AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0146590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146590 MtrunA17_Chr1g0155611 98.693 306 4 0 1 306 42 347 0.0 623
Msa0146590 MtrunA17_Chr8g0372601 64.052 306 109 1 1 306 26 330 1.34e-142 405
Msa0146590 MtrunA17_Chr5g0404721 62.252 302 113 1 5 306 30 330 9.49e-139 395
Msa0146590 MtrunA17_Chr3g0114451 52.980 302 133 2 5 306 26 318 6.26e-111 324
Msa0146590 MtrunA17_Chr5g0400331 52.614 306 141 2 5 306 26 331 7.24e-109 319
Msa0146590 MtrunA17_Chr3g0106921 52.787 305 132 4 5 306 25 320 1.60e-108 318
Msa0146590 MtrunA17_Chr4g0068621 51.987 302 142 2 5 306 38 336 3.56e-108 318
Msa0146590 MtrunA17_Chr5g0432441 52.941 306 131 4 5 306 30 326 1.67e-107 315
Msa0146590 MtrunA17_Chr4g0013171 51.475 305 137 4 4 306 26 321 2.72e-107 315
Msa0146590 MtrunA17_Chr3g0129051 50.329 304 140 3 5 306 28 322 1.28e-106 313
Msa0146590 MtrunA17_Chr2g0320061 51.656 302 138 2 5 306 25 318 1.32e-105 310
Msa0146590 MtrunA17_Chr2g0320051 51.656 302 138 2 5 306 25 318 1.41e-105 310
Msa0146590 MtrunA17_Chr7g0244461 47.386 306 152 2 1 306 16 312 1.80e-104 307
Msa0146590 MtrunA17_Chr2g0320071 50.331 302 141 2 5 306 25 317 5.98e-104 306
Msa0146590 MtrunA17_Chr2g0292241 49.007 302 154 0 5 306 29 330 1.87e-103 306
Msa0146590 MtrunA17_Chr4g0013181 51.667 300 134 4 9 306 63 353 2.35e-103 306
Msa0146590 MtrunA17_Chr2g0320031 50.000 302 143 2 5 306 26 319 2.72e-103 305
Msa0146590 MtrunA17_Chr2g0292091 48.675 302 155 0 5 306 24 325 3.81e-103 305
Msa0146590 MtrunA17_Chr2g0292251 49.338 302 153 0 5 306 28 329 4.28e-103 305
Msa0146590 MtrunA17_Chr7g0258811 48.185 303 156 1 5 306 69 371 5.14e-103 306
Msa0146590 MtrunA17_Chr5g0438021 49.013 304 144 3 5 306 31 325 1.43e-102 303
Msa0146590 MtrunA17_Chr1g0175561 48.515 303 155 1 5 306 24 326 1.63e-102 303
Msa0146590 MtrunA17_Chr2g0292211 48.344 302 156 0 5 306 40 341 3.08e-102 303
Msa0146590 MtrunA17_Chr2g0292151 49.007 302 154 0 5 306 29 330 4.59e-102 303
Msa0146590 MtrunA17_Chr4g0013201 50.000 302 142 2 5 306 46 338 5.21e-102 302
Msa0146590 MtrunA17_Chr2g0292111 49.338 302 153 0 5 306 29 330 1.59e-101 301
Msa0146590 MtrunA17_Chr2g0320101 49.669 302 143 2 5 306 25 317 1.67e-101 300
Msa0146590 MtrunA17_Chr2g0292101 48.344 302 156 0 5 306 25 326 2.75e-101 300
Msa0146590 MtrunA17_Chr4g0013191 49.508 305 142 4 5 306 45 340 3.61e-101 300
Msa0146590 MtrunA17_Chr2g0292271 48.344 302 156 0 5 306 29 330 8.77e-101 299
Msa0146590 MtrunA17_Chr2g0299691 49.191 309 152 2 1 306 52 358 2.02e-100 299
Msa0146590 MtrunA17_Chr2g0292261 48.675 302 155 0 5 306 29 330 3.46e-100 298
Msa0146590 MtrunA17_Chr2g0292291 49.013 304 152 2 5 306 30 332 4.84e-100 297
Msa0146590 MtrunA17_Chr7g0244451 49.677 310 139 4 1 306 20 316 7.42e-100 296
Msa0146590 MtrunA17_Chr3g0129061 49.013 304 144 3 5 306 28 322 7.50e-100 296
Msa0146590 MtrunA17_Chr5g0432351 47.869 305 148 4 5 306 25 321 3.19e-99 294
Msa0146590 MtrunA17_Chr3g0129041 49.342 304 143 3 5 306 28 322 9.18e-99 293
Msa0146590 MtrunA17_Chr4g0070951 48.355 304 153 2 5 306 28 329 1.05e-98 293
Msa0146590 MtrunA17_Chr2g0292181 47.020 302 160 0 5 306 38 339 1.07e-98 294
Msa0146590 MtrunA17_Chr5g0402571 51.171 299 142 3 9 306 31 326 1.14e-98 293
Msa0146590 MtrunA17_Chr2g0320091 49.175 303 144 3 5 306 25 318 1.34e-98 293
Msa0146590 MtrunA17_Chr5g0432341 47.541 305 149 4 5 306 25 321 1.82e-98 292
Msa0146590 MtrunA17_Chr2g0291751 49.007 302 154 0 5 306 29 330 2.08e-98 293
Msa0146590 MtrunA17_Chr7g0224371 48.658 298 143 3 9 306 35 322 2.20e-97 290
Msa0146590 MtrunA17_Chr5g0421411 48.070 285 145 3 25 306 1 285 6.41e-97 287
Msa0146590 MtrunA17_Chr5g0432331 47.869 305 148 4 5 306 56 352 7.71e-97 289
Msa0146590 MtrunA17_Chr5g0402581 50.167 299 145 3 9 306 31 326 4.30e-96 286
Msa0146590 MtrunA17_Chr4g0038151 47.213 305 150 3 5 306 25 321 3.33e-95 284
Msa0146590 MtrunA17_Chr4g0013721 47.682 302 153 3 5 306 100 396 7.14e-95 286
Msa0146590 MtrunA17_Chr4g0038161 47.213 305 150 3 5 306 24 320 1.09e-94 283
Msa0146590 MtrunA17_Chr4g0043391 46.557 305 153 3 5 306 27 324 2.75e-94 282
Msa0146590 MtrunA17_Chr1g0213061 46.711 304 151 4 5 306 27 321 3.59e-94 282
Msa0146590 MtrunA17_Chr4g0013821 46.557 305 158 3 2 306 25 324 4.82e-94 282
Msa0146590 MtrunA17_Chr3g0106901 48.013 302 148 2 5 306 31 323 2.67e-93 279
Msa0146590 MtrunA17_Chr4g0038171 46.230 305 154 3 5 306 24 321 5.54e-93 278
Msa0146590 MtrunA17_Chr3g0107881 44.918 305 158 3 5 306 27 324 5.22e-90 271
Msa0146590 MtrunA17_Chr1g0204011 45.033 302 160 5 5 306 27 322 3.51e-84 256
Msa0146590 MtrunA17_Chr5g0405991 44.771 306 155 7 4 306 22 316 8.72e-83 252
Msa0146590 MtrunA17_Chr3g0128061 43.813 299 165 3 9 306 30 326 1.57e-82 252
Msa0146590 MtrunA17_Chr6g0477071 43.564 303 158 7 4 306 53 342 1.61e-81 250
Msa0146590 MtrunA17_Chr2g0322861 45.333 300 158 5 9 306 91 386 2.68e-81 251
Msa0146590 MtrunA17_Chr8g0371381 42.951 305 160 7 5 306 26 319 2.08e-80 246
Msa0146590 MtrunA17_Chr4g0076211 44.295 298 155 6 10 306 46 333 4.26e-80 246
Msa0146590 MtrunA17_Chr1g0188431 42.053 302 162 6 5 306 39 327 5.44e-80 245
Msa0146590 MtrunA17_Chr1g0194151 43.377 302 165 3 9 306 34 333 5.58e-79 243
