Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147080 | XP_003589468.1 | 93.529 | 340 | 12 | 1 | 1 | 330 | 1 | 340 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147080 | sp|Q8LE10|HA22I_ARATH | 52.134 | 328 | 119 | 7 | 1 | 326 | 1 | 292 | 2.71e-96 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147080 | G7I756 | 93.529 | 340 | 12 | 1 | 1 | 330 | 1 | 340 | 0.0 | 574 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0058130 | Msa0147080 | 0.834894 | 2.301688e-56 | -8.615850e-47 |
| Msa0147080 | Msa0576330 | 0.803012 | 4.270829e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147080 | MtrunA17_Chr1g0156501 | 93.529 | 340 | 12 | 1 | 1 | 330 | 1 | 340 | 0.0 | 574 |
| Msa0147080 | MtrunA17_Chr3g0142571 | 59.517 | 331 | 86 | 6 | 1 | 330 | 1 | 284 | 1.84e-120 | 348 |
| Msa0147080 | MtrunA17_Chr1g0177871 | 44.211 | 190 | 87 | 2 | 1 | 190 | 1 | 171 | 4.77e-57 | 185 |
| Msa0147080 | MtrunA17_Chr7g0267131 | 50.345 | 145 | 72 | 0 | 1 | 145 | 1 | 145 | 1.24e-54 | 177 |
| Msa0147080 | MtrunA17_Chr5g0403731 | 32.632 | 95 | 62 | 1 | 15 | 109 | 37 | 129 | 1.84e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147080 | AT5G42560.1 | 52.134 | 328 | 119 | 7 | 1 | 326 | 1 | 292 | 2.75e-97 | 290 |
| Msa0147080 | AT1G19950.1 | 47.353 | 340 | 139 | 6 | 1 | 328 | 1 | 312 | 6.90e-91 | 274 |
| Msa0147080 | AT5G42560.3 | 51.266 | 316 | 116 | 7 | 13 | 326 | 2 | 281 | 7.43e-91 | 273 |
| Msa0147080 | AT5G42560.2 | 51.266 | 316 | 116 | 7 | 13 | 326 | 2 | 281 | 7.43e-91 | 273 |
| Msa0147080 | AT1G75700.1 | 64.103 | 156 | 56 | 0 | 1 | 156 | 1 | 156 | 1.41e-78 | 238 |
| Msa0147080 | AT1G75700.2 | 64.103 | 156 | 56 | 0 | 1 | 156 | 1 | 156 | 1.41e-78 | 238 |
| Msa0147080 | AT1G75700.3 | 54.054 | 185 | 56 | 1 | 1 | 156 | 1 | 185 | 8.22e-72 | 221 |
| Msa0147080 | AT2G36020.1 | 50.955 | 157 | 77 | 0 | 1 | 157 | 1 | 157 | 4.89e-59 | 191 |
| Msa0147080 | AT4G36720.1 | 29.032 | 93 | 64 | 2 | 15 | 107 | 45 | 135 | 1.56e-11 | 63.2 |
Find 121 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAAGCTCCGATCAATTTC+TGG | 0.157517 | 1_4:+6938526 | None:intergenic |
| GGAAGTAAAAGAGGAGTTAT+TGG | 0.203411 | 1_4:-6937504 | Msa0147080:CDS |
| TCCTCTTCAGCAACTGAAAA+TGG | 0.204563 | 1_4:-6937221 | Msa0147080:CDS |
| CAGATGAAGGATTAGACTTC+TGG | 0.208821 | 1_4:+6937312 | None:intergenic |
| AATCGAAGCTGTTCAATTTC+CGG | 0.211353 | 1_4:+6939014 | None:intergenic |
| CCGAATACTTTCTTCCATTC+TGG | 0.228086 | 1_4:+6937175 | None:intergenic |
| ATAATTATATACCTTTGTTT+TGG | 0.244409 | 1_4:+6938679 | None:intergenic |
| AAATTGAACAGCTTCGATTT+TGG | 0.251242 | 1_4:-6939010 | Msa0147080:CDS |
| GTCGATGTTTAGCCGGAAAT+AGG | 0.254113 | 1_4:-6937095 | Msa0147080:three_prime_UTR |
| GCTGTTGATTCAATATTCTT+AGG | 0.269355 | 1_4:+6937251 | None:intergenic |
| AAAGTAGCCCCTCCTGTTGC+AGG | 0.293457 | 1_4:-6937464 | Msa0147080:CDS |
| GTTATAATTAAGCCGTAATT+TGG | 0.300625 | 1_4:-6940320 | Msa0147080:five_prime_UTR |
| TGGTCCAACTACCCTATTTC+CGG | 0.300661 | 1_4:+6937083 | None:intergenic |
| CTAGACAAATTCATATTAAA+AGG | 0.308467 | 1_4:+6937007 | None:intergenic |
| CGTTACATAACGCTTTAAAA+TGG | 0.322148 | 1_4:+6937063 | None:intergenic |
| GCGGCTGGTTGGCCCTTGGC+AGG | 0.329188 | 1_4:+6937596 | None:intergenic |
| ACAATATTGCATACCAATAC+TGG | 0.331896 | 1_4:+6938985 | None:intergenic |
| CCAGAATGGAAGAAAGTATT+CGG | 0.341573 | 1_4:-6937175 | Msa0147080:CDS |
| GGTTGGCCCTTGGCAGGTGC+AGG | 0.343393 | 1_4:+6937602 | None:intergenic |
| GGCGGTGGCGGTGGCGGTGG+CGG | 0.352902 | 1_4:+6940086 | None:intergenic |
| TCTGGCGGTGGCGGTGGCGG+TGG | 0.364369 | 1_4:+6940083 | None:intergenic |
| ATGATAATTGTTTCAGATGA+AGG | 0.367093 | 1_4:+6937299 | None:intergenic |
| CTACTAGTGACCGAGCGATT+AGG | 0.367306 | 1_4:+6940293 | None:intergenic |
| ATTGAAAAGCAACAATTTAA+CGG | 0.368642 | 1_4:-6940219 | Msa0147080:five_prime_UTR |
| TACTAGTGACCGAGCGATTA+GGG | 0.375400 | 1_4:+6940294 | None:intergenic |
| TTTCAGGGATACAGAATGAT+AGG | 0.376443 | 1_4:-6939324 | Msa0147080:intron |
| AAAGCGTTATGTAACGGTTT+CGG | 0.381129 | 1_4:-6937056 | Msa0147080:three_prime_UTR |
| GGTGGCGGTGGCGGTGGCGG+TGG | 0.385615 | 1_4:+6940089 | None:intergenic |
