AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0576330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576330 MtrunA17_Chr8g0391391 98.583 494 7 0 21 514 1 494 0.0 1009
Msa0576330 MtrunA17_Chr3g0145261 61.814 474 174 5 43 513 18 487 0.0 600
Msa0576330 MtrunA17_Chr1g0195271 62.581 465 171 2 47 511 36 497 0.0 588
Msa0576330 MtrunA17_Chr4g0018301 59.052 464 182 4 50 513 45 500 0.0 565
Msa0576330 MtrunA17_Chr3g0119821 58.065 465 193 2 49 513 34 496 0.0 551
Msa0576330 MtrunA17_Chr4g0018361 58.130 492 187 8 34 514 10 493 0.0 546
Msa0576330 MtrunA17_Chr3g0080171 55.484 465 200 4 50 513 25 483 3.68e-179 512
Msa0576330 MtrunA17_Chr8g0388051 49.895 475 225 8 46 512 24 493 4.30e-159 466
Msa0576330 MtrunA17_Chr5g0397201 50.000 468 216 9 46 508 36 490 4.89e-157 456
Msa0576330 MtrunA17_Chr3g0119371 47.047 508 252 9 16 510 2 505 2.66e-155 453
Msa0576330 MtrunA17_Chr5g0439311 45.679 486 251 8 34 510 15 496 3.64e-150 439
Msa0576330 MtrunA17_Chr4g0038131 49.574 470 223 9 48 508 26 490 1.71e-145 432
Msa0576330 MtrunA17_Chr1g0164201 47.984 496 234 10 25 511 2 482 8.85e-142 417
Msa0576330 MtrunA17_Chr3g0086311 44.398 482 247 10 34 508 10 477 7.08e-136 402
Msa0576330 MtrunA17_Chr5g0397181 45.409 403 202 9 111 508 1 390 5.02e-121 361
Msa0576330 MtrunA17_Chr3g0142501 41.336 479 250 10 46 508 53 516 7.72e-112 342
Msa0576330 MtrunA17_Chr4g0018341 56.690 284 117 3 230 513 2 279 1.05e-110 330
Msa0576330 MtrunA17_Chr3g0136381 44.321 361 187 5 50 408 30 378 1.86e-108 330
Msa0576330 MtrunA17_Chr8g0372031 41.365 469 254 10 51 508 64 522 1.02e-107 331
Msa0576330 MtrunA17_Chr5g0444721 44.789 355 184 7 163 508 211 562 3.74e-91 289
Msa0576330 MtrunA17_Chr5g0444721 42.953 149 80 3 17 163 2 147 1.43e-34 137
Msa0576330 MtrunA17_Chr2g0291461 39.306 519 260 18 34 512 88 591 5.69e-89 285
Msa0576330 MtrunA17_Chr3g0120661 36.719 512 274 18 32 507 91 588 1.95e-83 271
Msa0576330 MtrunA17_Chr3g0126111 33.588 524 281 19 29 507 79 580 1.26e-80 263
Msa0576330 MtrunA17_Chr4g0018351 64.286 182 63 1 50 231 30 209 3.59e-75 236
Msa0576330 MtrunA17_Chr7g0269571 58.580 169 58 2 354 511 43 210 1.11e-60 199
Msa0576330 MtrunA17_Chr4g0022271 54.610 141 57 3 354 493 20 154 3.06e-41 145
Msa0576330 MtrunA17_Chr1g0164181 47.531 162 82 2 348 508 170 329 1.51e-40 149
Msa0576330 MtrunA17_Chr1g0164181 42.791 215 107 5 92 294 3 213 2.23e-40 148
Msa0576330 MtrunA17_Chr4g0072811 39.130 161 87 5 352 507 8 162 1.60e-24 100
Msa0576330 MtrunA17_Chr3g0136371 46.316 95 48 3 407 500 1 93 2.97e-20 85.9
Msa0576330 MtrunA17_Chr7g0269561 47.619 84 30 1 260 343 25 94 1.39e-17 79.0
Msa0576330 MtrunA17_Chr5g0397171 55.172 58 24 1 34 89 23 80 2.57e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576330 AT1G70710.1 79.108 493 98 3 21 513 1 488 0.0 810
Msa0576330 AT1G23210.1 75.975 487 114 2 27 513 5 488 0.0 781
Msa0576330 AT4G02290.1 62.151 465 173 2 47 511 49 510 0.0 587
Msa0576330 AT4G39010.1 59.488 469 185 4 49 514 28 494 0.0 584
Msa0576330 AT1G02800.1 61.771 463 172 3 49 511 42 499 0.0 566
Msa0576330 AT4G39000.1 54.237 472 211 4 46 514 21 490 0.0 523
Msa0576330 AT4G38990.2 54.601 489 209 8 35 514 9 493 1.35e-179 514
Msa0576330 AT1G22880.1 53.638 481 217 3 32 512 6 480 6.25e-179 512
Msa0576330 AT1G71380.1 52.807 481 221 3 32 512 6 480 3.13e-177 508
Msa0576330 AT4G02290.2 59.601 401 159 2 111 511 1 398 4.93e-168 481
Msa0576330 AT1G64390.1 51.477 474 217 8 47 512 22 490 5.76e-161 471
Msa0576330 AT4G11050.2 50.638 470 219 8 47 508 23 487 1.43e-158 462
Msa0576330 AT4G11050.3 50.638 470 219 8 47 508 23 487 3.33e-158 464
Msa0576330 AT4G11050.1 50.638 470 219 8 47 508 23 487 3.96e-158 464
Msa0576330 AT4G09740.1 50.209 478 223 7 34 508 7 472 4.10e-157 456
Msa0576330 AT4G23560.1 50.000 478 223 8 34 508 8 472 5.56e-157 456
Msa0576330 AT4G39010.2 57.851 363 149 3 49 408 28 389 9.99e-154 444
Msa0576330 AT2G32990.1 46.774 496 234 10 37 508 13 502 1.17e-147 434
Msa0576330 AT1G22880.2 52.239 402 186 3 111 512 1 396 1.21e-145 424
Msa0576330 AT2G44550.1 47.325 486 239 10 30 509 14 488 2.74e-138 408
Msa0576330 AT2G44540.1 46.985 481 240 9 34 508 17 488 1.59e-135 401
Msa0576330 AT3G43860.2 46.137 466 234 8 50 512 34 485 4.91e-135 400
Msa0576330 AT3G43860.1 46.137 466 234 8 50 512 34 485 4.91e-135 400
Msa0576330 AT2G44570.1 47.755 490 233 13 31 508 11 489 3.28e-133 395
Msa0576330 AT1G48930.1 48.077 468 230 8 49 508 29 491 6.25e-133 399
Msa0576330 AT2G44560.1 47.143 490 242 10 27 508 8 488 4.32e-130 387
Msa0576330 AT1G19940.2 42.117 463 251 8 50 505 48 500 7.13e-117 354
Msa0576330 AT1G19940.1 42.117 463 251 8 50 505 48 500 7.13e-117 354
Msa0576330 AT1G22880.3 54.799 323 141 2 32 354 6 323 1.64e-113 339
Msa0576330 AT1G75680.1 43.319 464 244 10 46 501 53 505 1.39e-112 343
Msa0576330 AT4G38990.1 50.689 363 152 5 35 396 9 345 2.75e-111 334
Msa0576330 AT2G44570.2 45.409 403 199 11 31 422 11 403 3.99e-94 292
Msa0576330 AT1G19940.3 39.891 366 208 6 50 408 48 408 1.63e-81 260
Msa0576330 AT5G49720.1 36.754 536 285 18 18 513 68 589 5.00e-81 265
Msa0576330 AT4G24260.1 36.872 537 283 20 18 513 68 589 1.19e-78 258
Msa0576330 AT1G65610.1 34.477 554 301 20 6 512 54 592 3.03e-78 257
Msa0576330 AT4G24260.3 35.035 431 229 18 18 407 68 488 4.80e-49 176
Msa0576330 AT4G24260.2 36.490 359 186 14 18 340 68 420 9.50e-46 166
Msa0576330 AT3G42153.1 41.667 96 48 3 261 352 16 107 1.72e-13 67.4

Find 176 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGCATGGCTTAGGTAAT+TGG 0.218254 4_1:-80395786 None:intergenic
CCGTTTACATCACAGTAAAA+TGG 0.226605 4_1:-80392983 None:intergenic
CTTGAAAAGGGAAAAGAAAA+TGG 0.226760 4_1:+80396491 Msa0576330:three_prime_UTR
GCTTGGAGTGTGATTGATTT+TGG 0.252189 4_1:+80392185 Msa0576330:CDS
TCTTGTGCAGGAGGTGTTAA+TGG 0.257604 4_1:+80395256 Msa0576330:intron
ACCACATGGCACAACCTTAT+TGG 0.262580 4_1:-80395804 None:intergenic
AGACATTTGGGTTAGGGTTT+GGG 0.278356 4_1:-80396258 None:intergenic
GATTAATGTCCTCATTTCTA+AGG 0.284719 4_1:+80393544 Msa0576330:CDS
TACTAGGTTAACTACATTCT+TGG 0.292991 4_1:+80396091 Msa0576330:intron
CTGTGATGTAAACGGTTATC+AGG 0.307699 4_1:+80392991 Msa0576330:CDS
GTCCCAACCAAACTCATTAA+TGG 0.312220 4_1:-80393507 None:intergenic
ACTAGGTTAACTACATTCTT+GGG 0.314393 4_1:+80396092 Msa0576330:intron
AAGACATTTGGGTTAGGGTT+TGG 0.317944 4_1:-80396259 None:intergenic
TGATAGAAAGGCCTGGAATC+AGG 0.354115 4_1:-80396328 None:intergenic