Msa0146590 MtrunA17_Chr2g0279041 43.709 302 159 5 9 306 31 325 7.86e-79 242
Msa0146590 MtrunA17_Chr4g0024121 42.244 303 171 3 5 306 27 326 2.82e-78 241
Msa0146590 MtrunA17_Chr5g0432401 42.105 304 126 4 5 305 29 285 5.52e-77 236
Msa0146590 MtrunA17_Chr1g0157051 42.810 306 166 6 1 305 20 317 1.20e-76 236
Msa0146590 MtrunA17_Chr1g0164891 42.384 302 168 5 9 306 93 392 1.41e-76 239
Msa0146590 MtrunA17_Chr1g0194271 41.456 316 172 4 2 306 27 340 1.66e-76 237
Msa0146590 MtrunA17_Chr7g0268501 42.715 302 167 4 5 306 25 320 1.13e-75 234
Msa0146590 MtrunA17_Chr7g0268521 42.715 302 167 4 5 306 25 320 1.13e-75 234
Msa0146590 MtrunA17_Chr7g0254201 42.617 298 162 6 9 306 24 312 2.39e-75 233
Msa0146590 MtrunA17_Chr2g0296621 42.904 303 161 8 5 306 50 341 2.85e-74 231
Msa0146590 MtrunA17_Chr6g0460711 42.667 300 160 6 9 306 25 314 3.54e-74 230
Msa0146590 MtrunA17_Chr4g0075241 39.297 313 178 5 1 306 20 327 1.42e-71 224
Msa0146590 MtrunA17_Chr7g0254231 41.060 302 166 6 5 306 22 311 6.73e-71 222
Msa0146590 MtrunA17_Chr4g0063671 42.997 307 163 5 5 306 21 320 7.02e-71 222
Msa0146590 MtrunA17_Chr6g0467161 41.830 306 162 6 4 306 44 336 1.87e-70 221
Msa0146590 MtrunA17_Chr7g0225221 38.511 309 170 4 5 306 25 320 3.26e-70 220
Msa0146590 MtrunA17_Chr4g0046131 40.264 303 174 5 5 302 42 342 1.20e-69 219
Msa0146590 MtrunA17_Chr2g0316791 40.841 333 162 7 5 305 76 405 1.21e-68 219
Msa0146590 MtrunA17_Chr2g0316831 40.541 333 163 7 5 305 112 441 2.92e-67 216
Msa0146590 MtrunA17_Chr2g0316481 40.240 333 164 7 5 305 76 405 7.70e-67 214
Msa0146590 MtrunA17_Chr2g0316191 40.120 334 164 7 5 305 76 406 2.96e-66 213
Msa0146590 MtrunA17_Chr2g0311251 39.640 333 165 7 5 305 11 339 1.54e-65 209
Msa0146590 MtrunA17_Chr6g0467121 40.656 305 165 7 4 306 73 363 4.37e-65 209
Msa0146590 MtrunA17_Chr1g0148021 36.721 305 187 4 5 306 27 328 9.20e-64 204
Msa0146590 MtrunA17_Chr5g0401431 36.213 301 187 3 5 302 27 325 1.23e-63 204
Msa0146590 MtrunA17_Chr2g0329641 36.482 307 183 4 5 306 36 335 2.08e-63 203
Msa0146590 MtrunA17_Chr8g0364291 39.344 305 179 5 5 306 23 324 3.00e-63 202
Msa0146590 MtrunA17_Chr6g0467251 39.667 300 170 5 4 302 35 324 1.24e-62 201
Msa0146590 MtrunA17_Chr4g0053871 37.542 301 178 4 5 302 27 320 7.28e-62 199
Msa0146590 MtrunA17_Chr3g0136751 39.145 304 177 4 5 306 25 322 7.74e-62 199
Msa0146590 MtrunA17_Chr2g0311241 35.829 374 163 7 5 305 60 429 5.44e-61 200
Msa0146590 MtrunA17_Chr1g0181431 39.016 305 175 4 5 306 27 323 6.21e-61 196
Msa0146590 MtrunA17_Chr4g0072091 37.582 306 181 5 5 306 24 323 9.64e-61 196
Msa0146590 MtrunA17_Chr1g0197411 37.049 305 187 4 5 306 28 330 1.39e-60 196
Msa0146590 MtrunA17_Chr2g0278671 40.836 311 156 8 9 306 28 323 2.51e-60 195
Msa0146590 MtrunA17_Chr2g0279061 41.985 262 141 5 49 306 12 266 4.79e-60 192
Msa0146590 MtrunA17_Chr1g0181511 38.033 305 178 4 5 306 27 323 8.66e-60 194
Msa0146590 MtrunA17_Chr1g0181481 38.870 301 173 4 9 306 31 323 6.64e-58 189
Msa0146590 MtrunA17_Chr5g0413051 37.500 304 181 7 9 306 77 377 1.62e-57 189
Msa0146590 MtrunA17_Chr3g0114461 47.208 197 94 3 111 306 5 192 7.60e-57 182
Msa0146590 MtrunA17_Chr6g0451571 34.967 306 190 6 5 306 34 334 3.54e-56 184
Msa0146590 MtrunA17_Chr4g0074851 35.948 306 177 5 4 302 31 324 4.34e-53 176
Msa0146590 MtrunA17_Chr4g0004591 34.877 324 149 4 2 305 74 355 6.20e-51 171
Msa0146590 MtrunA17_Chr2g0292281 43.128 211 106 2 98 306 18 216 6.19e-50 166
Msa0146590 MtrunA17_Chr2g0316811 36.491 285 133 6 5 242 50 333 1.95e-46 159
Msa0146590 MtrunA17_Chr2g0316141 35.417 288 132 7 51 305 11 277 8.99e-41 143
Msa0146590 MtrunA17_Chr2g0316181 35.417 288 132 7 51 305 11 277 8.99e-41 143
Msa0146590 MtrunA17_Chr3g0114491 59.633 109 44 0 5 113 18 126 1.39e-39 135
Msa0146590 MtrunA17_Chr3g0104101 46.099 141 73 3 169 306 9 149 3.69e-35 124
Msa0146590 MtrunA17_Chr5g0432321 45.161 124 60 2 126 249 17 132 2.67e-29 108
Msa0146590 MtrunA17_Chr1g0181501 37.245 196 108 5 116 306 4 189 1.52e-28 108
Msa0146590 MtrunA17_Chr6g0468731 64.789 71 21 2 44 114 22 88 6.25e-23 90.9
Msa0146590 MtrunA17_Chr7g0254181 44.762 105 54 2 67 171 22 122 1.46e-21 89.0
Msa0146590 MtrunA17_Chr5g0432361 44.086 93 51 1 213 305 17 108 1.42e-19 82.4
Msa0146590 MtrunA17_Chr2g0316771 32.973 185 90 4 152 305 4 185 3.98e-19 83.6
Msa0146590 MtrunA17_Chr3g0137751 28.839 267 116 8 36 287 105 312 5.58e-19 85.5
Msa0146590 MtrunA17_Chr1g0181491 41.905 105 59 2 5 109 12 114 8.34e-18 78.6
Msa0146590 MtrunA17_Chr4g0013811 49.333 75 38 0 115 189 5 79 8.46e-18 76.6
Msa0146590 MtrunA17_Chr7g0268491 43.023 86 46 2 221 306 15 97 5.23e-15 69.7
Msa0146590 MtrunA17_Chr7g0254171 44.578 83 45 1 48 130 1 82 6.63e-15 70.5
Msa0146590 MtrunA17_Chr1g0196191 40.244 82 44 2 47 124 27 107 4.21e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146590 AT1G44970.1 77.483 302 68 0 5 306 45 346 1.57e-172 481
Msa0146590 AT4G36430.1 60.927 302 117 1 5 306 30 330 2.88e-140 399
Msa0146590 AT2G18150.1 60.927 302 117 1 5 306 36 336 1.10e-139 398
Msa0146590 AT5G66390.1 61.589 302 115 1 5 306 33 333 5.64e-139 396
Msa0146590 AT2G18140.1 57.285 302 128 1 5 306 35 335 4.53e-130 374
Msa0146590 AT3G50990.1 57.616 302 127 1 5 306 41 341 1.01e-125 363
Msa0146590 AT5G06720.1 50.662 302 149 0 5 306 32 333 2.54e-111 326
