AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0147210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0147210 MtrunA17_Chr5g0429221 60.333 421 150 6 1 408 1 417 1.50e-170 483
Msa0147210 MtrunA17_Chr7g0236841 52.278 417 180 7 1 401 8 421 8.34e-129 378
Msa0147210 MtrunA17_Chr6g0483491 52.970 404 173 6 1 391 8 407 4.75e-128 376
Msa0147210 MtrunA17_Chr1g0155691 87.333 150 19 0 234 383 1 150 1.49e-84 256
Msa0147210 MtrunA17_Chr1g0155201 52.234 291 123 6 113 401 10 286 6.47e-83 258
Msa0147210 MtrunA17_Chr2g0310581 31.148 427 263 8 3 411 53 466 2.48e-54 188
Msa0147210 MtrunA17_Chr3g0098121 27.384 409 265 8 3 385 152 554 1.74e-37 144
Msa0147210 MtrunA17_Chr2g0300291 27.642 369 249 7 32 385 179 544 1.60e-34 135
Msa0147210 MtrunA17_Chr1g0149251 27.937 315 214 7 32 339 2 310 1.38e-32 125
Msa0147210 MtrunA17_Chr4g0003441 28.571 315 212 7 32 339 146 454 7.42e-32 126
Msa0147210 MtrunA17_Chr2g0307471 26.904 394 243 12 2 366 90 467 1.88e-31 125
Msa0147210 MtrunA17_Chr7g0247191 27.628 333 228 8 32 358 188 513 3.17e-30 122
Msa0147210 MtrunA17_Chr4g0076491 26.667 375 234 8 1 339 285 654 9.37e-30 121
Msa0147210 MtrunA17_Chr7g0247221 26.140 329 233 6 32 357 181 502 3.48e-29 119
Msa0147210 MtrunA17_Chr7g0247181 26.426 333 232 7 32 358 178 503 3.64e-29 119
Msa0147210 MtrunA17_Chr3g0114081 27.746 346 217 8 41 359 63 402 2.89e-28 117
Msa0147210 MtrunA17_Chr4g0062301 28.363 342 216 9 2 328 109 436 3.22e-28 116
Msa0147210 MtrunA17_Chr8g0349951 43.590 156 73 4 1 146 8 158 1.96e-27 106
Msa0147210 MtrunA17_Chr6g0449741 26.330 376 232 10 1 339 247 614 3.14e-27 114
Msa0147210 MtrunA17_Chr7g0236831 23.973 438 253 10 32 390 202 638 1.17e-26 112
Msa0147210 MtrunA17_Chr3g0107851 28.882 322 209 9 32 337 155 472 2.05e-26 111
Msa0147210 MtrunA17_Chr7g0271121 26.629 353 233 12 32 368 144 486 2.41e-26 111
Msa0147210 MtrunA17_Chr4g0040761 26.437 348 236 10 32 369 57 394 7.26e-26 110
Msa0147210 MtrunA17_Chr3g0121351 28.213 319 200 10 32 327 183 495 1.57e-25 108
Msa0147210 MtrunA17_Chr8g0347161 24.847 326 200 6 32 327 140 450 3.36e-25 107
Msa0147210 MtrunA17_Chr2g0299681 27.964 329 219 9 32 352 79 397 1.06e-24 105
Msa0147210 MtrunA17_Chr4g0004301 25.472 424 234 14 3 355 42 454 1.78e-24 105
Msa0147210 MtrunA17_Chr8g0347171 26.074 326 196 6 32 327 198 508 2.21e-24 105
Msa0147210 MtrunA17_Chr5g0442191 25.656 343 224 10 32 357 119 447 3.22e-24 105
Msa0147210 MtrunA17_Chr1g0193491 25.291 344 239 8 32 363 152 489 5.06e-24 104
Msa0147210 MtrunA17_Chr2g0277821 25.197 381 276 6 32 405 542 920 5.21e-24 105
Msa0147210 MtrunA17_Chr2g0330401 28.616 318 202 8 23 327 126 431 5.96e-24 103
Msa0147210 MtrunA17_Chr6g0449911 24.781 343 236 9 23 353 195 527 8.43e-24 103
Msa0147210 MtrunA17_Chr3g0095031 26.738 374 245 12 7 358 94 460 8.56e-24 103
Msa0147210 MtrunA17_Chr5g0434301 25.236 424 235 14 3 355 42 454 1.04e-23 102
Msa0147210 MtrunA17_Chr8g0347151 25.153 326 199 6 32 327 239 549 1.81e-23 102
Msa0147210 MtrunA17_Chr5g0409981 26.730 419 239 16 1 367 102 504 2.08e-23 102
Msa0147210 MtrunA17_Chr1g0155211 54.217 83 28 1 1 73 1 83 2.68e-22 90.5
Msa0147210 MtrunA17_Chr1g0176041 26.935 323 198 10 32 327 192 503 1.02e-21 97.4
Msa0147210 MtrunA17_Chr7g0270131 25.000 308 209 6 32 327 270 567 1.09e-21 97.8
Msa0147210 MtrunA17_Chr8g0386451 27.119 354 225 10 31 359 325 670 1.20e-21 97.4
Msa0147210 MtrunA17_Chr1g0200181 23.181 371 246 10 1 342 143 503 1.32e-21 97.1
Msa0147210 MtrunA17_Chr4g0063551 26.975 367 228 12 41 375 187 545 3.91e-21 95.9
Msa0147210 MtrunA17_Chr1g0157691 22.911 371 247 11 1 342 145 505 7.31e-21 94.7
Msa0147210 MtrunA17_Chr4g0034411 26.685 356 232 13 32 371 114 456 2.23e-20 93.6
Msa0147210 MtrunA17_Chr5g0443991 25.779 353 235 12 32 368 114 455 1.87e-19 90.9
Msa0147210 MtrunA17_Chr2g0293631 25.000 340 239 8 23 353 526 858 2.51e-19 90.9
Msa0147210 MtrunA17_Chr6g0475251 26.554 354 224 13 32 363 141 480 3.84e-18 86.7
Msa0147210 MtrunA17_Chr1g0192021 24.283 453 261 14 2 385 25 464 3.75e-17 83.6
Msa0147210 MtrunA17_Chr2g0297261 21.774 372 252 11 3 351 34 389 1.21e-16 81.3
Msa0147210 MtrunA17_Chr4g0039471 31.343 201 116 5 3 189 223 415 2.88e-16 80.1
Msa0147210 MtrunA17_Chr7g0263771 26.159 302 203 9 32 325 171 460 3.72e-16 80.5
Msa0147210 MtrunA17_Chr4g0058591 26.316 285 180 9 32 300 240 510 2.05e-15 78.2
Msa0147210 MtrunA17_Chr6g0461751 21.767 317 232 8 41 346 187 498 2.23e-15 77.8
Msa0147210 MtrunA17_Chr4g0062321 27.313 227 151 5 83 305 17 233 5.53e-15 74.3
Msa0147210 MtrunA17_Chr6g0466611 25.714 315 196 14 41 328 189 492 6.18e-14 73.9
Msa0147210 MtrunA17_Chr3g0137901 28.472 144 101 1 198 339 3 146 7.75e-14 69.7