CAACAGTTGTGGTCCGATAA+AGG 0.356045 4_1:-80392326 None:intergenic
CCAACCAAGACATTTGGGTT+AGG 0.358950 4_1:-80396265 None:intergenic
ACAGCTCCAACCAAGACATT+TGG 0.360590 4_1:-80396271 None:intergenic
CTCCACTGGCGCCGTGACTC+TGG 0.364161 4_1:+80391982 Msa0576330:CDS
TTGAAAAGGGAAAAGAAAAT+GGG 0.369567 4_1:+80396492 Msa0576330:three_prime_UTR
CAGATTCGTTCCCTGATTCC+AGG 0.376102 4_1:+80396317 Msa0576330:CDS
TTAAAGGCGACGTCAAATAT+AGG 0.380427 4_1:+80392272 Msa0576330:CDS
CCCTCTATTGTTCTTGAAAA+GGG 0.385782 4_1:+80396479 Msa0576330:three_prime_UTR
TCAAGTCGGTGATCCTTTAT+CGG 0.388734 4_1:+80392313 Msa0576330:CDS
TATCTATGTGGTGGGCAAAA+TGG 0.395332 4_1:+80396453 Msa0576330:three_prime_UTR
TTACCTAAGCCATGCCAATA+AGG 0.396072 4_1:+80395790 Msa0576330:CDS
AATTGGAATAAGCTAGTAAC+AGG 0.398288 4_1:-80395769 None:intergenic
ACCCTCTATTGTTCTTGAAA+AGG 0.403689 4_1:+80396478 Msa0576330:three_prime_UTR
TGCATCCAATGTGGGCTGGA+TGG 0.405346 4_1:-80396210 None:intergenic
TTTATTTGTTCAACATTGCC+TGG 0.407844 4_1:+80395323 Msa0576330:CDS
TTGGGAGAGACCGGAAGATA+TGG 0.408576 4_1:+80392346 Msa0576330:CDS
GCATCCAATGTGGGCTGGAT+GGG 0.408688 4_1:-80396209 None:intergenic
CAGCTCCAACCAAGACATTT+GGG 0.414539 4_1:-80396270 None:intergenic
GGTGACACCATTAATGAGTT+TGG 0.414729 4_1:+80393500 Msa0576330:CDS
TTACTAGTTATTATGATTTG+AGG 0.414820 4_1:+80396524 Msa0576330:three_prime_UTR
TCACCTGCCACGTCGGATCC+TGG 0.416771 4_1:-80392407 None:intergenic
CAACCAAGACATTTGGGTTA+GGG 0.416934 4_1:-80396264 None:intergenic
GCTTCTCAATCGTGCCGTTA+CGG 0.417509 4_1:+80392496 Msa0576330:CDS
AAAAGGTGGGCTTATCTTCA+AGG 0.417922 4_1:+80395706 Msa0576330:intron
ATGTCCTACATGGTTGGTTA+TGG 0.418907 4_1:+80396130 Msa0576330:CDS
CAAAGAAAAGAATGCTCTTA+CGG 0.423314 4_1:-80391921 None:intergenic
CTTGTGCAGGAGGTGTTAAT+GGG 0.425782 4_1:+80395257 Msa0576330:intron
CACCATTAATGAGTTTGGTT+GGG 0.435935 4_1:+80393505 Msa0576330:CDS
AGTAAAATGGGCACACTGCC+CGG 0.438552 4_1:-80392970 None:intergenic
AGGGAATTGAGCTTCCTCTA+TGG 0.439505 4_1:-80396177 None:intergenic
AATGAAGCTGACCTGGCGTT+TGG 0.439836 4_1:-80395864 None:intergenic
CGTTTACATCACAGTAAAAT+GGG 0.440137 4_1:-80392982 None:intergenic
CAACCTTATTGGCATGGCTT+AGG 0.440764 4_1:-80395793 None:intergenic
TTCTTTGAAGGACAACGCTC+TGG 0.445149 4_1:+80391937 Msa0576330:CDS
TCGGAGCAAAAGGAGGAGTA+TGG 0.446397 4_1:-80391863 None:intergenic
CTCTATGGTGTATCCTCTGT+GGG 0.449617 4_1:-80396162 None:intergenic
GCCCACATTGGATGCAAAGC+TGG 0.453591 4_1:+80396217 Msa0576330:CDS
GGTTGGGACAACAAGCATGC+TGG 0.465263 4_1:+80393521 Msa0576330:CDS
GCCGGCGACAACATAAAGTT+CGG 0.465313 4_1:+80392131 Msa0576330:CDS
CTGCCACGTCGGATCCTGGA+TGG 0.466367 4_1:-80392403 None:intergenic
AGAAGCAATTTAGAGTAAGC+AGG 0.468543 4_1:-80392479 None:intergenic
CGTGACCGGCGGCTATTGTT+CGG 0.473569 4_1:-80391882 None:intergenic
TTCACCCACAGGGTTATAGT+TGG 0.474583 4_1:+80391773 Msa0576330:CDS
GGCTGCAGCGTGGTTGCACA+AGG 0.475533 4_1:+80393418 Msa0576330:CDS
CGCGTTGAAATCAGTGAGGT+GGG 0.476459 4_1:+80392235 Msa0576330:CDS
ACACCATTAATGAGTTTGGT+TGG 0.478749 4_1:+80393504 Msa0576330:CDS
TTGTTTCAGGTGGACTTGAC+CGG 0.479741 4_1:+80392095 Msa0576330:intron
CGGCTATTGTTCGGAGCAAA+AGG 0.480135 4_1:-80391873 None:intergenic
CATCCAGGATCCGACGTGGC+AGG 0.480184 4_1:+80392404 Msa0576330:CDS
CGTCTGATCAGCGTCTCCAC+TGG 0.482629 4_1:+80391968 Msa0576330:CDS
TATATCAATGCACCACTTGT+GGG 0.486411 4_1:+80396370 Msa0576330:CDS
GGCTCAGACTGCTGATAGAA+AGG 0.490540 4_1:-80396340 None:intergenic
GCAAGTCTATATGAAAGTTA+AGG 0.491551 4_1:+80396623 Msa0576330:three_prime_UTR
AGCAGCGGCAAGTGCAGCGG+CGG 0.492359 4_1:-80392432 None:intergenic
GGCTGGATGGGCTGAAACTG+AGG 0.494550 4_1:-80396197 None:intergenic
GTTGGGACAACAAGCATGCT+GGG 0.495472 4_1:+80393522 Msa0576330:CDS
CCGGCGACAACATAAAGTTC+GGG 0.496773 4_1:+80392132 Msa0576330:CDS
AAGATCGATGGGTCCCATCC+AGG 0.505900 4_1:+80392389 Msa0576330:CDS
GCGACGTCAAATATAGGTTC+CGG 0.506748 4_1:+80392278 Msa0576330:CDS
GTCTTGGTTGGAGCTGTAGT+TGG 0.509506 4_1:+80396277 Msa0576330:CDS
TTTATCGGACCACAACTGTT+GGG 0.511695 4_1:+80392328 Msa0576330:CDS
ATTCTTGGGGATAACCCGTT+GGG 0.513192 4_1:+80396106 Msa0576330:CDS
TGGTTGGAGCTGTAGTTGGT+GGG 0.515521 4_1:+80396281 Msa0576330:CDS
CCACAACTGTTGGGAGAGAC+CGG 0.516857 4_1:+80392337 Msa0576330:CDS
CATAAAGTTCGGGTTTCCGT+TGG 0.518098 4_1:+80392142 Msa0576330:CDS
GGCGTGGTGTTTGTTCAAGT+CGG 0.519329 4_1:+80392299 Msa0576330:CDS
AATGTTAACTTGTGCCATCA+AGG 0.521544 4_1:+80396648 Msa0576330:three_prime_UTR
AGCTGACCTGGCGTTTGGCA+AGG 0.523073 4_1:-80395859 None:intergenic
GATAGAAAGGCCTGGAATCA+GGG 0.523647 4_1:-80396327 None:intergenic
CATTCTTGGGGATAACCCGT+TGG 0.526848 4_1:+80396105 Msa0576330:CDS
CTTTATCGGACCACAACTGT+TGG 0.527242 4_1:+80392327 Msa0576330:CDS
GCTTTGCATCCAATGTGGGC+TGG 0.528057 4_1:-80396214 None:intergenic
CGCACAGTTTACAAGATCGA+TGG 0.529865 4_1:+80392377 Msa0576330:CDS
TTACAACGACGATGTTAGCT+TGG 0.531207 4_1:+80392168 Msa0576330:CDS
CAAAAGCCTTGCCAAACGCC+AGG 0.531345 4_1:+80395853 Msa0576330:CDS
GAGTAATGCAGGGGTGGCAG+TGG 0.531443 4_1:-80395831 None:intergenic
CCTAACCCAAATGTCTTGGT+TGG 0.533587 4_1:+80396265 Msa0576330:CDS
ACCGGAGGTTACTACGACGC+CGG 0.534390 4_1:+80392113 Msa0576330:CDS
GGAAGCAGCGGCAAGTGCAG+CGG 0.536448 4_1:-80392435 None:intergenic
TTCAACGCGTTACCTAGCTC+AGG 0.537877 4_1:-80392221 None:intergenic
AAACCCTAACCCAAATGTCT+TGG 0.539421 4_1:+80396261 Msa0576330:CDS
TTCCAGAGTCACGGCGCCAG+TGG 0.540232 4_1:-80391984 None:intergenic
CAGTGGAGACGCTGATCAGA+CGG 0.540515 4_1:-80391967 None:intergenic
TTCTTCCAACTATAACCCTG+TGG 0.540992 4_1:-80391778 None:intergenic
TGCCACGTCGGATCCTGGAT+GGG 0.546201 4_1:-80392402 None:intergenic
GGTGGGCTTATCTTCAAGGC+TGG 0.547963 4_1:+80395710 Msa0576330:intron
CCCGAACTTTATGTTGTCGC+CGG 0.549454 4_1:-80392132 None:intergenic
TTGGTTGGAGCTGTAGTTGG+TGG 0.549558 4_1:+80396280 Msa0576330:CDS
CCATGTAGGACATTCCCAAC+GGG 0.549622 4_1:-80396120 None:intergenic
TTGGGAATGTCCTACATGGT+TGG 0.550043 4_1:+80396124 Msa0576330:CDS
AATATAATATATCTATGTGG+TGG 0.550188 4_1:+80396444 Msa0576330:three_prime_UTR
ATGAATGTACCTTAGAAATG+AGG 0.553073 4_1:-80393553 None:intergenic
AGAGTAATGGGACCTGAGCT+AGG 0.557595 4_1:+80392209 Msa0576330:CDS
ATATATCAATGCACCACTTG+TGG 0.557918 4_1:+80396369 Msa0576330:CDS
ATGGGCACACTGCCCGGCGT+AGG 0.558129 4_1:-80392964 None:intergenic
ATTCACGACGGTGCCACCGC+CGG 0.559048 4_1:+80392006 Msa0576330:CDS
