTGAATTGGATTGTCTCT+TGG 0.352418 tig0019465:+94062 None:intergenic
TCTAGAAAATGAGGAAATCT+TGG 0.369298 tig0019465:+95233 None:intergenic
TTTGTCCAAGACATTGCCTT+TGG 0.372742 tig0019465:-95311 Msa1374090:five_prime_UTR
ATCTTTGGTTCTGCTTCACT+TGG 0.374825 tig0019465:-91434 Msa1374090:three_prime_UTR
CAGCCAACAGTTCGCCGTTA+TGG 0.376958 tig0019465:+92340 Msa1374080:CDS
TTGGAAGTACTTGCTTCATA+TGG 0.387123 tig0019465:+93319 None:intergenic
CAGCTAGCATTACACAAACT+TGG 0.390221 tig0019465:+92677 None:intergenic
GTGAGAGTGGATGGAGGTTG+AGG 0.390805 tig0019465:+95342 None:intergenic
CTCTTAATAAAACACTGAAT+TGG 0.391494 tig0019465:+94050 None:intergenic
ATACTTACATTGGAAAGTTA+AGG 0.392067 tig0019465:-93518 Msa1374090:intron
CTCTTCGGACTCAGTCTTGT+AGG 0.397966 tig0019465:-92047 Msa1374090:three_prime_UTR
TTCATGCTCATTGTGGCAAT+TGG 0.398540 tig0019465:+93143 None:intergenic
GTTGGTGCTGATAGTGATAT+TGG 0.400859 tig0019465:+94430 None:intergenic
ATGTCTTGGACAAAACAAAA+AGG 0.404771 tig0019465:+95320 None:intergenic
GGTTCTGCTTCACTTGGAAC+CGG 0.405060 tig0019465:-91428 Msa1374090:three_prime_UTR
TTACCTGCTTCAGTGATATA+GGG 0.408155 tig0019465:+94203 None:intergenic
CATTGCCTTTGGAGTATTTG+AGG 0.412801 tig0019465:-95300 Msa1374090:five_prime_UTR
GGAAAGGCACCAATGCAAAA+AGG 0.413609 tig0019465:+91848 Msa1374080:CDS
ACCAAGTTCACGATCTTAGA+TGG 0.416091 tig0019465:-93396 Msa1374090:CDS
AGGAAATCTTGGAGAGAACT+TGG 0.419492 tig0019465:+95244 None:intergenic
TGTGCCTGAAGAAGATGCTT+TGG 0.420059 tig0019465:-91687 Msa1374090:three_prime_UTR
CATGCCAAAGCATCTTCTTC+AGG 0.430172 tig0019465:+91683 Msa1374080:CDS
CATCATCATCAGAGAGTCAA+TGG 0.430216 tig0019465:-94396 Msa1374090:CDS
TTTGTTCTGTCCATGTGGTT+TGG 0.430653 tig0019465:-95494 Msa1374090:five_prime_UTR
ATCTCCTTGGACCTGGACCC+CGG 0.433688 tig0019465:+91307 Msa1374080:CDS
GTGTGCTTAGAAAGATTCTC+TGG 0.434313 tig0019465:-91491 Msa1374090:three_prime_UTR
AAGGGAAAAGGAAAATGAAA+AGG 0.436087 tig0019465:+91826 Msa1374080:CDS
TGAGTTTCCAAAGGGGACTT+TGG 0.437954 tig0019465:-91557 Msa1374090:three_prime_UTR
TGCAGTTGTTCATGCCATCT+TGG 0.442171 tig0019465:+93030 None:intergenic
GATGATGATGATGGTGTTGT+TGG 0.443322 tig0019465:+94412 None:intergenic
CCTTCTTGGACTGAAGATAT+GGG 0.443500 tig0019465:+93195 None:intergenic
GTTGCTACTTTATAGTTAGC+AGG 0.444061 tig0019465:+93288 None:intergenic
TTGTGTTGGATTATAGCTTA+AGG 0.446378 tig0019465:-95613 Msa1374090:five_prime_UTR
GAGTATTGTGAGAGAGATGA+AGG 0.449992 tig0019465:-94551 Msa1374090:CDS
ACCATCTAAGATCGTGAACT+TGG 0.451643 tig0019465:+93395 None:intergenic
ATGTGGTTTGGTTGTAAAGA+AGG 0.456396 tig0019465:-95482 Msa1374090:five_prime_UTR
GGGGTCCAGGTCCAAGGAGA+TGG 0.458939 tig0019465:-91305 Msa1374090:three_prime_UTR
AAGGAGATGAAAGAGGGAAT+TGG 0.461217 tig0019465:-94532 Msa1374090:CDS
AATAACACCAAAGTCCCCTT+TGG 0.463540 tig0019465:+91550 Msa1374080:CDS
CATAACGGCGAACTGTTGGC+TGG 0.467257 tig0019465:-92339 Msa1374090:three_prime_UTR
CTTTGGCATGTTGATTCGGT+TGG 0.469572 tig0019465:-91670 Msa1374090:three_prime_UTR
TCGTGGTTGATGGTTTCTAC+AGG 0.474450 tig0019465:-92253 Msa1374090:three_prime_UTR
GATATTGGTGAGGAACATTC+TGG 0.475287 tig0019465:+94445 None:intergenic
TTTCCCTTTCCTCGCTCGAT+GGG 0.476396 tig0019465:-91811 Msa1374090:three_prime_UTR
CGCTCTAGGGCCGAAGGAGA+TGG 0.477305 tig0019465:-91221 Msa1374090:three_prime_UTR
TGTCACATCAATGCTCTCTT+CGG 0.477554 tig0019465:-92062 Msa1374090:three_prime_UTR
GATGCTTTGGCATGTTGATT+CGG 0.479473 tig0019465:-91674 Msa1374090:three_prime_UTR
CAATGGAACATGGTGAGGTC+GGG 0.480101 tig0019465:+92125 Msa1374080:CDS
ATTGGATTGTCTCTTGGAGC+AGG 0.482570 tig0019465:+94068 None:intergenic
TTACACAAACTTGGGCCTGC+AGG 0.483485 tig0019465:+92686 None:intergenic
AGCATCGTCCACCATCTCCT+TGG 0.484267 tig0019465:+91294 Msa1374080:CDS
GGGACGGGTTACAGTGGCTT+CGG 0.485242 tig0019465:-92986 Msa1374090:CDS
AGGAACTGCTCCTACTCCTA+TGG 0.485778 tig0019465:-93172 Msa1374090:CDS
GAGATGAAGGAGATGAAAGA+GGG 0.489271 tig0019465:-94538 Msa1374090:CDS
GTGTTTGAATTTCAAGGGAC+GGG 0.490017 tig0019465:-93001 Msa1374090:CDS
AGGAGTTATCATTCACAAGC+TGG 0.492801 tig0019465:+92784 None:intergenic
TGTCCCATCGAGCGAGGAAA+GGG 0.494803 tig0019465:+91808 Msa1374080:CDS
TCTGAATCAGATAAGAAAGA+AGG 0.496204 tig0019465:+92004 Msa1374080:CDS
AACACTTTCTTGGTGGAAAG+TGG 0.497925 tig0019465:-92507 Msa1374090:three_prime_UTR
AGTTGCAATATTTCTGTACA+AGG 0.499276 tig0019465:-92449 Msa1374090:three_prime_UTR
ATCGAGCGAGGAAAGGGAAA+AGG 0.501898 tig0019465:+91814 Msa1374080:CDS
AAGTTGCAAGTTGCAGCAAA+AGG 0.503666 tig0019465:-93343 Msa1374090:CDS
TGATATGAGCAAACTTCTCT+TGG 0.505017 tig0019465:-93619 Msa1374090:CDS
AGTGCAACCAACACAACCTA+TGG 0.506396 tig0019465:+91916 Msa1374080:CDS
TGCTCCGGGGTCCAGGTCCA+AGG 0.507731 tig0019465:-91311 Msa1374090:three_prime_UTR
TTATATCTTGGTCTAAGCCC+TGG 0.508714 tig0019465:-94002 Msa1374090:intron
AGAGATGAAGGAGATGAAAG+AGG 0.511465 tig0019465:-94539 Msa1374090:CDS
AGACACTTGAACAGTGTGGC+TGG 0.511733 tig0019465:-94234 Msa1374090:CDS
GGAAGTGTAACTTGAACTCC+AGG 0.513147 tig0019465:-92223 Msa1374090:three_prime_UTR