Msa0147210 MtrunA17_Chr1g0179761 22.876 306 195 11 41 322 130 418 6.91e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0147210 AT5G60990.1 47.294 425 193 10 1 400 8 426 8.99e-117 348
Msa0147210 AT1G16280.1 33.687 377 234 6 22 390 90 458 7.70e-57 194
Msa0147210 AT4G16630.1 27.749 382 257 7 3 368 168 546 5.79e-37 143
Msa0147210 AT5G65900.1 29.830 352 228 10 31 371 192 535 3.84e-35 137
Msa0147210 AT3G18600.1 29.373 303 204 4 32 328 128 426 1.41e-33 132
Msa0147210 AT3G61240.2 26.444 329 232 5 32 357 163 484 3.71e-31 124
Msa0147210 AT3G61240.1 26.444 329 232 5 32 357 163 484 3.71e-31 124
Msa0147210 AT5G11170.2 28.094 299 204 6 32 325 2 294 5.95e-31 121
Msa0147210 AT5G11170.1 28.094 299 204 6 32 325 85 377 1.90e-30 122
Msa0147210 AT5G11200.1 28.094 299 204 6 32 325 85 377 1.90e-30 122
Msa0147210 AT4G00660.1 25.532 329 235 5 32 357 170 491 3.65e-30 122
Msa0147210 AT4G00660.2 25.532 329 235 5 32 357 170 491 3.65e-30 122
Msa0147210 AT2G45810.1 26.444 329 232 6 32 357 193 514 6.31e-29 119
Msa0147210 AT5G05450.1 25.731 342 226 7 41 359 64 400 3.61e-27 114
Msa0147210 AT3G16840.2 24.312 436 253 8 32 390 231 666 4.32e-27 114
Msa0147210 AT2G33730.1 26.933 375 233 9 1 339 312 681 4.72e-27 114
Msa0147210 AT3G16840.1 24.312 436 253 8 32 390 230 665 4.78e-27 114
Msa0147210 AT4G15850.1 25.517 435 241 17 2 363 44 468 3.61e-26 110
Msa0147210 AT1G20920.2 25.857 321 230 5 32 345 230 549 1.05e-25 110
Msa0147210 AT3G22310.2 24.802 379 249 12 3 357 117 483 1.07e-25 109
Msa0147210 AT3G22310.1 24.802 379 249 12 3 357 117 483 1.12e-25 109
Msa0147210 AT1G20920.4 25.857 321 230 5 32 345 568 887 2.68e-25 109
Msa0147210 AT1G20920.6 25.857 321 230 5 32 345 568 887 2.68e-25 109
Msa0147210 AT1G20920.3 25.857 321 230 5 32 345 568 887 2.68e-25 109
Msa0147210 AT1G20920.7 25.857 321 230 5 32 345 568 887 2.68e-25 109
Msa0147210 AT1G20920.5 25.857 321 230 5 32 345 568 887 2.68e-25 109
Msa0147210 AT1G20920.1 25.857 321 230 5 32 345 568 887 2.68e-25 109
Msa0147210 AT1G71370.1 26.822 343 230 10 32 359 55 391 2.73e-25 108
Msa0147210 AT1G31970.1 25.806 372 230 13 1 340 115 472 4.58e-25 107
Msa0147210 AT5G26742.1 28.076 317 191 9 32 327 141 441 7.26e-25 107
Msa0147210 AT5G26742.2 28.076 317 191 9 32 327 141 441 7.27e-25 107
Msa0147210 AT5G26742.3 28.076 317 191 9 32 327 48 348 8.43e-25 107
Msa0147210 AT3G22330.1 23.421 380 253 12 3 357 105 471 9.73e-25 107
Msa0147210 AT3G58510.1 27.914 326 206 11 22 327 183 499 1.19e-24 106
Msa0147210 AT3G58510.3 27.914 326 206 11 22 327 183 499 1.19e-24 106
Msa0147210 AT3G58510.2 27.914 326 206 11 22 327 183 499 1.19e-24 106
Msa0147210 AT5G14610.7 24.198 343 238 9 23 353 61 393 7.41e-24 103
Msa0147210 AT5G14610.3 24.198 343 238 9 23 353 61 393 7.41e-24 103
Msa0147210 AT5G11200.3 24.118 340 206 6 32 325 85 418 1.53e-23 102
Msa0147210 AT1G63250.1 28.618 304 199 8 41 327 376 678 1.65e-23 103
Msa0147210 AT5G08620.1 24.847 326 200 6 32 327 119 429 1.65e-23 103
Msa0147210 AT5G63630.1 25.123 406 262 10 32 409 93 484 1.76e-23 102
Msa0147210 AT5G14610.5 24.198 343 238 9 23 353 200 532 1.89e-23 103
Msa0147210 AT2G07750.1 28.289 304 200 8 41 327 423 725 1.92e-23 103
Msa0147210 AT5G14610.6 24.198 343 238 9 23 353 192 524 2.04e-23 103
Msa0147210 AT5G14610.2 24.198 343 238 9 23 353 192 524 2.12e-23 103
Msa0147210 AT5G63630.2 26.708 322 199 7 32 327 287 597 2.46e-23 103
Msa0147210 AT5G63120.2 27.900 319 203 8 23 327 196 501 2.94e-23 102
Msa0147210 AT5G14610.1 24.198 343 238 9 23 353 260 592 3.00e-23 102
Msa0147210 AT1G55150.2 27.011 348 223 9 1 327 123 460 4.72e-23 101
Msa0147210 AT1G55150.1 26.857 350 221 9 1 327 98 435 6.12e-23 101
Msa0147210 AT5G08610.1 24.750 400 271 8 32 409 421 812 8.03e-23 101
Msa0147210 AT5G54910.1 28.242 347 214 12 32 359 110 440 1.17e-22 100
Msa0147210 AT1G28180.1 27.381 336 223 8 22 346 5 330 1.18e-22 99.0
Msa0147210 AT2G42520.2 28.479 309 193 11 41 327 207 509 1.97e-22 100
Msa0147210 AT2G42520.1 28.479 309 193 11 41 327 207 509 1.97e-22 100
Msa0147210 AT2G42520.3 28.479 309 193 11 41 327 207 509 1.97e-22 100
Msa0147210 AT3G09620.2 26.168 321 200 7 32 345 436 726 2.12e-22 100
Msa0147210 AT3G09620.1 26.168 321 200 7 32 345 435 725 2.16e-22 100
Msa0147210 AT5G51280.1 24.556 338 228 9 22 342 178 505 4.61e-22 99.0
Msa0147210 AT1G77030.1 26.000 350 235 11 32 369 67 404 6.67e-22 99.0
Msa0147210 AT3G01540.1 23.631 347 235 10 23 353 189 521 1.11e-21 97.8
Msa0147210 AT3G01540.4 23.631 347 235 10 23 353 189 521 1.22e-21 97.8
Msa0147210 AT3G01540.2 23.631 347 235 10 23 353 189 521 1.22e-21 97.8
Msa0147210 AT3G01540.3 23.631 347 235 10 23 353 189 521 1.22e-21 97.8
Msa0147210 AT3G58570.1 28.155 309 194 10 41 327 194 496 2.43e-21 97.1
Msa0147210 AT4G33370.1 24.138 377 235 12 1 342 96 456 1.24e-20 94.4