CCCGTTGGGAATGTCCTACA+TGG 0.560864 4_1:+80396120 Msa0576330:CDS
ACACATTACTCTTCACCCAC+AGG 0.560865 4_1:+80391762 Msa0576330:CDS
AGGGAACGAATCTGTAGTGT+TGG 0.563833 4_1:-80396308 None:intergenic
ATATAATATATCTATGTGGT+GGG 0.564951 4_1:+80396445 Msa0576330:three_prime_UTR
AATGAGGCTTACTCCGGCGG+TGG 0.574014 4_1:-80392019 None:intergenic
CCTCTATGGTGTATCCTCTG+TGG 0.576842 4_1:-80396163 None:intergenic
CGTAACGTATCCATATCTTC+CGG 0.577286 4_1:-80392356 None:intergenic
GGGCTTATCTTCAAGGCTGG+TGG 0.577298 4_1:+80395713 Msa0576330:CDS
GAAATCAGTGAGGTGGGGAA+CGG 0.581918 4_1:+80392241 Msa0576330:CDS
TCCAGCTTTGCATCCAATGT+GGG 0.583568 4_1:-80396218 None:intergenic
ATGGCACAACCTTATTGGCA+TGG 0.584108 4_1:-80395799 None:intergenic
GCCGGCGTCGTAGTAACCTC+CGG 0.585051 4_1:-80392114 None:intergenic
TTATACAATGTGCAACATCA+AGG 0.588472 4_1:-80396418 None:intergenic
CACATTACTCTTCACCCACA+GGG 0.588883 4_1:+80391763 Msa0576330:CDS
ACGCGTTGAAATCAGTGAGG+TGG 0.592542 4_1:+80392234 Msa0576330:CDS
ACTTGTGCGTGAGAAAATCC+AGG 0.592850 4_1:-80395341 None:intergenic
TATGGCGAGGACGCGAAATG+TGG 0.593753 4_1:-80391845 None:intergenic
TTGCTCCGAACAATAGCCGC+CGG 0.597884 4_1:+80391877 Msa0576330:CDS
GCACAGTTTACAAGATCGAT+GGG 0.599104 4_1:+80392378 Msa0576330:CDS
GCTGGATGGGCTGAAACTGA+GGG 0.599624 4_1:-80396196 None:intergenic
TGAAAAGGGAAAAGAAAATG+GGG 0.601105 4_1:+80396493 Msa0576330:three_prime_UTR
AGTGGAGACGCTGATCAGAC+GGG 0.602320 4_1:-80391966 None:intergenic
TCAGCCCATCCAGCCCACAT+TGG 0.602704 4_1:+80396205 Msa0576330:CDS
ATACAGTAACAGCCTACGCC+GGG 0.603079 4_1:+80392952 Msa0576330:CDS
CTAGGTTAACTACATTCTTG+GGG 0.606445 4_1:+80396093 Msa0576330:intron
CCGGTCTCTCCCAACAGTTG+TGG 0.609233 4_1:-80392337 None:intergenic
TCTTCCAACTATAACCCTGT+GGG 0.610016 4_1:-80391777 None:intergenic
AGACTGCTGATAGAAAGGCC+TGG 0.611163 4_1:-80396335 None:intergenic
GTGGCAGTGGTGTCACCACA+TGG 0.614304 4_1:-80395818 None:intergenic
ATGAAAGCGACGCACCGTAA+CGG 0.614765 4_1:-80392510 None:intergenic
ATCCAGCTTTGCATCCAATG+TGG 0.619352 4_1:-80396219 None:intergenic
AGCATCGTGATAGTCGTGAC+CGG 0.626278 4_1:-80391896 None:intergenic
CGTCGTGAATTCCAGAGTCA+CGG 0.628890 4_1:-80391993 None:intergenic
TGAAATGAGGCTTACTCCGG+CGG 0.629033 4_1:-80392022 None:intergenic
GGAATAAGCTAGTAACAGGA+AGG 0.629980 4_1:-80395765 None:intergenic
CATACAGTAACAGCCTACGC+CGG 0.630726 4_1:+80392951 Msa0576330:CDS
AACGAATCTGTAGTGTTGGT+AGG 0.633183 4_1:-80396304 None:intergenic
GCACAAGTTCAATATTCCCC+AGG 0.635190 4_1:+80395356 Msa0576330:CDS
ACCATGTAGGACATTCCCAA+CGG 0.636931 4_1:-80396121 None:intergenic
CTATTGTTCGGAGCAAAAGG+AGG 0.639799 4_1:-80391870 None:intergenic
GCCAATAAGGTTGTGCCATG+TGG 0.639947 4_1:+80395803 Msa0576330:CDS
TTTACCATAACCAACCATGT+AGG 0.642081 4_1:-80396134 None:intergenic
AGCTAGTAACAGGAAGGACA+AGG 0.643966 4_1:-80395759 None:intergenic
TGGTGCATTGATATATGTCG+TGG 0.645002 4_1:-80396362 None:intergenic
TCTAATATAATATATCTATG+TGG 0.651175 4_1:+80396441 Msa0576330:three_prime_UTR
ATCGTCGTTGTAAACGCCAA+CGG 0.655402 4_1:-80392158 None:intergenic
CCACAGAGGATACACCATAG+AGG 0.656279 4_1:+80396163 Msa0576330:CDS
GGCGGTTTCACCTGCCACGT+CGG 0.660020 4_1:-80392414 None:intergenic
TCTGAACACGATGGAAGCAG+CGG 0.661950 4_1:-80392447 None:intergenic
AAAGCGAGCAGACCCACAAG+TGG 0.662208 4_1:-80396382 None:intergenic
TTTCAGGTGGACTTGACCGG+AGG 0.664744 4_1:+80392098 Msa0576330:intron
GCAAAAGGAGGAGTATGGCG+AGG 0.673126 4_1:-80391858 None:intergenic
GTCCCATCCAGGATCCGACG+TGG 0.677907 4_1:+80392400 Msa0576330:CDS
GTCAAATATAGGTTCCGGCG+TGG 0.689424 4_1:+80392283 Msa0576330:CDS
AGTTGCTTTGGGCTGCAGCG+TGG 0.693038 4_1:+80393408 Msa0576330:CDS
TCTGTATAGACGTCTACGCG+AGG 0.693382 4_1:-80393441 None:intergenic
GGTGCATTGATATATGTCGT+GGG 0.694250 4_1:-80396361 None:intergenic
ATCGTGATAGTCGTGACCGG+CGG 0.702934 4_1:-80391893 None:intergenic
GAGTTTGCTGACAGACATCG+TGG 0.705042 4_1:+80392926 Msa0576330:CDS
GCGTTGAAATCAGTGAGGTG+GGG 0.709801 4_1:+80392236 Msa0576330:CDS
CGTGACTCTGGAATTCACGA+CGG 0.714587 4_1:+80391994 Msa0576330:CDS
ATCACGTGATCTGAACACGA+TGG 0.718797 4_1:-80392456 None:intergenic
AGAATACATTATTCGTAACG+AGG 0.719570 4_1:+80393463 Msa0576330:CDS
GACTTGAACAAACACCACGC+CGG 0.721498 4_1:-80392297 None:intergenic
ATGGTAAACGCTACCCACAG+AGG 0.727149 4_1:+80396149 Msa0576330:CDS
GTAACGCGTTGAAATCAGTG+AGG 0.807841 4_1:+80392231 Msa0576330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTAATTTAATTAAT+TGG + chr4_1:80393361-80393380 Msa0576330:intron 0.0%
!!! TTTAGTTTATTTAATATAAC+CGG - chr4_1:80394160-80394179 None:intergenic 10.0%
!! AATTAAATGAAACTAATTAA+GGG - chr4_1:80394767-80394786 None:intergenic 10.0%
!! AAATTAAATGAAACTAATTA+AGG - chr4_1:80394768-80394787 None:intergenic 10.0%
!!! TAATATTCATATTTTATTGA+TGG - chr4_1:80395231-80395250 None:intergenic 10.0%
!! TAAAAAAATGAAGAAAAGAA+AGG - chr4_1:80392591-80392610 None:intergenic 15.0%
!!! TTAATTTGACTTTATCTAAT+TGG + chr4_1:80394254-80394273 Msa0576330:intron 15.0%
!! AATCTCATAAATAAATTCAA+TGG - chr4_1:80394600-80394619 None:intergenic 15.0%
!! ATTAAATGAAACTAATTAAG+GGG - chr4_1:80394766-80394785 None:intergenic 15.0%
!!! CATTTAATTTTTTTTAGTTC+TGG + chr4_1:80394778-80394797 Msa0576330:intron 15.0%
!! TTATTTAAATGCTATAATCA+CGG - chr4_1:80395448-80395467 None:intergenic 15.0%
!! AAAAGAAAAAACATTAATGA+TGG - chr4_1:80395517-80395536 None:intergenic 15.0%
!! TCTAATATAATATATCTATG+TGG + chr4_1:80396441-80396460 Msa0576330:three_prime_UTR 15.0%
!! GAAAGAAAAAAACAGAAAAA+TGG + chr4_1:80391798-80391817 Msa0576330:CDS 20.0%
!!! CTAAAAAAAGCAATTTTGTT+TGG + chr4_1:80392645-80392664 Msa0576330:intron 20.0%
!! AAAAAGTGAAATTAAATTCC+CGG - chr4_1:80392765-80392784 None:intergenic 20.0%
!!! TTTTTTTCTGTTATGAATCA+CGG + chr4_1:80392804-80392823 Msa0576330:intron 20.0%
!!! TAAAATTTTCCGTTAAGATA+TGG + chr4_1:80392858-80392877 Msa0576330:intron 20.0%
!!! TTGTTATTGTCCAATAATAA+TGG + chr4_1:80393192-80393211 Msa0576330:intron 20.0%
!!! CAATTTTCAACAACTTTTTA+AGG - chr4_1:80393232-80393251 None:intergenic 20.0%
!! CTTAAAAAGTTGTTGAAAAT+TGG + chr4_1:80393230-80393249 Msa0576330:intron 20.0%
!! GTAATATAGTAAGTATTAAG+AGG - chr4_1:80393272-80393291 None:intergenic 20.0%
!! ATGATTAATGTATGCATATT+GGG - chr4_1:80393943-80393962 None:intergenic 20.0%
!! TATGATTAATGTATGCATAT+TGG - chr4_1:80393944-80393963 None:intergenic 20.0%
!!! ATCTAATCAAGTTTAAGATA+AGG - chr4_1:80394112-80394131 None:intergenic 20.0%