Msa0146590 AT2G35380.1 53.548 310 124 4 9 306 34 335 5.10e-106 312
Msa0146590 AT5G06730.1 47.682 302 158 0 5 306 33 334 7.91e-105 310
Msa0146590 AT2G38390.1 50.165 303 150 1 5 306 31 333 2.69e-104 308
Msa0146590 AT2G38380.1 49.835 303 151 1 5 306 31 333 3.22e-101 301
Msa0146590 AT5G05340.1 46.711 304 151 3 5 306 30 324 1.89e-100 298
Msa0146590 AT4G16270.1 50.485 309 140 7 1 306 50 348 2.46e-100 298
Msa0146590 AT5G58400.1 48.197 305 146 4 5 306 30 325 3.09e-100 297
Msa0146590 AT5G19890.1 50.000 304 144 4 5 306 30 327 3.44e-100 297
Msa0146590 AT4G08770.1 48.355 304 155 2 5 306 24 327 1.87e-99 296
Msa0146590 AT2G22420.1 48.344 302 151 3 5 306 23 319 2.39e-99 295
Msa0146590 AT4G08780.1 48.026 304 156 2 5 306 24 327 2.53e-99 296
Msa0146590 AT1G49570.1 51.495 301 141 3 5 302 48 346 7.10e-99 295
Msa0146590 AT5G58390.1 50.492 305 139 4 5 306 21 316 1.17e-95 285
Msa0146590 AT3G32980.1 46.711 304 160 2 5 306 31 334 2.22e-95 286
Msa0146590 AT3G49110.1 47.368 304 158 2 5 306 33 336 4.48e-95 285
Msa0146590 AT1G14550.1 48.515 303 148 3 5 306 26 321 2.09e-94 282
Msa0146590 AT1G68850.1 44.118 306 167 3 5 306 30 335 1.92e-93 280
Msa0146590 AT3G49120.1 46.711 304 160 2 5 306 32 335 3.54e-93 280
Msa0146590 AT1G14540.1 45.364 302 158 2 5 306 21 315 1.06e-90 273
Msa0146590 AT3G03670.1 44.482 299 163 2 8 306 26 321 9.42e-88 265
Msa0146590 AT5G19880.1 44.262 305 167 2 5 306 25 329 8.19e-87 263
Msa0146590 AT5G42180.1 45.215 303 157 6 4 305 22 316 4.77e-83 253
Msa0146590 AT5G64120.1 43.960 298 159 5 9 306 39 328 6.50e-83 253
Msa0146590 AT5G51890.1 44.262 305 161 6 4 306 25 322 1.21e-82 252
Msa0146590 AT5G17820.1 41.946 298 161 5 9 306 28 313 4.49e-82 251
Msa0146590 AT1G05260.1 44.224 303 165 4 5 306 26 325 1.38e-81 250
Msa0146590 AT5G17820.2 41.946 298 161 5 9 306 81 366 7.57e-81 249
Msa0146590 AT1G71695.1 44.444 306 158 6 4 306 43 339 1.33e-80 248
Msa0146590 AT2G35380.2 51.765 255 103 4 64 306 1 247 1.61e-80 244
Msa0146590 AT4G33420.1 43.894 303 157 6 4 306 36 325 9.63e-79 243
Msa0146590 AT4G33420.2 43.894 303 157 6 4 306 83 372 3.74e-78 243
Msa0146590 AT4G11290.1 43.333 300 166 3 9 306 29 326 3.93e-78 241
Msa0146590 AT3G21770.1 42.857 301 164 5 5 302 29 324 5.26e-77 238
Msa0146590 AT5G15180.1 43.092 304 167 5 4 306 31 329 1.85e-76 237
Msa0146590 AT1G05240.1 41.196 301 169 5 5 302 26 321 1.23e-73 229
Msa0146590 AT1G05250.1 41.196 301 169 5 5 302 26 321 1.23e-73 229
Msa0146590 AT2G41480.1 42.904 303 161 5 9 306 33 328 3.17e-73 228
Msa0146590 AT5G39580.1 42.475 299 163 6 9 306 29 319 4.12e-73 228
Msa0146590 AT3G01190.1 40.984 305 174 5 2 306 23 321 3.69e-71 223
Msa0146590 AT4G26010.1 41.137 299 160 6 9 306 26 309 4.28e-71 223
Msa0146590 AT4G26010.2 41.137 299 160 6 9 306 54 337 9.27e-71 223
Msa0146590 AT2G18980.1 40.000 305 174 4 5 306 25 323 2.63e-70 221
Msa0146590 AT4G25980.1 40.924 303 168 5 9 306 30 326 7.11e-70 220
Msa0146590 AT2G39040.1 42.395 309 167 6 5 306 46 350 1.21e-69 220
Msa0146590 AT4G30170.1 39.032 310 178 5 1 306 23 325 2.10e-69 219
Msa0146590 AT4G33870.1 37.048 332 171 4 9 305 72 400 7.88e-69 219
Msa0146590 AT1G30870.1 41.967 305 164 7 5 306 51 345 7.88e-68 215
Msa0146590 AT5G64100.1 40.199 301 167 7 9 306 41 331 1.60e-67 214
Msa0146590 AT5G64110.1 41.528 301 165 5 9 306 38 330 1.64e-67 214
Msa0146590 AT4G37530.1 38.889 306 180 4 5 306 27 329 3.84e-66 210
Msa0146590 AT4G31760.1 40.065 307 176 3 2 306 26 326 5.72e-66 210
Msa0146590 AT4G37520.1 36.877 301 185 3 5 302 27 325 2.71e-64 206
Msa0146590 AT3G49960.1 36.393 305 189 3 5 306 27 329 7.00e-64 204
Msa0146590 AT5G40150.1 40.461 304 172 5 5 306 32 328 7.10e-64 204
Msa0146590 AT5G47000.1 38.636 308 173 7 5 306 33 330 3.64e-63 203
Msa0146590 AT1G77100.1 39.604 303 167 6 9 306 28 319 1.73e-62 201
Msa0146590 AT4G37520.2 36.545 301 183 4 5 302 27 322 1.93e-62 201
Msa0146590 AT5G67400.1 36.721 305 188 3 5 306 27 329 7.73e-62 199
Msa0146590 AT2G34060.1 38.033 305 180 7 5 303 42 343 9.14e-62 199
Msa0146590 AT3G28200.1 37.500 304 180 4 5 306 21 316 3.07e-60 195
Msa0146590 AT2G24800.1 39.016 305 177 5 5 306 31 329 4.86e-60 194
Msa0146590 AT4G17690.1 37.377 305 180 5 5 306 26 322 5.60e-60 194
Msa0146590 AT1G24110.1 37.908 306 181 7 5 306 22 322 6.73e-60 194
Msa0146590 AT5G14130.1 35.314 303 191 4 5 306 32 330 7.82e-59 191
Msa0146590 AT1G34510.1 37.458 299 171 6 9 306 26 309 1.24e-58 191
Msa0146590 AT5G14130.2 35.314 303 191 4 5 306 73 371 2.10e-58 192
Msa0146590 AT5G22410.1 38.000 300 172 8 9 303 32 322 1.41e-57 188
Msa0146590 AT2G43480.1 35.599 309 184 6 5 306 35 335 4.00e-57 187
Msa0146590 AT2G37130.2 38.079 302 175 5 9 306 3 296 7.24e-57 186
Msa0146590 AT3G17070.1 36.306 314 178 7 4 306 37 339 7.60e-57 187
Msa0146590 AT2G37130.1 37.908 306 178 5 5 306 30 327 1.23e-56 186
Msa0146590 AT5G24070.1 34.177 316 187 6 4 306 28 335 2.00e-56 186
Msa0146590 AT4G37530.2 38.281 256 155 2 2 254 24 279 3.17e-56 183
Msa0146590 AT4G21960.1 37.742 310 174 5 4 306 30 327 6.32e-56 184
Msa0146590 AT4G25980.2 48.171 164 81 3 9 172 75 234 5.54e-44 152
Msa0146590 AT3G17070.2 34.686 271 154 8 47 306 18 276 1.89e-42 147
Msa0146590 AT5G39580.2 45.455 165 85 3 9 173 29 188 2.28e-39 138