Msa0147210 AT3G06480.1 25.904 332 214 9 23 338 466 781 1.43e-20 95.1
Msa0147210 AT1G51380.1 22.222 378 259 9 1 357 21 384 1.46e-20 93.2
Msa0147210 AT3G19760.1 22.312 372 254 9 1 351 34 391 3.55e-20 92.4
Msa0147210 AT3G09720.2 25.667 300 207 7 32 325 180 469 9.45e-20 91.7
Msa0147210 AT3G09720.1 25.667 300 207 7 32 325 180 469 9.45e-20 91.7
Msa0147210 AT2G47330.1 23.496 349 234 7 1 327 227 564 5.05e-19 90.1
Msa0147210 AT5G62190.1 25.469 373 242 13 32 382 135 493 3.88e-17 84.0
Msa0147210 AT1G71280.1 26.224 286 169 9 32 305 56 311 4.12e-17 83.6
Msa0147210 AT1G71280.2 26.545 275 160 9 41 303 65 309 3.57e-16 79.7
Msa0147210 AT5G14610.4 24.116 311 214 9 23 323 200 498 6.31e-16 80.1
Msa0147210 AT5G63120.1 26.370 292 188 8 23 300 196 474 4.61e-15 77.4
Msa0147210 AT5G63120.3 26.370 292 188 8 23 300 196 474 4.79e-15 77.4
Msa0147210 AT5G63120.4 26.370 292 188 8 23 300 196 474 4.79e-15 77.4
Msa0147210 AT5G63120.5 26.370 292 188 8 23 300 196 474 4.79e-15 77.4
Msa0147210 AT3G02065.1 22.571 319 228 9 41 346 21 333 1.03e-13 72.4
Msa0147210 AT4G34910.1 25.000 416 244 13 2 354 46 456 1.04e-13 73.6
Msa0147210 AT3G02065.3 22.571 319 228 9 41 346 158 470 2.13e-13 72.0
Msa0147210 AT3G02065.2 22.571 319 228 9 41 346 158 470 2.13e-13 72.0
Msa0147210 AT3G06480.2 24.422 303 197 9 23 309 466 752 5.31e-13 71.2
Msa0147210 AT5G11200.2 29.688 128 90 0 198 325 309 436 6.56e-12 67.4

Find 107 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGCTAAGCATGTGTTTA+AGG 0.171798 1_4:+7113955 Msa0147210:CDS
TTCTTAAGAATCTTGGTTTC+AGG 0.181986 1_4:+7114341 Msa0147210:CDS
AATATGATTGAGAAACTTCT+AGG 0.227948 1_4:+7114784 Msa0147210:CDS
TGACTCATATAACTAATAAT+AGG 0.255686 1_4:-7114370 None:intergenic
GAGGCTCTAGGTTCTCAATT+TGG 0.257168 1_4:+7113059 Msa0147210:CDS
TCCTTGAATGCGTTCAAGTC+TGG 0.307276 1_4:+7114503 Msa0147210:CDS
ATGTGGTACAACGCTTCTTC+TGG 0.318429 1_4:+7114312 Msa0147210:CDS
GCTTTGATTCTTAAGAATCT+TGG 0.333972 1_4:+7114334 Msa0147210:CDS
TTGAAATGTCTCCTTTCATC+TGG 0.335756 1_4:-7114763 None:intergenic
AACAAAAGCCACAGCCTTAC+CGG 0.338183 1_4:-7112857 None:intergenic
AATGAAATCATTTACTGATC+TGG 0.339096 1_4:+7112639 None:intergenic
TGTGTCCGCAATAGAATATT+TGG 0.348473 1_4:-7114089 None:intergenic
GTGTAGGAAATGAAAGAATT+CGG 0.357638 1_4:+7115339 Msa0147210:intron
AACACATGCTTAGCATTGTA+TGG 0.367564 1_4:-7113950 None:intergenic
TTAGGTTGGGTCCGGTTTCG+AGG 0.373050 1_4:-7112900 None:intergenic
TCAGACCGCTGACCACTTTG+AGG 0.390680 1_4:+7113040 Msa0147210:CDS
TCGAGGAGGGTCTGCAATAT+AGG 0.392349 1_4:-7112883 None:intergenic
AAAGTATGCGCGCATACATC+AGG 0.397647 1_4:-7115433 None:intergenic
TTGTAGTGACTTTGTTAGTA+AGG 0.398889 1_4:+7114544 Msa0147210:CDS
TCTTGCTAGTTTAAAGTACT+TGG 0.402176 1_4:+7113435 Msa0147210:CDS
CCCAGACTTGAACGCATTCA+AGG 0.403087 1_4:-7114504 None:intergenic
GGAATTTCCCCACCACGTTC+CGG 0.403358 1_4:+7112838 Msa0147210:CDS
ATGAAATCATTTACTGATCT+GGG 0.404462 1_4:+7112640 Msa0147210:CDS
GCGCATACTTTGGTATTGAT+TGG 0.409449 1_4:+7115445 Msa0147210:three_prime_UTR
TCTGGGCTTATCTTCTGAAT+TGG 0.411456 1_4:+7112657 Msa0147210:CDS
GACTCATATAACTAATAATA+GGG 0.421629 1_4:-7114369 None:intergenic
TCTTAAGAATCTTGGTTTCA+GGG 0.434508 1_4:+7114342 Msa0147210:CDS
TGATGTATGCGCGCATACTT+TGG 0.439855 1_4:+7115435 Msa0147210:exon
CAATAGAATATTTGGAAGAT+AGG 0.440768 1_4:-7114081 None:intergenic
AGGTGATATAAGATTAGGTC+AGG 0.443590 1_4:-7113385 None:intergenic
TATTATTAGTTATATGAGTC+AGG 0.445349 1_4:+7114372 Msa0147210:CDS
AGATATTCCAGCAGTAGATA+TGG 0.445841 1_4:+7114571 Msa0147210:CDS
CAAGAGCAAGAGAAAATCCT+TGG 0.448775 1_4:-7113417 None:intergenic
AAAAGCAAAACTTCCTCAAA+TGG 0.452304 1_4:-7114931 None:intergenic
TTGCAGACCCTCCTCGAAAC+CGG 0.455169 1_4:+7112889 Msa0147210:CDS
GCAGGAAAAGATGATGTGTT+TGG 0.462155 1_4:+7112817 Msa0147210:intron
TGATTAACTACGACATTCCT+TGG 0.462912 1_4:+7114594 Msa0147210:CDS
CATTAAGGGTGTACCTTCAC+GGG 0.463015 1_4:-7113981 None:intergenic
CCTTGAATGCGTTCAAGTCT+GGG 0.463606 1_4:+7114504 Msa0147210:CDS
TTAACACTTACAATAATATG+AGG 0.470966 1_4:-7113278 None:intergenic
GTTGGGTCCGGTTTCGAGGA+GGG 0.479153 1_4:-7112896 None:intergenic
GAAAGGGGTTAGGTTGGGTC+CGG 0.486976 1_4:-7112908 None:intergenic
TTAATCACCATATCTACTGC+TGG 0.487418 1_4:-7114578 None:intergenic
ATTGTATACTGCACCATTTG+AGG 0.495188 1_4:+7114918 Msa0147210:CDS
ATCTGGGCTCACAAAGGAAA+CGG 0.497293 1_4:-7114746 None:intergenic
TAGAGCACACAAGCAAAGAA+AGG 0.502525 1_4:-7112925 None:intergenic
AGAGCACACAAGCAAAGAAA+GGG 0.505838 1_4:-7112924 None:intergenic
CCTTTGTGAGCCCAGATGAA+AGG 0.506008 1_4:+7114752 Msa0147210:CDS
ACATTAAGGGTGTACCTTCA+CGG 0.509367 1_4:-7113982 None:intergenic
ACCACGTTCCGGTAAGGCTG+TGG 0.513746 1_4:+7112849 Msa0147210:CDS