!!! TTTCATTTTTAAGTTTCATG+TGG + chr4_1:80394497-80394516 Msa0576330:intron 20.0%
!!! TTCATTTTTAAGTTTCATGT+GGG + chr4_1:80394498-80394517 Msa0576330:intron 20.0%
!! GCTTGAATAATAAACAAAAA+CGG - chr4_1:80394526-80394545 None:intergenic 20.0%
!!! AATTTGTCTTTAAAACTTGT+AGG + chr4_1:80394638-80394657 Msa0576330:intron 20.0%
!!! ATTTTTTTTAGTTCTGGAAA+TGG + chr4_1:80394784-80394803 Msa0576330:intron 20.0%
!! TTAAAAAAAAGTTACCACAA+TGG - chr4_1:80394960-80394979 None:intergenic 20.0%
!!! CTTTTTATTTTATATTGCAC+AGG - chr4_1:80395208-80395227 None:intergenic 20.0%
!!! AATATTATTTTATCTTGTGC+AGG + chr4_1:80395244-80395263 Msa0576330:intron 20.0%
!! CTCAAAAGTCAAAAATAAAT+GGG - chr4_1:80395413-80395432 None:intergenic 20.0%
!! TCTCAAAAGTCAAAAATAAA+TGG - chr4_1:80395414-80395433 None:intergenic 20.0%
!!! TTATTTTTGACTTTTGAGAA+AGG + chr4_1:80395415-80395434 Msa0576330:intron 20.0%
!!! TAATGTTTTTTCTTTTTGCA+AGG + chr4_1:80395521-80395540 Msa0576330:intron 20.0%
!! AATATAATATATCTATGTGG+TGG + chr4_1:80396444-80396463 Msa0576330:three_prime_UTR 20.0%
!! ATATAATATATCTATGTGGT+GGG + chr4_1:80396445-80396464 Msa0576330:three_prime_UTR 20.0%
!! TTACTAGTTATTATGATTTG+AGG + chr4_1:80396524-80396543 Msa0576330:three_prime_UTR 20.0%
! ATTAAAAAACAGAGCAATGT+AGG - chr4_1:80392066-80392085 None:intergenic 25.0%
!!! CTCTGTTTTTTAATTTGTTG+TGG + chr4_1:80392072-80392091 Msa0576330:intron 25.0%
!!! ATTGATTTTGGAAGAGTAAT+GGG + chr4_1:80392197-80392216 Msa0576330:CDS 25.0%
!!! ACCACTTTTTAAATTTACCA+CGG - chr4_1:80392702-80392721 None:intergenic 25.0%
!! ATTTTCTCACCATATCTTAA+CGG - chr4_1:80392870-80392889 None:intergenic 25.0%
! TCACAAAAGTTGTTGAAAAT+TGG - chr4_1:80393111-80393130 None:intergenic 25.0%
! ATAACAATAGAGAGAGAAAA+AGG - chr4_1:80393179-80393198 None:intergenic 25.0%
! TTATTGTCCAATAATAATGG+AGG + chr4_1:80393195-80393214 Msa0576330:intron 25.0%
!!! TCTCTAAGATTAGTAGTATT+TGG + chr4_1:80393302-80393321 Msa0576330:intron 25.0%
! ATTAATTGGAAAATCACTTG+TGG + chr4_1:80393375-80393394 Msa0576330:intron 25.0%
!! ACTAAGTACTACAGTATTTT+AGG + chr4_1:80393617-80393636 Msa0576330:intron 25.0%
!! ATTATTTGTTACTATGTGTG+TGG + chr4_1:80393710-80393729 Msa0576330:intron 25.0%
!! TTATTTGTTACTATGTGTGT+GGG + chr4_1:80393711-80393730 Msa0576330:intron 25.0%
! TGTGGTGTGAAAATAATTAA+TGG - chr4_1:80394034-80394053 None:intergenic 25.0%
!! ATTTGACTTTATCTAATTGG+TGG + chr4_1:80394257-80394276 Msa0576330:intron 25.0%
!! TTTGACTTTATCTAATTGGT+GGG + chr4_1:80394258-80394277 Msa0576330:intron 25.0%
! TATGAGATTGATTGATATCA+AGG + chr4_1:80394611-80394630 Msa0576330:intron 25.0%
! ATGAGATTGATTGATATCAA+GGG + chr4_1:80394612-80394631 Msa0576330:intron 25.0%
! TGAAATTGTGCAGAAAATAA+TGG - chr4_1:80394850-80394869 None:intergenic 25.0%
! TTATCTATCCAAAAAGTCAT+TGG + chr4_1:80395105-80395124 Msa0576330:intron 25.0%
! TATCTATCCAAAAAGTCATT+GGG + chr4_1:80395106-80395125 Msa0576330:intron 25.0%
! AAAAACATTAATGATGGCTT+AGG - chr4_1:80395511-80395530 None:intergenic 25.0%
! GTTGGTTAACAATGTAAAAA+AGG + chr4_1:80395689-80395708 Msa0576330:intron 25.0%
! GTTAACAATGTAAAAAAGGT+GGG + chr4_1:80395693-80395712 Msa0576330:intron 25.0%
! TGATGTTGAAAACAAGAAAT+TGG - chr4_1:80395914-80395933 None:intergenic 25.0%
! TTGAAAAGGGAAAAGAAAAT+GGG + chr4_1:80396492-80396511 Msa0576330:three_prime_UTR 25.0%
!!! TTGATGATGATTTTATGAAG+TGG + chr4_1:80396601-80396620 Msa0576330:three_prime_UTR 25.0%
CAAAGAAAAGAATGCTCTTA+CGG - chr4_1:80391924-80391943 None:intergenic 30.0%
!!! AAGAGCATTCTTTTCTTTGA+AGG + chr4_1:80391925-80391944 Msa0576330:CDS 30.0%
!! TAATTTGTTGTGGTTGTTTC+AGG + chr4_1:80392082-80392101 Msa0576330:intron 30.0%
!! GATTGATTTTGGAAGAGTAA+TGG + chr4_1:80392196-80392215 Msa0576330:CDS 30.0%
ACCGTGGTAAATTTAAAAAG+TGG + chr4_1:80392698-80392717 Msa0576330:intron 30.0%
CGTTTACATCACAGTAAAAT+GGG - chr4_1:80392985-80393004 None:intergenic 30.0%
! CCATTTTACTGTGATGTAAA+CGG + chr4_1:80392983-80393002 Msa0576330:CDS 30.0%
!! GTAGGAGTATTTAATACTTC+AGG + chr4_1:80393069-80393088 Msa0576330:intron 30.0%
AAAAGGAAGAGAGAGAATAA+AGG - chr4_1:80393162-80393181 None:intergenic 30.0%
! CCTTTTTCCTCCATTATTAT+TGG - chr4_1:80393205-80393224 None:intergenic 30.0%
! CCAATAATAATGGAGGAAAA+AGG + chr4_1:80393202-80393221 Msa0576330:intron 30.0%
AGAATACATTATTCGTAACG+AGG + chr4_1:80393463-80393482 Msa0576330:CDS 30.0%
GATTAATGTCCTCATTTCTA+AGG + chr4_1:80393544-80393563 Msa0576330:CDS 30.0%
ATGAATGTACCTTAGAAATG+AGG - chr4_1:80393556-80393575 None:intergenic 30.0%
CTGCTTCAATGAAATTAACA+GGG - chr4_1:80393593-80393612 None:intergenic 30.0%
AGGAATAATAGAGTCCTAAT+TGG - chr4_1:80393909-80393928 None:intergenic 30.0%
TAGGACTCTATTATTCCTAT+TGG + chr4_1:80393911-80393930 Msa0576330:intron 30.0%
TAATGTATGCATATTGGGAA+TGG - chr4_1:80393938-80393957 None:intergenic 30.0%
! TATAACCGGTTTACTATAAG+CGG - chr4_1:80394146-80394165 None:intergenic 30.0%
ATGTTTATGTGAGTACAGAT+TGG + chr4_1:80394353-80394372 Msa0576330:intron 30.0%
! TAGAAAAAGCTTTATCCGTT+TGG + chr4_1:80394394-80394413 Msa0576330:intron 30.0%
TTTCAATACCAATCACCAAA+CGG - chr4_1:80394412-80394431 None:intergenic 30.0%
TCAAGATAGCAATGAGAAAA+GGG + chr4_1:80394433-80394452 Msa0576330:intron 30.0%
ATCCAAAGTTCCAATTATCA+CGG - chr4_1:80394557-80394576 None:intergenic 30.0%
TGAGATTGATTGATATCAAG+GGG + chr4_1:80394613-80394632 Msa0576330:intron 30.0%
AAACTTGTAGGACTAGAATT+TGG + chr4_1:80394650-80394669 Msa0576330:intron 30.0%
AACTTGTAGGACTAGAATTT+GGG + chr4_1:80394651-80394670 Msa0576330:intron 30.0%
TGTTCCAAATGTTTACGATA+TGG - chr4_1:80394733-80394752 None:intergenic 30.0%
!!! TTTTTAGTTCTGGAAATGGA+TGG + chr4_1:80394788-80394807 Msa0576330:intron 30.0%
CACAATTTCACTTTCTATCA+GGG + chr4_1:80394860-80394879 Msa0576330:intron 30.0%
! AAGAAATATGATGTTGATGG+GGG - chr4_1:80394916-80394935 None:intergenic 30.0%
CAAGAAATATGATGTTGATG+GGG - chr4_1:80394917-80394936 None:intergenic 30.0%
GCAAGAAATATGATGTTGAT+GGG - chr4_1:80394918-80394937 None:intergenic 30.0%
TGCAAGAAATATGATGTTGA+TGG - chr4_1:80394919-80394938 None:intergenic 30.0%
! TACAAAACCCAATGACTTTT+TGG - chr4_1:80395116-80395135 None:intergenic 30.0%
!! AAAAGTCATTGGGTTTTGTA+CGG + chr4_1:80395116-80395135 Msa0576330:intron 30.0%
ATATTGCACAGGTTAATAGT+AGG - chr4_1:80395197-80395216 None:intergenic 30.0%
!! ATTATTTTATCTTGTGCAGG+AGG + chr4_1:80395247-80395266 Msa0576330:intron 30.0%