Msa0146590 AT2G24800.2 38.614 202 109 3 5 206 31 217 7.64e-37 132
Msa0146590 AT4G32320.1 30.337 267 112 8 36 287 114 321 2.07e-20 90.1
Msa0146590 AT3G42570.1 35.052 97 62 1 77 172 53 149 2.51e-13 67.0
Msa0146590 AT4G08390.2 26.394 269 144 10 39 288 127 360 2.21e-12 67.4
Msa0146590 AT4G08390.5 26.394 269 144 10 39 288 127 360 2.21e-12 67.4
Msa0146590 AT4G08390.1 26.394 269 144 10 39 288 127 360 2.21e-12 67.4
Msa0146590 AT4G08390.3 26.394 269 144 10 39 288 126 359 2.34e-12 67.4
Msa0146590 AT1G77490.2 25.573 262 155 10 39 288 106 339 6.00e-11 63.2
Msa0146590 AT1G77490.1 25.573 262 155 10 39 288 106 339 6.12e-11 63.2

Find 78 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGTTGGTTGTTTCCATTT+TGG 0.258817 1_4:+6279193 None:intergenic
CCTAAGTAAGAGTTTGTAAT+AGG 0.274011 1_4:+6279056 None:intergenic
ACCACTAGAGGAATGTCTTT+TGG 0.298662 1_4:-6280441 Msa0146590:exon
CCTATTACAAACTCTTACTT+AGG 0.320265 1_4:-6279056 Msa0146590:CDS
CAAAGACTATACAACCAAAA+TGG 0.350393 1_4:-6279207 Msa0146590:CDS
ATTATTTCTCCCTTGGACTT+TGG 0.351191 1_4:-6279102 Msa0146590:CDS
AGGTATTATCAAACATTCTT+GGG 0.352062 1_4:+6279076 None:intergenic
TTTGAGTCTCTCCTTCCTAA+TGG 0.355118 1_4:+6279516 None:intergenic
TAGGTATTATCAAACATTCT+TGG 0.367240 1_4:+6279075 None:intergenic
GCCTTGTCTATGATCAAGTT+GGG 0.368870 1_4:-6278922 Msa0146590:CDS
TTTGGCTGGGGTGGTCATCA+TGG 0.381646 1_4:-6280468 Msa0146590:five_prime_UTR
AGACCTTCAATAGTTGCATT+TGG 0.390969 1_4:+6279453 None:intergenic
CCACCAAATGCAACTATTGA+AGG 0.405803 1_4:-6279456 Msa0146590:CDS
GTAGACCTTGTTGCCCTCTC+AGG 0.409416 1_4:-6279396 Msa0146590:intron
TATTGTTGCCCTTGCTGCTA+GGG 0.421519 1_4:-6279824 Msa0146590:CDS
ATATTGTTGCCCTTGCTGCT+AGG 0.427899 1_4:-6279825 Msa0146590:CDS
AAACTCTTACTTAGGGGAAA+AGG 0.433563 1_4:-6279048 Msa0146590:CDS
CTATTACAAACTCTTACTTA+GGG 0.433600 1_4:-6279055 Msa0146590:CDS
TGACAACATTATTTCTCCCT+TGG 0.436794 1_4:-6279109 Msa0146590:CDS
AACAGAGTGGAGGACCCAAC+TGG 0.440175 1_4:-6279545 Msa0146590:intron
ATGTTGTCACCACCTGATCT+TGG 0.448426 1_4:+6279123 None:intergenic
AAATCAATGTGCCCAAGATC+AGG 0.449302 1_4:-6279135 Msa0146590:CDS
TCCTAATGGTAGCTCCCAGT+TGG 0.462642 1_4:+6279530 None:intergenic
GGGAACCTTCGTCCTCTCAC+TGG 0.462709 1_4:-6278901 Msa0146590:CDS
CCTTCAATAGTTGCATTTGG+TGG 0.468155 1_4:+6279456 None:intergenic
GCTTCTCACGGGGAATGTTA+AGG 0.470744 1_4:-6279004 Msa0146590:CDS
TGCCTTGTCTATGATCAAGT+TGG 0.474042 1_4:-6278923 Msa0146590:CDS
AATGTAGGTGCACATACAAT+TGG 0.478313 1_4:-6279255 Msa0146590:intron
TGATGAGATCAAATCTAAGT+TGG 0.478968 1_4:-6279881 Msa0146590:CDS
TGTTGTCACCACCTGATCTT+GGG 0.480354 1_4:+6279124 None:intergenic
TTTCTAGATTCGAATCTGGT+TGG 0.488001 1_4:+6279178 None:intergenic
CTTCAATAGTTGCATTTGGT+GGG 0.492398 1_4:+6279457 None:intergenic
TGACATTGTCATGTCAGTCT+TGG 0.493447 1_4:-6280376 Msa0146590:CDS
CCTAATGGTAGCTCCCAGTT+GGG 0.500426 1_4:+6279531 None:intergenic
TCAATAGTTGCATTTGGTGG+GGG 0.508864 1_4:+6279459 None:intergenic
TTCAATAGTTGCATTTGGTG+GGG 0.518047 1_4:+6279458 None:intergenic
TGACAATGTCATTAGCTTGA+GGG 0.524979 1_4:+6280388 None:intergenic
CCCAACTGGGAGCTACCATT+AGG 0.529796 1_4:-6279531 Msa0146590:CDS
TCAGATGAAGTGCTTCTCAC+GGG 0.531970 1_4:-6279015 Msa0146590:CDS
CTTCCACGACTGCTTCGTGC+AGG 0.531991 1_4:-6280301 Msa0146590:intron
TTTGAAAGTTCCACCTGAGA+GGG 0.537314 1_4:+6279383 None:intergenic
TCTGCACATGAGACTGTATG+AGG 0.537536 1_4:+6279847 None:intergenic
CATGAAAACTGATAGAATTG+AGG 0.540572 1_4:+6280411 None:intergenic
CCAAAGTGAAAATCATGGAC+AGG 0.542594 1_4:+6280486 None:intergenic
TTCAGATGAAGTGCTTCTCA+CGG 0.542726 1_4:-6279016 Msa0146590:CDS
TCTTGGGGAGCCAAAGTCCA+AGG 0.548432 1_4:+6279092 None:intergenic
CCCAGCCAAAGTGAAAATCA+TGG 0.562562 1_4:+6280481 None:intergenic
ATTGTTGCCCTTGCTGCTAG+GGG 0.562619 1_4:-6279823 Msa0146590:CDS
GGCTGGGGTGGTCATCATGG+TGG 0.563986 1_4:-6280465 Msa0146590:five_prime_UTR
TGTTAAGGAGACTCGTGACT+TGG 0.564179 1_4:-6278989 Msa0146590:CDS
CTTGGAGAAGGCCATTGCTA+AGG 0.567799 1_4:-6280358 Msa0146590:CDS
AATCATGGACAGGATGAGCA+TGG 0.575254 1_4:+6280496 None:intergenic
ATCATGGACAGGATGAGCAT+GGG 0.575357 1_4:+6280497 None:intergenic
TCCAAAAGACATTCCTCTAG+TGG 0.581773 1_4:+6280440 None:intergenic
AGTGGATCCCCTAGCAGCAA+GGG 0.584231 1_4:+6279816 None:intergenic
CCTTGTCTATGATCAAGTTG+GGG 0.590007 1_4:-6278921 Msa0146590:CDS
ATGACAATGTCATTAGCTTG+AGG 0.594591 1_4:+6280387 None:intergenic
CAACAAGGTCTACTTCATCA+AGG 0.594873 1_4:+6279406 None:intergenic
CAGTGGATCCCCTAGCAGCA+AGG 0.596237 1_4:+6279815 None:intergenic
CATCATGGTGGAACCACTAG+AGG 0.601048 1_4:-6280453 Msa0146590:five_prime_UTR
TTACCTGCACGAAGCAGTCG+TGG 0.601762 1_4:+6280298 None:intergenic
AATCACTTCAAAACCTCGGA+CGG 0.602593 1_4:+6279903 None:intergenic
GGTATTATCAAACATTCTTG+GGG 0.603868 1_4:+6279077 None:intergenic
CCCCAACTTGATCATAGACA+AGG 0.616517 1_4:+6278921 None:intergenic
ACAGAGTGGAGGACCCAACT+GGG 0.620032 1_4:-6279544 Msa0146590:intron
TGTCATGTCAGTCTTGGAGA+AGG 0.621040 1_4:-6280370 Msa0146590:CDS
CATCAATCACTTCAAAACCT+CGG 0.621498 1_4:+6279899 None:intergenic
TATTACAAACTCTTACTTAG+GGG 0.623907 1_4:-6279054 Msa0146590:CDS
ATTTGAAAGTTCCACCTGAG+AGG 0.625792 1_4:+6279382 None:intergenic
ACTGGGAGCTACCATTAGGA+AGG 0.630159 1_4:-6279527 Msa0146590:CDS