| GCAACAGGAGGGGCTACTTT+AGG | 0.385854 | 1_4:+6937467 | None:intergenic |
| TTTACGAGATGAGGTGAATC+TGG | 0.392073 | 1_4:+6940065 | None:intergenic |
| AACCAGCTATAGGAGGCTTC+TGG | 0.393471 | 1_4:+6937372 | None:intergenic |
| GAATCTGGCGGTGGCGGTGG+CGG | 0.396709 | 1_4:+6940080 | None:intergenic |
| AAGCAGCTAAAGGAGGCTTC+TGG | 0.402533 | 1_4:+6937402 | None:intergenic |
| TCGATGTTTAGCCGGAAATA+GGG | 0.403077 | 1_4:-6937094 | Msa0147080:three_prime_UTR |
| CTACTGGGTTCCTACTGATC+TGG | 0.407544 | 1_4:+6937127 | None:intergenic |
| GGTGGCGGTGGCGGTGGTTG+AGG | 0.408395 | 1_4:+6940095 | None:intergenic |
| TGAGTAGTTAAACCAGCTAT+AGG | 0.410981 | 1_4:+6937362 | None:intergenic |
| CGATTAGGGTGACCAAATTA+CGG | 0.421750 | 1_4:+6940308 | None:intergenic |
| GGTGAATCTGGCGGTGGCGG+TGG | 0.424382 | 1_4:+6940077 | None:intergenic |
| ATTGCAGCAACGACCGGGAC+CGG | 0.424962 | 1_4:-6937642 | Msa0147080:intron |
| AATGTATTGTGAAGCTAAGT+TGG | 0.425208 | 1_4:-6938726 | Msa0147080:CDS |
| ATGACAGTGTGTGAGAGATT+TGG | 0.431821 | 1_4:-6938861 | Msa0147080:CDS |
| TGCAACATATGGTTTAAAGA+AGG | 0.441591 | 1_4:+6938558 | None:intergenic |
| TGTTTGTTTAAACCTGCAAC+AGG | 0.458598 | 1_4:+6937452 | None:intergenic |
| TGAGGTGAATCTGGCGGTGG+CGG | 0.461958 | 1_4:+6940074 | None:intergenic |
| AGCAGCGGCTGGTTGGCCCT+TGG | 0.466244 | 1_4:+6937592 | None:intergenic |
| AGATGAAGGATTAGACTTCT+GGG | 0.473622 | 1_4:+6937313 | None:intergenic |
| TGTGGTTCTGTAGCAGCGGC+TGG | 0.474161 | 1_4:+6937581 | None:intergenic |
| AGAGGAAAAGTAACAGAAGA+AGG | 0.475526 | 1_4:+6940183 | None:intergenic |
| TGATAGGATCCTTTCTTACC+TGG | 0.479771 | 1_4:-6939308 | Msa0147080:CDS |
| TCTCAAAGAGCTGTTAGTTA+CGG | 0.482414 | 1_4:-6938463 | Msa0147080:CDS |
| CACAAGCGCCCAGGTAAGAA+AGG | 0.483813 | 1_4:+6939299 | None:intergenic |
| GTTCCAAAAGGAAGTAAAAG+AGG | 0.484315 | 1_4:-6937513 | Msa0147080:CDS |
| CAGAATGGAAGAAAGTATTC+GGG | 0.484520 | 1_4:-6937174 | Msa0147080:CDS |
| AACCAGAAGCCTCCTATAGC+TGG | 0.489915 | 1_4:-6937374 | Msa0147080:CDS |
| ACTTAGCTTCACAATACATT+GGG | 0.490800 | 1_4:+6938729 | None:intergenic |
| TTAGCCGGAAATAGGGTAGT+TGG | 0.493270 | 1_4:-6937087 | Msa0147080:three_prime_UTR |
| TGGTTATTTAAAGCAGCTAA+AGG | 0.494168 | 1_4:+6937392 | None:intergenic |
| CTTGAAATTGCAGCAACGAC+CGG | 0.494610 | 1_4:-6937648 | Msa0147080:intron |
| CATCGGCTCTTCTGTATAGC+AGG | 0.496045 | 1_4:-6936918 | Msa0147080:three_prime_UTR |
| CTTGAAGTTGTGCTAGAGGC+AGG | 0.497182 | 1_4:+6937539 | None:intergenic |
| GTTCTGTAGCAGCGGCTGGT+TGG | 0.499552 | 1_4:+6937585 | None:intergenic |
| ATCGGAGCTTGTCGGAACTA+AGG | 0.500483 | 1_4:-6938516 | Msa0147080:CDS |
| CAAAATTGTCGATGTTTAGC+CGG | 0.503945 | 1_4:-6937102 | Msa0147080:three_prime_UTR |
| GTTGTGCTAGAGGCAGGAGA+TGG | 0.506091 | 1_4:+6937545 | None:intergenic |
| GTGAAGGATTGCGTTGTTGT+CGG | 0.511963 | 1_4:+6940149 | None:intergenic |
| ACCTGAGCGGACTGAGGTGC+TGG | 0.512203 | 1_4:+6938391 | None:intergenic |
| TAATTTGTATTAAATTTGAT+CGG | 0.513046 | 1_4:+6940349 | None:intergenic |
| TCGTAAACCTGCACCTGCCA+AGG | 0.519991 | 1_4:-6937609 | Msa0147080:CDS |
| TTGTGCTAGAGGCAGGAGAT+GGG | 0.523724 | 1_4:+6937546 | None:intergenic |
| AACTTCAAGTCAGTTCCAAA+AGG | 0.529032 | 1_4:-6937525 | Msa0147080:CDS |
| GGGGCTACTTTAGGAGCTTG+TGG | 0.533157 | 1_4:+6937476 | None:intergenic |
| ACCAGCACCTCAGTCCGCTC+AGG | 0.534486 | 1_4:-6938392 | Msa0147080:intron |
| TGTAAAGGAGGAGACCAGAA+TGG | 0.537004 | 1_4:-6937189 | Msa0147080:CDS |
| AAGAAAGTATTCGGGTTACA+CGG | 0.537361 | 1_4:-6937166 | Msa0147080:CDS |
| TTGAAATTGCAGCAACGACC+GGG | 0.537573 | 1_4:-6937647 | Msa0147080:intron |
| ATAGCATTCATACGCTGGAT+AGG | 0.541233 | 1_4:+6939058 | None:intergenic |
| TTGCAGCAACGACCGGGACC+GGG | 0.545537 | 1_4:-6937641 | Msa0147080:intron |
| GATGGGATGGATATTTGCAT+CGG | 0.545657 | 1_4:-6936935 | Msa0147080:three_prime_UTR |
| AGGAAGATCGGCGACGGCGA+AGG | 0.548045 | 1_4:+6940115 | None:intergenic |
| AACTTAGCTTCACAATACAT+TGG | 0.551621 | 1_4:+6938728 | None:intergenic |
| AGAAAGTATTCGGGTTACAC+GGG | 0.556108 | 1_4:-6937165 | Msa0147080:CDS |
| CGGTCACTAGTAGAGTTGCT+TGG | 0.556674 | 1_4:-6940283 | Msa0147080:five_prime_UTR |
| TGGAAAATCTCTTGTAAAGG+AGG | 0.556796 | 1_4:-6937201 | Msa0147080:CDS |