CAGCCTTACCGGAACGTGGT+GGG 0.516507 1_4:-7112846 None:intergenic
TTCCCCACCACGTTCCGGTA+AGG 0.517204 1_4:+7112843 Msa0147210:CDS
AGCAAAGAAAGGGGTTAGGT+TGG 0.518164 1_4:-7112914 None:intergenic
GCAAAGAAAGGGGTTAGGTT+GGG 0.520003 1_4:-7112913 None:intergenic
TGTAGTGACTTTGTTAGTAA+GGG 0.522265 1_4:+7114545 Msa0147210:CDS
CTTGTGTGCTCTATTCCACA+AGG 0.529112 1_4:+7112935 Msa0147210:CDS
AGAAATGTTCTCCGCTCACT+AGG 0.532344 1_4:-7113619 None:intergenic
AGGATACTTAGAAGAGGAGG+AGG 0.544024 1_4:+7115374 Msa0147210:CDS
AGCCTTACCGGAACGTGGTG+GGG 0.546337 1_4:-7112845 None:intergenic
GAATGTTCTCATAAGATAGC+AGG 0.549053 1_4:-7113564 None:intergenic
ATTATATCTACCGCGTGGGA+TGG 0.549999 1_4:+7114701 Msa0147210:CDS
TGAAATGTCTCCTTTCATCT+GGG 0.550468 1_4:-7114762 None:intergenic
TCTTACTCTTCAAGGTTGGG+AGG 0.551040 1_4:+7113362 Msa0147210:intron
AGGAAATGAAAGAATTCGGT+TGG 0.559186 1_4:+7115343 Msa0147210:intron
CACAAGCAAAGAAAGGGGTT+AGG 0.561458 1_4:-7112918 None:intergenic
AAATGAAAGAATTCGGTTGG+AGG 0.566198 1_4:+7115346 Msa0147210:CDS
GGTTGGGTCCGGTTTCGAGG+AGG 0.566226 1_4:-7112897 None:intergenic
TTTCAGCGAGAGTGTGTACA+AGG 0.576308 1_4:-7114255 None:intergenic
GCTGACCACTTTGAGGCTCT+AGG 0.576835 1_4:+7113047 Msa0147210:CDS
AAAGAATTCGGTTGGAGGAG+CGG 0.578400 1_4:+7115351 Msa0147210:CDS
ATCTTCCAAATATTCTATTG+CGG 0.580285 1_4:+7114084 Msa0147210:CDS
AAGAGCAAGAGAAAATCCTT+GGG 0.587885 1_4:-7113416 None:intergenic
GGATGGATTCATGTTCCTTG+CGG 0.596960 1_4:-7113241 None:intergenic
TACCACACAGGAGCGAAGCT+AGG 0.597490 1_4:+7115397 Msa0147210:CDS
AAAGTGGTCAGCGGTCTGAA+AGG 0.598234 1_4:-7113036 None:intergenic
CTTTATGCAAGAAAATCACA+AGG 0.598482 1_4:+7114126 Msa0147210:CDS
CGGAGGATACTTAGAAGAGG+AGG 0.598572 1_4:+7115371 Msa0147210:CDS
GGCTGAAAGATTAGCACAAG+AGG 0.602507 1_4:+7114972 Msa0147210:CDS
CATATAACTAATAATAGGGA+TGG 0.602559 1_4:-7114365 None:intergenic
CAAGAATGATTCCTAGTGAG+CGG 0.607443 1_4:+7113608 Msa0147210:CDS
AGGTTGCTCTGAGTTGAGGA+TGG 0.613304 1_4:-7113258 None:intergenic
CATCTTACGTTTGGATACCA+AGG 0.615406 1_4:-7114611 None:intergenic
TTTGGAAGGGCGTGTTAGTG+AGG 0.618670 1_4:+7114951 Msa0147210:CDS
CACACTCTCGCTGAAATGAG+TGG 0.626657 1_4:+7114262 Msa0147210:CDS
TTCATCTACATTCACAGACG+AGG 0.628178 1_4:+7113645 Msa0147210:CDS
AAGTATGCGCGCATACATCA+GGG 0.633481 1_4:-7115432 None:intergenic
GTGTTTAAGGAATCCCGTGA+AGG 0.633554 1_4:+7113968 Msa0147210:CDS
TATGAGGTTGCTCTGAGTTG+AGG 0.634527 1_4:-7113262 None:intergenic
CCTTTCATCTGGGCTCACAA+AGG 0.638109 1_4:-7114752 None:intergenic
TCAAATGGTGCAGTATACAA+TGG 0.641695 1_4:-7114916 None:intergenic
ACAGCCTTACCGGAACGTGG+TGG 0.641832 1_4:-7112847 None:intergenic
CTTGAATGCGTTCAAGTCTG+GGG 0.643789 1_4:+7114505 Msa0147210:CDS
GAATTCGGTTGGAGGAGCGG+AGG 0.647473 1_4:+7115354 Msa0147210:CDS
CTTCTCTGCGCAAAATACCA+AGG 0.647993 1_4:-7112703 None:intergenic
GAGCGGAGGATACTTAGAAG+AGG 0.648998 1_4:+7115368 Msa0147210:CDS
CAGGATTATATCTACCGCGT+GGG 0.649705 1_4:+7114697 Msa0147210:intron
TAGAGCCTCAAAGTGGTCAG+CGG 0.665980 1_4:-7113045 None:intergenic
AACCTAGCTTCGCTCCTGTG+TGG 0.670444 1_4:-7115399 None:intergenic
AAGAGGAGGAGGTACCACAC+AGG 0.671939 1_4:+7115385 Msa0147210:CDS
GCCACAGCCTTACCGGAACG+TGG 0.674809 1_4:-7112850 None:intergenic
GAGAACCTAGAGCCTCAAAG+TGG 0.679438 1_4:-7113052 None:intergenic
TATCACCTAAAACACACCCA+AGG 0.682398 1_4:+7113400 Msa0147210:CDS
ATGGTATACACTCAGCGATG+TGG 0.685891 1_4:+7114295 Msa0147210:CDS
GAGCACACAAGCAAAGAAAG+GGG 0.686944 1_4:-7112923 None:intergenic
GATTGCTGAAGAGAACCGCA+AGG 0.696368 1_4:+7113226 Msa0147210:intron
ACAGGATTATATCTACCGCG+TGG 0.696590 1_4:+7114696 Msa0147210:intron
GAGCAACAGTCCATCCCACG+CGG 0.775337 1_4:-7114711 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGTAATAATGTAAAAA+CGG - chr1_4:7113483-7113502 None:intergenic 10.0%
!! ATAATATTTGTAAACATTAA+GGG - chr1_4:7113998-7114017 None:intergenic 10.0%
!!! TTAACATAATAACTTTTTAT+AGG + chr1_4:7114466-7114485 Msa0147210:intron 10.0%
!!! ATATAGAAAAGTTAATTTTT+TGG + chr1_4:7115050-7115069 Msa0147210:intron 10.0%
!!! ATCATAAATATAAAAAGTTT+TGG - chr1_4:7115627-7115646 None:intergenic 10.0%
!! TAGTTTAAGAAAAAAGAAAA+AGG - chr1_4:7113007-7113026 None:intergenic 15.0%
!!! TTTTTCTTTTTTCTTAAACT+AGG + chr1_4:7113006-7113025 Msa0147210:intron 15.0%
!!! ATGTTTGAAATTTCATTTAT+AGG - chr1_4:7113772-7113791 None:intergenic 15.0%
!! GATAATATTTGTAAACATTA+AGG - chr1_4:7113999-7114018 None:intergenic 15.0%
!! AAGTTATTATGTTAAGAATT+AGG - chr1_4:7114461-7114480 None:intergenic 15.0%
!!! ATTTTTTTTTTCTTTCTTTC+AGG + chr1_4:7114883-7114902 Msa0147210:intron 15.0%
!!! TGTTTATATTTTATTTGTGT+AGG + chr1_4:7115323-7115342 Msa0147210:intron 15.0%
!!! TTGTCAGTTATTTTATTATT+TGG + chr1_4:7115517-7115536 Msa0147210:three_prime_UTR 15.0%