TTTATTTGTTCAACATTGCC+TGG + chr4_1:80395323-80395342 Msa0576330:CDS 30.0%
ATGAGGGAATATATATACCT+GGG - chr4_1:80395376-80395395 None:intergenic 30.0%
AATGAGGGAATATATATACC+TGG - chr4_1:80395377-80395396 None:intergenic 30.0%
ACATACAAACACTCAATCTA+AGG - chr4_1:80395552-80395571 None:intergenic 30.0%
ACTGTGCACAATACTAAATA+GGG - chr4_1:80395591-80395610 None:intergenic 30.0%
AACTGTGCACAATACTAAAT+AGG - chr4_1:80395592-80395611 None:intergenic 30.0%
CACAGTTATTATTGCATAGA+CGG + chr4_1:80395605-80395624 Msa0576330:intron 30.0%
AAAGAAACAAACAAACACTG+TGG - chr4_1:80395643-80395662 None:intergenic 30.0%
! AGAGGAAGTTTGAGTTATTT+AGG - chr4_1:80395666-80395685 None:intergenic 30.0%
ACATTGTTAACCAACAAAAG+AGG - chr4_1:80395684-80395703 None:intergenic 30.0%
GGTTAACAATGTAAAAAAGG+TGG + chr4_1:80395692-80395711 Msa0576330:intron 30.0%
AATTGGAATAAGCTAGTAAC+AGG - chr4_1:80395772-80395791 None:intergenic 30.0%
TCAACATCAGACAAAACTAA+CGG + chr4_1:80395925-80395944 Msa0576330:intron 30.0%
ACGTGATATATACACAAAGT+TGG + chr4_1:80396006-80396025 Msa0576330:intron 30.0%
TACTAGGTTAACTACATTCT+TGG + chr4_1:80396091-80396110 Msa0576330:intron 30.0%
ACTAGGTTAACTACATTCTT+GGG + chr4_1:80396092-80396111 Msa0576330:intron 30.0%
TTATACAATGTGCAACATCA+AGG - chr4_1:80396421-80396440 None:intergenic 30.0%
CTTGAAAAGGGAAAAGAAAA+TGG + chr4_1:80396491-80396510 Msa0576330:three_prime_UTR 30.0%
TGAAAAGGGAAAAGAAAATG+GGG + chr4_1:80396493-80396512 Msa0576330:three_prime_UTR 30.0%
GCAAGTCTATATGAAAGTTA+AGG + chr4_1:80396623-80396642 Msa0576330:three_prime_UTR 30.0%
TTAAAGGCGACGTCAAATAT+AGG + chr4_1:80392272-80392291 Msa0576330:CDS 35.0%
! AGAAGCAATTTAGAGTAAGC+AGG - chr4_1:80392482-80392501 None:intergenic 35.0%
TTATGAATCACGGAGTTAGT+TGG + chr4_1:80392814-80392833 Msa0576330:intron 35.0%
CCGTTTACATCACAGTAAAA+TGG - chr4_1:80392986-80393005 None:intergenic 35.0%
ACAGAACAATACCTCTTTGA+TGG + chr4_1:80393037-80393056 Msa0576330:intron 35.0%
ACTGAATAGTACCATCAAAG+AGG - chr4_1:80393051-80393070 None:intergenic 35.0%
! CTTTGATGGTACTATTCAGT+AGG + chr4_1:80393051-80393070 Msa0576330:intron 35.0%
! GGAAAATCACTTGTGGTTTT+AGG + chr4_1:80393382-80393401 Msa0576330:intron 35.0%
!!! GTTTTAGGATGAGTTGCTTT+GGG + chr4_1:80393397-80393416 Msa0576330:intron 35.0%
ACACCATTAATGAGTTTGGT+TGG + chr4_1:80393504-80393523 Msa0576330:CDS 35.0%
CACCATTAATGAGTTTGGTT+GGG + chr4_1:80393505-80393524 Msa0576330:CDS 35.0%
CTTCAATGAAATTAACAGGG+AGG - chr4_1:80393590-80393609 None:intergenic 35.0%
GCTGCTTCAATGAAATTAAC+AGG - chr4_1:80393594-80393613 None:intergenic 35.0%
AGGGAACTTTATCACTAGAT+TGG - chr4_1:80393848-80393867 None:intergenic 35.0%
!! TTAAGTGAAGTGCTCTGTTT+TGG - chr4_1:80394006-80394025 None:intergenic 35.0%
GTAATCCGCTTATAGTAAAC+CGG + chr4_1:80394138-80394157 Msa0576330:intron 35.0%
TATGCATGGTACAACAAGAA+AGG + chr4_1:80394328-80394347 Msa0576330:intron 35.0%
ATGCATGGTACAACAAGAAA+GGG + chr4_1:80394329-80394348 Msa0576330:intron 35.0%
GTCAAGATAGCAATGAGAAA+AGG + chr4_1:80394432-80394451 Msa0576330:intron 35.0%
CAAGATAGCAATGAGAAAAG+GGG + chr4_1:80394434-80394453 Msa0576330:intron 35.0%
TTCCGTGATAATTGGAACTT+TGG + chr4_1:80394552-80394571 Msa0576330:intron 35.0%
GCTTTAATCTGAACCAAACT+GGG + chr4_1:80394688-80394707 Msa0576330:intron 35.0%
CCAAATGTTTACGATATGGA+GGG - chr4_1:80394729-80394748 None:intergenic 35.0%
TCCAAATGTTTACGATATGG+AGG - chr4_1:80394730-80394749 None:intergenic 35.0%
TTGTGCAGAAAATAATGGTG+AGG - chr4_1:80394845-80394864 None:intergenic 35.0%
GCACAATTTCACTTTCTATC+AGG + chr4_1:80394859-80394878 Msa0576330:intron 35.0%
CAATGGTGTGTTACAAGAAA+AGG - chr4_1:80394943-80394962 None:intergenic 35.0%
TTTCTTGTAACACACCATTG+TGG + chr4_1:80394943-80394962 Msa0576330:intron 35.0%
!! AAAGTCATTGGGTTTTGTAC+GGG + chr4_1:80395117-80395136 Msa0576330:intron 35.0%
TGAGGGAATATATATACCTG+GGG - chr4_1:80395375-80395394 None:intergenic 35.0%
GGCAAAACAAAACACAATGA+GGG - chr4_1:80395392-80395411 None:intergenic 35.0%
TATTGCATAGACGGCAATAT+TGG + chr4_1:80395614-80395633 Msa0576330:intron 35.0%
! ACTCAAACTTCCTCTTTTGT+TGG + chr4_1:80395671-80395690 Msa0576330:intron 35.0%
! TTCCCCGTTGATTAATTCTT+TGG + chr4_1:80395886-80395905 Msa0576330:intron 35.0%
! TCCCCGTTGATTAATTCTTT+GGG + chr4_1:80395887-80395906 Msa0576330:intron 35.0%
TCCCAAAGAATTAATCAACG+GGG - chr4_1:80395891-80395910 None:intergenic 35.0%
GTCCCAAAGAATTAATCAAC+GGG - chr4_1:80395892-80395911 None:intergenic 35.0%
GGTCCCAAAGAATTAATCAA+CGG - chr4_1:80395893-80395912 None:intergenic 35.0%
! CGTTGCTTTCATTTACTACT+AGG + chr4_1:80396075-80396094 Msa0576330:intron 35.0%
CTAGGTTAACTACATTCTTG+GGG + chr4_1:80396093-80396112 Msa0576330:intron 35.0%
TTTACCATAACCAACCATGT+AGG - chr4_1:80396137-80396156 None:intergenic 35.0%
ATATATCAATGCACCACTTG+TGG + chr4_1:80396369-80396388 Msa0576330:CDS 35.0%
TATATCAATGCACCACTTGT+GGG + chr4_1:80396370-80396389 Msa0576330:CDS 35.0%
ACCCTCTATTGTTCTTGAAA+AGG + chr4_1:80396478-80396497 Msa0576330:three_prime_UTR 35.0%
!! CCCTTTTCAAGAACAATAGA+GGG - chr4_1:80396482-80396501 None:intergenic 35.0%
CCCTCTATTGTTCTTGAAAA+GGG + chr4_1:80396479-80396498 Msa0576330:three_prime_UTR 35.0%
!! TCCCTTTTCAAGAACAATAG+AGG - chr4_1:80396483-80396502 None:intergenic 35.0%
!! AATGTTAACTTGTGCCATCA+AGG + chr4_1:80396648-80396667 Msa0576330:three_prime_UTR 35.0%
TCTTCCAACTATAACCCTGT+GGG - chr4_1:80391780-80391799 None:intergenic 40.0%
TTCTTCCAACTATAACCCTG+TGG - chr4_1:80391781-80391800 None:intergenic 40.0%
ATGTGAAATGAGGCTTACTC+CGG - chr4_1:80392028-80392047 None:intergenic 40.0%
! ACAGAGCACTATGTGAAATG+AGG - chr4_1:80392038-80392057 None:intergenic 40.0%
! TTTGTTGTGGTTGTTTCAGG+TGG + chr4_1:80392085-80392104 Msa0576330:intron 40.0%
TTACAACGACGATGTTAGCT+TGG + chr4_1:80392168-80392187 Msa0576330:CDS 40.0%
!! GCTTGGAGTGTGATTGATTT+TGG + chr4_1:80392185-80392204 Msa0576330:CDS 40.0%
!!! GGGAACGGACTATCTTTTAA+AGG + chr4_1:80392256-80392275 Msa0576330:CDS 40.0%
TCAAGTCGGTGATCCTTTAT+CGG + chr4_1:80392313-80392332 Msa0576330:CDS 40.0%
TTTATCGGACCACAACTGTT+GGG + chr4_1:80392328-80392347 Msa0576330:CDS 40.0%
CGTAACGTATCCATATCTTC+CGG - chr4_1:80392359-80392378 None:intergenic 40.0%
GCACAGTTTACAAGATCGAT+GGG + chr4_1:80392378-80392397 Msa0576330:CDS 40.0%
GAGAGAAGATTGCATGGAAT+GGG - chr4_1:80392537-80392556 None:intergenic 40.0%
AGAGAGAAGATTGCATGGAA+TGG - chr4_1:80392538-80392557 None:intergenic 40.0%