| AAATGGAAAATCTCTTGTAA+AGG | 0.557309 | 1_4:-6937204 | Msa0147080:CDS |
| TGGCGGTGGTTGAGGAAGAT+CGG | 0.567526 | 1_4:+6940103 | None:intergenic |
| ACTTTATAGCATTCATACGC+TGG | 0.570495 | 1_4:+6939053 | None:intergenic |
| AGTAGTTGAAAAGAATAAGC+CGG | 0.571678 | 1_4:-6939033 | Msa0147080:CDS |
| TGTTTAAACCTGCAACAGGA+GGG | 0.572742 | 1_4:+6937456 | None:intergenic |
| CGAACTCTCACACCCGGTCC+CGG | 0.573418 | 1_4:+6937629 | None:intergenic |
| GTTTAAACCTGCAACAGGAG+GGG | 0.575918 | 1_4:+6937457 | None:intergenic |
| CGTAAACCTGCACCTGCCAA+GGG | 0.577276 | 1_4:-6937608 | Msa0147080:CDS |
| AACATGAGCCAGAAATTGAT+CGG | 0.579657 | 1_4:-6938534 | Msa0147080:CDS |
| TCGGAACTAAGGACAAGGGC+GGG | 0.580754 | 1_4:-6938505 | Msa0147080:CDS |
| GAAGGAAAATGCGACGGTGA+AGG | 0.581687 | 1_4:+6940133 | None:intergenic |
| TTGTTTAAACCTGCAACAGG+AGG | 0.583194 | 1_4:+6937455 | None:intergenic |
| TTGTCGGTGAGAGATGAAAG+AGG | 0.584021 | 1_4:+6940165 | None:intergenic |
| GTTATTTAAAGCAGCTACAG+AGG | 0.587763 | 1_4:+6937424 | None:intergenic |
| AATATGAATTTGTCTAGGCA+CGG | 0.588086 | 1_4:-6937001 | Msa0147080:three_prime_UTR |
| GATAGGATCCTTTCTTACCT+GGG | 0.588549 | 1_4:-6939307 | Msa0147080:CDS |
| GTGCTAGAGGCAGGAGATGG+GGG | 0.593522 | 1_4:+6937548 | None:intergenic |
| AGATGAGGTGAATCTGGCGG+TGG | 0.593735 | 1_4:+6940071 | None:intergenic |
| AACTTGTGGTTCTGTAGCAG+CGG | 0.597787 | 1_4:+6937577 | None:intergenic |
| GTAGTTAAACCAGCTATAGG+AGG | 0.599048 | 1_4:+6937365 | None:intergenic |
| TGTGCTAGAGGCAGGAGATG+GGG | 0.599849 | 1_4:+6937547 | None:intergenic |
| ATTTGGTCACCCTAATCGCT+CGG | 0.615390 | 1_4:-6940303 | Msa0147080:five_prime_UTR |
| CTGACTTGAAGTTGTGCTAG+AGG | 0.618717 | 1_4:+6937535 | None:intergenic |
| TTTGTGGTACCCCAAAACAA+AGG | 0.623782 | 1_4:-6938690 | Msa0147080:intron |
| TTATTTAAAGCAGCTAAAGG+AGG | 0.632428 | 1_4:+6937395 | None:intergenic |
| TGAAACTTACACAAGCGCCC+AGG | 0.634837 | 1_4:+6939290 | None:intergenic |
| GCTTGTCGGAACTAAGGACA+AGG | 0.640010 | 1_4:-6938510 | Msa0147080:CDS |
| AGAAATTGATCGGAGCTTGT+CGG | 0.643569 | 1_4:-6938524 | Msa0147080:CDS |
| TGAACTACCTGAGCGGACTG+AGG | 0.646512 | 1_4:+6938385 | None:intergenic |
| GTCGGAACTAAGGACAAGGG+CGG | 0.652471 | 1_4:-6938506 | Msa0147080:CDS |
| ACGAGATGAGGTGAATCTGG+CGG | 0.662325 | 1_4:+6940068 | None:intergenic |
| GGTTTACGAACTCTCACACC+CGG | 0.663395 | 1_4:+6937623 | None:intergenic |
| TGGTTGAGGAAGATCGGCGA+CGG | 0.664626 | 1_4:+6940109 | None:intergenic |
| GACGGCGAAGGAAAATGCGA+CGG | 0.670353 | 1_4:+6940127 | None:intergenic |
| GAAAGTATTCGGGTTACACG+GGG | 0.677731 | 1_4:-6937164 | Msa0147080:CDS |
| ATCATAATGAACTACCTGAG+CGG | 0.709859 | 1_4:+6938378 | None:intergenic |
| CTTGTCGGAACTAAGGACAA+GGG | 0.728246 | 1_4:-6938509 | Msa0147080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTGTATTAAATTTGAT+CGG | + | chr1_4:6936838-6936857 | None:intergenic | 10.0% |
| !!! | ATTTATTTTTATTTTTTGAG+AGG | - | chr1_4:6937546-6937565 | Msa0147080:CDS | 10.0% |
| !!! | TATTCATTTAGAATATAGTT+CGG | - | chr1_4:6937308-6937327 | Msa0147080:CDS | 15.0% |
| !!! | TATCTTTGATTTTTAATTTC+AGG | - | chr1_4:6937844-6937863 | Msa0147080:intron | 15.0% |
| !!! | ATCTTTGATTTTTAATTTCA+GGG | - | chr1_4:6937845-6937864 | Msa0147080:intron | 15.0% |
| !!! | TAATTATATACCTTTGTTTT+GGG | + | chr1_4:6938507-6938526 | None:intergenic | 15.0% |
| !!! | ATAATTATATACCTTTGTTT+TGG | + | chr1_4:6938508-6938527 | None:intergenic | 15.0% |
| !! | ATTGAAAAGCAACAATTTAA+CGG | - | chr1_4:6936965-6936984 | Msa0147080:three_prime_UTR | 20.0% |
| !! | AGAAAAAAAAAACAATCATC+AGG | + | chr1_4:6937365-6937384 | None:intergenic | 20.0% |
| !! | GATATGATAATAATATCCAA+TGG | + | chr1_4:6937696-6937715 | None:intergenic | 20.0% |
| !!! | TAATGATTTTATTTGTCCTT+TGG | - | chr1_4:6938075-6938094 | Msa0147080:intron | 20.0% |
| !!! | AATTATATACCTTTGTTTTG+GGG | + | chr1_4:6938506-6938525 | None:intergenic | 20.0% |
| !!! | AGGTATATAATTATTTTCTG+TGG | - | chr1_4:6938514-6938533 | Msa0147080:CDS | 20.0% |
| !! | GATATGTTAAGAGAATAAAA+TGG | + | chr1_4:6939474-6939493 | None:intergenic | 20.0% |
| !! | CTAGACAAATTCATATTAAA+AGG | + | chr1_4:6940180-6940199 | None:intergenic | 20.0% |