CACAAAGAGGGGAGGGAATG+TGG 0.514278 tig0019465:+95271 None:intergenic
AGATTCTCTGGTTGTGACAC+GGG 0.514523 tig0019465:-91479 Msa1374090:three_prime_UTR
TAGTTAGCAGGAGCAGCCCT+TGG 0.515473 tig0019465:+93300 None:intergenic
ACTATTAGACATAATTCAAA+GGG 0.516941 tig0019465:-94353 Msa1374090:CDS
ACCAAGATATAAACTATATG+TGG 0.517704 tig0019465:+94013 None:intergenic
GGAACATGGTGAGGTCGGGC+AGG 0.517884 tig0019465:+92129 Msa1374080:CDS
ATTGTACTCCGCATTCGCCT+TGG 0.518756 tig0019465:+93228 None:intergenic
GGTGTTTGAATTTCAAGGGA+CGG 0.518832 tig0019465:-93002 Msa1374090:CDS
AGGGAAAAGGAAAATGAAAA+GGG 0.518930 tig0019465:+91827 Msa1374080:CDS
GAAGATGTCAGTGTCTGATC+CGG 0.520427 tig0019465:+91409 Msa1374080:CDS
TTGTCCTCCATAGGTTGTGT+TGG 0.520819 tig0019465:-91923 Msa1374090:three_prime_UTR
GATATCAAAGAAGATTTCAA+AGG 0.522974 tig0019465:+92764 None:intergenic
ACTTCCTTTGAGTTTCCAAA+GGG 0.524701 tig0019465:-91565 Msa1374090:three_prime_UTR
GCATTATCCACCATCTCCTT+CGG 0.525548 tig0019465:+91211 Msa1374080:CDS
GCATCATCCACCATATCCTT+CGG 0.526033 tig0019465:+91253 Msa1374080:CDS
TTATGGAGAGACATAACAAA+GGG 0.526760 tig0019465:-94265 Msa1374090:CDS
ATACTCCAAAGGCAATGTCT+TGG 0.529963 tig0019465:+95306 None:intergenic
AGCATTGATGTGACAACAGA+TGG 0.531129 tig0019465:+92070 Msa1374080:CDS
AGAGCTAACAATACTTACAT+TGG 0.531671 tig0019465:-93528 Msa1374090:CDS
TGGCAATTGGTAAATTCCAT+AGG 0.538026 tig0019465:+93156 None:intergenic
GTCCACCATCTCCTTGGACC+TGG 0.539700 tig0019465:+91300 Msa1374080:CDS
TCAATGGAACATGGTGAGGT+CGG 0.539979 tig0019465:+92124 Msa1374080:CDS
TTCAGTGTCATAACACTGAC+TGG 0.540460 tig0019465:+91950 Msa1374080:CDS
TACAAGAAATTATATGCTTG+AGG 0.541015 tig0019465:+92613 None:intergenic
AACTTTCAAAACAAAGCTTG+TGG 0.541276 tig0019465:+95401 None:intergenic
TTTCCCTATATCACTGAAGC+AGG 0.541444 tig0019465:-94206 Msa1374090:intron
ATGTTGGTGTTTGAATTTCA+AGG 0.542716 tig0019465:-93007 Msa1374090:CDS
TTGGTAAATTCCATAGGAGT+AGG 0.543440 tig0019465:+93162 None:intergenic
TCAATCAATGAAAGAGACCC+TGG 0.549089 tig0019465:+92205 Msa1374080:CDS
CGACCATAACGGCGAACTGT+TGG 0.551046 tig0019465:-92343 Msa1374090:three_prime_UTR
CAATGAGGAAGAAGACTCAA+TGG 0.551065 tig0019465:+92108 Msa1374080:CDS
AGACAAGAGTCTAGAAAATG+AGG 0.552127 tig0019465:+95224 None:intergenic
AACTTCCTTTGAGTTTCCAA+AGG 0.552524 tig0019465:-91566 Msa1374090:three_prime_UTR
TACTATTAGACATAATTCAA+AGG 0.554134 tig0019465:-94354 Msa1374090:CDS
AGCTAGCATTACACAAACTT+GGG 0.554445 tig0019465:+92678 None:intergenic
TACACAAACTTGGGCCTGCA+GGG 0.554604 tig0019465:+92687 None:intergenic
ATATGAAGCAAGTACTTCCA+AGG 0.555692 tig0019465:-93317 Msa1374090:CDS
TGTTGTCAACACTTTCTTGG+TGG 0.557651 tig0019465:-92514 Msa1374090:three_prime_UTR
GGACTGAGTTTAACATTAGT+CGG 0.558841 tig0019465:+92299 Msa1374080:CDS
GTCCAGGTCCAAGGAGATGG+TGG 0.560062 tig0019465:-91302 Msa1374090:three_prime_UTR
ATTATGTCTAATAGTAACTC+AGG 0.562516 tig0019465:+94361 None:intergenic
TGTTGGTGTTTGAATTTCAA+GGG 0.562671 tig0019465:-93006 Msa1374090:CDS
TTGTCCCATCGAGCGAGGAA+AGG 0.563695 tig0019465:+91807 Msa1374080:CDS
ATCATCATCAGAGAGTCAAT+GGG 0.565599 tig0019465:-94395 Msa1374090:CDS
GAACTTGGAAAGCACAAAGA+GGG 0.569713 tig0019465:+95259 None:intergenic
CAATATCTTGCATGGTAGTG+TGG 0.570310 tig0019465:+95633 None:intergenic
TATGGTCGCAAGTTCAGTTG+TGG 0.571661 tig0019465:+92358 Msa1374080:CDS
AAAGGAAAATGAAAAGGGAA+AGG 0.572297 tig0019465:+91832 Msa1374080:CDS
CTGAATCAGATAAGAAAGAA+GGG 0.574236 tig0019465:+92005 Msa1374080:CDS
TTTCCACATCAAACTCTAGT+GGG 0.574624 tig0019465:+91762 Msa1374080:CDS
TACCATGCAAGATATTGTGT+TGG 0.578066 tig0019465:-95627 Msa1374090:five_prime_UTR
AGGGTCAATCTACATTCATA+GGG 0.579017 tig0019465:+92024 Msa1374080:CDS
AACTGAACTTGCGACCATAA+CGG 0.579458 tig0019465:-92354 Msa1374090:three_prime_UTR
GCTACAAGTGCTCGGCGAGA+TGG 0.582646 tig0019465:+94307 None:intergenic
TTGCAGATTCATGCTCATTG+TGG 0.583392 tig0019465:+93136 None:intergenic
TCTCTCACAATACTCTTGAA+AGG 0.583510 tig0019465:+94559 None:intergenic
AAGATTCTCTGGTTGTGACA+CGG 0.584236 tig0019465:-91480 Msa1374090:three_prime_UTR
CCCATATCTTCAGTCCAAGA+AGG 0.587259 tig0019465:-93195 Msa1374090:CDS
TTCTTTACAACCAAACCACA+TGG 0.588770 tig0019465:+95484 None:intergenic
TTTCCCACTAGAGTTTGATG+TGG 0.593804 tig0019465:-91765 Msa1374090:three_prime_UTR
CTCAATGTTCTTCGTACGAG+AGG 0.595127 tig0019465:-93252 Msa1374090:CDS
AAGAATTGTCCCATCGAGCG+AGG 0.597091 tig0019465:+91802 Msa1374080:CDS
ATCCAACACAATATCTTGCA+TGG 0.599048 tig0019465:+95625 None:intergenic
GGCATGAACAACTGCAATGT+TGG 0.599403 tig0019465:-93023 Msa1374090:CDS
GAGAGGATATCGATAATCCA+TGG 0.599763 tig0019465:+92855 None:intergenic
CTTCTTGGACTGAAGATATG+GGG 0.599973 tig0019465:+93196 None:intergenic
CGAGAGGTCCAAGGCGAATG+CGG 0.601851 tig0019465:-93236 Msa1374090:CDS
AGCATCTTCTTCAGGCACAA+AGG 0.605435 tig0019465:+91691 Msa1374080:CDS
ATAAAGACACTCACAATCGC+AGG 0.606983 tig0019465:+92278 Msa1374080:CDS
ACAAAGGATAAGAAGCATCA+TGG 0.606998 tig0019465:+91707 Msa1374080:CDS