! TAAATTCCCGGTAAAGTGCT+TGG - chr4_1:80392753-80392772 None:intergenic 40.0%
CTGTGATGTAAACGGTTATC+AGG + chr4_1:80392991-80393010 Msa0576330:CDS 40.0%
!!! GGTTTTAGGATGAGTTGCTT+TGG + chr4_1:80393396-80393415 Msa0576330:intron 40.0%
GGTGACACCATTAATGAGTT+TGG + chr4_1:80393500-80393519 Msa0576330:CDS 40.0%
GTCCCAACCAAACTCATTAA+TGG - chr4_1:80393510-80393529 None:intergenic 40.0%
GATAAAGTTCCCTTATCACG+TGG + chr4_1:80393855-80393874 Msa0576330:intron 40.0%
ACAAACAGACCACGTGATAA+GGG - chr4_1:80393867-80393886 None:intergenic 40.0%
GTGATGCACTTTCTCCAATT+AGG + chr4_1:80393892-80393911 Msa0576330:intron 40.0%
CATATTGGGAATGGACCAAT+AGG - chr4_1:80393929-80393948 None:intergenic 40.0%
!!! CTGTTTTGGTGTTTTGCTTG+TGG - chr4_1:80393992-80394011 None:intergenic 40.0%
CAGAAGAAACACAATGCATG+TGG - chr4_1:80394052-80394071 None:intergenic 40.0%
! TATCTAATTGGTGGGTCACA+TGG + chr4_1:80394266-80394285 Msa0576330:intron 40.0%
GAATCTATGACACGATGAAG+AGG + chr4_1:80394288-80394307 Msa0576330:intron 40.0%
! AGCTTTATCCGTTTGGTGAT+TGG + chr4_1:80394401-80394420 Msa0576330:intron 40.0%
GCAAGACATTCCGTGATAAT+TGG + chr4_1:80394544-80394563 Msa0576330:intron 40.0%
TTGTAGGACTAGAATTTGGG+TGG + chr4_1:80394654-80394673 Msa0576330:intron 40.0%
CGCTTTAATCTGAACCAAAC+TGG + chr4_1:80394687-80394706 Msa0576330:intron 40.0%
TTAATCTGAACCAAACTGGG+TGG + chr4_1:80394691-80394710 Msa0576330:intron 40.0%
CCCTCCATATCGTAAACATT+TGG + chr4_1:80394726-80394745 Msa0576330:intron 40.0%
! TGTTGATGGGGGCTTAAAAA+AGG - chr4_1:80394905-80394924 None:intergenic 40.0%
! GTTTTGTACGGGATTCTGTT+AGG + chr4_1:80395128-80395147 Msa0576330:intron 40.0%
ATTCTGTTAGGTCAGAGACA+CGG + chr4_1:80395140-80395159 Msa0576330:intron 40.0%
GGGCAAAACAAAACACAATG+AGG - chr4_1:80395393-80395412 None:intergenic 40.0%
TTAATGATGGCTTAGGCCTT+TGG - chr4_1:80395504-80395523 None:intergenic 40.0%
! AAAAGGTGGGCTTATCTTCA+AGG + chr4_1:80395706-80395725 Msa0576330:intron 40.0%
GGAATAAGCTAGTAACAGGA+AGG - chr4_1:80395768-80395787 None:intergenic 40.0%
ATTGGCATGGCTTAGGTAAT+TGG - chr4_1:80395789-80395808 None:intergenic 40.0%
TTACCTAAGCCATGCCAATA+AGG + chr4_1:80395790-80395809 Msa0576330:CDS 40.0%
!! AAGGCTTTTGAGTAATGCAG+GGG - chr4_1:80395843-80395862 None:intergenic 40.0%
!! CAAGGCTTTTGAGTAATGCA+GGG - chr4_1:80395844-80395863 None:intergenic 40.0%
! ATGTCCTACATGGTTGGTTA+TGG + chr4_1:80396130-80396149 Msa0576330:CDS 40.0%
! AGACATTTGGGTTAGGGTTT+GGG - chr4_1:80396261-80396280 None:intergenic 40.0%
! AAGACATTTGGGTTAGGGTT+TGG - chr4_1:80396262-80396281 None:intergenic 40.0%
AAACCCTAACCCAAATGTCT+TGG + chr4_1:80396261-80396280 Msa0576330:CDS 40.0%
! CAACCAAGACATTTGGGTTA+GGG - chr4_1:80396267-80396286 None:intergenic 40.0%
!! AACGAATCTGTAGTGTTGGT+AGG - chr4_1:80396307-80396326 None:intergenic 40.0%
! GGTGCATTGATATATGTCGT+GGG - chr4_1:80396364-80396383 None:intergenic 40.0%
! TGGTGCATTGATATATGTCG+TGG - chr4_1:80396365-80396384 None:intergenic 40.0%
!! TATCTATGTGGTGGGCAAAA+TGG + chr4_1:80396453-80396472 Msa0576330:three_prime_UTR 40.0%
ACACATTACTCTTCACCCAC+AGG + chr4_1:80391762-80391781 Msa0576330:CDS 45.0%
CACATTACTCTTCACCCACA+GGG + chr4_1:80391763-80391782 Msa0576330:CDS 45.0%
TTCACCCACAGGGTTATAGT+TGG + chr4_1:80391773-80391792 Msa0576330:CDS 45.0%
CTATTGTTCGGAGCAAAAGG+AGG - chr4_1:80391873-80391892 None:intergenic 45.0%
! TTCTTTGAAGGACAACGCTC+TGG + chr4_1:80391937-80391956 Msa0576330:CDS 45.0%
! TTGTTTCAGGTGGACTTGAC+CGG + chr4_1:80392095-80392114 Msa0576330:intron 45.0%
! CATAAAGTTCGGGTTTCCGT+TGG + chr4_1:80392142-80392161 Msa0576330:CDS 45.0%
ATCGTCGTTGTAAACGCCAA+CGG - chr4_1:80392161-80392180 None:intergenic 45.0%
GTAACGCGTTGAAATCAGTG+AGG + chr4_1:80392231-80392250 Msa0576330:CDS 45.0%
GCGACGTCAAATATAGGTTC+CGG + chr4_1:80392278-80392297 Msa0576330:CDS 45.0%
CAACAGTTGTGGTCCGATAA+AGG - chr4_1:80392329-80392348 None:intergenic 45.0%
CTTTATCGGACCACAACTGT+TGG + chr4_1:80392327-80392346 Msa0576330:CDS 45.0%
CGCACAGTTTACAAGATCGA+TGG + chr4_1:80392377-80392396 Msa0576330:CDS 45.0%
ATCACGTGATCTGAACACGA+TGG - chr4_1:80392459-80392478 None:intergenic 45.0%
GAGAGAGAGAGAAGATTGCA+TGG - chr4_1:80392543-80392562 None:intergenic 45.0%
GTAGAAAACTAGCGAAACCG+TGG + chr4_1:80392682-80392701 Msa0576330:intron 45.0%
GGTGAGAAAATGACCGTTGA+TGG + chr4_1:80392879-80392898 Msa0576330:intron 45.0%
! GAGAAAATGACCGTTGATGG+TGG + chr4_1:80392882-80392901 Msa0576330:intron 45.0%
!!! AACGAGGTTGTTTTGAGAGC+TGG + chr4_1:80393479-80393498 Msa0576330:CDS 45.0%
AACGGGGAATGCAAGACAAT+AGG - chr4_1:80393780-80393799 None:intergenic 45.0%
ATTGTCTTGCATTCCCCGTT+AGG + chr4_1:80393780-80393799 Msa0576330:intron 45.0%
CACAAACAGACCACGTGATA+AGG - chr4_1:80393868-80393887 None:intergenic 45.0%
TGTGCAACTGTGCATATGCA+TGG + chr4_1:80394314-80394333 Msa0576330:intron 45.0%
GATATGGAGGGCAAAGAGTT+TGG - chr4_1:80394717-80394736 None:intergenic 45.0%
CACATGCATAGTGCAGTACT+GGG - chr4_1:80394820-80394839 None:intergenic 45.0%
AGTTACAGCAGTGACAGCAA+GGG - chr4_1:80394992-80395011 None:intergenic 45.0%
TTCTGTTAGGTCAGAGACAC+GGG + chr4_1:80395141-80395160 Msa0576330:intron 45.0%
!! TCTTGTGCAGGAGGTGTTAA+TGG + chr4_1:80395256-80395275 Msa0576330:intron 45.0%
!! CTTGTGCAGGAGGTGTTAAT+GGG + chr4_1:80395257-80395276 Msa0576330:intron 45.0%
ACTTGTGCGTGAGAAAATCC+AGG - chr4_1:80395344-80395363 None:intergenic 45.0%
GCACAAGTTCAATATTCCCC+AGG + chr4_1:80395356-80395375 Msa0576330:CDS 45.0%
AGCTAGTAACAGGAAGGACA+AGG - chr4_1:80395762-80395781 None:intergenic 45.0%
CAACCTTATTGGCATGGCTT+AGG - chr4_1:80395796-80395815 None:intergenic 45.0%
ATGGCACAACCTTATTGGCA+TGG - chr4_1:80395802-80395821 None:intergenic 45.0%
ACCACATGGCACAACCTTAT+TGG - chr4_1:80395807-80395826 None:intergenic 45.0%
!! GCAAGGCTTTTGAGTAATGC+AGG - chr4_1:80395845-80395864 None:intergenic 45.0%
ATTCTTGGGGATAACCCGTT+GGG + chr4_1:80396106-80396125 Msa0576330:CDS 45.0%
ACCATGTAGGACATTCCCAA+CGG - chr4_1:80396124-80396143 None:intergenic 45.0%
TTGGGAATGTCCTACATGGT+TGG + chr4_1:80396124-80396143 Msa0576330:CDS 45.0%
CTCTATGGTGTATCCTCTGT+GGG - chr4_1:80396165-80396184 None:intergenic 45.0%
AGGGAATTGAGCTTCCTCTA+TGG - chr4_1:80396180-80396199 None:intergenic 45.0%
TCCAGCTTTGCATCCAATGT+GGG - chr4_1:80396221-80396240 None:intergenic 45.0%
ATCCAGCTTTGCATCCAATG+TGG - chr4_1:80396222-80396241 None:intergenic 45.0%