!!! AAAATCTAAAACACATATTA+TGG + chr1_4:7115559-7115578 Msa0147210:intron 15.0%
!!! AAATCTAAAACACATATTAT+GGG + chr1_4:7115560-7115579 Msa0147210:intron 15.0%
!! CAAAAATTTGTGAAACAAAA+AGG + chr1_4:7112680-7112699 Msa0147210:CDS 20.0%
!! ATTGAATTATGCAATTTCAT+CGG - chr1_4:7113121-7113140 None:intergenic 20.0%
!! TATAGAAAAAGCAATCAAAA+TGG - chr1_4:7113206-7113225 None:intergenic 20.0%
!! TTAACACTTACAATAATATG+AGG - chr1_4:7113281-7113300 None:intergenic 20.0%
!!! TATTTATTTCTTACTCTTCA+AGG + chr1_4:7113354-7113373 Msa0147210:intron 20.0%
!! AAACATTCCTATAAATGAAA+AGG + chr1_4:7113762-7113781 Msa0147210:intron 20.0%
!! AACATTCCTATAAATGAAAA+GGG + chr1_4:7113787-7113806 Msa0147210:intron 20.0%
!! ATCTACACTTGTATTAATAT+AGG + chr1_4:7113894-7113913 Msa0147210:intron 20.0%
!! TCTACACTTGTATTAATATA+GGG + chr1_4:7113895-7113914 Msa0147210:intron 20.0%
!!! TTAAGAAATTCAACATTTTC+TGG - chr1_4:7114169-7114188 None:intergenic 20.0%
!! AATGAGTGGAAAAAAATATA+TGG + chr1_4:7114276-7114295 Msa0147210:CDS 20.0%
!! GACTCATATAACTAATAATA+GGG - chr1_4:7114372-7114391 None:intergenic 20.0%
!! TGACTCATATAACTAATAAT+AGG - chr1_4:7114373-7114392 None:intergenic 20.0%
!! TATTATTAGTTATATGAGTC+AGG + chr1_4:7114372-7114391 Msa0147210:CDS 20.0%
!! AGAAATTACAATTATAACAC+AGG - chr1_4:7114414-7114433 None:intergenic 20.0%
!!! ATTAACTTTTCTATATAGAC+AGG - chr1_4:7115046-7115065 None:intergenic 20.0%
!!! AGTTAATTTTTTGGATTTTG+TGG + chr1_4:7115059-7115078 Msa0147210:intron 20.0%
!!! TCAGTTATTTTATTATTTGG+AGG + chr1_4:7115520-7115539 Msa0147210:three_prime_UTR 20.0%
! ATGAAATCATTTACTGATCT+GGG + chr1_4:7112640-7112659 Msa0147210:CDS 25.0%
! TAAATGATTATGATACCTTG+TGG - chr1_4:7112953-7112972 None:intergenic 25.0%
!!! GTTTTAGGTGATATAAGATT+AGG - chr1_4:7113393-7113412 None:intergenic 25.0%
! TGAAATGTAAAACTCAAAAG+TGG - chr1_4:7113743-7113762 None:intergenic 25.0%
! CAATAGAATATTTGGAAGAT+AGG - chr1_4:7114084-7114103 None:intergenic 25.0%
! ATCTTCCAAATATTCTATTG+CGG + chr1_4:7114084-7114103 Msa0147210:CDS 25.0%
! CATATAACTAATAATAGGGA+TGG - chr1_4:7114368-7114387 None:intergenic 25.0%
!! TTTTTATAGGCAAAGAAACT+TGG + chr1_4:7114479-7114498 Msa0147210:intron 25.0%
! AATATGATTGAGAAACTTCT+AGG + chr1_4:7114784-7114803 Msa0147210:CDS 25.0%
!!! TCTTTAAAATGGCAAAGTAA+AGG - chr1_4:7114830-7114849 None:intergenic 25.0%
!! AAAGCGTCATAGTAAATAAT+TGG + chr1_4:7114853-7114872 Msa0147210:intron 25.0%
!! ATTGAGCATAGTTATGTTTT+AGG + chr1_4:7115006-7115025 Msa0147210:intron 25.0%
!! TCTTATTATAAAAGCTTGCT+AGG - chr1_4:7115178-7115197 None:intergenic 25.0%
!! TATGATGAGTGATTTGAAAT+TGG + chr1_4:7115251-7115270 Msa0147210:intron 25.0%
!!! CAACATTTTGACTTTTAAAG+TGG + chr1_4:7115489-7115508 Msa0147210:three_prime_UTR 25.0%
! TAAAACACATATTATGGGTA+TGG + chr1_4:7115565-7115584 Msa0147210:intron 25.0%
TATTTCTTACTCTTCAAGGT+TGG + chr1_4:7113358-7113377 Msa0147210:intron 30.0%
ATTTCTTACTCTTCAAGGTT+GGG + chr1_4:7113359-7113378 Msa0147210:intron 30.0%
! TCTTGCTAGTTTAAAGTACT+TGG + chr1_4:7113435-7113454 Msa0147210:CDS 30.0%
CTTTGATCAAATAAACTGCT+AGG + chr1_4:7113674-7113693 Msa0147210:intron 30.0%
CTTTATGCAAGAAAATCACA+AGG + chr1_4:7114126-7114145 Msa0147210:CDS 30.0%
! ATTCAACATTTTCTGGACAA+GGG - chr1_4:7114162-7114181 None:intergenic 30.0%
! AATTCAACATTTTCTGGACA+AGG - chr1_4:7114163-7114182 None:intergenic 30.0%
GCTTTGATTCTTAAGAATCT+TGG + chr1_4:7114334-7114353 Msa0147210:CDS 30.0%
TTCTTAAGAATCTTGGTTTC+AGG + chr1_4:7114341-7114360 Msa0147210:CDS 30.0%
TCTTAAGAATCTTGGTTTCA+GGG + chr1_4:7114342-7114361 Msa0147210:CDS 30.0%
GAATTAGGCATATTTCTTGT+TGG - chr1_4:7114446-7114465 None:intergenic 30.0%
TTGTAGTGACTTTGTTAGTA+AGG + chr1_4:7114544-7114563 Msa0147210:CDS 30.0%
TGTAGTGACTTTGTTAGTAA+GGG + chr1_4:7114545-7114564 Msa0147210:CDS 30.0%
TATATAGCACATCTTACGTT+TGG - chr1_4:7114623-7114642 None:intergenic 30.0%
ATATAATCCTGTTGATCACA+CGG - chr1_4:7114688-7114707 None:intergenic 30.0%
!! GACGCTTTTGTTCTTTAAAA+TGG - chr1_4:7114841-7114860 None:intergenic 30.0%
AAAAGCAAAACTTCCTCAAA+TGG - chr1_4:7114934-7114953 None:intergenic 30.0%
! ATTTGAGGAAGTTTTGCTTT+TGG + chr1_4:7114933-7114952 Msa0147210:CDS 30.0%
GCTATCAATGAAGACAAATT+GGG - chr1_4:7115102-7115121 None:intergenic 30.0%
TGCTATCAATGAAGACAAAT+TGG - chr1_4:7115103-7115122 None:intergenic 30.0%
! TTTGTCTTCATTGATAGCAA+AGG + chr1_4:7115104-7115123 Msa0147210:intron 30.0%
GTGTAGGAAATGAAAGAATT+CGG + chr1_4:7115339-7115358 Msa0147210:intron 30.0%
TTTGTGAAACAAAAAGGCCT+TGG + chr1_4:7112686-7112705 Msa0147210:CDS 35.0%
TTTCATTTCATTCTGCATGC+AGG + chr1_4:7112799-7112818 Msa0147210:intron 35.0%
AGGTGATATAAGATTAGGTC+AGG - chr1_4:7113388-7113407 None:intergenic 35.0%