ATTAGACATAATTCAAAGGG+TGG 0.608482 tig0019465:-94350 Msa1374090:CDS
TGGAAAGCACAAAGAGGGGA+GGG 0.611473 tig0019465:+95264 None:intergenic
GATTCTCTGGTTGTGACACG+GGG 0.616837 tig0019465:-91478 Msa1374090:three_prime_UTR
TTCTTCGTACGAGAGGTCCA+AGG 0.616949 tig0019465:-93245 Msa1374090:CDS
ACTAAGCATATGCATAGACA+TGG 0.617362 tig0019465:-94484 Msa1374090:CDS
AGTCCCCTTTGGAAACTCAA+AGG 0.618613 tig0019465:+91561 Msa1374080:CDS
ACACTGACTGGTGACAATAG+AGG 0.621058 tig0019465:+91962 Msa1374080:CDS
AAGTACCTCAAATACTCCAA+AGG 0.627238 tig0019465:+95295 None:intergenic
AGAGGAGCAACAATGCATGT+TGG 0.629716 tig0019465:+91980 Msa1374080:CDS
GCTGCTCAAACAGATTGCAA+AGG 0.630739 tig0019465:+92819 None:intergenic
GCAACCAACACAACCTATGG+AGG 0.633233 tig0019465:+91919 Msa1374080:CDS
AGGCAAGTGATAAAAGTGCA+AGG 0.635649 tig0019465:-95593 Msa1374090:five_prime_UTR
TGTGGTTTGGTTGTAAAGAA+GGG 0.635990 tig0019465:-95481 Msa1374090:five_prime_UTR
ATTGGCAACATGTATAGAAG+AGG 0.636703 tig0019465:-94514 Msa1374090:CDS
CGGGAAGGACATATTCACCA+TGG 0.637363 tig0019465:-92872 Msa1374090:CDS
TGGAAGCTAGTGAAACCACT+TGG 0.639315 tig0019465:-94330 Msa1374090:CDS
TTTCAAGGGACGGGTTACAG+TGG 0.641025 tig0019465:-92992 Msa1374090:CDS
CTAACCATGAAGAAAACACT+CGG 0.642497 tig0019465:+91354 Msa1374080:CDS
AGACTCAATGGAACATGGTG+AGG 0.644780 tig0019465:+92120 Msa1374080:CDS
AGGCACAAGCTACAAGTGCT+CGG 0.645228 tig0019465:+94299 None:intergenic
AGAACTTGGAAAGCACAAAG+AGG 0.645315 tig0019465:+95258 None:intergenic
AACTTGGAAAGCACAAAGAG+GGG 0.645714 tig0019465:+95260 None:intergenic
TATGAAGCAAGTACTTCCAA+GGG 0.646074 tig0019465:-93316 Msa1374090:CDS
TTGGAAAGCACAAAGAGGGG+AGG 0.646454 tig0019465:+95263 None:intergenic
GAAGAAGACTCAATGGAACA+TGG 0.649274 tig0019465:+92115 Msa1374080:CDS
TCTAGGGCCGAAGGAGATGG+TGG 0.656152 tig0019465:-91218 Msa1374090:three_prime_UTR
TCTAGGGCCGAAGGATATGG+TGG 0.657238 tig0019465:-91260 Msa1374090:three_prime_UTR
TGTGAGTGTCTTTATCGTCG+TGG 0.661271 tig0019465:-92270 Msa1374090:three_prime_UTR
GATGTGACAACAGATGGAGA+AGG 0.661909 tig0019465:+92076 Msa1374080:CDS
ATGTCTAATAGTAACTCAGG+AGG 0.663267 tig0019465:+94364 None:intergenic
AAGGCTTGAAAAGCAGAGAG+AGG 0.664732 tig0019465:+92838 None:intergenic
ATTATGGAGAGACATAACAA+AGG 0.674047 tig0019465:-94266 Msa1374090:CDS
ATATCTTCAGTCCAAGAAGG+AGG 0.675556 tig0019465:-93192 Msa1374090:CDS
TCTCCATAATCTACAAACTG+AGG 0.678466 tig0019465:+94279 None:intergenic
TGCTCGGCGAGATGGCCAAG+TGG 0.681754 tig0019465:+94315 None:intergenic
CTTCCTTTGAGTTTCCAAAG+GGG 0.694307 tig0019465:-91564 Msa1374090:three_prime_UTR
AGAAGGAAACACTAACAATG+AGG 0.700109 tig0019465:+92093 Msa1374080:CDS
TGCTGATAGTGATATTGGTG+AGG 0.701371 tig0019465:+94435 None:intergenic
GATGGAAGCGAAGAAACATG+TGG 0.713919 tig0019465:+93366 None:intergenic
AGGTTGTGTTGGTTGCACTG+AGG 0.746719 tig0019465:-91912 Msa1374090:three_prime_UTR
GAAGTGTAACTTGAACTCCA+GGG 0.753989 tig0019465:-92222 Msa1374090:three_prime_UTR
GGAAGCGAAGAAACATGTGG+AGG 0.757377 tig0019465:+93369 None:intergenic
GTTAAGACACTTGAACAGTG+TGG 0.757990 tig0019465:-94238 Msa1374090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAAATTCATATTAGATTA+AGG - tig0019465:91699-91718 Msa1374090:three_prime_UTR 15.0%
!!! TTTTGTAATAAATATTGTGA+TGG + tig0019465:91745-91764 Msa1374080:CDS 15.0%
!! ATCACAATATTTATTACAAA+AGG - tig0019465:91744-91763 Msa1374090:three_prime_UTR 15.0%
!! TCACAATATTTATTACAAAA+GGG - tig0019465:91745-91764 Msa1374090:three_prime_UTR 15.0%
!!! TTTTCTTTCACTTCTTTTTT+TGG - tig0019465:91666-91685 Msa1374090:three_prime_UTR 20.0%
!! GATATAGCAGTAAAAAAATA+AGG - tig0019465:91767-91786 Msa1374090:three_prime_UTR 20.0%
!!! AACTGCCTTAATTATTTTTT+GGG + tig0019465:91962-91981 Msa1374080:CDS 20.0%
!!! AAACTGCCTTAATTATTTTT+TGG + tig0019465:91963-91982 Msa1374080:CDS 20.0%
!!! TTTTTTGAGGGAAATAATTA+AGG - tig0019465:91987-92006 Msa1374090:three_prime_UTR 20.0%
!!! TTTTTCTTGTTCCTTTTTAT+AGG + tig0019465:92036-92055 Msa1374080:CDS 20.0%
!! TACTATTAGACATAATTCAA+AGG - tig0019465:92479-92498 Msa1374090:three_prime_UTR 20.0%
!! ACTATTAGACATAATTCAAA+GGG - tig0019465:92480-92499 Msa1374090:three_prime_UTR 20.0%
!!! TGTAATTTTTGTTTTAAGCT+TGG - tig0019465:92685-92704 Msa1374090:three_prime_UTR 20.0%
!! ACATGAAATTATTCTCTATT+TGG - tig0019465:92870-92889 Msa1374090:CDS 20.0%
!!! TTTGGTAACAAAATTTTGTT+TGG - tig0019465:92888-92907 Msa1374090:CDS 20.0%
!! AAAAAAAAAAGCCTAAAAGA+AGG + tig0019465:92984-93003 None:intergenic 20.0%
!!! TTTTTTTAGTCTTTGAACTA+TGG - tig0019465:93091-93110 Msa1374090:CDS 20.0%
!! AATAACACAATTCACAAATA+TGG + tig0019465:93174-93193 None:intergenic 20.0%
!!! CACAGAATTTTTAATATCAT+TGG - tig0019465:93265-93284 Msa1374090:CDS 20.0%
!! TAATCATTAAGCAAAATAAC+AGG - tig0019465:93399-93418 Msa1374090:CDS 20.0%
!! GAAAAAGTTATACTACAATT+TGG - tig0019465:93932-93951 Msa1374090:intron 20.0%
!! ATACTACAATTTGGAAAAAT+CGG - tig0019465:93941-93960 Msa1374090:intron 20.0%
!!! TTTTGTGTTTCTTACTTTTT+TGG - tig0019465:95206-95225 Msa1374090:intron 20.0%