| !!! | CTTTTAATATGAATTTGTCT+AGG | - | chr1_4:6940178-6940197 | Msa0147080:five_prime_UTR | 20.0% |
| !! | AATATGATTCCATAAAAAAG+TGG | + | chr1_4:6940227-6940246 | None:intergenic | 20.0% |
| !!! | TTTATGGAATCATATTTTGA+TGG | - | chr1_4:6940231-6940250 | Msa0147080:five_prime_UTR | 20.0% |
| !!! | TTATGGAATCATATTTTGAT+GGG | - | chr1_4:6940232-6940251 | Msa0147080:five_prime_UTR | 20.0% |
| ! | GTTATAATTAAGCCGTAATT+TGG | - | chr1_4:6936864-6936883 | Msa0147080:three_prime_UTR | 25.0% |
| ! | TCTAAATGAATAAATCCAGA+AGG | + | chr1_4:6937300-6937319 | None:intergenic | 25.0% |
| ! | TCAATTTCAAATTCTACTTG+TGG | + | chr1_4:6937429-6937448 | None:intergenic | 25.0% |
| !!! | GAAATTGATTTTGACTTGTT+TGG | - | chr1_4:6937441-6937460 | Msa0147080:CDS | 25.0% |
| !!! | CCATATCGATTCAAAAAAAT+TGG | + | chr1_4:6937926-6937945 | None:intergenic | 25.0% |
| !!! | CCAATTTTTTTGAATCGATA+TGG | - | chr1_4:6937923-6937942 | Msa0147080:intron | 25.0% |
| ! | CAACATGGAAAAATAAAAAC+AGG | + | chr1_4:6938284-6938303 | None:intergenic | 25.0% |
| !!! | TTTTTATTTTTCCATGTTGC+AGG | - | chr1_4:6938285-6938304 | Msa0147080:intron | 25.0% |
| ! | AATTCAAATGCAGTTTATCA+TGG | - | chr1_4:6938397-6938416 | Msa0147080:CDS | 25.0% |
| !! | TTGAATTGATTTCTTCTTGA+AGG | - | chr1_4:6938430-6938449 | Msa0147080:CDS | 25.0% |
| !! | TGAATTGATTTCTTCTTGAA+GGG | - | chr1_4:6938431-6938450 | Msa0147080:CDS | 25.0% |
| !!! | TGGCTTTTTTCATATTTTTG+TGG | - | chr1_4:6938478-6938497 | Msa0147080:CDS | 25.0% |
| ! | TTTGCATTTCTTCAATATGA+TGG | - | chr1_4:6938560-6938579 | Msa0147080:CDS | 25.0% |
| ! | TAAAGTTTACCTTTGTGTTA+GGG | - | chr1_4:6938583-6938602 | Msa0147080:CDS | 25.0% |
| ! | AGTTCATTATGATTATGCAT+TGG | - | chr1_4:6938816-6938835 | Msa0147080:intron | 25.0% |
| ! | ACTTTGGATATAAGTACTTA+TGG | - | chr1_4:6938871-6938890 | Msa0147080:CDS | 25.0% |
| ! | ACCTGTTAAATCATTAATCT+AGG | - | chr1_4:6938940-6938959 | Msa0147080:intron | 25.0% |
| ! | CCTGTTAAATCATTAATCTA+GGG | - | chr1_4:6938941-6938960 | Msa0147080:intron | 25.0% |
| ! | TGATTAACGATACAAAAACA+TGG | + | chr1_4:6939156-6939175 | None:intergenic | 25.0% |
| ! | AACAATGAATACTTTCAAGA+TGG | + | chr1_4:6939287-6939306 | None:intergenic | 25.0% |
| !!! | ATCTTGAAAGTATTCATTGT+TGG | - | chr1_4:6939286-6939305 | Msa0147080:intron | 25.0% |
| ! | ATTACATAGCACTGTAATTA+TGG | - | chr1_4:6939394-6939413 | Msa0147080:intron | 25.0% |
| ! | TTGTTAGTTACAAGTTAAGT+AGG | + | chr1_4:6939440-6939459 | None:intergenic | 25.0% |
| ! | ATGATAATTGTTTCAGATGA+AGG | + | chr1_4:6939888-6939907 | None:intergenic | 25.0% |
| ! | AAATGGAAAATCTCTTGTAA+AGG | - | chr1_4:6939980-6939999 | Msa0147080:intron | 25.0% |
| !!! | CATTTTAAAGCGTTATGTAA+CGG | - | chr1_4:6940122-6940141 | Msa0147080:five_prime_UTR | 25.0% |
| !! | TTGTTTTCAGAAACTTTAGT+TGG | - | chr1_4:6940322-6940341 | Msa0147080:five_prime_UTR | 25.0% |
| AATAAATCCAGAAGGAACTA+GGG | + | chr1_4:6937292-6937311 | None:intergenic | 30.0% | |
| TTATTCAGCATAATGCTCAT+CGG | + | chr1_4:6937338-6937357 | None:intergenic | 30.0% | |
| TAGTTTATGATGTAGTCCAT+TGG | - | chr1_4:6937677-6937696 | Msa0147080:intron | 30.0% | |
| ! | TATCTAAAACTTTAGTGAGC+AGG | - | chr1_4:6937712-6937731 | Msa0147080:intron | 30.0% |
| ! | ATCTAAAACTTTAGTGAGCA+GGG | - | chr1_4:6937713-6937732 | Msa0147080:intron | 30.0% |
| ! | ATGGTGATAATGATTAGCAT+TGG | - | chr1_4:6937942-6937961 | Msa0147080:intron | 30.0% |
| ! | TGGTGATAATGATTAGCATT+GGG | - | chr1_4:6937943-6937962 | Msa0147080:intron | 30.0% |
| TGGTTTAATGATTAGCATTG+TGG | - | chr1_4:6938041-6938060 | Msa0147080:intron | 30.0% | |
| ! | TTATTTGTCCTTTGGTGTAA+TGG | - | chr1_4:6938083-6938102 | Msa0147080:intron | 30.0% |
| AGTAGTTGAAAAGAATAAGC+CGG | - | chr1_4:6938151-6938170 | Msa0147080:intron | 30.0% | |
| ! | AAATTGAACAGCTTCGATTT+TGG | - | chr1_4:6938174-6938193 | Msa0147080:intron | 30.0% |
| ACAATATTGCATACCAATAC+TGG | + | chr1_4:6938202-6938221 | None:intergenic | 30.0% | |
| ! | TTGGAGATACTTTTGTATCA+TGG | - | chr1_4:6938342-6938361 | Msa0147080:intron | 30.0% |
| ACTTAGCTTCACAATACATT+GGG | + | chr1_4:6938458-6938477 | None:intergenic | 30.0% | |
| AACTTAGCTTCACAATACAT+TGG | + | chr1_4:6938459-6938478 | None:intergenic | 30.0% | |