! AAAATCCTTGGGTGTGTTTT+AGG - chr1_4:7113408-7113427 None:intergenic 35.0%
AAGAGCAAGAGAAAATCCTT+GGG - chr1_4:7113419-7113438 None:intergenic 35.0%
GAATGTTCTCATAAGATAGC+AGG - chr1_4:7113567-7113586 None:intergenic 35.0%
ATAAACTGCTAGGAACTTCT+TGG + chr1_4:7113684-7113703 Msa0147210:intron 35.0%
TAAACTGCTAGGAACTTCTT+GGG + chr1_4:7113685-7113704 Msa0147210:intron 35.0%
CCTATAAATGAAAAGGGACT+CGG + chr1_4:7113793-7113812 Msa0147210:intron 35.0%
TGAAATCACAAGAGTGGAAA+TGG - chr1_4:7113927-7113946 None:intergenic 35.0%
ATTTCCACTCTTGTGATTTC+AGG + chr1_4:7113926-7113945 Msa0147210:intron 35.0%
AACACATGCTTAGCATTGTA+TGG - chr1_4:7113953-7113972 None:intergenic 35.0%
CAATGCTAAGCATGTGTTTA+AGG + chr1_4:7113955-7113974 Msa0147210:CDS 35.0%
TGTGTCCGCAATAGAATATT+TGG - chr1_4:7114092-7114111 None:intergenic 35.0%
AGATATTCCAGCAGTAGATA+TGG + chr1_4:7114571-7114590 Msa0147210:CDS 35.0%
TTAATCACCATATCTACTGC+TGG - chr1_4:7114581-7114600 None:intergenic 35.0%
TGATTAACTACGACATTCCT+TGG + chr1_4:7114594-7114613 Msa0147210:CDS 35.0%
TGAAATGTCTCCTTTCATCT+GGG - chr1_4:7114765-7114784 None:intergenic 35.0%
TTGAAATGTCTCCTTTCATC+TGG - chr1_4:7114766-7114785 None:intergenic 35.0%
GATTGAGAAACTTCTAGGTT+AGG + chr1_4:7114789-7114808 Msa0147210:intron 35.0%
TCAAATGGTGCAGTATACAA+TGG - chr1_4:7114919-7114938 None:intergenic 35.0%
ATTGTATACTGCACCATTTG+AGG + chr1_4:7114918-7114937 Msa0147210:CDS 35.0%
!! AGGAAGTTTTGCTTTTGGAA+GGG + chr1_4:7114938-7114957 Msa0147210:CDS 35.0%
! TCTTCATTGATAGCAAAGGA+GGG + chr1_4:7115108-7115127 Msa0147210:intron 35.0%
AGGAAATGAAAGAATTCGGT+TGG + chr1_4:7115343-7115362 Msa0147210:intron 35.0%
AAATGAAAGAATTCGGTTGG+AGG + chr1_4:7115346-7115365 Msa0147210:CDS 35.0%
TCTGGGCTTATCTTCTGAAT+TGG + chr1_4:7112657-7112676 Msa0147210:CDS 40.0%
TCAGATACCTTGTAGTGCAT+GGG - chr1_4:7112735-7112754 None:intergenic 40.0%
ATCAGATACCTTGTAGTGCA+TGG - chr1_4:7112736-7112755 None:intergenic 40.0%
GCAGGAAAAGATGATGTGTT+TGG + chr1_4:7112817-7112836 Msa0147210:intron 40.0%
AGAGCACACAAGCAAAGAAA+GGG - chr1_4:7112927-7112946 None:intergenic 40.0%
TAGAGCACACAAGCAAAGAA+AGG - chr1_4:7112928-7112947 None:intergenic 40.0%
GTAACCAACCAGCACATATA+TGG - chr1_4:7113174-7113193 None:intergenic 40.0%
TATCACCTAAAACACACCCA+AGG + chr1_4:7113400-7113419 Msa0147210:CDS 40.0%
CAAGAGCAAGAGAAAATCCT+TGG - chr1_4:7113420-7113439 None:intergenic 40.0%
CAAGAATGATTCCTAGTGAG+CGG + chr1_4:7113608-7113627 Msa0147210:CDS 40.0%
TTCATCTACATTCACAGACG+AGG + chr1_4:7113645-7113664 Msa0147210:CDS 40.0%
! CCGAGTCCCTTTTCATTTAT+AGG - chr1_4:7113796-7113815 None:intergenic 40.0%
! TGATCTCGGATTTTACTGCA+GGG - chr1_4:7113822-7113841 None:intergenic 40.0%
CAGTAAAATCCGAGATCAGA+CGG + chr1_4:7113824-7113843 Msa0147210:intron 40.0%
TATGTAGAACCGTCTGATCT+CGG - chr1_4:7113836-7113855 None:intergenic 40.0%
! ACATTAAGGGTGTACCTTCA+CGG - chr1_4:7113985-7114004 None:intergenic 40.0%
CAATTCCATGCTTCTTGCAT+AGG + chr1_4:7114225-7114244 Msa0147210:intron 40.0%
CATCTTACGTTTGGATACCA+AGG - chr1_4:7114614-7114633 None:intergenic 40.0%
!! GAGGAAGTTTTGCTTTTGGA+AGG + chr1_4:7114937-7114956 Msa0147210:CDS 40.0%
! GTCTTCATTGATAGCAAAGG+AGG + chr1_4:7115107-7115126 Msa0147210:intron 40.0%
!! GCGCATACTTTGGTATTGAT+TGG + chr1_4:7115445-7115464 Msa0147210:three_prime_UTR 40.0%
CTTCTCTGCGCAAAATACCA+AGG - chr1_4:7112706-7112725 None:intergenic 45.0%
CAGATACCTTGTAGTGCATG+GGG - chr1_4:7112734-7112753 None:intergenic 45.0%
AACAAAAGCCACAGCCTTAC+CGG - chr1_4:7112860-7112879 None:intergenic 45.0%
GCAAAGAAAGGGGTTAGGTT+GGG - chr1_4:7112916-7112935 None:intergenic 45.0%
AGCAAAGAAAGGGGTTAGGT+TGG - chr1_4:7112917-7112936 None:intergenic 45.0%
CACAAGCAAAGAAAGGGGTT+AGG - chr1_4:7112921-7112940 None:intergenic 45.0%
GAGCACACAAGCAAAGAAAG+GGG - chr1_4:7112926-7112945 None:intergenic 45.0%
CTTGTGTGCTCTATTCCACA+AGG + chr1_4:7112935-7112954 Msa0147210:CDS 45.0%
!! GAGGCTCTAGGTTCTCAATT+TGG + chr1_4:7113059-7113078 Msa0147210:CDS 45.0%
GCAAGAGACCATATATGTGC+TGG + chr1_4:7113163-7113182 Msa0147210:intron 45.0%
! GAGACCATATATGTGCTGGT+TGG + chr1_4:7113167-7113186 Msa0147210:intron 45.0%
! GGATGGATTCATGTTCCTTG+CGG - chr1_4:7113244-7113263 None:intergenic 45.0%
! TATGAGGTTGCTCTGAGTTG+AGG - chr1_4:7113265-7113284 None:intergenic 45.0%
TCTTACTCTTCAAGGTTGGG+AGG + chr1_4:7113362-7113381 Msa0147210:intron 45.0%
AGAAATGTTCTCCGCTCACT+AGG - chr1_4:7113622-7113641 None:intergenic 45.0%
! CTGATCTCGGATTTTACTGC+AGG - chr1_4:7113823-7113842 None:intergenic 45.0%
TGGACCTGAAATCACAAGAG+TGG - chr1_4:7113933-7113952 None:intergenic 45.0%
GTGTTTAAGGAATCCCGTGA+AGG + chr1_4:7113968-7113987 Msa0147210:CDS 45.0%
! CATTAAGGGTGTACCTTCAC+GGG - chr1_4:7113984-7114003 None:intergenic 45.0%