! CAAGACCCAAAAAATAATTA+AGG - tig0019465:91954-91973 Msa1374090:three_prime_UTR 25.0%
!!! AGGCAGTTTTTTTTTTTTTG+AGG - tig0019465:91974-91993 Msa1374090:three_prime_UTR 25.0%
!!! GGCAGTTTTTTTTTTTTTGA+GGG - tig0019465:91975-91994 Msa1374090:three_prime_UTR 25.0%
! GATAAGTTGTGTATATTTGT+AGG + tig0019465:92248-92267 Msa1374080:CDS 25.0%
! ATTATGTCTAATAGTAACTC+AGG + tig0019465:92475-92494 None:intergenic 25.0%
! CTCTTAATAAAACACTGAAT+TGG + tig0019465:92786-92805 None:intergenic 25.0%
! TCCACATATAGTTTATATCT+TGG - tig0019465:92819-92838 Msa1374090:CDS 25.0%
! ACCAAGATATAAACTATATG+TGG + tig0019465:92823-92842 None:intergenic 25.0%
!! AACTTGAATTACCTTCTTTT+AGG - tig0019465:92970-92989 Msa1374090:CDS 25.0%
!!! ATTGATTTGTAAGTTTACTC+TGG + tig0019465:93040-93059 None:intergenic 25.0%
! GTTCAAAGACTAAAAAAAGA+AGG + tig0019465:93089-93108 None:intergenic 25.0%
! ATACTTACATTGGAAAGTTA+AGG - tig0019465:93315-93334 Msa1374090:CDS 25.0%
!! AATAACAGGTCTAATTTTCT+CGG - tig0019465:93413-93432 Msa1374090:CDS 25.0%
! TACTACAATTTGGAAAAATC+GGG - tig0019465:93942-93961 Msa1374090:intron 25.0%
! GATATCAAAGAAGATTTCAA+AGG + tig0019465:94072-94091 None:intergenic 25.0%
! TACAAGAAATTATATGCTTG+AGG + tig0019465:94223-94242 None:intergenic 25.0%
! TGACATTGCACATAATAAAA+AGG - tig0019465:94270-94289 Msa1374090:CDS 25.0%
!!! TGTATTTTTATGGTGTACAA+GGG - tig0019465:94407-94426 Msa1374090:CDS 25.0%
! AATAATTCACTCATGTTTCA+TGG + tig0019465:94655-94674 None:intergenic 25.0%
! CACAAAAACAAAATTAGATG+AGG + tig0019465:95325-95344 None:intergenic 25.0%
TTGTGTTGGATTATAGCTTA+AGG - tig0019465:91220-91239 Msa1374090:three_prime_UTR 30.0%
GGACAGAACAAAACTTAATT+TGG + tig0019465:91331-91350 Msa1374080:CDS 30.0%
AACTTTCAAAACAAAGCTTG+TGG + tig0019465:91435-91454 Msa1374080:CDS 30.0%
TTGAGGTTTGTGAAGATTAT+AGG + tig0019465:91477-91496 Msa1374080:CDS 30.0%
ATGTCTTGGACAAAACAAAA+AGG + tig0019465:91516-91535 Msa1374080:CDS 30.0%
TCTAGAAAATGAGGAAATCT+TGG + tig0019465:91603-91622 Msa1374080:CDS 30.0%
AGAAAAGCTCAAAAATTGAG+AGG + tig0019465:91652-91671 Msa1374080:CDS 30.0%
!! GCAGTTGAAAATTTTGAAAG+AGG - tig0019465:92009-92028 Msa1374090:three_prime_UTR 30.0%
TTGAAAGAGGTCCTATAAAA+AGG - tig0019465:92022-92041 Msa1374090:three_prime_UTR 30.0%
ACACTAACTACATTGAACTT+AGG - tig0019465:92131-92150 Msa1374090:three_prime_UTR 30.0%
GTGTTTGAAAGAGAGAAATT+AGG + tig0019465:92202-92221 Msa1374080:CDS 30.0%
TTTCTCTCTTTCAAACACAA+TGG - tig0019465:92204-92223 Msa1374090:three_prime_UTR 30.0%
ATTAGACATAATTCAAAGGG+TGG - tig0019465:92483-92502 Msa1374090:three_prime_UTR 30.0%
ATTATGGAGAGACATAACAA+AGG - tig0019465:92567-92586 Msa1374090:three_prime_UTR 30.0%
TTATGGAGAGACATAACAAA+GGG - tig0019465:92568-92587 Msa1374090:three_prime_UTR 30.0%
!! AGTGTTTTATTAAGAGAGAG+AGG - tig0019465:92790-92809 Msa1374090:exon 30.0%
!! GTGTTTTATTAAGAGAGAGA+GGG - tig0019465:92791-92810 Msa1374090:exon 30.0%
CACAAATCGAGAATAGTTAA+CGG + tig0019465:93133-93152 None:intergenic 30.0%
! TAACTATTCTCGATTTGTGA+AGG - tig0019465:93134-93153 Msa1374090:CDS 30.0%
AGAGCTAACAATACTTACAT+TGG - tig0019465:93305-93324 Msa1374090:CDS 30.0%
! AATCAATCCACATCTTTTCA+TGG - tig0019465:93349-93368 Msa1374090:CDS 30.0%
!!! GCTTTGTTTTTCAAAATCAG+AGG + tig0019465:93782-93801 None:intergenic 30.0%
! ATGTTGGTGTTTGAATTTCA+AGG - tig0019465:93826-93845 Msa1374090:intron 30.0%
! TGTTGGTGTTTGAATTTCAA+GGG - tig0019465:93827-93846 Msa1374090:intron 30.0%
! AGTTGCAATATTTCTGTACA+AGG - tig0019465:94384-94403 Msa1374090:CDS 30.0%
!! CTGTACAAGGTGTATTTTTA+TGG - tig0019465:94397-94416 Msa1374090:CDS 30.0%
!! GTGTATTTTTATGGTGTACA+AGG - tig0019465:94406-94425 Msa1374090:CDS 30.0%
CTGAATCAGATAAGAAAGAA+GGG + tig0019465:94831-94850 None:intergenic 30.0%
TCTGAATCAGATAAGAAAGA+AGG + tig0019465:94832-94851 None:intergenic 30.0%
! TCTTTGATACCTTTTTGCAT+TGG - tig0019465:94976-94995 Msa1374090:intron 30.0%
AAAGGAAAATGAAAAGGGAA+AGG + tig0019465:95004-95023 None:intergenic 30.0%
AGGGAAAAGGAAAATGAAAA+GGG + tig0019465:95009-95028 None:intergenic 30.0%
AAGGGAAAAGGAAAATGAAA+AGG + tig0019465:95010-95029 None:intergenic 30.0%
!! TCTCTTTCTCTTTAGTTTGA+AGG - tig0019465:95244-95263 Msa1374090:five_prime_UTR 30.0%
! GCAAAAAAATGAGGTGTTAA+AGG + tig0019465:95505-95524 None:intergenic 30.0%
TACCATGCAAGATATTGTGT+TGG - tig0019465:91206-91225 Msa1374090:three_prime_UTR 35.0%
ATCCAACACAATATCTTGCA+TGG + tig0019465:91211-91230 Msa1374080:CDS 35.0%
!!! TAAGTTTTGTTCTGTCCATG+TGG - tig0019465:91334-91353 Msa1374090:three_prime_UTR 35.0%
TTCTTTACAACCAAACCACA+TGG + tig0019465:91352-91371 Msa1374080:CDS 35.0%
!! ATGTGGTTTGGTTGTAAAGA+AGG - tig0019465:91351-91370 Msa1374090:three_prime_UTR 35.0%
!! TGTGGTTTGGTTGTAAAGAA+GGG - tig0019465:91352-91371 Msa1374090:three_prime_UTR 35.0%
ACAAAACAAAAAGGTGAGAG+TGG + tig0019465:91507-91526 Msa1374080:CDS 35.0%
AAGTACCTCAAATACTCCAA+AGG + tig0019465:91541-91560 Msa1374080:CDS 35.0%
AGACAAGAGTCTAGAAAATG+AGG + tig0019465:91612-91631 Msa1374080:CDS 35.0%