| AATGTATTGTGAAGCTAAGT+TGG | - | chr1_4:6938458-6938477 | Msa0147080:CDS | 30.0% | |
| GTAAAGTTTACCTTTGTGTT+AGG | - | chr1_4:6938582-6938601 | Msa0147080:CDS | 30.0% | |
| TGCAACATATGGTTTAAAGA+AGG | + | chr1_4:6938629-6938648 | None:intergenic | 30.0% | |
| ! | ATTTGAGTTTGACTTCACTT+TGG | - | chr1_4:6938855-6938874 | Msa0147080:CDS | 30.0% |
| ! | GGTATGTATTAAGTTGTATG+TGG | + | chr1_4:6938923-6938942 | None:intergenic | 30.0% |
| CCCTAGATTAATGATTTAAC+AGG | + | chr1_4:6938944-6938963 | None:intergenic | 30.0% | |
| CTAGGAAACTAACTAATAAC+TGG | - | chr1_4:6938973-6938992 | Msa0147080:intron | 30.0% | |
| !! | GTCATTTTGCTTATCAGAAA+AGG | + | chr1_4:6939019-6939038 | None:intergenic | 30.0% |
| TGTCTAACAATACAAACACA+TGG | + | chr1_4:6939088-6939107 | None:intergenic | 30.0% | |
| ACTTTCAAGATGGAAAAGAA+AGG | + | chr1_4:6939277-6939296 | None:intergenic | 30.0% | |
| !! | TTGAAAGTATTCATTGTTGG+AGG | - | chr1_4:6939289-6939308 | Msa0147080:intron | 30.0% |
| TATTCATTGTTGGAGGAAAA+TGG | - | chr1_4:6939296-6939315 | Msa0147080:intron | 30.0% | |
| ATTCATTGTTGGAGGAAAAT+GGG | - | chr1_4:6939297-6939316 | Msa0147080:intron | 30.0% | |
| ! | TTATTTAAAGCAGCTAAAGG+AGG | + | chr1_4:6939792-6939811 | None:intergenic | 30.0% |
| ! | TGGTTATTTAAAGCAGCTAA+AGG | + | chr1_4:6939795-6939814 | None:intergenic | 30.0% |
| !! | GCTGTTGATTCAATATTCTT+AGG | + | chr1_4:6939936-6939955 | None:intergenic | 30.0% |
| !! | CGTTACATAACGCTTTAAAA+TGG | + | chr1_4:6940124-6940143 | None:intergenic | 30.0% |
| AATATGAATTTGTCTAGGCA+CGG | - | chr1_4:6940183-6940202 | Msa0147080:five_prime_UTR | 30.0% | |
| AGAGGAAAAGTAACAGAAGA+AGG | + | chr1_4:6937004-6937023 | None:intergenic | 35.0% | |
| GAATAAATCCAGAAGGAACT+AGG | + | chr1_4:6937293-6937312 | None:intergenic | 35.0% | |
| ! | GTTCTTTAGTTTCAGTTGCT+TGG | - | chr1_4:6937776-6937795 | Msa0147080:intron | 35.0% |
| TTAGTTTCAGTTGCTTGGAT+TGG | - | chr1_4:6937781-6937800 | Msa0147080:intron | 35.0% | |
| TGTTAATCCAAAGTCCAAAC+AGG | + | chr1_4:6937821-6937840 | None:intergenic | 35.0% | |
| TGTTTGGACTTTGGATTAAC+AGG | - | chr1_4:6937820-6937839 | Msa0147080:intron | 35.0% | |
| TTTCAGGGATACAGAATGAT+AGG | - | chr1_4:6937860-6937879 | Msa0147080:intron | 35.0% | |
| ! | GATAATGATTAGCATTGGGA+TGG | - | chr1_4:6937947-6937966 | Msa0147080:intron | 35.0% |
| ! | AAGTCTTATCCCACTAAGTA+GGG | + | chr1_4:6938006-6938025 | None:intergenic | 35.0% |
| ACTTTATAGCATTCATACGC+TGG | + | chr1_4:6938134-6938153 | None:intergenic | 35.0% | |
| AATCGAAGCTGTTCAATTTC+CGG | + | chr1_4:6938173-6938192 | None:intergenic | 35.0% | |
| ATACTACACGTTTAGCATCA+AGG | + | chr1_4:6938230-6938249 | None:intergenic | 35.0% | |
| ! | TTTTCCATGTTGCAGGATTT+TGG | - | chr1_4:6938292-6938311 | Msa0147080:intron | 35.0% |
| TATGTTGTTCCCTAACACAA+AGG | + | chr1_4:6938595-6938614 | None:intergenic | 35.0% | |
| AACATGAGCCAGAAATTGAT+CGG | - | chr1_4:6938650-6938669 | Msa0147080:intron | 35.0% | |
| TCTCAAAGAGCTGTTAGTTA+CGG | - | chr1_4:6938721-6938740 | Msa0147080:CDS | 35.0% | |
| ATCATAATGAACTACCTGAG+CGG | + | chr1_4:6938809-6938828 | None:intergenic | 35.0% | |
| CATATTGTAGTGTTCTTTGC+TGG | - | chr1_4:6939236-6939255 | Msa0147080:intron | 35.0% | |
| CAAGATGGAAAAGAAAGGAA+AGG | + | chr1_4:6939272-6939291 | None:intergenic | 35.0% | |
| AACTTCAAGTCAGTTCCAAA+AGG | - | chr1_4:6939659-6939678 | Msa0147080:intron | 35.0% | |
| GTTCCAAAAGGAAGTAAAAG+AGG | - | chr1_4:6939671-6939690 | Msa0147080:intron | 35.0% | |
| ! | ACTCCTCTTTTACTTCCTTT+TGG | + | chr1_4:6939677-6939696 | None:intergenic | 35.0% |
| GGAAGTAAAAGAGGAGTTAT+TGG | - | chr1_4:6939680-6939699 | Msa0147080:intron | 35.0% | |
| TGTTTGTTTAAACCTGCAAC+AGG | + | chr1_4:6939735-6939754 | None:intergenic | 35.0% | |
| ! | GTTATTTAAAGCAGCTACAG+AGG | + | chr1_4:6939763-6939782 | None:intergenic | 35.0% |
| TGAGTAGTTAAACCAGCTAT+AGG | + | chr1_4:6939825-6939844 | None:intergenic | 35.0% | |
| AGATGAAGGATTAGACTTCT+GGG | + | chr1_4:6939874-6939893 | None:intergenic | 35.0% | |
| TGGAAAATCTCTTGTAAAGG+AGG | - | chr1_4:6939983-6940002 | Msa0147080:intron | 35.0% | |
| !! | CCAGAATGGAAGAAAGTATT+CGG | - | chr1_4:6940009-6940028 | Msa0147080:intron | 35.0% |