GCAATCCTATGCAAGAAGCA+TGG - chr1_4:7114233-7114252 None:intergenic 45.0%
! TTTCAGCGAGAGTGTGTACA+AGG - chr1_4:7114258-7114277 None:intergenic 45.0%
ATGGTATACACTCAGCGATG+TGG + chr1_4:7114295-7114314 Msa0147210:CDS 45.0%
ATGTGGTACAACGCTTCTTC+TGG + chr1_4:7114312-7114331 Msa0147210:CDS 45.0%
GAGTCAGGTAACTGTAGTAC+AGG + chr1_4:7114387-7114406 Msa0147210:intron 45.0%
TCCTTGAATGCGTTCAAGTC+TGG + chr1_4:7114503-7114522 Msa0147210:CDS 45.0%
CCTTGAATGCGTTCAAGTCT+GGG + chr1_4:7114504-7114523 Msa0147210:CDS 45.0%
CTTGAATGCGTTCAAGTCTG+GGG + chr1_4:7114505-7114524 Msa0147210:CDS 45.0%
ACAGGATTATATCTACCGCG+TGG + chr1_4:7114696-7114715 Msa0147210:intron 45.0%
CAGGATTATATCTACCGCGT+GGG + chr1_4:7114697-7114716 Msa0147210:intron 45.0%
ATTATATCTACCGCGTGGGA+TGG + chr1_4:7114701-7114720 Msa0147210:CDS 45.0%
ATCTGGGCTCACAAAGGAAA+CGG - chr1_4:7114749-7114768 None:intergenic 45.0%
GGCTGAAAGATTAGCACAAG+AGG + chr1_4:7114972-7114991 Msa0147210:CDS 45.0%
TAGCAAAGGAGGGAAAAGCT+TGG + chr1_4:7115118-7115137 Msa0147210:intron 45.0%
AGCAAAGGAGGGAAAAGCTT+GGG + chr1_4:7115119-7115138 Msa0147210:intron 45.0%
CTTGGGGTGAATGGTGATTA+GGG + chr1_4:7115136-7115155 Msa0147210:intron 45.0%
AAAGAATTCGGTTGGAGGAG+CGG + chr1_4:7115351-7115370 Msa0147210:CDS 45.0%
AGGATACTTAGAAGAGGAGG+AGG + chr1_4:7115374-7115393 Msa0147210:CDS 45.0%
AAGTATGCGCGCATACATCA+GGG - chr1_4:7115435-7115454 None:intergenic 45.0%
AAAGTATGCGCGCATACATC+AGG - chr1_4:7115436-7115455 None:intergenic 45.0%
TGATGTATGCGCGCATACTT+TGG + chr1_4:7115435-7115454 Msa0147210:exon 45.0%
AATTGTAGTAGCAGCCCTGT+AGG - chr1_4:7115598-7115617 None:intergenic 45.0%
GTGATTCCCCATGCACTACA+AGG + chr1_4:7112725-7112744 Msa0147210:intron 50.0%
TCGAGGAGGGTCTGCAATAT+AGG - chr1_4:7112886-7112905 None:intergenic 50.0%
AAAGTGGTCAGCGGTCTGAA+AGG - chr1_4:7113039-7113058 None:intergenic 50.0%
TAGAGCCTCAAAGTGGTCAG+CGG - chr1_4:7113048-7113067 None:intergenic 50.0%
GAGAACCTAGAGCCTCAAAG+TGG - chr1_4:7113055-7113074 None:intergenic 50.0%
GATTGCTGAAGAGAACCGCA+AGG + chr1_4:7113226-7113245 Msa0147210:intron 50.0%
! AGGTTGCTCTGAGTTGAGGA+TGG - chr1_4:7113261-7113280 None:intergenic 50.0%
! GACTGCTCTGCATTTTGAGC+AGG + chr1_4:7113525-7113544 Msa0147210:intron 50.0%
CACACTCTCGCTGAAATGAG+TGG + chr1_4:7114262-7114281 Msa0147210:CDS 50.0%
CCCAGACTTGAACGCATTCA+AGG - chr1_4:7114507-7114526 None:intergenic 50.0%
TTCCTGACCGTGTGATCAAC+AGG + chr1_4:7114678-7114697 Msa0147210:intron 50.0%
ATCCTGTTGATCACACGGTC+AGG - chr1_4:7114683-7114702 None:intergenic 50.0%
CCTTTCATCTGGGCTCACAA+AGG - chr1_4:7114755-7114774 None:intergenic 50.0%
CCTTTGTGAGCCCAGATGAA+AGG + chr1_4:7114752-7114771 Msa0147210:CDS 50.0%
! TTTGGAAGGGCGTGTTAGTG+AGG + chr1_4:7114951-7114970 Msa0147210:CDS 50.0%
GCAAAGGAGGGAAAAGCTTG+GGG + chr1_4:7115120-7115139 Msa0147210:intron 50.0%
AGGGAAAAGCTTGGGGTGAA+TGG + chr1_4:7115127-7115146 Msa0147210:intron 50.0%
GCTTGGGGTGAATGGTGATT+AGG + chr1_4:7115135-7115154 Msa0147210:intron 50.0%
GAGCGGAGGATACTTAGAAG+AGG + chr1_4:7115368-7115387 Msa0147210:CDS 50.0%
CGGAGGATACTTAGAAGAGG+AGG + chr1_4:7115371-7115390 Msa0147210:CDS 50.0%
GGTATGGACCTCATCCTACA+GGG + chr1_4:7115581-7115600 Msa0147210:intron 50.0%
GGAATTTCCCCACCACGTTC+CGG + chr1_4:7112838-7112857 Msa0147210:CDS 55.0%
TTGCAGACCCTCCTCGAAAC+CGG + chr1_4:7112889-7112908 Msa0147210:CDS 55.0%
!! TTAGGTTGGGTCCGGTTTCG+AGG - chr1_4:7112903-7112922 None:intergenic 55.0%
!! GAAAGGGGTTAGGTTGGGTC+CGG - chr1_4:7112911-7112930 None:intergenic 55.0%
TCAGACCGCTGACCACTTTG+AGG + chr1_4:7113040-7113059 Msa0147210:CDS 55.0%
!! GCTGACCACTTTGAGGCTCT+AGG + chr1_4:7113047-7113066 Msa0147210:CDS 55.0%
!! AAGAGGAGGAGGTACCACAC+AGG + chr1_4:7115385-7115404 Msa0147210:CDS 55.0%
TACCACACAGGAGCGAAGCT+AGG + chr1_4:7115397-7115416 Msa0147210:CDS 55.0%
AACCTAGCTTCGCTCCTGTG+TGG - chr1_4:7115402-7115421 None:intergenic 55.0%
GGGTATGGACCTCATCCTAC+AGG + chr1_4:7115580-7115599 Msa0147210:intron 55.0%
AGTAGCAGCCCTGTAGGATG+AGG - chr1_4:7115592-7115611 None:intergenic 55.0%
TTCCCCACCACGTTCCGGTA+AGG + chr1_4:7112843-7112862 Msa0147210:CDS 60.0%
AGCCTTACCGGAACGTGGTG+GGG - chr1_4:7112848-7112867 None:intergenic 60.0%
CAGCCTTACCGGAACGTGGT+GGG - chr1_4:7112849-7112868 None:intergenic 60.0%
ACAGCCTTACCGGAACGTGG+TGG - chr1_4:7112850-7112869 None:intergenic 60.0%
ACCACGTTCCGGTAAGGCTG+TGG + chr1_4:7112849-7112868 Msa0147210:CDS 60.0%
GTTGGGTCCGGTTTCGAGGA+GGG - chr1_4:7112899-7112918 None:intergenic 60.0%
GAGCAACAGTCCATCCCACG+CGG - chr1_4:7114714-7114733 None:intergenic 60.0%
GAATTCGGTTGGAGGAGCGG+AGG + chr1_4:7115354-7115373 Msa0147210:CDS 60.0%
GCCACAGCCTTACCGGAACG+TGG - chr1_4:7112853-7112872 None:intergenic 65.0%