! TTTTCTAGACTCTTGTCTCA+CGG - tig0019465:91614-91633 Msa1374090:three_prime_UTR 35.0%
! CATTGATTACACAGCTTTCA+AGG - tig0019465:91880-91899 Msa1374090:three_prime_UTR 35.0%
AGAAAAATCTCAAGAGAAGC+AGG - tig0019465:92049-92068 Msa1374090:three_prime_UTR 35.0%
TCTCTCACAATACTCTTGAA+AGG + tig0019465:92277-92296 Msa1374080:CDS 35.0%
ATTGGCAACATGTATAGAAG+AGG - tig0019465:92319-92338 Msa1374090:three_prime_UTR 35.0%
ACTAAGCATATGCATAGACA+TGG - tig0019465:92349-92368 Msa1374090:three_prime_UTR 35.0%
ATCATCATCAGAGAGTCAAT+GGG - tig0019465:92438-92457 Msa1374090:three_prime_UTR 35.0%
ATGTCTAATAGTAACTCAGG+AGG + tig0019465:92472-92491 None:intergenic 35.0%
TCTCCATAATCTACAAACTG+AGG + tig0019465:92557-92576 None:intergenic 35.0%
TTACCTGCTTCAGTGATATA+GGG + tig0019465:92633-92652 None:intergenic 35.0%
ATTACCTGCTTCAGTGATAT+AGG + tig0019465:92634-92653 None:intergenic 35.0%
!! GTTTTAAGCTTGGAAGAACA+TGG - tig0019465:92695-92714 Msa1374090:three_prime_UTR 35.0%
ATTGTATTTGCAGCTCTTTC+TGG - tig0019465:93191-93210 Msa1374090:CDS 35.0%
TGATATGAGCAAACTTCTCT+TGG - tig0019465:93214-93233 Msa1374090:CDS 35.0%
! GAAAAGATGTGGATTGATTG+AGG + tig0019465:93348-93367 None:intergenic 35.0%
GCATTAACCATGAAAAGATG+TGG + tig0019465:93359-93378 None:intergenic 35.0%
!! TTGGAAGTACTTGCTTCATA+TGG + tig0019465:93517-93536 None:intergenic 35.0%
ATATGAAGCAAGTACTTCCA+AGG - tig0019465:93516-93535 Msa1374090:intron 35.0%
TATGAAGCAAGTACTTCCAA+GGG - tig0019465:93517-93536 Msa1374090:intron 35.0%
!! GTTGCTACTTTATAGTTAGC+AGG + tig0019465:93548-93567 None:intergenic 35.0%
TTGGTAAATTCCATAGGAGT+AGG + tig0019465:93674-93693 None:intergenic 35.0%
TGGCAATTGGTAAATTCCAT+AGG + tig0019465:93680-93699 None:intergenic 35.0%
AAGCCAGAAGTTGTTGAATT+TGG - tig0019465:93728-93747 Msa1374090:intron 35.0%
! TGAAAAACAAAGCACCAAGA+TGG - tig0019465:93789-93808 Msa1374090:intron 35.0%
ACAATTTGGAAAAATCGGGA+AGG - tig0019465:93946-93965 Msa1374090:intron 35.0%
AGCTAGCATTACACAAACTT+GGG + tig0019465:94158-94177 None:intergenic 35.0%
TTGTGTAATGCTAGCTGTTT+AGG - tig0019465:94162-94181 Msa1374090:intron 35.0%
TGATGTTGTCAACACTTTCT+TGG - tig0019465:94316-94335 Msa1374090:CDS 35.0%
GGACTGAGTTTAACATTAGT+CGG + tig0019465:94537-94556 None:intergenic 35.0%
AGAAGGAAACACTAACAATG+AGG + tig0019465:94743-94762 None:intergenic 35.0%
AGGGTCAATCTACATTCATA+GGG + tig0019465:94812-94831 None:intergenic 35.0%
AAGGGTCAATCTACATTCAT+AGG + tig0019465:94813-94832 None:intergenic 35.0%
!!! CTGAATTTTTTGTCCTCCAT+AGG - tig0019465:94901-94920 Msa1374090:intron 35.0%
TTTCCACATCAAACTCTAGT+GGG + tig0019465:95074-95093 None:intergenic 35.0%
! TTTTCCACATCAAACTCTAG+TGG + tig0019465:95075-95094 None:intergenic 35.0%
!! ACAAAGGATAAGAAGCATCA+TGG + tig0019465:95129-95148 None:intergenic 35.0%
! AACTTCCTTTGAGTTTCCAA+AGG - tig0019465:95267-95286 Msa1374090:five_prime_UTR 35.0%
! ACTTCCTTTGAGTTTCCAAA+GGG - tig0019465:95268-95287 Msa1374090:five_prime_UTR 35.0%
CTAACCATGAAGAAAACACT+CGG + tig0019465:95482-95501 None:intergenic 35.0%
!!! AACACCTCATTTTTTTGCTC+CGG - tig0019465:95507-95526 Msa1374090:five_prime_UTR 35.0%
!!! ATGCTCATTTTTTCGCTCTA+GGG - tig0019465:95557-95576 Msa1374090:five_prime_UTR 35.0%
!!! ATGCTCATTTTTTCGCTCTA+GGG - tig0019465:95557-95576 Msa1374090:five_prime_UTR 35.0%
! CAATATCTTGCATGGTAGTG+TGG + tig0019465:91203-91222 Msa1374080:CDS 40.0%
! AGGCAAGTGATAAAAGTGCA+AGG - tig0019465:91240-91259 Msa1374090:three_prime_UTR 40.0%
TTTGTTCTGTCCATGTGGTT+TGG - tig0019465:91339-91358 Msa1374090:three_prime_UTR 40.0%
AACAAAAAGGTGAGAGTGGA+TGG + tig0019465:91503-91522 Msa1374080:CDS 40.0%
TTTGTCCAAGACATTGCCTT+TGG - tig0019465:91522-91541 Msa1374090:three_prime_UTR 40.0%
ATACTCCAAAGGCAATGTCT+TGG + tig0019465:91530-91549 Msa1374080:CDS 40.0%
!! CATTGCCTTTGGAGTATTTG+AGG - tig0019465:91533-91552 Msa1374090:three_prime_UTR 40.0%
! AACTTGGAAAGCACAAAGAG+GGG + tig0019465:91576-91595 Msa1374080:CDS 40.0%
! GAACTTGGAAAGCACAAAGA+GGG + tig0019465:91577-91596 Msa1374080:CDS 40.0%
! AGAACTTGGAAAGCACAAAG+AGG + tig0019465:91578-91597 Msa1374080:CDS 40.0%
AGGAAATCTTGGAGAGAACT+TGG + tig0019465:91592-91611 Msa1374080:CDS 40.0%
AAAATGTTAACGAGTGCCTC+CGG - tig0019465:91790-91809 Msa1374090:three_prime_UTR 40.0%
! GAGTATTGTGAGAGAGATGA+AGG - tig0019465:92282-92301 Msa1374090:three_prime_UTR 40.0%
AGAGATGAAGGAGATGAAAG+AGG - tig0019465:92294-92313 Msa1374090:three_prime_UTR 40.0%
GAGATGAAGGAGATGAAAGA+GGG - tig0019465:92295-92314 Msa1374090:three_prime_UTR 40.0%
AAGGAGATGAAAGAGGGAAT+TGG - tig0019465:92301-92320 Msa1374090:three_prime_UTR 40.0%
GATATTGGTGAGGAACATTC+TGG + tig0019465:92391-92410 None:intergenic 40.0%
! TGCTGATAGTGATATTGGTG+AGG + tig0019465:92401-92420 None:intergenic 40.0%
!! GTTGGTGCTGATAGTGATAT+TGG + tig0019465:92406-92425 None:intergenic 40.0%
!! GATGATGATGATGGTGTTGT+TGG + tig0019465:92424-92443 None:intergenic 40.0%
! CTCTCTGATGATGATGATGA+TGG + tig0019465:92433-92452 None:intergenic 40.0%
CATCATCATCAGAGAGTCAA+TGG - tig0019465:92437-92456 Msa1374090:three_prime_UTR 40.0%