! CCAACCAAGACATTTGGGTT+AGG - chr4_1:80396268-80396287 None:intergenic 45.0%
CCTAACCCAAATGTCTTGGT+TGG + chr4_1:80396265-80396284 Msa0576330:CDS 45.0%
CAGCTCCAACCAAGACATTT+GGG - chr4_1:80396273-80396292 None:intergenic 45.0%
ACAGCTCCAACCAAGACATT+TGG - chr4_1:80396274-80396293 None:intergenic 45.0%
AGGGAACGAATCTGTAGTGT+TGG - chr4_1:80396311-80396330 None:intergenic 45.0%
GATAGAAAGGCCTGGAATCA+GGG - chr4_1:80396330-80396349 None:intergenic 45.0%
TGATAGAAAGGCCTGGAATC+AGG - chr4_1:80396331-80396350 None:intergenic 45.0%
!! TATTAAAAAAAAATTAAATC+AGG + chr4_1:80394201-80394220 Msa0576330:intron 5.0%
TCGGAGCAAAAGGAGGAGTA+TGG - chr4_1:80391866-80391885 None:intergenic 50.0%
CGGCTATTGTTCGGAGCAAA+AGG - chr4_1:80391876-80391895 None:intergenic 50.0%
AGCATCGTGATAGTCGTGAC+CGG - chr4_1:80391899-80391918 None:intergenic 50.0%
CGTCGTGAATTCCAGAGTCA+CGG - chr4_1:80391996-80392015 None:intergenic 50.0%
!! CGTGACTCTGGAATTCACGA+CGG + chr4_1:80391994-80392013 Msa0576330:CDS 50.0%
TGAAATGAGGCTTACTCCGG+CGG - chr4_1:80392025-80392044 None:intergenic 50.0%
GCCGGCGACAACATAAAGTT+CGG + chr4_1:80392131-80392150 Msa0576330:CDS 50.0%
CCCGAACTTTATGTTGTCGC+CGG - chr4_1:80392135-80392154 None:intergenic 50.0%
CCGGCGACAACATAAAGTTC+GGG + chr4_1:80392132-80392151 Msa0576330:CDS 50.0%
! AGAGTAATGGGACCTGAGCT+AGG + chr4_1:80392209-80392228 Msa0576330:CDS 50.0%
TTCAACGCGTTACCTAGCTC+AGG - chr4_1:80392224-80392243 None:intergenic 50.0%
ACGCGTTGAAATCAGTGAGG+TGG + chr4_1:80392234-80392253 Msa0576330:CDS 50.0%
CGCGTTGAAATCAGTGAGGT+GGG + chr4_1:80392235-80392254 Msa0576330:CDS 50.0%
GCGTTGAAATCAGTGAGGTG+GGG + chr4_1:80392236-80392255 Msa0576330:CDS 50.0%
GAAATCAGTGAGGTGGGGAA+CGG + chr4_1:80392241-80392260 Msa0576330:CDS 50.0%
GTCAAATATAGGTTCCGGCG+TGG + chr4_1:80392283-80392302 Msa0576330:CDS 50.0%
GACTTGAACAAACACCACGC+CGG - chr4_1:80392300-80392319 None:intergenic 50.0%
GGCGTGGTGTTTGTTCAAGT+CGG + chr4_1:80392299-80392318 Msa0576330:CDS 50.0%
TTGGGAGAGACCGGAAGATA+TGG + chr4_1:80392346-80392365 Msa0576330:CDS 50.0%
TCTGAACACGATGGAAGCAG+CGG - chr4_1:80392450-80392469 None:intergenic 50.0%
! GCTTCTCAATCGTGCCGTTA+CGG + chr4_1:80392496-80392515 Msa0576330:CDS 50.0%
ATGAAAGCGACGCACCGTAA+CGG - chr4_1:80392513-80392532 None:intergenic 50.0%
GCCCATTCCAAGCACTTTAC+CGG + chr4_1:80392743-80392762 Msa0576330:intron 50.0%
! CCCGGTAAAGTGCTTGGAAT+GGG - chr4_1:80392747-80392766 None:intergenic 50.0%
CCCATTCCAAGCACTTTACC+GGG + chr4_1:80392744-80392763 Msa0576330:intron 50.0%
! TCCCGGTAAAGTGCTTGGAA+TGG - chr4_1:80392748-80392767 None:intergenic 50.0%
CACACACTCACCACCATCAA+CGG - chr4_1:80392895-80392914 None:intergenic 50.0%
!! GAGTTTGCTGACAGACATCG+TGG + chr4_1:80392926-80392945 Msa0576330:CDS 50.0%
CATACAGTAACAGCCTACGC+CGG + chr4_1:80392951-80392970 Msa0576330:CDS 50.0%
ATACAGTAACAGCCTACGCC+GGG + chr4_1:80392952-80392971 Msa0576330:CDS 50.0%
AGTAAAATGGGCACACTGCC+CGG - chr4_1:80392973-80392992 None:intergenic 50.0%
TCTGTATAGACGTCTACGCG+AGG - chr4_1:80393444-80393463 None:intergenic 50.0%
GTTGGGACAACAAGCATGCT+GGG + chr4_1:80393522-80393541 Msa0576330:CDS 50.0%
AAGAGTTTGGCCACCCAGTT+TGG - chr4_1:80394704-80394723 None:intergenic 50.0%
! TGCATAGTGCAGTACTGGGT+GGG - chr4_1:80394816-80394835 None:intergenic 50.0%
! ATGCATAGTGCAGTACTGGG+TGG - chr4_1:80394817-80394836 None:intergenic 50.0%
GCACATGCATAGTGCAGTAC+TGG - chr4_1:80394821-80394840 None:intergenic 50.0%
CAGTTACAGCAGTGACAGCA+AGG - chr4_1:80394993-80395012 None:intergenic 50.0%
ACCCATGTGTCCATGACCAA+AGG + chr4_1:80395485-80395504 Msa0576330:intron 50.0%
GCCTTTGGTCATGGACACAT+GGG - chr4_1:80395489-80395508 None:intergenic 50.0%
ATGGCTTAGGCCTTTGGTCA+TGG - chr4_1:80395498-80395517 None:intergenic 50.0%
GCCAATAAGGTTGTGCCATG+TGG + chr4_1:80395803-80395822 Msa0576330:CDS 50.0%
!! GCTTTTGAGTAATGCAGGGG+TGG - chr4_1:80395840-80395859 None:intergenic 50.0%
AATGAAGCTGACCTGGCGTT+TGG - chr4_1:80395867-80395886 None:intergenic 50.0%
CATTCTTGGGGATAACCCGT+TGG + chr4_1:80396105-80396124 Msa0576330:CDS 50.0%
CCATGTAGGACATTCCCAAC+GGG - chr4_1:80396123-80396142 None:intergenic 50.0%
ATGGTAAACGCTACCCACAG+AGG + chr4_1:80396149-80396168 Msa0576330:CDS 50.0%
CCTCTATGGTGTATCCTCTG+TGG - chr4_1:80396166-80396185 None:intergenic 50.0%
CCACAGAGGATACACCATAG+AGG + chr4_1:80396163-80396182 Msa0576330:CDS 50.0%
GTCTTGGTTGGAGCTGTAGT+TGG + chr4_1:80396277-80396296 Msa0576330:CDS 50.0%
TTGGTTGGAGCTGTAGTTGG+TGG + chr4_1:80396280-80396299 Msa0576330:CDS 50.0%
TGGTTGGAGCTGTAGTTGGT+GGG + chr4_1:80396281-80396300 Msa0576330:CDS 50.0%
CAGATTCGTTCCCTGATTCC+AGG + chr4_1:80396317-80396336 Msa0576330:CDS 50.0%
AGACTGCTGATAGAAAGGCC+TGG - chr4_1:80396338-80396357 None:intergenic 50.0%
GGCTCAGACTGCTGATAGAA+AGG - chr4_1:80396343-80396362 None:intergenic 50.0%
TATGGCGAGGACGCGAAATG+TGG - chr4_1:80391848-80391867 None:intergenic 55.0%
! GCAAAAGGAGGAGTATGGCG+AGG - chr4_1:80391861-80391880 None:intergenic 55.0%
TTGCTCCGAACAATAGCCGC+CGG + chr4_1:80391877-80391896 Msa0576330:CDS 55.0%
ATCGTGATAGTCGTGACCGG+CGG - chr4_1:80391896-80391915 None:intergenic 55.0%
AGTGGAGACGCTGATCAGAC+GGG - chr4_1:80391969-80391988 None:intergenic 55.0%
CAGTGGAGACGCTGATCAGA+CGG - chr4_1:80391970-80391989 None:intergenic 55.0%
! TTTCAGGTGGACTTGACCGG+AGG + chr4_1:80392098-80392117 Msa0576330:intron 55.0%
CCACAACTGTTGGGAGAGAC+CGG + chr4_1:80392337-80392356 Msa0576330:CDS 55.0%
AAGATCGATGGGTCCCATCC+AGG + chr4_1:80392389-80392408 Msa0576330:CDS 55.0%
! ATGGTGGTGAGTGTGTGTGC+AGG + chr4_1:80392898-80392917 Msa0576330:intron 55.0%
GGTTGGGACAACAAGCATGC+TGG + chr4_1:80393521-80393540 Msa0576330:CDS 55.0%
TGCATTCCCCGTTAGGCATG+TGG + chr4_1:80393787-80393806 Msa0576330:intron 55.0%
GCATTCCCCGTTAGGCATGT+GGG + chr4_1:80393788-80393807 Msa0576330:intron 55.0%
CAGCAGTGACAGCAAGGGAA+AGG - chr4_1:80394987-80395006 None:intergenic 55.0%
GGCCTTTGGTCATGGACACA+TGG - chr4_1:80395490-80395509 None:intergenic 55.0%
! GGTGGGCTTATCTTCAAGGC+TGG + chr4_1:80395710-80395729 Msa0576330:intron 55.0%
GGGCTTATCTTCAAGGCTGG+TGG + chr4_1:80395713-80395732 Msa0576330:CDS 55.0%
CAAAAGCCTTGCCAAACGCC+AGG + chr4_1:80395853-80395872 Msa0576330:CDS 55.0%
ACGGGGAAATGAAGCTGACC+TGG - chr4_1:80395874-80395893 None:intergenic 55.0%
CCCGTTGGGAATGTCCTACA+TGG + chr4_1:80396120-80396139 Msa0576330:CDS 55.0%
!! GCTGGATGGGCTGAAACTGA+GGG - chr4_1:80396199-80396218 None:intergenic 55.0%