GGTTGGGTCCGGTTTCGAGG+AGG - chr1_4:7112900-7112919 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 7112640 7115655 7112640 ID=Msa0147210;Name=Msa0147210
chr1_4 mRNA 7112640 7115655 7112640 ID=Msa0147210-mRNA-1;Parent=Msa0147210;Name=Msa0147210-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.76|0.78|1|0.92|0.85|14|158|413
chr1_4 exon 7112640 7112724 7112640 ID=Msa0147210-mRNA-1:exon:3100;Parent=Msa0147210-mRNA-1
chr1_4 exon 7112821 7112956 7112821 ID=Msa0147210-mRNA-1:exon:3101;Parent=Msa0147210-mRNA-1
chr1_4 exon 7113028 7113097 7113028 ID=Msa0147210-mRNA-1:exon:3102;Parent=Msa0147210-mRNA-1
chr1_4 exon 7113227 7113289 7113227 ID=Msa0147210-mRNA-1:exon:3103;Parent=Msa0147210-mRNA-1
chr1_4 exon 7113376 7113456 7113376 ID=Msa0147210-mRNA-1:exon:3104;Parent=Msa0147210-mRNA-1
chr1_4 exon 7113547 7113666 7113547 ID=Msa0147210-mRNA-1:exon:3105;Parent=Msa0147210-mRNA-1
chr1_4 exon 7113948 7113989 7113948 ID=Msa0147210-mRNA-1:exon:3106;Parent=Msa0147210-mRNA-1
chr1_4 exon 7114076 7114147 7114076 ID=Msa0147210-mRNA-1:exon:3107;Parent=Msa0147210-mRNA-1
chr1_4 exon 7114247 7114393 7114247 ID=Msa0147210-mRNA-1:exon:3108;Parent=Msa0147210-mRNA-1
chr1_4 exon 7114488 7114625 7114488 ID=Msa0147210-mRNA-1:exon:3109;Parent=Msa0147210-mRNA-1
chr1_4 exon 7114700 7114805 7114700 ID=Msa0147210-mRNA-1:exon:3110;Parent=Msa0147210-mRNA-1
chr1_4 exon 7114905 7114993 7114905 ID=Msa0147210-mRNA-1:exon:3111;Parent=Msa0147210-mRNA-1
chr1_4 exon 7115345 7115567 7115345 ID=Msa0147210-mRNA-1:exon:3112;Parent=Msa0147210-mRNA-1
chr1_4 exon 7115628 7115655 7115628 ID=Msa0147210-mRNA-1:exon:3113;Parent=Msa0147210-mRNA-1
chr1_4 CDS 7112640 7112724 7112640 ID=Msa0147210-mRNA-1:cds;Parent=Msa0147210-mRNA-1
chr1_4 CDS 7112821 7112956 7112821 ID=Msa0147210-mRNA-1:cds;Parent=Msa0147210-mRNA-1
chr1_4 CDS 7113028 7113097 7113028 ID=Msa0147210-mRNA-1:cds;Parent=Msa0147210-mRNA-1
chr1_4 CDS 7113227 7113289 7113227 ID=Msa0147210-mRNA-1:cds;Parent=Msa0147210-mRNA-1
chr1_4 CDS 7113376 7113456 7113376 ID=Msa0147210-mRNA-1:cds;Parent=Msa0147210-mRNA-1
chr1_4 CDS 7113547 7113666 7113547 ID=Msa0147210-mRNA-1:cds;Parent=Msa0147210-mRNA-1
chr1_4 CDS 7113948 7113989 7113948 ID=Msa0147210-mRNA-1:cds;Parent=Msa0147210-mRNA-1
chr1_4 CDS 7114076 7114147 7114076 ID=Msa0147210-mRNA-1:cds;Parent=Msa0147210-mRNA-1
chr1_4 CDS 7114247 7114393 7114247 ID=Msa0147210-mRNA-1:cds;Parent=Msa0147210-mRNA-1
chr1_4 CDS 7114488 7114625 7114488 ID=Msa0147210-mRNA-1:cds;Parent=Msa0147210-mRNA-1
chr1_4 CDS 7114700 7114805 7114700 ID=Msa0147210-mRNA-1:cds;Parent=Msa0147210-mRNA-1
chr1_4 CDS 7114905 7114993 7114905 ID=Msa0147210-mRNA-1:cds;Parent=Msa0147210-mRNA-1
chr1_4 CDS 7115345 7115437 7115345 ID=Msa0147210-mRNA-1:cds;Parent=Msa0147210-mRNA-1
chr1_4 three_prime_UTR 7115438 7115567 7115438 ID=Msa0147210-mRNA-1:three_prime_utr;Parent=Msa0147210-mRNA-1
chr1_4 three_prime_UTR 7115628 7115655 7115628 ID=Msa0147210-mRNA-1:three_prime_utr;Parent=Msa0147210-mRNA-1
Gene Sequence

>Msa0147210

ATGAAATCATTTACTGATCTGGGCTTATCTTCTGAATTGGCAAAAATTTGTGAAACAAAAAGGCCTTGGTATTTTGCGCAGAGAAGAAAAGATGATGTGTTTGGAATTTCCCCACCACGTTCCGGTAAGGCTGTGGCTTTTGTTCTTCCTATATTGCAGACCCTCCTCGAAACCGGACCCAACCTAACCCCTTTCTTTGCTTGTGTGCTCTATTCCACAAGGAGACTTGCCTTTCAGACCGCTGACCACTTTGAGGCTCTAGGTTCTCAATTTGGTGTCAAGTGTGCTATTATTGCTGAAGAGAACCGCAAGGAACATGAATCCATCCTCAACTCAGAGCAACCTCATATTATTGTTGGGAGGCCTGACCTAATCTTATATCACCTAAAACACACCCAAGGATTTTCTCTTGCTCTTGCTAGTTTAAAGTACTTGGTCATAGATGATGCACACCTGCTATCTTATGAGAACATTCTACATCAGATTTTAGAGATTTCAAGAATGATTCCTAGTGAGCGGAGAACATTTCTTTTTTCATCTACATTCACAGACGAGGTCCATACAATGCTAAGCATGTGTTTAAGGAATCCCGTGAAGATTGACCTATCTTCCAAATATTCTATTGCGGACACACTGCAAGAGAGTTGCTTTATGCAAGAAAATCACAAGGATTGCTACCTTGTACACACTCTCGCTGAAATGAGTGGAAAAAAATATATGGTATACACTCAGCGATGTGGTACAACGCTTCTTCTGGCTTTGATTCTTAAGAATCTTGGTTTCAGGGCCATCCCTATTATTAGTTATATGAGTCAGGCAAAGAAACTTGGATCCTTGAATGCGTTCAAGTCTGGGGAGTGCAATATTCTCATTTGTAGTGACTTTGTTAGTAAGGGACTAGATATTCCAGCAGTAGATATGGTGATTAACTACGACATTCCTTGGTATCCAAACGATTATATCTACCGCGTGGGATGGACTGTTGCTCATGTTAATGTTTCCGTTTCCTTTGTGAGCCCAGATGAAAGGAGACATTTCAATATGATTGAGAAACTTCTAGGCAAGAAGCTACCATTGTATACTGCACCATTTGAGGAAGTTTTGCTTTTGGAAGGGCGTGTTAGTGAGGCTGAAAGATTAGCACAAGAGGAAATGAAAGAATTCGGTTGGAGGAGCGGAGGATACTTAGAAGAGGAGGAGGTACCACACAGGAGCGAAGCTAGGTTGTCTTTAGAGCCCTGA
Protein sequence

>Msa0147210

MKSFTDLGLSSELAKICETKRPWYFAQRRKDDVFGISPPRSGKAVAFVLPILQTLLETGPNLTPFFACVLYSTRRLAFQTADHFEALGSQFGVKCAIIAEENRKEHESILNSEQPHIIVGRPDLILYHLKHTQGFSLALASLKYLVIDDAHLLSYENILHQILEISRMIPSERRTFLFSSTFTDEVHTMLSMCLRNPVKIDLSSKYSIADTLQESCFMQENHKDCYLVHTLAEMSGKKYMVYTQRCGTTLLLALILKNLGFRAIPIISYMSQAKKLGSLNAFKSGECNILICSDFVSKGLDIPAVDMVINYDIPWYPNDYIYRVGWTVAHVNVSVSFVSPDERRHFNMIEKLLGKKLPLYTAPFEEVLLLEGRVSEAERLAQEEMKEFGWRSGGYLEEEEVPHRSEARLSLEP*