AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0102320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102320 MtrunA17_Chr5g0429221 51.816 413 149 11 1 368 1 408 2.01e-124 364
Msa0102320 MtrunA17_Chr6g0483491 45.545 404 172 11 1 360 8 407 1.04e-90 279
Msa0102320 MtrunA17_Chr7g0236841 45.545 404 172 11 1 360 8 407 1.73e-90 278
Msa0102320 MtrunA17_Chr1g0155691 76.687 163 29 2 208 361 1 163 3.80e-75 231
Msa0102320 MtrunA17_Chr1g0155201 44.286 280 121 7 119 368 10 284 9.32e-58 191
Msa0102320 MtrunA17_Chr2g0310581 29.902 408 227 13 3 359 53 452 8.25e-37 139
Msa0102320 MtrunA17_Chr8g0349951 42.949 156 80 5 1 152 8 158 1.09e-26 103
Msa0102320 MtrunA17_Chr1g0155211 57.831 83 30 1 1 78 1 83 1.12e-23 94.0
Msa0102320 MtrunA17_Chr3g0098121 26.146 371 215 11 37 354 190 554 1.23e-22 99.8
Msa0102320 MtrunA17_Chr7g0247191 24.107 336 208 11 37 333 188 515 3.71e-16 79.7
Msa0102320 MtrunA17_Chr7g0247181 23.214 336 211 10 37 333 178 505 1.89e-15 77.8
Msa0102320 MtrunA17_Chr7g0247221 23.214 336 211 10 37 333 181 508 2.18e-15 77.4
Msa0102320 MtrunA17_Chr7g0271121 24.167 360 198 14 37 338 144 486 2.14e-14 74.7
Msa0102320 MtrunA17_Chr4g0039471 30.952 210 120 9 3 200 223 419 9.88e-13 68.9
Msa0102320 MtrunA17_Chr8g0347151 24.534 322 176 12 34 296 236 549 1.56e-12 68.9
Msa0102320 MtrunA17_Chr2g0299681 33.708 89 57 1 251 337 325 413 2.34e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102320 AT5G60990.1 40.528 417 184 14 1 360 8 417 4.11e-82 258
Msa0102320 AT1G16280.1 30.081 369 205 10 37 359 97 458 6.28e-37 139
Msa0102320 AT4G16630.1 27.676 383 225 13 3 337 168 546 1.09e-23 103
Msa0102320 AT5G65900.1 26.420 352 204 12 36 340 192 535 3.72e-20 92.4
Msa0102320 AT3G61240.2 25.000 344 204 11 37 337 163 495 1.25e-19 90.5
Msa0102320 AT3G61240.1 25.000 344 204 11 37 337 163 495 1.25e-19 90.5
Msa0102320 AT4G00660.1 23.699 346 206 12 37 337 170 502 7.25e-17 82.4
Msa0102320 AT4G00660.2 23.699 346 206 12 37 337 170 502 7.25e-17 82.4
Msa0102320 AT2G45810.1 23.837 344 208 10 37 337 193 525 7.51e-16 79.3
Msa0102320 AT1G31970.1 23.353 334 181 9 37 309 153 472 5.87e-14 73.6
Msa0102320 AT3G09620.1 24.179 335 205 10 37 341 435 750 3.49e-13 71.6
Msa0102320 AT3G09620.2 24.179 335 205 10 37 341 436 751 3.62e-13 71.6
Msa0102320 AT5G08610.1 22.680 388 222 13 37 359 421 795 3.79e-13 71.2
Msa0102320 AT5G08620.1 25.705 319 170 13 37 296 119 429 1.42e-12 69.3
Msa0102320 AT5G63630.1 24.062 320 180 10 34 296 90 403 1.49e-12 69.3
Msa0102320 AT5G63630.2 24.062 320 180 10 34 296 284 597 2.10e-12 68.9
Msa0102320 AT4G15850.1 28.472 144 92 3 200 332 325 468 8.05e-12 67.0

Find 98 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTAAGAATCTTGGTTTC+AGG 0.206964 1_3:-9065965 Msa0102320:CDS
GAGGCTCTAGGTTCTCAATT+TGG 0.247496 1_3:-9067371 Msa0102320:CDS
TGACTCATATAACTAATAAT+AGG 0.255686 1_3:+9065937 None:intergenic
AATATGATAGAGAAGCTTCT+AGG 0.276369 1_3:-9065523 Msa0102320:intron
GCTTTGATTCTTAAGAATCT+TGG 0.333972 1_3:-9065972 Msa0102320:CDS
TTGAAATGTCTCCTTTCATC+TGG 0.335756 1_3:+9065544 None:intergenic
AATGAAATCATTTACTGATC+TGG 0.339096 1_3:-9067817 Msa0102320:CDS
GTGTAGGAAATGAAAGAATT+CGG 0.357638 1_3:-9064973 Msa0102320:intron
AACAAAAGCCACAGTCTTAC+CGG 0.361264 1_3:+9067573 None:intergenic
TCCTTGAATGTGTTCAAGTC+TGG 0.365579 1_3:-9065804 Msa0102320:CDS
ATGTGGTACAGAGCTTCTTC+TGG 0.366677 1_3:-9065994 Msa0102320:CDS
AACACATGCTTAGCATTGTA+TGG 0.367564 1_3:+9066504 None:intergenic
TTAGGTTGGGTCCGGTTTCG+AGG 0.373050 1_3:+9067530 None:intergenic
AATGAGTGGAAGAAAATATA+TGG 0.389512 1_3:-9066030 Msa0102320:CDS
TCAGACCGCTGACCACTTTG+AGG 0.390680 1_3:-9067390 Msa0102320:CDS
TCGAGGAGGGTCTGCAATAT+AGG 0.392349 1_3:+9067547 None:intergenic
AAAGTATGCGCGCATACATC+AGG 0.397647 1_3:+9064896 None:intergenic
TTGTAGTGACTTTGTTAGTA+AGG 0.398889 1_3:-9065763 Msa0102320:CDS
TCTTGCTAGTTTAAAGTACT+TGG 0.402176 1_3:-9066992 Msa0102320:intron
GGAATTTCCCCACCACGTTC+CGG 0.403358 1_3:-9067592 Msa0102320:CDS
ATGAAATCATTTACTGATCT+GGG 0.404462 1_3:-9067816 Msa0102320:CDS
GCGCATACTTTGGTATTGAT+TGG 0.409449 1_3:-9064884 Msa0102320:three_prime_UTR
TCTGGGCTTATCTTCTGAAT+TGG 0.411456 1_3:-9067799 Msa0102320:CDS
GACTCATATAACTAATAATA+GGG 0.421629 1_3:+9065938 None:intergenic
GCAGGAAACGATGATGTGTT+TGG 0.436332 1_3:-9067613 Msa0102320:intron
TGATGTATGCGCGCATACTT+TGG 0.439855 1_3:-9064894 Msa0102320:three_prime_UTR
AAAATCCTTGGGTGTGTGTT+AGG 0.445582 1_3:+9067022 None:intergenic
CAAGAGCAAGAGAAAATCCT+TGG 0.448775 1_3:+9067010 None:intergenic
AGATATTCCAGCGGTAGATA+TGG 0.449221 1_3:-9065736 Msa0102320:CDS
AAAAGCAAAACTTCCTCAAA+TGG 0.452304 1_3:+9065381 None:intergenic
TTGCAGACCCTCCTCGAAAC+CGG 0.455169 1_3:-9067541 Msa0102320:CDS
CTTAGAGGAGGAGGTAAGCT+AGG 0.455846 1_3:-9064932 Msa0102320:exon
CCCAGACTTGAACACATTCA+AGG 0.458832 1_3:+9065803 None:intergenic
TGATTAACTACGACATTCCT+TGG 0.462912 1_3:-9065713 Msa0102320:CDS
GAGGAGCGGTGGATACTTAG+AGG 0.465337 1_3:-9064947 Msa0102320:CDS
TTAACACTTACAATAATATG+AGG 0.470966 1_3:+9067147 None:intergenic
GTTGGGTCCGGTTTCGAGGA+GGG 0.479153 1_3:+9067534 None:intergenic
CCTTGAATGTGTTCAAGTCT+GGG 0.482282 1_3:-9065803 Msa0102320:CDS
ATTGTATCCTGCACCATTTG+AGG 0.486127 1_3:-9065394 Msa0102320:CDS
GAAAGGGGTTAGGTTGGGTC+CGG 0.486976 1_3:+9067522 None:intergenic
AAGAATGATTCCTAGTGAGC+AGG 0.499907 1_3:-9066814 Msa0102320:CDS
TAGAGCACACAAGCAAAGAA+AGG 0.502525 1_3:+9067505 None:intergenic
AGGTGATATAAGATTAGGTC+AGG 0.503170 1_3:+9067042 None:intergenic
AGAGCACACAAGCAAAGAAA+GGG 0.505838 1_3:+9067506 None:intergenic
CCTTTGTGAGCCCAGATGAA+AGG 0.506008 1_3:-9065555 Msa0102320:CDS
GCTCTAGGTTCTCAATTTGG+TGG 0.508954 1_3:-9067368 Msa0102320:CDS
GAAATGTTCTCCTGCTCACT+AGG 0.510444 1_3:+9066804 None:intergenic
GTGTTAGGTGATATAAGATT+AGG 0.513506 1_3:+9067037 None:intergenic
AGCAAAGAAAGGGGTTAGGT+TGG 0.518164 1_3:+9067516 None:intergenic
GCAAAGAAAGGGGTTAGGTT+GGG 0.520003 1_3:+9067517 None:intergenic
TGTAGTGACTTTGTTAGTAA+GGG 0.522265 1_3:-9065762 Msa0102320:CDS
CTTGTGTGCTCTATTCCACA+AGG 0.529112 1_3:-9067495 Msa0102320:intron
GAATGTTCTCATAAGATAGC+AGG 0.549053 1_3:+9066859 None:intergenic
ATTATATCTACCGCGTGGGA+TGG 0.549999 1_3:-9065606 Msa0102320:CDS
AAAACTTCCTCAAATGGTGC+AGG 0.550172 1_3:+9065387 None:intergenic
TGAAATGTCTCCTTTCATCT+GGG 0.550468 1_3:+9065545 None:intergenic
TCTTACTCTTCAAGGTTGGG+AGG 0.551040 1_3:-9067065 Msa0102320:intron
CAGTCTTACCGGAACGTGGT+GGG 0.555663 1_3:+9067584 None:intergenic
AGGAAATGAAAGAATTCGGT+TGG 0.559186 1_3:-9064969 Msa0102320:CDS
CACAAGCAAAGAAAGGGGTT+AGG 0.561458 1_3:+9067512 None:intergenic
AAATGAAAGAATTCGGTTGG+AGG 0.566198 1_3:-9064966 Msa0102320:CDS
GGTTGGGTCCGGTTTCGAGG+AGG 0.566226 1_3:+9067533 None:intergenic
AGTCTTACCGGAACGTGGTG+GGG 0.570239 1_3:+9067585 None:intergenic
CGGTGGATACTTAGAGGAGG+AGG 0.572139 1_3:-9064941 Msa0102320:CDS
GCTGACCACTTTGAGGCTCT+AGG 0.576835 1_3:-9067383 Msa0102320:CDS
TTAATCACCATATCTACCGC+TGG 0.579180 1_3:+9065729 None:intergenic
AAAGAATTCGGTTGGAGGAG+CGG 0.586592 1_3:-9064961 Msa0102320:CDS
AAGAGCAAGAGAAAATCCTT+GGG 0.587885 1_3:+9067011 None:intergenic
GGATGGATTCATGTTCCTTG+CGG 0.596960 1_3:+9067184 None:intergenic
TCAAATGGTGCAGGATACAA+TGG 0.597106 1_3:+9065396 None:intergenic
AAAGTGGTCAGCGGTCTGAA+AGG 0.598234 1_3:+9067394 None:intergenic
TTTCAGCGAGAGTGTATACA+AGG 0.601075 1_3:+9066051 None:intergenic
GGCTGAAAGATTAGCACAAG+AGG 0.602507 1_3:-9065340 Msa0102320:intron
AGGTTGCTCTGAGTTGAGGA+TGG 0.613304 1_3:+9067167 None:intergenic
CATCTTACGTTTGGATACCA+AGG 0.615406 1_3:+9065696 None:intergenic
TACACTCTCGCTGAAATGAG+TGG 0.616270 1_3:-9066044 Msa0102320:CDS
TTTGGAAGGGCGTGTTAGTG+AGG 0.618670 1_3:-9065361 Msa0102320:CDS
TTCATCTACATTCACAGACG+AGG 0.628178 1_3:-9066777 Msa0102320:intron
GAATTCGGTTGGAGGAGCGG+TGG 0.629658 1_3:-9064958 Msa0102320:CDS
AAGTATGCGCGCATACATCA+GGG 0.633481 1_3:+9064897 None:intergenic
TATGAGGTTGCTCTGAGTTG+AGG 0.634527 1_3:+9067163 None:intergenic
CCTTTCATCTGGGCTCACAA+AGG 0.638109 1_3:+9065555 None:intergenic
CTTGAATGTGTTCAAGTCTG+GGG 0.638978 1_3:-9065802 Msa0102320:CDS
CAGGATTATATCTACCGCGT+GGG 0.649705 1_3:-9065610 Msa0102320:CDS
TCTCTCTGCGCAAAATACCA+AGG 0.650995 1_3:+9067753 None:intergenic
ACAGTCTTACCGGAACGTGG+TGG 0.656212 1_3:+9067583 None:intergenic
GCCACAGTCTTACCGGAACG+TGG 0.662479 1_3:+9067580 None:intergenic
TAGAGCCTCAAAGTGGTCAG+CGG 0.665980 1_3:+9067385 None:intergenic
ACCACGTTCCGGTAAGACTG+TGG 0.666901 1_3:-9067581 Msa0102320:CDS
GAGAACCTAGAGCCTCAAAG+TGG 0.679438 1_3:+9067378 None:intergenic
GAGCGGTGGATACTTAGAGG+AGG 0.686694 1_3:-9064944 Msa0102320:CDS
GAGCACACAAGCAAAGAAAG+GGG 0.686944 1_3:+9067507 None:intergenic
TATCACCTAACACACACCCA+AGG 0.693371 1_3:-9067027 Msa0102320:CDS
GATTGCTGAAGAGAACCGCA+AGG 0.696368 1_3:-9067199 Msa0102320:CDS
ACAGGATTATATCTACCGCG+TGG 0.696590 1_3:-9065611 Msa0102320:intron
ATGGTATACACTCAGCAATG+TGG 0.716399 1_3:-9066011 Msa0102320:CDS
TAAGGGACTAGATATTCCAG+CGG 0.751272 1_3:-9065745 Msa0102320:CDS
GAGCAACAGTCCATCCCACG+CGG 0.775337 1_3:+9065596 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGTAATAATGTAAAAA+CGG + chr1_3:9065582-9065601 None:intergenic 10.0%
!! ATAATATTTGTAAAACATTA+AGG + chr1_3:9066071-9066090 None:intergenic 10.0%
!!! TTAACATAATAACTTTTTAT+AGG - chr1_3:9066685-9066704 Msa0102320:intron 10.0%
!!! TCATAAATATAAAAAAGTTT+TGG + chr1_3:9067809-9067828 None:intergenic 10.0%
!! TAGTTTAAGAAAAAAGAAAA+AGG + chr1_3:9065103-9065122 None:intergenic 15.0%
!!! TTTTTCTTTTTTCTTAAACT+AGG - chr1_3:9065102-9065121 Msa0102320:intron 15.0%
!! AGAAATTACAATTATAATAC+AGG + chr1_3:9066633-9066652 None:intergenic 15.0%
!! AAGTTATTATGTTAAGAATT+AGG + chr1_3:9066680-9066699 None:intergenic 15.0%
!!! CAAGTTTTTTTTTTTTTTTC+AGG - chr1_3:9067097-9067116 Msa0102320:intron 15.0%
!!! ATATAGAAAAGTTAAGTTTT+TGG - chr1_3:9067264-9067283 Msa0102320:intron 15.0%
!!! TTGTCAGTTATTTTATTATT+TGG - chr1_3:9067699-9067718 Msa0102320:intron 15.0%
!!! AAAATCTAAAACACATATTA+TGG - chr1_3:9067741-9067760 Msa0102320:CDS 15.0%
!!! AAATCTAAAACACATATTAT+GGG - chr1_3:9067742-9067761 Msa0102320:CDS 15.0%
!! CAAAAATTTGTGAAACAAAA+AGG - chr1_3:9064750-9064769 Msa0102320:intron 20.0%
!! ATTGAATTATGCAATTTCAT+CGG + chr1_3:9065222-9065241 None:intergenic 20.0%
!! TATAGAAAAAGCAATCAAAA+TGG + chr1_3:9065307-9065326 None:intergenic 20.0%
!! TTAACACTTACAATAATATG+AGG + chr1_3:9065382-9065401 None:intergenic 20.0%
!!! TTTTTATTTCTTACTCTTCA+AGG - chr1_3:9065453-9065472 Msa0102320:intron 20.0%
!! AAACATTCCTATAAATGAAA+AGG - chr1_3:9065866-9065885 Msa0102320:intron 20.0%
!! AACATTCCTATAAATGAAAA+GGG - chr1_3:9065867-9065886 Msa0102320:intron 20.0%
!!! TTAAGAAATTCAACATTTTC+TGG + chr1_3:9066342-9066361 None:intergenic 20.0%
!! GAATTTCTTAATATTAGAAG+AGG - chr1_3:9066351-9066370 Msa0102320:intron 20.0%
!! GACTCATATAACTAATAATA+GGG + chr1_3:9066591-9066610 None:intergenic 20.0%
!! TGACTCATATAACTAATAAT+AGG + chr1_3:9066592-9066611 None:intergenic 20.0%
!! TATTATTAGTTATATGAGTC+AGG - chr1_3:9066591-9066610 Msa0102320:intron 20.0%
!!! TGTTTGTATTTTATTTGTGT+AGG - chr1_3:9067537-9067556 Msa0102320:CDS 20.0%
! ATGAAATCATTTACTGATCT+GGG - chr1_3:9064710-9064729 Msa0102320:three_prime_UTR 25.0%
! TAAATGATTATGATACCTTG+TGG + chr1_3:9065049-9065068 None:intergenic 25.0%
! TTGAATTATGCAATTTCATC+GGG + chr1_3:9065221-9065240 None:intergenic 25.0%
!! ATAAACTTCTAGAAACTTCT+TGG - chr1_3:9065788-9065807 Msa0102320:CDS 25.0%
!! TAAACTTCTAGAAACTTCTT+GGG - chr1_3:9065789-9065808 Msa0102320:CDS 25.0%
! TGAAATGTAAAACTCAAAAG+TGG + chr1_3:9065847-9065866 None:intergenic 25.0%
! CAATAGAATATTTGGAAGAT+AGG + chr1_3:9066156-9066175 None:intergenic 25.0%
! ATCTTCCAAATATTCTATTG+CGG - chr1_3:9066156-9066175 Msa0102320:intron 25.0%
!!! TAGAAGTTTTGTTTGATGTT+TGG - chr1_3:9066380-9066399 Msa0102320:intron 25.0%
! AATGAGTGGAAGAAAATATA+TGG - chr1_3:9066496-9066515 Msa0102320:intron 25.0%
!! TTTTTATAGGCAAAGAAACT+TGG - chr1_3:9066698-9066717 Msa0102320:intron 25.0%
!!! TCTTTAAAATGGCAAAGTAA+AGG + chr1_3:9067049-9067068 None:intergenic 25.0%
!! AAAGCGTCATAGTATATAAT+TGG - chr1_3:9067072-9067091 Msa0102320:intron 25.0%
!! ATTGAGCATAGTTATGTTTT+AGG - chr1_3:9067220-9067239 Msa0102320:intron 25.0%
!! CTTAACTTTTCTATATAGAC+AGG + chr1_3:9067260-9067279 None:intergenic 25.0%
!!! AGTTAAGTTTTTGGATTTTG+TGG - chr1_3:9067273-9067292 Msa0102320:intron 25.0%
!! TCTTATTATAAAAGCTTGCT+AGG + chr1_3:9067392-9067411 None:intergenic 25.0%
!! TATGATGAGTGATTTGAAAT+TGG - chr1_3:9067465-9067484 Msa0102320:intron 25.0%
!!! CAACATTTTGACTTTTAAAG+TGG - chr1_3:9067671-9067690 Msa0102320:intron 25.0%
! TAAAACACATATTATGGGTT+TGG - chr1_3:9067747-9067766 Msa0102320:CDS 25.0%
TGAATTATGCAATTTCATCG+GGG + chr1_3:9065220-9065239 None:intergenic 30.0%
TATTTCTTACTCTTCAAGGT+TGG - chr1_3:9065457-9065476 Msa0102320:intron 30.0%
ATTTCTTACTCTTCAAGGTT+GGG - chr1_3:9065458-9065477 Msa0102320:intron 30.0%
GTGTTAGGTGATATAAGATT+AGG + chr1_3:9065492-9065511 None:intergenic 30.0%
! TCTTGCTAGTTTAAAGTACT+TGG - chr1_3:9065534-9065553 Msa0102320:CDS 30.0%
! TTCAACATTTTCTGGACAAA+GGG + chr1_3:9066334-9066353 None:intergenic 30.0%
! ATTCAACATTTTCTGGACAA+AGG + chr1_3:9066335-9066354 None:intergenic 30.0%
GCTTTGATTCTTAAGAATCT+TGG - chr1_3:9066554-9066573 Msa0102320:intron 30.0%
TTCTTAAGAATCTTGGTTTC+AGG - chr1_3:9066561-9066580 Msa0102320:intron 30.0%
GAATTAGGCATATTTCTTGT+TGG + chr1_3:9066665-9066684 None:intergenic 30.0%
TTGTAGTGACTTTGTTAGTA+AGG - chr1_3:9066763-9066782 Msa0102320:intron 30.0%
TGTAGTGACTTTGTTAGTAA+GGG - chr1_3:9066764-9066783 Msa0102320:intron 30.0%
TATATAGCACATCTTACGTT+TGG + chr1_3:9066842-9066861 None:intergenic 30.0%
AATATGATAGAGAAGCTTCT+AGG - chr1_3:9067003-9067022 Msa0102320:CDS 30.0%
!! GACGCTTTTGTTCTTTAAAA+TGG + chr1_3:9067060-9067079 None:intergenic 30.0%
AAAAGCAAAACTTCCTCAAA+TGG + chr1_3:9067148-9067167 None:intergenic 30.0%
! ATTTGAGGAAGTTTTGCTTT+TGG - chr1_3:9067147-9067166 Msa0102320:intron 30.0%
GCTATCAATGAAGACAAATT+GGG + chr1_3:9067316-9067335 None:intergenic 30.0%
TGCTATCAATGAAGACAAAT+TGG + chr1_3:9067317-9067336 None:intergenic 30.0%
! TCTTCATTGATAGCAAAAGA+GGG - chr1_3:9067322-9067341 Msa0102320:intron 30.0%
GTGTAGGAAATGAAAGAATT+CGG - chr1_3:9067553-9067572 Msa0102320:CDS 30.0%
TTTGTGAAACAAAAAGGCCT+TGG - chr1_3:9064756-9064775 Msa0102320:intron 35.0%
ATAGATACCTTGTAGTGCAT+GGG + chr1_3:9064820-9064839 None:intergenic 35.0%
AGGTGATATAAGATTAGGTC+AGG + chr1_3:9065487-9065506 None:intergenic 35.0%
AAGAGCAAGAGAAAATCCTT+GGG + chr1_3:9065518-9065537 None:intergenic 35.0%
GAATGTTCTCATAAGATAGC+AGG + chr1_3:9065670-9065689 None:intergenic 35.0%
CCTATAAATGAAAAGGGACT+CGG - chr1_3:9065873-9065892 Msa0102320:intron 35.0%
AATTCCACTCTTGTGATTTC+AGG - chr1_3:9065998-9066017 Msa0102320:CDS 35.0%
AACACATGCTTAGCATTGTA+TGG + chr1_3:9066025-9066044 None:intergenic 35.0%
CAATGCTAAGCATGTGTTTA+AGG - chr1_3:9066027-9066046 Msa0102320:CDS 35.0%
ACATTAAGGTTGTACCTTCA+CGG + chr1_3:9066057-9066076 None:intergenic 35.0%
ACATGAGTCTAGCAATAGAT+TGG + chr1_3:9066097-9066116 None:intergenic 35.0%
CTTTATGCAAGAAAACCACA+AGG - chr1_3:9066298-9066317 Msa0102320:intron 35.0%
TGATTAACTACGACATTCCT+TGG - chr1_3:9066813-9066832 Msa0102320:CDS 35.0%
ATATAATCCTGTTGATCACG+CGG + chr1_3:9066907-9066926 None:intergenic 35.0%
TGAAATGTCTCCTTTCATCT+GGG + chr1_3:9066984-9067003 None:intergenic 35.0%
TTGAAATGTCTCCTTTCATC+TGG + chr1_3:9066985-9067004 None:intergenic 35.0%
!! AGGAAGTTTTGCTTTTGGAA+GGG - chr1_3:9067152-9067171 Msa0102320:intron 35.0%
! TTTGTGGCAAGTTGAAATTG+TGG - chr1_3:9067289-9067308 Msa0102320:intron 35.0%
! GTCTTCATTGATAGCAAAAG+AGG - chr1_3:9067321-9067340 Msa0102320:intron 35.0%
AGGAAATGAAAGAATTCGGT+TGG - chr1_3:9067557-9067576 Msa0102320:CDS 35.0%
AAATGAAAGAATTCGGTTGG+AGG - chr1_3:9067560-9067579 Msa0102320:CDS 35.0%
TCTGGGCTTATCTTCTGAAT+TGG - chr1_3:9064727-9064746 Msa0102320:intron 40.0%
TAGATACCTTGTAGTGCATG+GGG + chr1_3:9064819-9064838 None:intergenic 40.0%
GATAGATACCTTGTAGTGCA+TGG + chr1_3:9064821-9064840 None:intergenic 40.0%
ATTCATCTCATTCTGCATGC+AGG - chr1_3:9064895-9064914 Msa0102320:three_prime_UTR 40.0%
AACAAAAGCCACAGTCTTAC+CGG + chr1_3:9064956-9064975 None:intergenic 40.0%
AGAGCACACAAGCAAAGAAA+GGG + chr1_3:9065023-9065042 None:intergenic 40.0%
TAGAGCACACAAGCAAAGAA+AGG + chr1_3:9065024-9065043 None:intergenic 40.0%
GTAACCAACCAGCACATATA+TGG + chr1_3:9065275-9065294 None:intergenic 40.0%
AAAATCCTTGGGTGTGTGTT+AGG + chr1_3:9065507-9065526 None:intergenic 40.0%
CAAGAGCAAGAGAAAATCCT+TGG + chr1_3:9065519-9065538 None:intergenic 40.0%
AAGAATGATTCCTAGTGAGC+AGG - chr1_3:9065712-9065731 Msa0102320:CDS 40.0%
TTCATCTACATTCACAGACG+AGG - chr1_3:9065749-9065768 Msa0102320:CDS 40.0%
! CCGAGTCCCTTTTCATTTAT+AGG + chr1_3:9065876-9065895 None:intergenic 40.0%
! TGATCTCGGATTTTACTGCA+GGG + chr1_3:9065902-9065921 None:intergenic 40.0%
CAGTAAAATCCGAGATCAGA+CGG - chr1_3:9065904-9065923 Msa0102320:intron 40.0%
TATGTAGAACCGTCTGATCT+CGG + chr1_3:9065916-9065935 None:intergenic 40.0%
CATTAAGGTTGTACCTTCAC+GGG + chr1_3:9066056-9066075 None:intergenic 40.0%
CAATTCCATGCTTCTTGCAT+AGG - chr1_3:9066445-9066464 Msa0102320:intron 40.0%
ACAATCCTATGCAAGAAGCA+TGG + chr1_3:9066453-9066472 None:intergenic 40.0%
! TTTCAGCGAGAGTGTATACA+AGG + chr1_3:9066478-9066497 None:intergenic 40.0%
ATGGTATACACTCAGCAATG+TGG - chr1_3:9066515-9066534 Msa0102320:intron 40.0%
TCCTTGAATGTGTTCAAGTC+TGG - chr1_3:9066722-9066741 Msa0102320:intron 40.0%
CCTTGAATGTGTTCAAGTCT+GGG - chr1_3:9066723-9066742 Msa0102320:intron 40.0%
CTTGAATGTGTTCAAGTCTG+GGG - chr1_3:9066724-9066743 Msa0102320:intron 40.0%
TAAGGGACTAGATATTCCAG+CGG - chr1_3:9066781-9066800 Msa0102320:CDS 40.0%
AGATATTCCAGCGGTAGATA+TGG - chr1_3:9066790-9066809 Msa0102320:CDS 40.0%
TTAATCACCATATCTACCGC+TGG + chr1_3:9066800-9066819 None:intergenic 40.0%
CATCTTACGTTTGGATACCA+AGG + chr1_3:9066833-9066852 None:intergenic 40.0%
GATAGAGAAGCTTCTAGGTT+AGG - chr1_3:9067008-9067027 Msa0102320:CDS 40.0%
TCAAATGGTGCAGGATACAA+TGG + chr1_3:9067133-9067152 None:intergenic 40.0%
ATTGTATCCTGCACCATTTG+AGG - chr1_3:9067132-9067151 Msa0102320:intron 40.0%
AAAACTTCCTCAAATGGTGC+AGG + chr1_3:9067142-9067161 None:intergenic 40.0%
!! GAGGAAGTTTTGCTTTTGGA+AGG - chr1_3:9067151-9067170 Msa0102320:intron 40.0%
TAGCAAAAGAGGGAAAAGCT+TGG - chr1_3:9067332-9067351 Msa0102320:intron 40.0%
AGCAAAAGAGGGAAAAGCTT+GGG - chr1_3:9067333-9067352 Msa0102320:intron 40.0%
!! GCGCATACTTTGGTATTGAT+TGG - chr1_3:9067642-9067661 Msa0102320:intron 40.0%
TCTCTCTGCGCAAAATACCA+AGG + chr1_3:9064776-9064795 None:intergenic 45.0%
GCAGGAAACGATGATGTGTT+TGG - chr1_3:9064913-9064932 Msa0102320:three_prime_UTR 45.0%
GCAAAGAAAGGGGTTAGGTT+GGG + chr1_3:9065012-9065031 None:intergenic 45.0%
AGCAAAGAAAGGGGTTAGGT+TGG + chr1_3:9065013-9065032 None:intergenic 45.0%
CACAAGCAAAGAAAGGGGTT+AGG + chr1_3:9065017-9065036 None:intergenic 45.0%
GAGCACACAAGCAAAGAAAG+GGG + chr1_3:9065022-9065041 None:intergenic 45.0%
CTTGTGTGCTCTATTCCACA+AGG - chr1_3:9065031-9065050 Msa0102320:intron 45.0%
!! GAGGCTCTAGGTTCTCAATT+TGG - chr1_3:9065155-9065174 Msa0102320:intron 45.0%
! GCTCTAGGTTCTCAATTTGG+TGG - chr1_3:9065158-9065177 Msa0102320:intron 45.0%
GCAAGAGACCATATATGTGC+TGG - chr1_3:9065264-9065283 Msa0102320:intron 45.0%
! GAGACCATATATGTGCTGGT+TGG - chr1_3:9065268-9065287 Msa0102320:intron 45.0%
! GGATGGATTCATGTTCCTTG+CGG + chr1_3:9065345-9065364 None:intergenic 45.0%
! TATGAGGTTGCTCTGAGTTG+AGG + chr1_3:9065366-9065385 None:intergenic 45.0%
TCTTACTCTTCAAGGTTGGG+AGG - chr1_3:9065461-9065480 Msa0102320:intron 45.0%
TATCACCTAACACACACCCA+AGG - chr1_3:9065499-9065518 Msa0102320:intron 45.0%
GAAATGTTCTCCTGCTCACT+AGG + chr1_3:9065725-9065744 None:intergenic 45.0%
! CTGATCTCGGATTTTACTGC+AGG + chr1_3:9065903-9065922 None:intergenic 45.0%
TGGACCTGAAATCACAAGAG+TGG + chr1_3:9066005-9066024 None:intergenic 45.0%
GTGTTTAAGGAATCCCGTGA+AGG - chr1_3:9066040-9066059 Msa0102320:CDS 45.0%
AAGGGAGAAGAGAAACCTTG+TGG + chr1_3:9066316-9066335 None:intergenic 45.0%
TACACTCTCGCTGAAATGAG+TGG - chr1_3:9066482-9066501 Msa0102320:intron 45.0%
ATGTGGTACAGAGCTTCTTC+TGG - chr1_3:9066532-9066551 Msa0102320:intron 45.0%
CCCAGACTTGAACACATTCA+AGG + chr1_3:9066726-9066745 None:intergenic 45.0%
ACAGGATTATATCTACCGCG+TGG - chr1_3:9066915-9066934 Msa0102320:intron 45.0%
CAGGATTATATCTACCGCGT+GGG - chr1_3:9066916-9066935 Msa0102320:intron 45.0%
ATTATATCTACCGCGTGGGA+TGG - chr1_3:9066920-9066939 Msa0102320:intron 45.0%
GGCTGAAAGATTAGCACAAG+AGG - chr1_3:9067186-9067205 Msa0102320:CDS 45.0%
GCAAAAGAGGGAAAAGCTTG+GGG - chr1_3:9067334-9067353 Msa0102320:intron 45.0%
CTTGGGGTGAATGGTGATTA+GGG - chr1_3:9067350-9067369 Msa0102320:intron 45.0%
AAAGAATTCGGTTGGAGGAG+CGG - chr1_3:9067565-9067584 Msa0102320:CDS 45.0%
AAGTATGCGCGCATACATCA+GGG + chr1_3:9067632-9067651 None:intergenic 45.0%
AAAGTATGCGCGCATACATC+AGG + chr1_3:9067633-9067652 None:intergenic 45.0%
TGATGTATGCGCGCATACTT+TGG - chr1_3:9067632-9067651 Msa0102320:intron 45.0%
AATTGTAGTAGCAGCCCTGT+AGG + chr1_3:9067780-9067799 None:intergenic 45.0%
GTGATTCCCCATGCACTACA+AGG - chr1_3:9064810-9064829 Msa0102320:three_prime_UTR 50.0%
TCGAGGAGGGTCTGCAATAT+AGG + chr1_3:9064982-9065001 None:intergenic 50.0%
AAAGTGGTCAGCGGTCTGAA+AGG + chr1_3:9065135-9065154 None:intergenic 50.0%
TAGAGCCTCAAAGTGGTCAG+CGG + chr1_3:9065144-9065163 None:intergenic 50.0%
GAGAACCTAGAGCCTCAAAG+TGG + chr1_3:9065151-9065170 None:intergenic 50.0%
GATTGCTGAAGAGAACCGCA+AGG - chr1_3:9065327-9065346 Msa0102320:intron 50.0%
! AGGTTGCTCTGAGTTGAGGA+TGG + chr1_3:9065362-9065381 None:intergenic 50.0%
! GACTGCTCTGCATTTTGAGC+AGG - chr1_3:9065624-9065643 Msa0102320:intron 50.0%
GAGTCAGGTAACTGTACGAC+AGG - chr1_3:9066606-9066625 Msa0102320:intron 50.0%
CCTTTCATCTGGGCTCACAA+AGG + chr1_3:9066974-9066993 None:intergenic 50.0%
CCTTTGTGAGCCCAGATGAA+AGG - chr1_3:9066971-9066990 Msa0102320:intron 50.0%
! TTTGGAAGGGCGTGTTAGTG+AGG - chr1_3:9067165-9067184 Msa0102320:CDS 50.0%
AGGGAAAAGCTTGGGGTGAA+TGG - chr1_3:9067341-9067360 Msa0102320:intron 50.0%
GCTTGGGGTGAATGGTGATT+AGG - chr1_3:9067349-9067368 Msa0102320:intron 50.0%
CTTAGAGGAGGAGGTAAGCT+AGG - chr1_3:9067594-9067613 Msa0102320:CDS 50.0%
GGTTTGGACCTCATCCTACA+GGG - chr1_3:9067763-9067782 Msa0102320:CDS 50.0%
GGAATTTCCCCACCACGTTC+CGG - chr1_3:9064934-9064953 Msa0102320:CDS 55.0%
AGTCTTACCGGAACGTGGTG+GGG + chr1_3:9064944-9064963 None:intergenic 55.0%
CAGTCTTACCGGAACGTGGT+GGG + chr1_3:9064945-9064964 None:intergenic 55.0%
ACAGTCTTACCGGAACGTGG+TGG + chr1_3:9064946-9064965 None:intergenic 55.0%
ACCACGTTCCGGTAAGACTG+TGG - chr1_3:9064945-9064964 Msa0102320:CDS 55.0%
TTGCAGACCCTCCTCGAAAC+CGG - chr1_3:9064985-9065004 Msa0102320:intron 55.0%
!! TTAGGTTGGGTCCGGTTTCG+AGG + chr1_3:9064999-9065018 None:intergenic 55.0%
!! GAAAGGGGTTAGGTTGGGTC+CGG + chr1_3:9065007-9065026 None:intergenic 55.0%
TCAGACCGCTGACCACTTTG+AGG - chr1_3:9065136-9065155 Msa0102320:intron 55.0%
!! GCTGACCACTTTGAGGCTCT+AGG - chr1_3:9065143-9065162 Msa0102320:intron 55.0%
CTCATGACCGCGTGATCAAC+AGG - chr1_3:9066897-9066916 Msa0102320:intron 55.0%
GAGGAGCGGTGGATACTTAG+AGG - chr1_3:9067579-9067598 Msa0102320:CDS 55.0%
GAGCGGTGGATACTTAGAGG+AGG - chr1_3:9067582-9067601 Msa0102320:CDS 55.0%
CGGTGGATACTTAGAGGAGG+AGG - chr1_3:9067585-9067604 Msa0102320:CDS 55.0%
GGGTTTGGACCTCATCCTAC+AGG - chr1_3:9067762-9067781 Msa0102320:CDS 55.0%
AGTAGCAGCCCTGTAGGATG+AGG + chr1_3:9067774-9067793 None:intergenic 55.0%
GCCACAGTCTTACCGGAACG+TGG + chr1_3:9064949-9064968 None:intergenic 60.0%
GTTGGGTCCGGTTTCGAGGA+GGG + chr1_3:9064995-9065014 None:intergenic 60.0%
GAGCAACAGTCCATCCCACG+CGG + chr1_3:9066933-9066952 None:intergenic 60.0%
GAATTCGGTTGGAGGAGCGG+TGG - chr1_3:9067568-9067587 Msa0102320:CDS 60.0%
GGTTGGGTCCGGTTTCGAGG+AGG + chr1_3:9064996-9065015 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 9064710 9067838 9064710 ID=Msa0102320;Name=Msa0102320
chr1_3 mRNA 9064710 9067838 9064710 ID=Msa0102320-mRNA-1;Parent=Msa0102320;Name=Msa0102320-mRNA-1;_AED=0.20;_eAED=0.21;_QI=0|0.5|0.53|1|0.58|0.61|13|163|370
chr1_3 exon 9064710 9064738 9064710 ID=Msa0102320-mRNA-1:exon:3655;Parent=Msa0102320-mRNA-1
chr1_3 exon 9064799 9064989 9064799 ID=Msa0102320-mRNA-1:exon:3654;Parent=Msa0102320-mRNA-1
chr1_3 exon 9065341 9065429 9065341 ID=Msa0102320-mRNA-1:exon:3653;Parent=Msa0102320-mRNA-1
chr1_3 exon 9065524 9065629 9065524 ID=Msa0102320-mRNA-1:exon:3652;Parent=Msa0102320-mRNA-1
chr1_3 exon 9065704 9065841 9065704 ID=Msa0102320-mRNA-1:exon:3651;Parent=Msa0102320-mRNA-1
chr1_3 exon 9065950 9066081 9065950 ID=Msa0102320-mRNA-1:exon:3650;Parent=Msa0102320-mRNA-1
chr1_3 exon 9066509 9066528 9066509 ID=Msa0102320-mRNA-1:exon:3649;Parent=Msa0102320-mRNA-1
chr1_3 exon 9066778 9066895 9066778 ID=Msa0102320-mRNA-1:exon:3648;Parent=Msa0102320-mRNA-1
chr1_3 exon 9066993 9067073 9066993 ID=Msa0102320-mRNA-1:exon:3647;Parent=Msa0102320-mRNA-1
chr1_3 exon 9067158 9067220 9067158 ID=Msa0102320-mRNA-1:exon:3646;Parent=Msa0102320-mRNA-1
chr1_3 exon 9067352 9067424 9067352 ID=Msa0102320-mRNA-1:exon:3645;Parent=Msa0102320-mRNA-1
chr1_3 exon 9067496 9067631 9067496 ID=Msa0102320-mRNA-1:exon:3644;Parent=Msa0102320-mRNA-1
chr1_3 exon 9067739 9067838 9067739 ID=Msa0102320-mRNA-1:exon:3643;Parent=Msa0102320-mRNA-1
chr1_3 CDS 9067739 9067838 9067739 ID=Msa0102320-mRNA-1:cds;Parent=Msa0102320-mRNA-1
chr1_3 CDS 9067496 9067631 9067496 ID=Msa0102320-mRNA-1:cds;Parent=Msa0102320-mRNA-1
chr1_3 CDS 9067352 9067424 9067352 ID=Msa0102320-mRNA-1:cds;Parent=Msa0102320-mRNA-1
chr1_3 CDS 9067158 9067220 9067158 ID=Msa0102320-mRNA-1:cds;Parent=Msa0102320-mRNA-1
chr1_3 CDS 9066993 9067073 9066993 ID=Msa0102320-mRNA-1:cds;Parent=Msa0102320-mRNA-1
chr1_3 CDS 9066778 9066895 9066778 ID=Msa0102320-mRNA-1:cds;Parent=Msa0102320-mRNA-1
chr1_3 CDS 9066509 9066528 9066509 ID=Msa0102320-mRNA-1:cds;Parent=Msa0102320-mRNA-1
chr1_3 CDS 9065950 9066081 9065950 ID=Msa0102320-mRNA-1:cds;Parent=Msa0102320-mRNA-1
chr1_3 CDS 9065704 9065841 9065704 ID=Msa0102320-mRNA-1:cds;Parent=Msa0102320-mRNA-1
chr1_3 CDS 9065524 9065629 9065524 ID=Msa0102320-mRNA-1:cds;Parent=Msa0102320-mRNA-1
chr1_3 CDS 9065341 9065429 9065341 ID=Msa0102320-mRNA-1:cds;Parent=Msa0102320-mRNA-1
chr1_3 CDS 9064933 9064989 9064933 ID=Msa0102320-mRNA-1:cds;Parent=Msa0102320-mRNA-1
chr1_3 three_prime_UTR 9064799 9064932 9064799 ID=Msa0102320-mRNA-1:three_prime_utr;Parent=Msa0102320-mRNA-1
chr1_3 three_prime_UTR 9064710 9064738 9064710 ID=Msa0102320-mRNA-1:three_prime_utr;Parent=Msa0102320-mRNA-1
Gene Sequence

>Msa0102320

ATGAAATCATTTACTGATCTGGGCTTATCTTCTGAATTGGCAAAAATTTGTGAAACAAAAAGGCCTTGGTATTTTGCGCAGAGAGAAGTTTCAGAGAGAAGAAACGATGATGTGTTTGGAATTTCCCCACCACGTTCCGGTAAGACTGTGGCTTTTGTTCTTCCTATATTGCAGACCCTCCTCGAAACCGGACCCAACCTAACCCCTTTCTTTGCTTGTGTGCTCTATTCCACAAGGAGACTTGCCTTTCAGACCGCTGACCACTTTGAGGCTCTAGGTTCTCAATTTGGTGGTGTCAAGTGTGCTATTATTGCTGAAGAGAACCGCAAGGAACATGAATCCATCCTCAACTCAGAGCAACCTCATATTATTGTTGGGAGGCCTGACCTAATCTTATATCACCTAACACACACCCAAGGATTTTCTCTTGCTCTTGCTAGTTTAAAGTACTTGATAGATGATGCACACCTGCTATCTTATGAGAACATTCTACATCAGATTTTAGAGATTTCAAGAATGATTCCTAGTGAGCAGGAGAACATTTCTTTTTTCATCTACATTCACAGACGAGGTCCATACAATGCTAAGCATGATTGTTACCTTGTATACACTCTCGCTGAAATGAGTGGAAGAAAATATATGGTATACACTCAGCAATGTGGTACAGAGCTTCTTCTGGCTTTGATTCTTAAGAATCTTGGTTTCAGGCAATCCCTATTATTAGCAAAGAAACTTGGATCCTTGAATGTGTTCAAGTCTGGGGAGTGCAATATTCTCATTTGTAGTGACTTTGTTAGTAAGGGACTAGATATTCCAGCGGTAGATATGGTGATTAACTACGACATTCCTTGGTATCCAAACGATTATATCTACCGCGTGGGATGGACTGTTGCTCATGTTAATGTTGCTGTTTCCTTTGTGAGCCCAGATGAAAGGAGACATTTCAATATGATAGAGAAGCTTCTAGGCAAGAAGCTACCATTGTATCCTGCACCATTTGAGGAAGTTTTGCTTTTGGAAGGGCGTGTTAGTGAGGCTGAAAGATTAGCACAAGAGGAAATGAAAGAATTCGGTTGGAGGAGCGGTGGATACTTAGAGGAGGAGGTAAGCTAG

Protein sequence

>Msa0102320

MKSFTDLGLSSELAKICETKRPWYFAQREVSERRNDDVFGISPPRSGKTVAFVLPILQTLLETGPNLTPFFACVLYSTRRLAFQTADHFEALGSQFGGVKCAIIAEENRKEHESILNSEQPHIIVGRPDLILYHLTHTQGFSLALASLKYLIDDAHLLSYENILHQILEISRMIPSEQENISFFIYIHRRGPYNAKHDCYLVYTLAEMSGRKYMVYTQQCGTELLLALILKNLGFRQSLLLAKKLGSLNVFKSGECNILICSDFVSKGLDIPAVDMVINYDIPWYPNDYIYRVGWTVAHVNVAVSFVSPDERRHFNMIEKLLGKKLPLYPAPFEEVLLLEGRVSEAERLAQEEMKEFGWRSGGYLEEEVS*