| !! | CAGAATGGAAGAAAGTATTC+GGG | - | chr1_4:6940010-6940029 | Msa0147080:intron | 35.0% |
| !! | AAGAAAGTATTCGGGTTACA+CGG | - | chr1_4:6940018-6940037 | Msa0147080:intron | 35.0% |
| CTAAGAAAAACCAGATCAGT+AGG | - | chr1_4:6940047-6940066 | Msa0147080:intron | 35.0% | |
| !! | ATCGACAATTTTGTGCTACT+GGG | + | chr1_4:6940075-6940094 | None:intergenic | 35.0% |
| CAAAATTGTCGATGTTTAGC+CGG | - | chr1_4:6940082-6940101 | Msa0147080:five_prime_UTR | 35.0% | |
| ! | AAAGCGTTATGTAACGGTTT+CGG | - | chr1_4:6940128-6940147 | Msa0147080:five_prime_UTR | 35.0% |
| !!! | AGCTTGATGCCACTTTTTTA+TGG | - | chr1_4:6940215-6940234 | Msa0147080:five_prime_UTR | 35.0% |
| !!! | GGAATCATATTTTGATGGGA+TGG | - | chr1_4:6940236-6940255 | Msa0147080:five_prime_UTR | 35.0% |
| CGATTAGGGTGACCAAATTA+CGG | + | chr1_4:6936879-6936898 | None:intergenic | 40.0% | |
| TTTACGAGATGAGGTGAATC+TGG | + | chr1_4:6937122-6937141 | None:intergenic | 40.0% | |
| ! | GAGAAGAGTTTTACGAGATG+AGG | + | chr1_4:6937131-6937150 | None:intergenic | 40.0% |
| !! | GTAGCTTTTGAGTCTAAACG+TGG | - | chr1_4:6937506-6937525 | Msa0147080:CDS | 40.0% |
| ATGCTGTGGTATATCCTGTT+TGG | - | chr1_4:6937804-6937823 | Msa0147080:intron | 40.0% | |
| GGTATATCCTGTTTGGACTT+TGG | - | chr1_4:6937811-6937830 | Msa0147080:intron | 40.0% | |
| TGATAGGATCCTTTCTTACC+TGG | - | chr1_4:6937876-6937895 | Msa0147080:intron | 40.0% | |
| GATAGGATCCTTTCTTACCT+GGG | - | chr1_4:6937877-6937896 | Msa0147080:intron | 40.0% | |
| ACTAAGTAGGGTCAGCTAAA+TGG | + | chr1_4:6937994-6938013 | None:intergenic | 40.0% | |
| ATTTAGCTGACCCTACTTAG+TGG | - | chr1_4:6937993-6938012 | Msa0147080:intron | 40.0% | |
| TTTAGCTGACCCTACTTAGT+GGG | - | chr1_4:6937994-6938013 | Msa0147080:intron | 40.0% | |
| ! | CAAGTCTTATCCCACTAAGT+AGG | + | chr1_4:6938007-6938026 | None:intergenic | 40.0% |
| CTACTTAGTGGGATAAGACT+TGG | - | chr1_4:6938005-6938024 | Msa0147080:intron | 40.0% | |
| !!! | TGTAATGGCAGGAGTGTTTT+TGG | - | chr1_4:6938098-6938117 | Msa0147080:intron | 40.0% |
| ATAGCATTCATACGCTGGAT+AGG | + | chr1_4:6938129-6938148 | None:intergenic | 40.0% | |
| !!! | TTCGATTTTGGTGCCAGTAT+TGG | - | chr1_4:6938186-6938205 | Msa0147080:intron | 40.0% |
| ATGACAGTGTGTGAGAGATT+TGG | - | chr1_4:6938323-6938342 | Msa0147080:intron | 40.0% | |
| TTTGTGGTACCCCAAAACAA+AGG | - | chr1_4:6938494-6938513 | Msa0147080:CDS | 40.0% | |
| ! | GGCTCATGTTTTGCAACATA+TGG | + | chr1_4:6938640-6938659 | None:intergenic | 40.0% |
| AGAAATTGATCGGAGCTTGT+CGG | - | chr1_4:6938660-6938679 | Msa0147080:intron | 40.0% | |
| ! | AATCTAGGGCGATTTGAACT+AGG | - | chr1_4:6938955-6938974 | Msa0147080:intron | 40.0% |
| TTGGAGGAAAATGGGAGAAA+GGG | - | chr1_4:6939305-6939324 | Msa0147080:CDS | 40.0% | |
| TTATGGCAACAACAACAACC+TGG | - | chr1_4:6939411-6939430 | Msa0147080:intron | 40.0% | |
| TACAAGTTAAGTAGGTTGCC+AGG | + | chr1_4:6939432-6939451 | None:intergenic | 40.0% | |
| TGTTTAAACCTGCAACAGGA+GGG | + | chr1_4:6939731-6939750 | None:intergenic | 40.0% | |
| TTGTTTAAACCTGCAACAGG+AGG | + | chr1_4:6939732-6939751 | None:intergenic | 40.0% | |
| GTAGTTAAACCAGCTATAGG+AGG | + | chr1_4:6939822-6939841 | None:intergenic | 40.0% | |
| CAGATGAAGGATTAGACTTC+TGG | + | chr1_4:6939875-6939894 | None:intergenic | 40.0% | |
| ! | ATTTTCAGTTGCTGAAGAGG+AGG | + | chr1_4:6939964-6939983 | None:intergenic | 40.0% |
| TCCTCTTCAGCAACTGAAAA+TGG | - | chr1_4:6939963-6939982 | Msa0147080:intron | 40.0% | |
| ! | TCCATTTTCAGTTGCTGAAG+AGG | + | chr1_4:6939967-6939986 | None:intergenic | 40.0% |
| CCGAATACTTTCTTCCATTC+TGG | + | chr1_4:6940012-6940031 | None:intergenic | 40.0% | |
| !! | AGAAAGTATTCGGGTTACAC+GGG | - | chr1_4:6940019-6940038 | Msa0147080:intron | 40.0% |
| ! | CATCGACAATTTTGTGCTAC+TGG | + | chr1_4:6940076-6940095 | None:intergenic | 40.0% |
| TCGATGTTTAGCCGGAAATA+GGG | - | chr1_4:6940090-6940109 | Msa0147080:five_prime_UTR | 40.0% | |
| GATGGGATGGATATTTGCAT+CGG | - | chr1_4:6940249-6940268 | Msa0147080:five_prime_UTR | 40.0% | |
| ATTTGGTCACCCTAATCGCT+CGG | - | chr1_4:6936881-6936900 | Msa0147080:three_prime_UTR | 45.0% | |
| TACTAGTGACCGAGCGATTA+GGG | + | chr1_4:6936893-6936912 | None:intergenic | 45.0% | |