!! GCATCCAATGTGGGCTGGAT+GGG - chr4_1:80396212-80396231 None:intergenic 55.0%
!! TGCATCCAATGTGGGCTGGA+TGG - chr4_1:80396213-80396232 None:intergenic 55.0%
GCTTTGCATCCAATGTGGGC+TGG - chr4_1:80396217-80396236 None:intergenic 55.0%
GCCCACATTGGATGCAAAGC+TGG + chr4_1:80396217-80396236 Msa0576330:CDS 55.0%
AAAGCGAGCAGACCCACAAG+TGG - chr4_1:80396385-80396404 None:intergenic 55.0%
CGTGACCGGCGGCTATTGTT+CGG - chr4_1:80391885-80391904 None:intergenic 60.0%
CGTCTGATCAGCGTCTCCAC+TGG + chr4_1:80391968-80391987 Msa0576330:CDS 60.0%
AATGAGGCTTACTCCGGCGG+TGG - chr4_1:80392022-80392041 None:intergenic 60.0%
ACCGGAGGTTACTACGACGC+CGG + chr4_1:80392113-80392132 Msa0576330:CDS 60.0%
CCGGTCTCTCCCAACAGTTG+TGG - chr4_1:80392340-80392359 None:intergenic 60.0%
TGCCACGTCGGATCCTGGAT+GGG - chr4_1:80392405-80392424 None:intergenic 60.0%
! AGTTGCTTTGGGCTGCAGCG+TGG + chr4_1:80393408-80393427 Msa0576330:CDS 60.0%
TGCGCACCCACATGCCTAAC+GGG - chr4_1:80393797-80393816 None:intergenic 60.0%
CTGCGCACCCACATGCCTAA+CGG - chr4_1:80393798-80393817 None:intergenic 60.0%
!! GTGGCAGTGGTGTCACCACA+TGG - chr4_1:80395821-80395840 None:intergenic 60.0%
GAGTAATGCAGGGGTGGCAG+TGG - chr4_1:80395834-80395853 None:intergenic 60.0%
AGCTGACCTGGCGTTTGGCA+AGG - chr4_1:80395862-80395881 None:intergenic 60.0%
!! GGCTGGATGGGCTGAAACTG+AGG - chr4_1:80396200-80396219 None:intergenic 60.0%
TCAGCCCATCCAGCCCACAT+TGG + chr4_1:80396205-80396224 Msa0576330:CDS 60.0%
TTCCAGAGTCACGGCGCCAG+TGG - chr4_1:80391987-80392006 None:intergenic 65.0%
!! ATTCACGACGGTGCCACCGC+CGG + chr4_1:80392006-80392025 Msa0576330:CDS 65.0%
GCCGGCGTCGTAGTAACCTC+CGG - chr4_1:80392117-80392136 None:intergenic 65.0%
GTCCCATCCAGGATCCGACG+TGG + chr4_1:80392400-80392419 Msa0576330:CDS 65.0%
CTGCCACGTCGGATCCTGGA+TGG - chr4_1:80392406-80392425 None:intergenic 65.0%
CATCCAGGATCCGACGTGGC+AGG + chr4_1:80392404-80392423 Msa0576330:CDS 65.0%
TCACCTGCCACGTCGGATCC+TGG - chr4_1:80392410-80392429 None:intergenic 65.0%
GGCGGTTTCACCTGCCACGT+CGG - chr4_1:80392417-80392436 None:intergenic 65.0%
GGAAGCAGCGGCAAGTGCAG+CGG - chr4_1:80392438-80392457 None:intergenic 65.0%
GGCTGCAGCGTGGTTGCACA+AGG + chr4_1:80393418-80393437 Msa0576330:CDS 65.0%
GCGCACCCACATGCCTAACG+GGG - chr4_1:80393796-80393815 None:intergenic 65.0%
CTCCACTGGCGCCGTGACTC+TGG + chr4_1:80391982-80392001 Msa0576330:CDS 70.0%
AGCAGCGGCAAGTGCAGCGG+CGG - chr4_1:80392435-80392454 None:intergenic 70.0%
ATGGGCACACTGCCCGGCGT+AGG - chr4_1:80392967-80392986 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 80391757 80396683 80391757 ID=Msa0576330;Name=Msa0576330
chr4_1 mRNA 80391757 80396683 80391757 ID=Msa0576330-mRNA-1;Parent=Msa0576330;Name=Msa0576330-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.85|1|1|1|7|260|514
chr4_1 exon 80391757 80392029 80391757 ID=Msa0576330-mRNA-1:exon:28733;Parent=Msa0576330-mRNA-1
chr4_1 exon 80392104 80392517 80392104 ID=Msa0576330-mRNA-1:exon:28734;Parent=Msa0576330-mRNA-1
chr4_1 exon 80392920 80393012 80392920 ID=Msa0576330-mRNA-1:exon:28735;Parent=Msa0576330-mRNA-1
chr4_1 exon 80393404 80393565 80393404 ID=Msa0576330-mRNA-1:exon:28736;Parent=Msa0576330-mRNA-1
chr4_1 exon 80395266 80395377 80395266 ID=Msa0576330-mRNA-1:exon:28737;Parent=Msa0576330-mRNA-1
chr4_1 exon 80395711 80395874 80395711 ID=Msa0576330-mRNA-1:exon:28738;Parent=Msa0576330-mRNA-1
chr4_1 exon 80396097 80396683 80396097 ID=Msa0576330-mRNA-1:exon:28739;Parent=Msa0576330-mRNA-1
chr4_1 CDS 80391757 80392029 80391757 ID=Msa0576330-mRNA-1:cds;Parent=Msa0576330-mRNA-1
chr4_1 CDS 80392104 80392517 80392104 ID=Msa0576330-mRNA-1:cds;Parent=Msa0576330-mRNA-1
chr4_1 CDS 80392920 80393012 80392920 ID=Msa0576330-mRNA-1:cds;Parent=Msa0576330-mRNA-1
chr4_1 CDS 80393404 80393565 80393404 ID=Msa0576330-mRNA-1:cds;Parent=Msa0576330-mRNA-1
chr4_1 CDS 80395266 80395377 80395266 ID=Msa0576330-mRNA-1:cds;Parent=Msa0576330-mRNA-1
chr4_1 CDS 80395711 80395874 80395711 ID=Msa0576330-mRNA-1:cds;Parent=Msa0576330-mRNA-1
chr4_1 CDS 80396097 80396423 80396097 ID=Msa0576330-mRNA-1:cds;Parent=Msa0576330-mRNA-1
chr4_1 three_prime_UTR 80396424 80396683 80396424 ID=Msa0576330-mRNA-1:three_prime_utr;Parent=Msa0576330-mRNA-1
Gene Sequence

>Msa0576330

CTCAAACACATTACTCTTCACCCACAGGGTTATAGTTGGAAGAAAGAAAAAAACAGAAAAATGGCGCGAAATGCTTTATCTTCTATTACCACATTTCGCGTCCTCGCCATACTCCTCCTTTTGCTCCGAACAATAGCCGCCGGTCACGACTATCACGATGCTCTCCGTAAGAGCATTCTTTTCTTTGAAGGACAACGCTCTGGCAAACTCCCGTCTGATCAGCGTCTCCACTGGCGCCGTGACTCTGGAATTCACGACGGTGCCACCGCCGGAGTGGACTTGACCGGAGGTTACTACGACGCCGGCGACAACATAAAGTTCGGGTTTCCGTTGGCGTTTACAACGACGATGTTAGCTTGGAGTGTGATTGATTTTGGAAGAGTAATGGGACCTGAGCTAGGTAACGCGTTGAAATCAGTGAGGTGGGGAACGGACTATCTTTTAAAGGCGACGTCAAATATAGGTTCCGGCGTGGTGTTTGTTCAAGTCGGTGATCCTTTATCGGACCACAACTGTTGGGAGAGACCGGAAGATATGGATACGTTACGCACAGTTTACAAGATCGATGGGTCCCATCCAGGATCCGACGTGGCAGGTGAAACCGCCGCTGCACTTGCCGCTGCTTCCATCGTGTTCAGATCACGTGATCCTGCTTACTCTAAATTGCTTCTCAATCGTGCCGTTACGGTGTTTGAGTTTGCTGACAGACATCGTGGTGCATACAGTAACAGCCTACGCCGGGCAGTGTGCCCATTTTACTGTGATGTAAACGGTTATCAGGATGAGTTGCTTTGGGCTGCAGCGTGGTTGCACAAGGCCTCGCGTAGACGTCTATACAGAGAATACATTATTCGTAACGAGGTTGTTTTGAGAGCTGGTGACACCATTAATGAGTTTGGTTGGGACAACAAGCATGCTGGGATTAATGTCCTCATTTCTAAGGAGGTGTTAATGGGAAGAGCAAATTATTTTTCTTCGTTCAAACGAAATGCAGATGAATTTATTTGTTCAACATTGCCTGGATTTTCTCACGCACAAGTTCAATATTCCCCAGGTGGGCTTATCTTCAAGGCTGGTGGAAGTAACATGCAACATGTAACGTCCTTGTCCTTCCTGTTACTAGCTTATTCCAATTACCTAAGCCATGCCAATAAGGTTGTGCCATGTGGTGACACCACTGCCACCCCTGCATTACTCAAAAGCCTTGCCAAACGCCAGGTTAACTACATTCTTGGGGATAACCCGTTGGGAATGTCCTACATGGTTGGTTATGGTAAACGCTACCCACAGAGGATACACCATAGAGGAAGCTCAATTCCCTCAGTTTCAGCCCATCCAGCCCACATTGGATGCAAAGCTGGATCTCAATATTTCTTCAGCCCAAACCCTAACCCAAATGTCTTGGTTGGAGCTGTAGTTGGTGGGCCTACCAACACTACAGATTCGTTCCCTGATTCCAGGCCTTTCTATCAGCAGTCTGAGCCCACGACATATATCAATGCACCACTTGTGGGTCTGCTCGCTTTCTTTTCAGCTCATCCTTGA
Protein sequence

>Msa0576330

LKHITLHPQGYSWKKEKNRKMARNALSSITTFRVLAILLLLLRTIAAGHDYHDALRKSILFFEGQRSGKLPSDQRLHWRRDSGIHDGATAGVDLTGGYYDAGDNIKFGFPLAFTTTMLAWSVIDFGRVMGPELGNALKSVRWGTDYLLKATSNIGSGVVFVQVGDPLSDHNCWERPEDMDTLRTVYKIDGSHPGSDVAGETAAALAAASIVFRSRDPAYSKLLLNRAVTVFEFADRHRGAYSNSLRRAVCPFYCDVNGYQDELLWAAAWLHKASRRRLYREYIIRNEVVLRAGDTINEFGWDNKHAGINVLISKEVLMGRANYFSSFKRNADEFICSTLPGFSHAQVQYSPGGLIFKAGGSNMQHVTSLSFLLLAYSNYLSHANKVVPCGDTTATPALLKSLAKRQVNYILGDNPLGMSYMVGYGKRYPQRIHHRGSSIPSVSAHPAHIGCKAGSQYFFSPNPNPNVLVGAVVGGPTNTTDSFPDSRPFYQQSEPTTYINAPLVGLLAFFSAHP*