GTGCCTCAGTTTGTAGATTA+TGG - tig0019465:92551-92570 Msa1374090:three_prime_UTR 40.0%
GTTAAGACACTTGAACAGTG+TGG - tig0019465:92595-92614 Msa1374090:three_prime_UTR 40.0%
TTTCCCTATATCACTGAAGC+AGG - tig0019465:92627-92646 Msa1374090:three_prime_UTR 40.0%
CACTGAATTGGATTGTCTCT+TGG + tig0019465:92774-92793 None:intergenic 40.0%
TTATATCTTGGTCTAAGCCC+TGG - tig0019465:92831-92850 Msa1374090:CDS 40.0%
TGAGCACAACAATCTTACCA+GGG + tig0019465:92851-92870 None:intergenic 40.0%
ACCAAGTTCACGATCTTAGA+TGG - tig0019465:93437-93456 Msa1374090:intron 40.0%
! ACCATCTAAGATCGTGAACT+TGG + tig0019465:93441-93460 None:intergenic 40.0%
AAGTTGCAAGTTGCAGCAAA+AGG - tig0019465:93490-93509 Msa1374090:intron 40.0%
CTTCTTGGACTGAAGATATG+GGG + tig0019465:93640-93659 None:intergenic 40.0%
CCTTCTTGGACTGAAGATAT+GGG + tig0019465:93641-93660 None:intergenic 40.0%
TCCTTCTTGGACTGAAGATA+TGG + tig0019465:93642-93661 None:intergenic 40.0%
ATATCTTCAGTCCAAGAAGG+AGG - tig0019465:93641-93660 Msa1374090:intron 40.0%
TTCATGCTCATTGTGGCAAT+TGG + tig0019465:93693-93712 None:intergenic 40.0%
TTGCAGATTCATGCTCATTG+TGG + tig0019465:93700-93719 None:intergenic 40.0%
GAGCCAAATTCAACAACTTC+TGG + tig0019465:93734-93753 None:intergenic 40.0%
GGTGTTTGAATTTCAAGGGA+CGG - tig0019465:93831-93850 Msa1374090:intron 40.0%
GTGTTTGAATTTCAAGGGAC+GGG - tig0019465:93832-93851 Msa1374090:intron 40.0%
! GTTCTGCAGCTGAAACATTT+TGG + tig0019465:93910-93929 None:intergenic 40.0%
GAGAGGATATCGATAATCCA+TGG + tig0019465:93981-94000 None:intergenic 40.0%
AGGAGTTATCATTCACAAGC+TGG + tig0019465:94052-94071 None:intergenic 40.0%
CAGCTAGCATTACACAAACT+TGG + tig0019465:94159-94178 None:intergenic 40.0%
TGTTGTCAACACTTTCTTGG+TGG - tig0019465:94319-94338 Msa1374090:CDS 40.0%
AACACTTTCTTGGTGGAAAG+TGG - tig0019465:94326-94345 Msa1374090:CDS 40.0%
AACTGAACTTGCGACCATAA+CGG - tig0019465:94479-94498 Msa1374090:CDS 40.0%
ATAAAGACACTCACAATCGC+AGG + tig0019465:94558-94577 None:intergenic 40.0%
! ATGGTTTCTACAGGCTTTTG+TGG - tig0019465:94589-94608 Msa1374090:five_prime_UTR 40.0%
GAAGTGTAACTTGAACTCCA+GGG - tig0019465:94611-94630 Msa1374090:intron 40.0%
TCAATCAATGAAAGAGACCC+TGG + tig0019465:94631-94650 None:intergenic 40.0%
GAAGAAGACTCAATGGAACA+TGG + tig0019465:94721-94740 None:intergenic 40.0%
CAATGAGGAAGAAGACTCAA+TGG + tig0019465:94728-94747 None:intergenic 40.0%
!! AGCATTGATGTGACAACAGA+TGG + tig0019465:94766-94785 None:intergenic 40.0%
TGTCACATCAATGCTCTCTT+CGG - tig0019465:94771-94790 Msa1374090:intron 40.0%
TTCAGTGTCATAACACTGAC+TGG + tig0019465:94886-94905 None:intergenic 40.0%
TTTCCCACTAGAGTTTGATG+TGG - tig0019465:95068-95087 Msa1374090:intron 40.0%
! GATGCTTTGGCATGTTGATT+CGG - tig0019465:95159-95178 Msa1374090:intron 40.0%
! CTTCCTTTGAGTTTCCAAAG+GGG - tig0019465:95269-95288 Msa1374090:five_prime_UTR 40.0%
AATAACACCAAAGTCCCCTT+TGG + tig0019465:95286-95305 None:intergenic 40.0%
GTGTGCTTAGAAAGATTCTC+TGG - tig0019465:95342-95361 Msa1374090:five_prime_UTR 40.0%
AAGATTCTCTGGTTGTGACA+CGG - tig0019465:95353-95372 Msa1374090:five_prime_UTR 40.0%
! ACACGGGGATGATTTTCAAT+GGG - tig0019465:95370-95389 Msa1374090:five_prime_UTR 40.0%
TTCAATGGGGACTTCATCTT+TGG - tig0019465:95384-95403 Msa1374090:five_prime_UTR 40.0%
!! ATCTTTGGTTCTGCTTCACT+TGG - tig0019465:95399-95418 Msa1374090:five_prime_UTR 40.0%
CTACCTCGCAAGAAGAAAAA+GGG + tig0019465:95449-95468 None:intergenic 40.0%
TCTACCTCGCAAGAAGAAAA+AGG + tig0019465:95450-95469 None:intergenic 40.0%
! TATGCCGAGTGTTTTCTTCA+TGG - tig0019465:95475-95494 Msa1374090:five_prime_UTR 40.0%
!!! ACACCTCATTTTTTTGCTCC+GGG - tig0019465:95508-95527 Msa1374090:five_prime_UTR 40.0%
!!! GATGCTCATTTTTTCGCTCT+AGG - tig0019465:95556-95575 Msa1374090:five_prime_UTR 40.0%
!!! GATGCTCATTTTTTCGCTCT+AGG - tig0019465:95556-95575 Msa1374090:five_prime_UTR 40.0%
AAAAAGGTGAGAGTGGATGG+AGG + tig0019465:91500-91519 Msa1374080:CDS 45.0%
AAATGTTAACGAGTGCCTCC+GGG - tig0019465:91791-91810 Msa1374090:three_prime_UTR 45.0%
TGCTTCCTTAACTAGTGCCA+CGG - tig0019465:91919-91938 Msa1374090:three_prime_UTR 45.0%
TGGAAGCTAGTGAAACCACT+TGG - tig0019465:92503-92522 Msa1374090:three_prime_UTR 45.0%
ATTGGATTGTCTCTTGGAGC+AGG + tig0019465:92768-92787 None:intergenic 45.0%
GTGAGCACAACAATCTTACC+AGG + tig0019465:92852-92871 None:intergenic 45.0%
GATGGAAGCGAAGAAACATG+TGG + tig0019465:93470-93489 None:intergenic 45.0%
TGCTGCAACTTGCAACTTGA+TGG + tig0019465:93488-93507 None:intergenic 45.0%
CTCAATGTTCTTCGTACGAG+AGG - tig0019465:93581-93600 Msa1374090:CDS 45.0%
CCCATATCTTCAGTCCAAGA+AGG - tig0019465:93638-93657 Msa1374090:intron 45.0%
TGCAGTTGTTCATGCCATCT+TGG + tig0019465:93806-93825 None:intergenic 45.0%
GGCATGAACAACTGCAATGT+TGG - tig0019465:93810-93829 Msa1374090:intron 45.0%
!!! GCAGCTGAAACATTTTGGCT+AGG + tig0019465:93905-93924 None:intergenic 45.0%
AAGGCTTGAAAAGCAGAGAG+AGG + tig0019465:93998-94017 None:intergenic 45.0%
GCTGCTCAAACAGATTGCAA+AGG + tig0019465:94017-94036 None:intergenic 45.0%