| TTGTCGGTGAGAGATGAAAG+AGG | + | chr1_4:6937022-6937041 | None:intergenic | 45.0% | |
| GTGAAGGATTGCGTTGTTGT+CGG | + | chr1_4:6937038-6937057 | None:intergenic | 45.0% | |
| ! | TTTTTCGCCCTAGTTCCTTC+TGG | - | chr1_4:6937282-6937301 | Msa0147080:CDS | 45.0% |
| ! | GACTTGGTTGTTGTTGTGTC+TGG | - | chr1_4:6938021-6938040 | Msa0147080:intron | 45.0% |
| ! | TTGTCCTTTGGTGTAATGGC+AGG | - | chr1_4:6938087-6938106 | Msa0147080:intron | 45.0% |
| GCAACCAAAATCCTGCAACA+TGG | + | chr1_4:6938299-6938318 | None:intergenic | 45.0% | |
| GACAAGCTCCGATCAATTTC+TGG | + | chr1_4:6938661-6938680 | None:intergenic | 45.0% | |
| CTTGTCGGAACTAAGGACAA+GGG | - | chr1_4:6938675-6938694 | Msa0147080:intron | 45.0% | |
| GTTGGAGGAAAATGGGAGAA+AGG | - | chr1_4:6939304-6939323 | Msa0147080:CDS | 45.0% | |
| CTTGAAATTGCAGCAACGAC+CGG | - | chr1_4:6939536-6939555 | Msa0147080:intron | 45.0% | |
| TTGAAATTGCAGCAACGACC+GGG | - | chr1_4:6939537-6939556 | Msa0147080:intron | 45.0% | |
| ! | AACTTGTGGTTCTGTAGCAG+CGG | + | chr1_4:6939610-6939629 | None:intergenic | 45.0% |
| ! | CTGACTTGAAGTTGTGCTAG+AGG | + | chr1_4:6939652-6939671 | None:intergenic | 45.0% |
| GTTTAAACCTGCAACAGGAG+GGG | + | chr1_4:6939730-6939749 | None:intergenic | 45.0% | |
| TGTAAAGGAGGAGACCAGAA+TGG | - | chr1_4:6939995-6940014 | Msa0147080:intron | 45.0% | |
| !! | GAAAGTATTCGGGTTACACG+GGG | - | chr1_4:6940020-6940039 | Msa0147080:intron | 45.0% |
| GTCGATGTTTAGCCGGAAAT+AGG | - | chr1_4:6940089-6940108 | Msa0147080:five_prime_UTR | 45.0% | |
| TTAGCCGGAAATAGGGTAGT+TGG | - | chr1_4:6940097-6940116 | Msa0147080:five_prime_UTR | 45.0% | |
| TGGTCCAACTACCCTATTTC+CGG | + | chr1_4:6940104-6940123 | None:intergenic | 45.0% | |
| CTACTAGTGACCGAGCGATT+AGG | + | chr1_4:6936894-6936913 | None:intergenic | 50.0% | |
| CGGTCACTAGTAGAGTTGCT+TGG | - | chr1_4:6936901-6936920 | Msa0147080:three_prime_UTR | 50.0% | |
| GAAGGAAAATGCGACGGTGA+AGG | + | chr1_4:6937054-6937073 | None:intergenic | 50.0% | |
| ACGAGATGAGGTGAATCTGG+CGG | + | chr1_4:6937119-6937138 | None:intergenic | 50.0% | |
| ! | GTTGCTTGGATTGGATGCTG+TGG | - | chr1_4:6937790-6937809 | Msa0147080:intron | 50.0% |
| TGAAACTTACACAAGCGCCC+AGG | + | chr1_4:6937897-6937916 | None:intergenic | 50.0% | |
| CACTCCTGCCATTACACCAA+AGG | + | chr1_4:6938094-6938113 | None:intergenic | 50.0% | |
| ATCGGAGCTTGTCGGAACTA+AGG | - | chr1_4:6938668-6938687 | Msa0147080:intron | 50.0% | |
| GCTTGTCGGAACTAAGGACA+AGG | - | chr1_4:6938674-6938693 | Msa0147080:intron | 50.0% | |
| GGTTTACGAACTCTCACACC+CGG | + | chr1_4:6939564-6939583 | None:intergenic | 50.0% | |
| GATGGGGGTTCTTCAACTTG+TGG | + | chr1_4:6939624-6939643 | None:intergenic | 50.0% | |
| TTGTGCTAGAGGCAGGAGAT+GGG | + | chr1_4:6939641-6939660 | None:intergenic | 50.0% | |
| CTTGAAGTTGTGCTAGAGGC+AGG | + | chr1_4:6939648-6939667 | None:intergenic | 50.0% | |
| AAGCAGCTAAAGGAGGCTTC+TGG | + | chr1_4:6939785-6939804 | None:intergenic | 50.0% | |
| AACCAGAAGCCTCCTATAGC+TGG | - | chr1_4:6939810-6939829 | Msa0147080:intron | 50.0% | |
| AACCAGCTATAGGAGGCTTC+TGG | + | chr1_4:6939815-6939834 | None:intergenic | 50.0% | |
| CTACTGGGTTCCTACTGATC+TGG | + | chr1_4:6940060-6940079 | None:intergenic | 50.0% | |
| !! | CATCGGCTCTTCTGTATAGC+AGG | - | chr1_4:6940266-6940285 | Msa0147080:five_prime_UTR | 50.0% |
| GACGGCGAAGGAAAATGCGA+CGG | + | chr1_4:6937060-6937079 | None:intergenic | 55.0% | |
| TGGTTGAGGAAGATCGGCGA+CGG | + | chr1_4:6937078-6937097 | None:intergenic | 55.0% | |
| TGGCGGTGGTTGAGGAAGAT+CGG | + | chr1_4:6937084-6937103 | None:intergenic | 55.0% | |
| AGATGAGGTGAATCTGGCGG+TGG | + | chr1_4:6937116-6937135 | None:intergenic | 55.0% | |
| CACAAGCGCCCAGGTAAGAA+AGG | + | chr1_4:6937888-6937907 | None:intergenic | 55.0% | |
| GTCGGAACTAAGGACAAGGG+CGG | - | chr1_4:6938678-6938697 | Msa0147080:intron | 55.0% | |
| TCGGAACTAAGGACAAGGGC+GGG | - | chr1_4:6938679-6938698 | Msa0147080:intron | 55.0% | |
| !! | TGAACTACCTGAGCGGACTG+AGG | + | chr1_4:6938802-6938821 | None:intergenic | 55.0% |
| TCGTAAACCTGCACCTGCCA+AGG | - | chr1_4:6939575-6939594 | Msa0147080:intron | 55.0% | |
| CGTAAACCTGCACCTGCCAA+GGG | - | chr1_4:6939576-6939595 | Msa0147080:intron | 55.0% | |