TATTCTGATATCCTTAGCAA+TGG 0.632717 1_4:+6280347 None:intergenic
TTCCACCTGAGAGGGCAACA+AGG 0.641016 1_4:+6279391 None:intergenic
CTTGGGGAGCCAAAGTCCAA+GGG 0.659085 1_4:+6279093 None:intergenic
TCAATGTGCCCAAGATCAGG+TGG 0.661889 1_4:-6279132 Msa0146590:CDS
CAGATGAAGTGCTTCTCACG+GGG 0.668421 1_4:-6279014 Msa0146590:CDS
TCGCCATTAAAACCAGTGAG+AGG 0.697253 1_4:+6278889 None:intergenic
TAAAACCAGTGAGAGGACGA+AGG 0.705812 1_4:+6278896 None:intergenic
AGGTGCACATACAATTGGTG+TGG 0.734240 1_4:-6279250 Msa0146590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTATGTTTTACTTG+CGG + chr1_4:6279220-6279239 None:intergenic 15.0%
!!! TTTATTTTACTTTTAATGAC+AGG - chr1_4:6279366-6279385 Msa0146590:intron 15.0%
!!! TTATTTTACTTTTAATGACA+GGG - chr1_4:6279367-6279386 Msa0146590:intron 15.0%
!!! AACAATTTTTTAATAGACTA+TGG - chr1_4:6279690-6279709 Msa0146590:intron 15.0%
!!! ATTATTTTATGTTTTACTTG+CGG + chr1_4:6279220-6279239 None:intergenic 15.0%
!!! TTTATTTTACTTTTAATGAC+AGG - chr1_4:6279366-6279385 Msa0146590:intron 15.0%
!!! TTATTTTACTTTTAATGACA+GGG - chr1_4:6279367-6279386 Msa0146590:intron 15.0%
!!! AACAATTTTTTAATAGACTA+TGG - chr1_4:6279690-6279709 Msa0146590:intron 15.0%
!!! TTTTTTCTCTCAAAATTTGT+TGG + chr1_4:6279290-6279309 None:intergenic 20.0%
!!! CTAGAAAAAACATTTTACTT+TGG - chr1_4:6280205-6280224 Msa0146590:intron 20.0%
!!! TTTTTTCTCTCAAAATTTGT+TGG + chr1_4:6279290-6279309 None:intergenic 20.0%
!!! CTAGAAAAAACATTTTACTT+TGG - chr1_4:6280205-6280224 Msa0146590:intron 20.0%
! ACAATTGTCAGTGAAAAAAA+TGG - chr1_4:6279424-6279443 Msa0146590:CDS 25.0%
!!! TTTTTTTCTTACAAGAACAG+TGG + chr1_4:6279572-6279591 None:intergenic 25.0%
! CATGCAAAGTATATAAAAGT+TGG + chr1_4:6279619-6279638 None:intergenic 25.0%
!!! AATATTCTTTTGAAACAGAG+TGG - chr1_4:6279809-6279828 Msa0146590:intron 25.0%
! TGTAACACTAATAGAAAATG+TGG + chr1_4:6280017-6280036 None:intergenic 25.0%
! AGGTATTATCAAACATTCTT+GGG + chr1_4:6280294-6280313 None:intergenic 25.0%
! TAGGTATTATCAAACATTCT+TGG + chr1_4:6280295-6280314 None:intergenic 25.0%
! CTATTACAAACTCTTACTTA+GGG - chr1_4:6280312-6280331 Msa0146590:CDS 25.0%
! TATTACAAACTCTTACTTAG+GGG - chr1_4:6280313-6280332 Msa0146590:CDS 25.0%
! ACAATTGTCAGTGAAAAAAA+TGG - chr1_4:6279424-6279443 Msa0146590:CDS 25.0%
!!! TTTTTTTCTTACAAGAACAG+TGG + chr1_4:6279572-6279591 None:intergenic 25.0%
! CATGCAAAGTATATAAAAGT+TGG + chr1_4:6279619-6279638 None:intergenic 25.0%
!!! AATATTCTTTTGAAACAGAG+TGG - chr1_4:6279809-6279828 Msa0146590:intron 25.0%
! TGTAACACTAATAGAAAATG+TGG + chr1_4:6280017-6280036 None:intergenic 25.0%
! AGGTATTATCAAACATTCTT+GGG + chr1_4:6280294-6280313 None:intergenic 25.0%
! TAGGTATTATCAAACATTCT+TGG + chr1_4:6280295-6280314 None:intergenic 25.0%
! CTATTACAAACTCTTACTTA+GGG - chr1_4:6280312-6280331 Msa0146590:CDS 25.0%
! TATTACAAACTCTTACTTAG+GGG - chr1_4:6280313-6280332 Msa0146590:CDS 25.0%
CATGAAAACTGATAGAATTG+AGG + chr1_4:6278959-6278978 None:intergenic 30.0%
TATTCTGATATCCTTAGCAA+TGG + chr1_4:6279023-6279042 None:intergenic 30.0%
! GCAATACATGTTCTAAATAC+AGG - chr1_4:6279107-6279126 Msa0146590:CDS 30.0%
TTAAGTCTTTGCATTTGTAC+CGG - chr1_4:6279153-6279172 Msa0146590:CDS 30.0%
CTTGATGTTATATCGAAGTA+CGG + chr1_4:6279189-6279208 None:intergenic 30.0%
CAAATTAAGAACGTGTATTC+AGG + chr1_4:6279267-6279286 None:intergenic 30.0%
ATTGTCAGTGAAAAAAATGG+TGG - chr1_4:6279427-6279446 Msa0146590:CDS 30.0%
TGATGAGATCAAATCTAAGT+TGG - chr1_4:6279486-6279505 Msa0146590:CDS 30.0%
ACTTTGCATGTCATATACTA+AGG - chr1_4:6279629-6279648 Msa0146590:intron 30.0%
CTTTGCATGTCATATACTAA+GGG - chr1_4:6279630-6279649 Msa0146590:intron 30.0%
TTTGCATGTCATATACTAAG+GGG - chr1_4:6279631-6279650 Msa0146590:intron 30.0%
!!! TTAACATTTTTCAAGCGTCA+AGG - chr1_4:6279938-6279957 Msa0146590:CDS 30.0%
! AGATCGTCACTTTATAATGT+AGG - chr1_4:6280097-6280116 Msa0146590:intron 30.0%
CAAAGACTATACAACCAAAA+TGG - chr1_4:6280160-6280179 Msa0146590:intron 30.0%
!!! GTTTTTTCTAGATTCGAATC+TGG + chr1_4:6280196-6280215 None:intergenic 30.0%
GGTATTATCAAACATTCTTG+GGG + chr1_4:6280293-6280312 None:intergenic 30.0%
CCTAAGTAAGAGTTTGTAAT+AGG + chr1_4:6280314-6280333 None:intergenic 30.0%
CCTATTACAAACTCTTACTT+AGG - chr1_4:6280311-6280330 Msa0146590:CDS 30.0%
CATGAAAACTGATAGAATTG+AGG + chr1_4:6278959-6278978 None:intergenic 30.0%
TATTCTGATATCCTTAGCAA+TGG + chr1_4:6279023-6279042 None:intergenic 30.0%
! GCAATACATGTTCTAAATAC+AGG - chr1_4:6279107-6279126 Msa0146590:CDS 30.0%
TTAAGTCTTTGCATTTGTAC+CGG - chr1_4:6279153-6279172 Msa0146590:CDS 30.0%
CTTGATGTTATATCGAAGTA+CGG + chr1_4:6279189-6279208 None:intergenic 30.0%
CAAATTAAGAACGTGTATTC+AGG + chr1_4:6279267-6279286 None:intergenic 30.0%
ATTGTCAGTGAAAAAAATGG+TGG - chr1_4:6279427-6279446 Msa0146590:CDS 30.0%
TGATGAGATCAAATCTAAGT+TGG - chr1_4:6279486-6279505 Msa0146590:CDS 30.0%
ACTTTGCATGTCATATACTA+AGG - chr1_4:6279629-6279648 Msa0146590:intron 30.0%
CTTTGCATGTCATATACTAA+GGG - chr1_4:6279630-6279649 Msa0146590:intron 30.0%
TTTGCATGTCATATACTAAG+GGG - chr1_4:6279631-6279650 Msa0146590:intron 30.0%
!!! TTAACATTTTTCAAGCGTCA+AGG - chr1_4:6279938-6279957 Msa0146590:CDS 30.0%
! AGATCGTCACTTTATAATGT+AGG - chr1_4:6280097-6280116 Msa0146590:intron 30.0%
CAAAGACTATACAACCAAAA+TGG - chr1_4:6280160-6280179 Msa0146590:intron 30.0%