!! ACTCTCATTTTTCACCCTGC+AGG - tig0019465:94132-94151 Msa1374090:intron 45.0%
TATGGTCGCAAGTTCAGTTG+TGG + tig0019465:94478-94497 None:intergenic 45.0%
TGTGAGTGTCTTTATCGTCG+TGG - tig0019465:94563-94582 Msa1374090:CDS 45.0%
GTCTTTATCGTCGTGGTTGA+TGG - tig0019465:94570-94589 Msa1374090:exon 45.0%
!! TCGTGGTTGATGGTTTCTAC+AGG - tig0019465:94580-94599 Msa1374090:exon 45.0%
! GGAAGTGTAACTTGAACTCC+AGG - tig0019465:94610-94629 Msa1374090:intron 45.0%
TCAATGGAACATGGTGAGGT+CGG + tig0019465:94712-94731 None:intergenic 45.0%
AGACTCAATGGAACATGGTG+AGG + tig0019465:94716-94735 None:intergenic 45.0%
GATGTGACAACAGATGGAGA+AGG + tig0019465:94760-94779 None:intergenic 45.0%
AGAGGAGCAACAATGCATGT+TGG + tig0019465:94856-94875 None:intergenic 45.0%
! ACACTGACTGGTGACAATAG+AGG + tig0019465:94874-94893 None:intergenic 45.0%
TTGTCCTCCATAGGTTGTGT+TGG - tig0019465:94910-94929 Msa1374090:intron 45.0%
AGTGCAACCAACACAACCTA+TGG + tig0019465:94920-94939 None:intergenic 45.0%
!! GGAAAGGCACCAATGCAAAA+AGG + tig0019465:94988-95007 None:intergenic 45.0%
AGCATCTTCTTCAGGCACAA+AGG + tig0019465:95145-95164 None:intergenic 45.0%
TGTGCCTGAAGAAGATGCTT+TGG - tig0019465:95146-95165 Msa1374090:intron 45.0%
! CATGCCAAAGCATCTTCTTC+AGG + tig0019465:95153-95172 None:intergenic 45.0%
!! CTTTGGCATGTTGATTCGGT+TGG - tig0019465:95163-95182 Msa1374090:intron 45.0%
! AGTCCCCTTTGGAAACTCAA+AGG + tig0019465:95275-95294 None:intergenic 45.0%
TGAGTTTCCAAAGGGGACTT+TGG - tig0019465:95276-95295 Msa1374090:five_prime_UTR 45.0%
AGATTCTCTGGTTGTGACAC+GGG - tig0019465:95354-95373 Msa1374090:five_prime_UTR 45.0%
! GACACGGGGATGATTTTCAA+TGG - tig0019465:95369-95388 Msa1374090:five_prime_UTR 45.0%
! CACGGGGATGATTTTCAATG+GGG - tig0019465:95371-95390 Msa1374090:five_prime_UTR 45.0%
GAAGATGTCAGTGTCTGATC+CGG + tig0019465:95427-95446 None:intergenic 45.0%
! CTTCCCTTTTTCTTCTTGCG+AGG - tig0019465:95443-95462 Msa1374090:five_prime_UTR 45.0%
!!! CACCTCATTTTTTTGCTCCG+GGG - tig0019465:95509-95528 Msa1374090:five_prime_UTR 45.0%
GCATCATCCACCATATCCTT+CGG + tig0019465:95583-95602 None:intergenic 45.0%
GCATTATCCACCATCTCCTT+CGG + tig0019465:95625-95644 None:intergenic 45.0%
! TGGAAAGCACAAAGAGGGGA+GGG + tig0019465:91572-91591 Msa1374080:CDS 50.0%
! TTGGAAAGCACAAAGAGGGG+AGG + tig0019465:91573-91592 Msa1374080:CDS 50.0%
AATGTTAACGAGTGCCTCCG+GGG - tig0019465:91792-91811 Msa1374090:three_prime_UTR 50.0%
GCTTCCTTAACTAGTGCCAC+GGG - tig0019465:91920-91939 Msa1374090:three_prime_UTR 50.0%
CTTCCTTAACTAGTGCCACG+GGG - tig0019465:91921-91940 Msa1374090:three_prime_UTR 50.0%
AGGCACAAGCTACAAGTGCT+CGG + tig0019465:92537-92556 None:intergenic 50.0%
AGACACTTGAACAGTGTGGC+TGG - tig0019465:92599-92618 Msa1374090:three_prime_UTR 50.0%
GGAAGCGAAGAAACATGTGG+AGG + tig0019465:93467-93486 None:intergenic 50.0%
TTCTTCGTACGAGAGGTCCA+AGG - tig0019465:93588-93607 Msa1374090:CDS 50.0%
ATTGTACTCCGCATTCGCCT+TGG + tig0019465:93608-93627 None:intergenic 50.0%
TAGGAGCAGTTCCTCCTTCT+TGG + tig0019465:93655-93674 None:intergenic 50.0%
AGGAACTGCTCCTACTCCTA+TGG - tig0019465:93661-93680 Msa1374090:intron 50.0%
!! TTTCAAGGGACGGGTTACAG+TGG - tig0019465:93841-93860 Msa1374090:intron 50.0%
CGGGAAGGACATATTCACCA+TGG - tig0019465:93961-93980 Msa1374090:intron 50.0%
TACACAAACTTGGGCCTGCA+GGG + tig0019465:94149-94168 None:intergenic 50.0%
TTACACAAACTTGGGCCTGC+AGG + tig0019465:94150-94169 None:intergenic 50.0%
CAATGGAACATGGTGAGGTC+GGG + tig0019465:94711-94730 None:intergenic 50.0%
! CTCTTCGGACTCAGTCTTGT+AGG - tig0019465:94786-94805 Msa1374090:intron 50.0%
GCAACCAACACAACCTATGG+AGG + tig0019465:94917-94936 None:intergenic 50.0%
!! AGGTTGTGTTGGTTGCACTG+AGG - tig0019465:94921-94940 Msa1374090:intron 50.0%
ATCGAGCGAGGAAAGGGAAA+AGG + tig0019465:95022-95041 None:intergenic 50.0%
! TTTTCCCTTTCCTCGCTCGA+TGG - tig0019465:95021-95040 Msa1374090:intron 50.0%
TTTCCCTTTCCTCGCTCGAT+GGG - tig0019465:95022-95041 Msa1374090:intron 50.0%
AAGAATTGTCCCATCGAGCG+AGG + tig0019465:95034-95053 None:intergenic 50.0%
GATTCTCTGGTTGTGACACG+GGG - tig0019465:95355-95374 Msa1374090:five_prime_UTR 50.0%
GGTTCTGCTTCACTTGGAAC+CGG - tig0019465:95405-95424 Msa1374090:five_prime_UTR 50.0%
GACCCCGGAGCAAAAAAATG+AGG + tig0019465:95514-95533 None:intergenic 50.0%
!!! ATTTTTTTGCTCCGGGGTCC+AGG - tig0019465:95515-95534 Msa1374090:five_prime_UTR 50.0%
!!! TTTTTTCGCTCTAGGGCCGA+AGG - tig0019465:95564-95583 Msa1374090:five_prime_UTR 50.0%
!!! TTTTTTCGCTCTAGGGCCGA+AGG - tig0019465:95564-95583 Msa1374090:five_prime_UTR 50.0%
GTGAGAGTGGATGGAGGTTG+AGG + tig0019465:91494-91513 Msa1374080:CDS 55.0%
CACAAAGAGGGGAGGGAATG+TGG + tig0019465:91565-91584 Msa1374080:CDS 55.0%
AGCTTCCTTAACCAGTGCCC+CGG + tig0019465:91812-91831 Msa1374080:CDS 55.0%
TCTTGTTAACCAGTGCCCCG+TGG + tig0019465:91939-91958 Msa1374080:CDS 55.0%
TAGTTAGCAGGAGCAGCCCT+TGG + tig0019465:93536-93555 None:intergenic 55.0%
CGACCATAACGGCGAACTGT+TGG - tig0019465:94490-94509 Msa1374090:CDS 55.0%
CAGCCAACAGTTCGCCGTTA+TGG + tig0019465:94496-94515 None:intergenic 55.0%