| TGTGCTAGAGGCAGGAGATG+GGG | + | chr1_4:6939640-6939659 | None:intergenic | 55.0% | |
| GTTGTGCTAGAGGCAGGAGA+TGG | + | chr1_4:6939642-6939661 | None:intergenic | 55.0% | |
| ! | GGGGCTACTTTAGGAGCTTG+TGG | + | chr1_4:6939711-6939730 | None:intergenic | 55.0% |
| ! | GCAACAGGAGGGGCTACTTT+AGG | + | chr1_4:6939720-6939739 | None:intergenic | 55.0% |
| AAAGTAGCCCCTCCTGTTGC+AGG | - | chr1_4:6939720-6939739 | Msa0147080:intron | 55.0% | |
| TGAGGTGAATCTGGCGGTGG+CGG | + | chr1_4:6937113-6937132 | None:intergenic | 60.0% | |
| ATTGCAGCAACGACCGGGAC+CGG | - | chr1_4:6939542-6939561 | Msa0147080:intron | 60.0% | |
| GTTCTGTAGCAGCGGCTGGT+TGG | + | chr1_4:6939602-6939621 | None:intergenic | 60.0% | |
| ! | TGTGGTTCTGTAGCAGCGGC+TGG | + | chr1_4:6939606-6939625 | None:intergenic | 60.0% |
| GTGCTAGAGGCAGGAGATGG+GGG | + | chr1_4:6939639-6939658 | None:intergenic | 60.0% | |
| AGGAAGATCGGCGACGGCGA+AGG | + | chr1_4:6937072-6937091 | None:intergenic | 65.0% | |
| ACCAGCACCTCAGTCCGCTC+AGG | - | chr1_4:6938792-6938811 | Msa0147080:intron | 65.0% | |
| !! | ACCTGAGCGGACTGAGGTGC+TGG | + | chr1_4:6938796-6938815 | None:intergenic | 65.0% |
| TTGCAGCAACGACCGGGACC+GGG | - | chr1_4:6939543-6939562 | Msa0147080:intron | 65.0% | |
| CGAACTCTCACACCCGGTCC+CGG | + | chr1_4:6939558-6939577 | None:intergenic | 65.0% | |
| ! | GAATCTGGCGGTGGCGGTGG+CGG | + | chr1_4:6937107-6937126 | None:intergenic | 70.0% |
| ! | GGTGAATCTGGCGGTGGCGG+TGG | + | chr1_4:6937110-6937129 | None:intergenic | 70.0% |
| ! | GGTTGGCCCTTGGCAGGTGC+AGG | + | chr1_4:6939585-6939604 | None:intergenic | 70.0% |
| ! | AGCAGCGGCTGGTTGGCCCT+TGG | + | chr1_4:6939595-6939614 | None:intergenic | 70.0% |
| ! | GGTGGCGGTGGCGGTGGTTG+AGG | + | chr1_4:6937092-6937111 | None:intergenic | 75.0% |
| ! | GCGGCTGGTTGGCCCTTGGC+AGG | + | chr1_4:6939591-6939610 | None:intergenic | 75.0% |
| !! | TCTGGCGGTGGCGGTGGCGG+TGG | + | chr1_4:6937104-6937123 | None:intergenic | 80.0% |
| !! | GGTGGCGGTGGCGGTGGCGG+TGG | + | chr1_4:6937098-6937117 | None:intergenic | 85.0% |
| !! | GGCGGTGGCGGTGGCGGTGG+CGG | + | chr1_4:6937095-6937114 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 6936824 | 6940382 | 6936824 | ID=Msa0147080;Name=Msa0147080 |
| chr1_4 | mRNA | 6936824 | 6940382 | 6936824 | ID=Msa0147080-mRNA-1;Parent=Msa0147080;Name=Msa0147080-mRNA-1;_AED=0.04;_eAED=0.04;_QI=322|1|1|1|1|1|7|303|330 |
| chr1_4 | exon | 6936824 | 6937657 | 6936824 | ID=Msa0147080-mRNA-1:exon:3031;Parent=Msa0147080-mRNA-1 |
| chr1_4 | exon | 6938393 | 6938602 | 6938393 | ID=Msa0147080-mRNA-1:exon:3030;Parent=Msa0147080-mRNA-1 |
| chr1_4 | exon | 6938691 | 6938754 | 6938691 | ID=Msa0147080-mRNA-1:exon:3029;Parent=Msa0147080-mRNA-1 |
| chr1_4 | exon | 6938843 | 6938899 | 6938843 | ID=Msa0147080-mRNA-1:exon:3028;Parent=Msa0147080-mRNA-1 |
| chr1_4 | exon | 6938999 | 6939097 | 6938999 | ID=Msa0147080-mRNA-1:exon:3027;Parent=Msa0147080-mRNA-1 |
| chr1_4 | exon | 6939300 | 6939340 | 6939300 | ID=Msa0147080-mRNA-1:exon:3026;Parent=Msa0147080-mRNA-1 |
| chr1_4 | exon | 6940070 | 6940382 | 6940070 | ID=Msa0147080-mRNA-1:exon:3025;Parent=Msa0147080-mRNA-1 |
| chr1_4 | five_prime_UTR | 6940070 | 6940382 | 6940070 | ID=Msa0147080-mRNA-1:five_prime_utr;Parent=Msa0147080-mRNA-1 |
| chr1_4 | five_prime_UTR | 6939332 | 6939340 | 6939332 | ID=Msa0147080-mRNA-1:five_prime_utr;Parent=Msa0147080-mRNA-1 |
| chr1_4 | CDS | 6939300 | 6939331 | 6939300 | ID=Msa0147080-mRNA-1:cds;Parent=Msa0147080-mRNA-1 |
| chr1_4 | CDS | 6938999 | 6939097 | 6938999 | ID=Msa0147080-mRNA-1:cds;Parent=Msa0147080-mRNA-1 |
| chr1_4 | CDS | 6938843 | 6938899 | 6938843 | ID=Msa0147080-mRNA-1:cds;Parent=Msa0147080-mRNA-1 |
| chr1_4 | CDS | 6938691 | 6938754 | 6938691 | ID=Msa0147080-mRNA-1:cds;Parent=Msa0147080-mRNA-1 |
| chr1_4 | CDS | 6938393 | 6938602 | 6938393 | ID=Msa0147080-mRNA-1:cds;Parent=Msa0147080-mRNA-1 |
| chr1_4 | CDS | 6937127 | 6937657 | 6937127 | ID=Msa0147080-mRNA-1:cds;Parent=Msa0147080-mRNA-1 |
| chr1_4 | three_prime_UTR | 6936824 | 6937126 | 6936824 | ID=Msa0147080-mRNA-1:three_prime_utr;Parent=Msa0147080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