!!! GTTTTTTCTAGATTCGAATC+TGG + chr1_4:6280196-6280215 None:intergenic 30.0%
GGTATTATCAAACATTCTTG+GGG + chr1_4:6280293-6280312 None:intergenic 30.0%
CCTAAGTAAGAGTTTGTAAT+AGG + chr1_4:6280314-6280333 None:intergenic 30.0%
CCTATTACAAACTCTTACTT+AGG - chr1_4:6280311-6280330 Msa0146590:CDS 30.0%
! TGACAATGTCATTAGCTTGA+GGG + chr1_4:6278982-6279001 None:intergenic 35.0%
! ATGACAATGTCATTAGCTTG+AGG + chr1_4:6278983-6279002 None:intergenic 35.0%
TTAAGAACGTGTATTCAGGA+AGG + chr1_4:6279263-6279282 None:intergenic 35.0%
! TCTTTTGCATGCATATGTCA+AGG - chr1_4:6279327-6279346 Msa0146590:intron 35.0%
CATCAATCACTTCAAAACCT+CGG + chr1_4:6279471-6279490 None:intergenic 35.0%
!!! ATTCTTTTGAAACAGAGTGG+AGG - chr1_4:6279812-6279831 Msa0146590:CDS 35.0%
!! TGTTTTTGTTTGATCCCCTT+AGG + chr1_4:6279886-6279905 None:intergenic 35.0%
! TTCAATAGTTGCATTTGGTG+GGG + chr1_4:6279912-6279931 None:intergenic 35.0%
CTTCAATAGTTGCATTTGGT+GGG + chr1_4:6279913-6279932 None:intergenic 35.0%
AGACCTTCAATAGTTGCATT+TGG + chr1_4:6279917-6279936 None:intergenic 35.0%
AATGTAGGTGCACATACAAT+TGG - chr1_4:6280112-6280131 Msa0146590:intron 35.0%
TTTCTAGATTCGAATCTGGT+TGG + chr1_4:6280192-6280211 None:intergenic 35.0%
! TGACAACATTATTTCTCCCT+TGG - chr1_4:6280258-6280277 Msa0146590:intron 35.0%
! ATTATTTCTCCCTTGGACTT+TGG - chr1_4:6280265-6280284 Msa0146590:intron 35.0%
AAACTCTTACTTAGGGGAAA+AGG - chr1_4:6280319-6280338 Msa0146590:CDS 35.0%
! TGACAATGTCATTAGCTTGA+GGG + chr1_4:6278982-6279001 None:intergenic 35.0%
! ATGACAATGTCATTAGCTTG+AGG + chr1_4:6278983-6279002 None:intergenic 35.0%
TTAAGAACGTGTATTCAGGA+AGG + chr1_4:6279263-6279282 None:intergenic 35.0%
! TCTTTTGCATGCATATGTCA+AGG - chr1_4:6279327-6279346 Msa0146590:intron 35.0%
CATCAATCACTTCAAAACCT+CGG + chr1_4:6279471-6279490 None:intergenic 35.0%
!!! ATTCTTTTGAAACAGAGTGG+AGG - chr1_4:6279812-6279831 Msa0146590:CDS 35.0%
!! TGTTTTTGTTTGATCCCCTT+AGG + chr1_4:6279886-6279905 None:intergenic 35.0%
! TTCAATAGTTGCATTTGGTG+GGG + chr1_4:6279912-6279931 None:intergenic 35.0%
CTTCAATAGTTGCATTTGGT+GGG + chr1_4:6279913-6279932 None:intergenic 35.0%
AGACCTTCAATAGTTGCATT+TGG + chr1_4:6279917-6279936 None:intergenic 35.0%
AATGTAGGTGCACATACAAT+TGG - chr1_4:6280112-6280131 Msa0146590:intron 35.0%
TTTCTAGATTCGAATCTGGT+TGG + chr1_4:6280192-6280211 None:intergenic 35.0%
! TGACAACATTATTTCTCCCT+TGG - chr1_4:6280258-6280277 Msa0146590:intron 35.0%
! ATTATTTCTCCCTTGGACTT+TGG - chr1_4:6280265-6280284 Msa0146590:intron 35.0%
AAACTCTTACTTAGGGGAAA+AGG - chr1_4:6280319-6280338 Msa0146590:CDS 35.0%
CCAAAGTGAAAATCATGGAC+AGG + chr1_4:6278884-6278903 None:intergenic 40.0%
! CCTGTCCATGATTTTCACTT+TGG - chr1_4:6278881-6278900 Msa0146590:CDS 40.0%
! TCCATGATTTTCACTTTGGC+TGG - chr1_4:6278885-6278904 Msa0146590:CDS 40.0%
! CCATGATTTTCACTTTGGCT+GGG - chr1_4:6278886-6278905 Msa0146590:CDS 40.0%
! CATGATTTTCACTTTGGCTG+GGG - chr1_4:6278887-6278906 Msa0146590:CDS 40.0%
! ACCACTAGAGGAATGTCTTT+TGG - chr1_4:6278926-6278945 Msa0146590:CDS 40.0%
TCCAAAAGACATTCCTCTAG+TGG + chr1_4:6278930-6278949 None:intergenic 40.0%
TGACATTGTCATGTCAGTCT+TGG - chr1_4:6278991-6279010 Msa0146590:CDS 40.0%
! CTGCGATGCATCAATTTTGT+TGG - chr1_4:6279390-6279409 Msa0146590:intron 40.0%
AATCACTTCAAAACCTCGGA+CGG + chr1_4:6279467-6279486 None:intergenic 40.0%
AGAGACAAACACACACATCT+AGG + chr1_4:6279753-6279772 None:intergenic 40.0%
TTTGAGTCTCTCCTTCCTAA+TGG + chr1_4:6279854-6279873 None:intergenic 40.0%
! ACTCAAAAACAGCTAGCCTA+AGG - chr1_4:6279867-6279886 Msa0146590:CDS 40.0%
! CTCAAAAACAGCTAGCCTAA+GGG - chr1_4:6279868-6279887 Msa0146590:CDS 40.0%
! TCAAAAACAGCTAGCCTAAG+GGG - chr1_4:6279869-6279888 Msa0146590:CDS 40.0%
! TCAATAGTTGCATTTGGTGG+GGG + chr1_4:6279911-6279930 None:intergenic 40.0%
CCTTCAATAGTTGCATTTGG+TGG + chr1_4:6279914-6279933 None:intergenic 40.0%
CCACCAAATGCAACTATTGA+AGG - chr1_4:6279911-6279930 Msa0146590:CDS 40.0%
CAACAAGGTCTACTTCATCA+AGG + chr1_4:6279964-6279983 None:intergenic 40.0%
TTTGAAAGTTCCACCTGAGA+GGG + chr1_4:6279987-6280006 None:intergenic 40.0%
ATTTGAAAGTTCCACCTGAG+AGG + chr1_4:6279988-6280007 None:intergenic 40.0%
!! CTGGTTGGTTGTTTCCATTT+TGG + chr1_4:6280177-6280196 None:intergenic 40.0%
AAATCAATGTGCCCAAGATC+AGG - chr1_4:6280232-6280251 Msa0146590:intron 40.0%
! TTCAGATGAAGTGCTTCTCA+CGG - chr1_4:6280351-6280370 Msa0146590:CDS 40.0%
TGCCTTGTCTATGATCAAGT+TGG - chr1_4:6280444-6280463 Msa0146590:exon 40.0%
GCCTTGTCTATGATCAAGTT+GGG - chr1_4:6280445-6280464 Msa0146590:exon 40.0%
! CCTTGTCTATGATCAAGTTG+GGG - chr1_4:6280446-6280465 Msa0146590:exon 40.0%
CCAAAGTGAAAATCATGGAC+AGG + chr1_4:6278884-6278903 None:intergenic 40.0%
! CCTGTCCATGATTTTCACTT+TGG - chr1_4:6278881-6278900 Msa0146590:CDS 40.0%
! TCCATGATTTTCACTTTGGC+TGG - chr1_4:6278885-6278904 Msa0146590:CDS 40.0%
! CCATGATTTTCACTTTGGCT+GGG - chr1_4:6278886-6278905 Msa0146590:CDS 40.0%
! CATGATTTTCACTTTGGCTG+GGG - chr1_4:6278887-6278906 Msa0146590:CDS 40.0%
! ACCACTAGAGGAATGTCTTT+TGG - chr1_4:6278926-6278945 Msa0146590:CDS 40.0%
TCCAAAAGACATTCCTCTAG+TGG + chr1_4:6278930-6278949 None:intergenic 40.0%
TGACATTGTCATGTCAGTCT+TGG - chr1_4:6278991-6279010 Msa0146590:CDS 40.0%
! CTGCGATGCATCAATTTTGT+TGG - chr1_4:6279390-6279409 Msa0146590:intron 40.0%
AATCACTTCAAAACCTCGGA+CGG + chr1_4:6279467-6279486 None:intergenic 40.0%
AGAGACAAACACACACATCT+AGG + chr1_4:6279753-6279772 None:intergenic 40.0%
TTTGAGTCTCTCCTTCCTAA+TGG + chr1_4:6279854-6279873 None:intergenic 40.0%
! ACTCAAAAACAGCTAGCCTA+AGG - chr1_4:6279867-6279886 Msa0146590:CDS 40.0%
! CTCAAAAACAGCTAGCCTAA+GGG - chr1_4:6279868-6279887 Msa0146590:CDS 40.0%
! TCAAAAACAGCTAGCCTAAG+GGG - chr1_4:6279869-6279888 Msa0146590:CDS 40.0%
! TCAATAGTTGCATTTGGTGG+GGG + chr1_4:6279911-6279930 None:intergenic 40.0%
CCTTCAATAGTTGCATTTGG+TGG + chr1_4:6279914-6279933 None:intergenic 40.0%
CCACCAAATGCAACTATTGA+AGG - chr1_4:6279911-6279930 Msa0146590:CDS 40.0%
CAACAAGGTCTACTTCATCA+AGG + chr1_4:6279964-6279983 None:intergenic 40.0%
TTTGAAAGTTCCACCTGAGA+GGG + chr1_4:6279987-6280006 None:intergenic 40.0%
ATTTGAAAGTTCCACCTGAG+AGG + chr1_4:6279988-6280007 None:intergenic 40.0%
!! CTGGTTGGTTGTTTCCATTT+TGG + chr1_4:6280177-6280196 None:intergenic 40.0%
AAATCAATGTGCCCAAGATC+AGG - chr1_4:6280232-6280251 Msa0146590:intron 40.0%
! TTCAGATGAAGTGCTTCTCA+CGG - chr1_4:6280351-6280370 Msa0146590:CDS 40.0%
TGCCTTGTCTATGATCAAGT+TGG - chr1_4:6280444-6280463 Msa0146590:exon 40.0%
GCCTTGTCTATGATCAAGTT+GGG - chr1_4:6280445-6280464 Msa0146590:exon 40.0%
! CCTTGTCTATGATCAAGTTG+GGG - chr1_4:6280446-6280465 Msa0146590:exon 40.0%
ATCATGGACAGGATGAGCAT+GGG + chr1_4:6278873-6278892 None:intergenic 45.0%
AATCATGGACAGGATGAGCA+TGG + chr1_4:6278874-6278893 None:intergenic 45.0%
CCCAGCCAAAGTGAAAATCA+TGG + chr1_4:6278889-6278908 None:intergenic 45.0%
TGTCATGTCAGTCTTGGAGA+AGG - chr1_4:6278997-6279016 Msa0146590:CDS 45.0%
GAAGTACGGTCAAATGTGTC+CGG + chr1_4:6279175-6279194 None:intergenic 45.0%
! CCTCGGACGGAATTTTTGTT+AGG + chr1_4:6279454-6279473 None:intergenic 45.0%
CCTAACAAAAATTCCGTCCG+AGG - chr1_4:6279451-6279470 Msa0146590:CDS 45.0%
TCTGCACATGAGACTGTATG+AGG + chr1_4:6279523-6279542 None:intergenic 45.0%
ATATTGTTGCCCTTGCTGCT+AGG - chr1_4:6279542-6279561 Msa0146590:CDS 45.0%
TATTGTTGCCCTTGCTGCTA+GGG - chr1_4:6279543-6279562 Msa0146590:CDS 45.0%
AGGTGCACATACAATTGGTG+TGG - chr1_4:6280117-6280136 Msa0146590:intron 45.0%
TGTTGTCACCACCTGATCTT+GGG + chr1_4:6280246-6280265 None:intergenic 45.0%
ATGTTGTCACCACCTGATCT+TGG + chr1_4:6280247-6280266 None:intergenic 45.0%
! TCAGATGAAGTGCTTCTCAC+GGG - chr1_4:6280352-6280371 Msa0146590:CDS 45.0%
TGTTAAGGAGACTCGTGACT+TGG - chr1_4:6280378-6280397 Msa0146590:CDS 45.0%
CCCCAACTTGATCATAGACA+AGG + chr1_4:6280449-6280468 None:intergenic 45.0%
TAAAACCAGTGAGAGGACGA+AGG + chr1_4:6280474-6280493 None:intergenic 45.0%
!!! CGTCCTCTCACTGGTTTTAA+TGG - chr1_4:6280475-6280494 Msa0146590:five_prime_UTR 45.0%
TCGCCATTAAAACCAGTGAG+AGG + chr1_4:6280481-6280500 None:intergenic 45.0%
ATCATGGACAGGATGAGCAT+GGG + chr1_4:6278873-6278892 None:intergenic 45.0%
AATCATGGACAGGATGAGCA+TGG + chr1_4:6278874-6278893 None:intergenic 45.0%
CCCAGCCAAAGTGAAAATCA+TGG + chr1_4:6278889-6278908 None:intergenic 45.0%
TGTCATGTCAGTCTTGGAGA+AGG - chr1_4:6278997-6279016 Msa0146590:CDS 45.0%
GAAGTACGGTCAAATGTGTC+CGG + chr1_4:6279175-6279194 None:intergenic 45.0%
! CCTCGGACGGAATTTTTGTT+AGG + chr1_4:6279454-6279473 None:intergenic 45.0%
CCTAACAAAAATTCCGTCCG+AGG - chr1_4:6279451-6279470 Msa0146590:CDS 45.0%
TCTGCACATGAGACTGTATG+AGG + chr1_4:6279523-6279542 None:intergenic 45.0%
ATATTGTTGCCCTTGCTGCT+AGG - chr1_4:6279542-6279561 Msa0146590:CDS 45.0%
TATTGTTGCCCTTGCTGCTA+GGG - chr1_4:6279543-6279562 Msa0146590:CDS 45.0%
AGGTGCACATACAATTGGTG+TGG - chr1_4:6280117-6280136 Msa0146590:intron 45.0%
TGTTGTCACCACCTGATCTT+GGG + chr1_4:6280246-6280265 None:intergenic 45.0%
ATGTTGTCACCACCTGATCT+TGG + chr1_4:6280247-6280266 None:intergenic 45.0%
! TCAGATGAAGTGCTTCTCAC+GGG - chr1_4:6280352-6280371 Msa0146590:CDS 45.0%
TGTTAAGGAGACTCGTGACT+TGG - chr1_4:6280378-6280397 Msa0146590:CDS 45.0%
CCCCAACTTGATCATAGACA+AGG + chr1_4:6280449-6280468 None:intergenic 45.0%
TAAAACCAGTGAGAGGACGA+AGG + chr1_4:6280474-6280493 None:intergenic 45.0%
!!! CGTCCTCTCACTGGTTTTAA+TGG - chr1_4:6280475-6280494 Msa0146590:five_prime_UTR 45.0%
TCGCCATTAAAACCAGTGAG+AGG + chr1_4:6280481-6280500 None:intergenic 45.0%
! GATTTTCACTTTGGCTGGGG+TGG - chr1_4:6278890-6278909 Msa0146590:CDS 50.0%
! CATCATGGTGGAACCACTAG+AGG - chr1_4:6278914-6278933 Msa0146590:CDS 50.0%
CTTGGAGAAGGCCATTGCTA+AGG - chr1_4:6279009-6279028 Msa0146590:CDS 50.0%
AGGTCTGAGTCGCGACATAA+AGG - chr1_4:6279127-6279146 Msa0146590:CDS 50.0%
ATTGTTGCCCTTGCTGCTAG+GGG - chr1_4:6279544-6279563 Msa0146590:intron 50.0%
CCTAATGGTAGCTCCCAGTT+GGG + chr1_4:6279839-6279858 None:intergenic 50.0%
TCCTAATGGTAGCTCCCAGT+TGG + chr1_4:6279840-6279859 None:intergenic 50.0%
ACTGGGAGCTACCATTAGGA+AGG - chr1_4:6279840-6279859 Msa0146590:CDS 50.0%
TCAATGTGCCCAAGATCAGG+TGG - chr1_4:6280235-6280254 Msa0146590:intron 50.0%
! CAGATGAAGTGCTTCTCACG+GGG - chr1_4:6280353-6280372 Msa0146590:CDS 50.0%
GCTTCTCACGGGGAATGTTA+AGG - chr1_4:6280363-6280382 Msa0146590:CDS 50.0%
! GATTTTCACTTTGGCTGGGG+TGG - chr1_4:6278890-6278909 Msa0146590:CDS 50.0%
! CATCATGGTGGAACCACTAG+AGG - chr1_4:6278914-6278933 Msa0146590:CDS 50.0%
CTTGGAGAAGGCCATTGCTA+AGG - chr1_4:6279009-6279028 Msa0146590:CDS 50.0%
AGGTCTGAGTCGCGACATAA+AGG - chr1_4:6279127-6279146 Msa0146590:CDS 50.0%
ATTGTTGCCCTTGCTGCTAG+GGG - chr1_4:6279544-6279563 Msa0146590:intron 50.0%
CCTAATGGTAGCTCCCAGTT+GGG + chr1_4:6279839-6279858 None:intergenic 50.0%
TCCTAATGGTAGCTCCCAGT+TGG + chr1_4:6279840-6279859 None:intergenic 50.0%
ACTGGGAGCTACCATTAGGA+AGG - chr1_4:6279840-6279859 Msa0146590:CDS 50.0%
TCAATGTGCCCAAGATCAGG+TGG - chr1_4:6280235-6280254 Msa0146590:intron 50.0%
! CAGATGAAGTGCTTCTCACG+GGG - chr1_4:6280353-6280372 Msa0146590:CDS 50.0%
GCTTCTCACGGGGAATGTTA+AGG - chr1_4:6280363-6280382 Msa0146590:CDS 50.0%
TTTGGCTGGGGTGGTCATCA+TGG - chr1_4:6278899-6278918 Msa0146590:CDS 55.0%
TTACCTGCACGAAGCAGTCG+TGG + chr1_4:6279072-6279091 None:intergenic 55.0%
AGTGGATCCCCTAGCAGCAA+GGG + chr1_4:6279554-6279573 None:intergenic 55.0%
AACAGAGTGGAGGACCCAAC+TGG - chr1_4:6279822-6279841 Msa0146590:CDS 55.0%
ACAGAGTGGAGGACCCAACT+GGG - chr1_4:6279823-6279842 Msa0146590:CDS 55.0%
CCCAACTGGGAGCTACCATT+AGG - chr1_4:6279836-6279855 Msa0146590:CDS 55.0%
GTAGACCTTGTTGCCCTCTC+AGG - chr1_4:6279971-6279990 Msa0146590:CDS 55.0%
TTCCACCTGAGAGGGCAACA+AGG + chr1_4:6279979-6279998 None:intergenic 55.0%
CTTGGGGAGCCAAAGTCCAA+GGG + chr1_4:6280277-6280296 None:intergenic 55.0%
TCTTGGGGAGCCAAAGTCCA+AGG + chr1_4:6280278-6280297 None:intergenic 55.0%
TTTGGCTGGGGTGGTCATCA+TGG - chr1_4:6278899-6278918 Msa0146590:CDS 55.0%
TTACCTGCACGAAGCAGTCG+TGG + chr1_4:6279072-6279091 None:intergenic 55.0%
AGTGGATCCCCTAGCAGCAA+GGG + chr1_4:6279554-6279573 None:intergenic 55.0%
AACAGAGTGGAGGACCCAAC+TGG - chr1_4:6279822-6279841 Msa0146590:CDS 55.0%
ACAGAGTGGAGGACCCAACT+GGG - chr1_4:6279823-6279842 Msa0146590:CDS 55.0%
CCCAACTGGGAGCTACCATT+AGG - chr1_4:6279836-6279855 Msa0146590:CDS 55.0%
GTAGACCTTGTTGCCCTCTC+AGG - chr1_4:6279971-6279990 Msa0146590:CDS 55.0%
TTCCACCTGAGAGGGCAACA+AGG + chr1_4:6279979-6279998 None:intergenic 55.0%
CTTGGGGAGCCAAAGTCCAA+GGG + chr1_4:6280277-6280296 None:intergenic 55.0%
TCTTGGGGAGCCAAAGTCCA+AGG + chr1_4:6280278-6280297 None:intergenic 55.0%
CTTCCACGACTGCTTCGTGC+AGG - chr1_4:6279066-6279085 Msa0146590:CDS 60.0%
CAGTGGATCCCCTAGCAGCA+AGG + chr1_4:6279555-6279574 None:intergenic 60.0%
GACCTTGTTGCCCTCTCAGG+TGG - chr1_4:6279974-6279993 Msa0146590:CDS 60.0%
GGGAACCTTCGTCCTCTCAC+TGG - chr1_4:6280466-6280485 Msa0146590:five_prime_UTR 60.0%
CTTCCACGACTGCTTCGTGC+AGG - chr1_4:6279066-6279085 Msa0146590:CDS 60.0%
CAGTGGATCCCCTAGCAGCA+AGG + chr1_4:6279555-6279574 None:intergenic 60.0%
GACCTTGTTGCCCTCTCAGG+TGG - chr1_4:6279974-6279993 Msa0146590:CDS 60.0%
GGGAACCTTCGTCCTCTCAC+TGG - chr1_4:6280466-6280485 Msa0146590:five_prime_UTR 60.0%
GGCTGGGGTGGTCATCATGG+TGG - chr1_4:6278902-6278921 Msa0146590:CDS 65.0%
GGCTGGGGTGGTCATCATGG+TGG - chr1_4:6278902-6278921 Msa0146590:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 6278861 6280528 6278861 ID=Msa0146590;Name=Msa0146590
chr1_4 mRNA 6278861 6280528 6278861 ID=Msa0146590-mRNA-1;Parent=Msa0146590;Name=Msa0146590-mRNA-1;_AED=0.13;_eAED=0.14;_QI=77|0|0|1|1|0.75|4|0|306
chr1_4 exon 6280302 6280528 6280302 ID=Msa0146590-mRNA-1:exon:2762;Parent=Msa0146590-mRNA-1
chr1_4 exon 6279810 6280001 6279810 ID=Msa0146590-mRNA-1:exon:2761;Parent=Msa0146590-mRNA-1
chr1_4 exon 6279397 6279562 6279397 ID=Msa0146590-mRNA-1:exon:2760;Parent=Msa0146590-mRNA-1
chr1_4 exon 6278861 6279270 6278861 ID=Msa0146590-mRNA-1:exon:2759;Parent=Msa0146590-mRNA-1
chr1_4 five_prime_UTR 6280452 6280528 6280452 ID=Msa0146590-mRNA-1:five_prime_utr;Parent=Msa0146590-mRNA-1
chr1_4 CDS 6280302 6280451 6280302 ID=Msa0146590-mRNA-1:cds;Parent=Msa0146590-mRNA-1
chr1_4 CDS 6279810 6280001 6279810 ID=Msa0146590-mRNA-1:cds;Parent=Msa0146590-mRNA-1
chr1_4 CDS 6279397 6279562 6279397 ID=Msa0146590-mRNA-1:cds;Parent=Msa0146590-mRNA-1
chr1_4 CDS 6278861 6279270 6278861 ID=Msa0146590-mRNA-1:cds;Parent=Msa0146590-mRNA-1
Gene Sequence

>Msa0146590

ATGTCTTTTGGACTTTCTCCTCAATTCTATCAGTTTTCATGCCCTCAAGCTAATGACATTGTCATGTCAGTCTTGGAGAAGGCCATTGCTAAGGATATCAGAATAGCAGCTTCTCTTCTTCGACTTCACTTCCACGACTGCTTCGTGCAGGGCTGCGATGCATCAATTTTGTTGGACGACAGCGCTACAATTGTCAGTGAAAAAAATGGTGGACCTAACAAAAATTCCGTCCGAGGTTTTGAAGTGATTGATGAGATCAAATCTAAGTTGGAACAAGCATGTCCTCATACAGTCTCATGTGCAGATATTGTTGCCCTTGCTGCTAGGGGATCCACTGTTCTTAGTGGAGGACCCAACTGGGAGCTACCATTAGGAAGGAGAGACTCAAAAACAGCTAGCCTAAGGGGATCAAACAAAAACATTCCCCCACCAAATGCAACTATTGAAGGTCTCTTAACATTTTTCAAGCGTCAAGGCCTTGATGAAGTAGACCTTGTTGCCCTCTCAGGTGCACATACAATTGGTGTGGCAAAATGTGCAACATTCAAGCAAAGACTATACAACCAAAATGGAAACAACCAACCAGATTCGAATCTAGAAAAAACATTTTACTTTGGTTTGAAATCAATGTGCCCAAGATCAGGTGGTGACAACATTATTTCTCCCTTGGACTTTGGCTCCCCAAGAATGTTTGATAATACCTATTACAAACTCTTACTTAGGGGAAAAGGATTGCTTAATTCAGATGAAGTGCTTCTCACGGGGAATGTTAAGGAGACTCGTGACTTGGTGAAGAAATATGCACAAGATGAGAGTCTCTTCTTTCAACAATTTGCCTTGTCTATGATCAAGTTGGGGAACCTTCGTCCTCTCACTGGTTTTAATGGCGAAGTTAGAAAGAATTGTCGTCGAGTTAAT
Protein sequence

>Msa0146590

MSFGLSPQFYQFSCPQANDIVMSVLEKAIAKDIRIAASLLRLHFHDCFVQGCDASILLDDSATIVSEKNGGPNKNSVRGFEVIDEIKSKLEQACPHTVSCADIVALAARGSTVLSGGPNWELPLGRRDSKTASLRGSNKNIPPPNATIEGLLTFFKRQGLDEVDLVALSGAHTIGVAKCATFKQRLYNQNGNNQPDSNLEKTFYFGLKSMCPRSGGDNIISPLDFGSPRMFDNTYYKLLLRGKGLLNSDEVLLTGNVKETRDLVKKYAQDESLFFQQFALSMIKLGNLRPLTGFNGEVRKNCRRVN