CATAACGGCGAACTGTTGGC+TGG - tig0019465:94494-94513 Msa1374090:CDS 55.0%
TGTCCCATCGAGCGAGGAAA+GGG + tig0019465:95028-95047 None:intergenic 55.0%
TTGTCCCATCGAGCGAGGAA+AGG + tig0019465:95029-95048 None:intergenic 55.0%
AGCATCGTCCACCATCTCCT+TGG + tig0019465:95542-95561 None:intergenic 55.0%
! TCTAGGGCCGAAGGATATGG+TGG - tig0019465:95573-95592 Msa1374090:five_prime_UTR 55.0%
TTCCTTAACCAGTGCCCCGG+AGG + tig0019465:91809-91828 Msa1374080:CDS 60.0%
GTGCCCCGTGGCACTAGTTA+AGG + tig0019465:91927-91946 Msa1374080:CDS 60.0%
TAACTAGTGCCACGGGGCAC+TGG - tig0019465:91927-91946 Msa1374090:three_prime_UTR 60.0%
GCTACAAGTGCTCGGCGAGA+TGG + tig0019465:92529-92548 None:intergenic 60.0%
CGAGAGGTCCAAGGCGAATG+CGG - tig0019465:93597-93616 Msa1374090:CDS 60.0%
!! GGGACGGGTTACAGTGGCTT+CGG - tig0019465:93847-93866 Msa1374090:intron 60.0%
ATCTCCTTGGACCTGGACCC+CGG + tig0019465:95529-95548 None:intergenic 60.0%
GTCCAGGTCCAAGGAGATGG+TGG - tig0019465:95531-95550 Msa1374090:five_prime_UTR 60.0%
GTCCACCATCTCCTTGGACC+TGG + tig0019465:95536-95555 None:intergenic 60.0%
!! CGCTCTAGGGCCGAAGGATA+TGG - tig0019465:95570-95589 Msa1374090:five_prime_UTR 60.0%
! TCTAGGGCCGAAGGAGATGG+TGG - tig0019465:95615-95634 Msa1374090:five_prime_UTR 60.0%
!! TGCCTCCGGGGCACTGGTTA+AGG - tig0019465:91804-91823 Msa1374090:three_prime_UTR 65.0%
TGCTCGGCGAGATGGCCAAG+TGG + tig0019465:92521-92540 None:intergenic 65.0%
GGAACATGGTGAGGTCGGGC+AGG + tig0019465:94707-94726 None:intergenic 65.0%
GGGGTCCAGGTCCAAGGAGA+TGG - tig0019465:95528-95547 Msa1374090:five_prime_UTR 65.0%
!! CGCTCTAGGGCCGAAGGAGA+TGG - tig0019465:95612-95631 Msa1374090:five_prime_UTR 65.0%
AACGAGTGCCTCCGGGGCAC+TGG - tig0019465:91798-91817 Msa1374090:three_prime_UTR 70.0%
TGCTCCGGGGTCCAGGTCCA+AGG - tig0019465:95522-95541 Msa1374090:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
tig0019465 gene 91195 95660 91195 ID=Msa1374090;Name=Msa1374090
tig0019465 mRNA 91195 95660 91195 ID=Msa1374090-mRNA-1;Parent=Msa1374090;Name=Msa1374090-mRNA-1;_AED=0.09;_eAED=0.09;_QI=476|1|1|1|0.75|0.6|5|1597|413
tig0019465 exon 91195 93434 91195 ID=Msa1374090-mRNA-1:exon:3725;Parent=Msa1374090-mRNA-1
tig0019465 exon 93519 93651 93519 ID=Msa1374090-mRNA-1:exon:3724;Parent=Msa1374090-mRNA-1
tig0019465 exon 94003 94090 94003 ID=Msa1374090-mRNA-1:exon:3723;Parent=Msa1374090-mRNA-1
tig0019465 exon 94207 94619 94207 ID=Msa1374090-mRNA-1:exon:3722;Parent=Msa1374090-mRNA-1
tig0019465 exon 95220 95660 95220 ID=Msa1374090-mRNA-1:exon:3721;Parent=Msa1374090-mRNA-1
tig0019465 five_prime_UTR 95220 95660 95220 ID=Msa1374090-mRNA-1:five_prime_utr;Parent=Msa1374090-mRNA-1
tig0019465 five_prime_UTR 94585 94619 94585 ID=Msa1374090-mRNA-1:five_prime_utr;Parent=Msa1374090-mRNA-1
tig0019465 CDS 94207 94584 94207 ID=Msa1374090-mRNA-1:cds;Parent=Msa1374090-mRNA-1
tig0019465 CDS 94003 94090 94003 ID=Msa1374090-mRNA-1:cds;Parent=Msa1374090-mRNA-1
tig0019465 CDS 93519 93651 93519 ID=Msa1374090-mRNA-1:cds;Parent=Msa1374090-mRNA-1
tig0019465 CDS 92792 93434 92792 ID=Msa1374090-mRNA-1:cds;Parent=Msa1374090-mRNA-1
tig0019465 three_prime_UTR 91195 92791 91195 ID=Msa1374090-mRNA-1:three_prime_utr;Parent=Msa1374090-mRNA-1
Gene Sequence

>Msa1374090

ATGCCTTTCAAGAGTATTGTGAGAGAGATGAAGGAGATGAAAGAGGGAATTGGCAACATGTATAGAAGAGGTGTAGAAACTAAGCATATGCATAGACATGGAAAATCTCACATAGCACCAGAATGTTCCTCACCAATATCACTATCAGCACCAACAACACCATCATCATCATCATCAGAGAGTCAATGGGCTAATTTACCTCCTGAGTTACTATTAGACATAATTCAAAGGGTGGAAGCTAGTGAAACCACTTGGCCATCTCGCCGAGCACTTGTAGCTTGTGCCTCAGTTTGTAGATTATGGAGAGACATAACAAAGGGTATTGTTAAGACACTTGAACAGTGTGGCTGGATCACTTTCCCTATATCACTGAAGCAGCCTGCTCCAAGAGACAATCCAATTCAGTGTTTTATTAAGAGAGAGAGGGCTACTTCCACATATAGTTTATATCTTGGTCTAAGCCCTGCTCTTTCTGGTGATATGAGCAAACTTCTCTTGGCAGCAAAGAAGATTAGAAGAGCAACATGCACAGAATTTTTAATATCATTGGTTTCTGATGATTTCTCTAGAGCTAACAATACTTACATTGGAAAGTTAAGGTCTAATTTTCTCGGCACCAAGTTCACGATCTTAGATGGTCATCCTCCACATGTTTCTTCGCTTCCATCAAGTTGCAAGTTGCAGCAAAAGGTCCATATGAAGCAAGTACTTCCAAGGGCTGCTCCTGCTAACTATAAAGTAGCAACTGTATCTTACGAACTCAATGTTCTTCGTACGAGAGGTCCAAGGCGAATGCGGAGTACAATGCACTTAATCCCCATATCTTCAGTCCAAGAAGGAGGAACTGCTCCTACTCCTATGGAATTTACCAATTGCCACAATGAGCATGAATCTGCAAAAGAAAAGAAGCCAGAAGTTGTTGAATTTGGCTCAACTTGCACTGATTTTGCAAGAGAGCCTCTGATTTTGAAAAACAAAGCACCAAGATGGCATGAACAACTGCAATGTTGGTGTTTGAATTTCAAGGGACGGGTTACAGTGGCTTCGGTGAAGAATTTTCAGCTTGTAGCAGTTGCAGAACCTAGCCAAAATGTTTCAGCTGCAGAACAAGAAAAAGTTATACTACAATTTGGAAAAATCGGGAAGGACATATTCACCATGGATTATCGATATCCTCTCTCTGCTTTTCAAGCCTTTGCAATCTGTTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA
Protein sequence

>Msa1374090

MPFKSIVREMKEMKEGIGNMYRRGVETKHMHRHGKSHIAPECSSPISLSAPTTPSSSSSESQWANLPPELLLDIIQRVEASETTWPSRRALVACASVCRLWRDITKGIVKTLEQCGWITFPISLKQPAPRDNPIQCFIKRERATSTYSLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVSDDFSRANNTYIGKLRSNFLGTKFTILDGHPPHVSSLPSSCKLQQKVHMKQVLPRAAPANYKVATVSYELNVLRTRGPRRMRSTMHLIPISSVQEGGTAPTPMEFTNCHNEHESAKEKKPEVVEFGSTCTDFAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAVAEPSQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE*