Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148090 | G7I917 | 95.062 | 81 | 4 | 0 | 1 | 81 | 1 | 81 | 3.71e-46 | 154 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0053780 | Msa0148090 | 0.800767 | 1.235011e-48 | -8.615850e-47 |
| Msa0053800 | Msa0148090 | 0.800118 | 1.674613e-48 | -8.615850e-47 |
| Msa0148090 | Msa0148100 | 0.839429 | 1.593362e-57 | -8.615850e-47 |
| Msa0148090 | Msa0311700 | 0.803538 | 3.323458e-49 | -8.615850e-47 |
| Msa0148090 | Msa0346430 | 0.802163 | 6.392603e-49 | -8.615850e-47 |
| Msa0148090 | Msa0391690 | 0.803837 | 2.881475e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148090 | MtrunA17_Chr1g0150981 | 95.062 | 81 | 4 | 0 | 1 | 81 | 1 | 81 | 7.14e-50 | 154 |
| Msa0148090 | MtrunA17_Chr1g0151011 | 93.827 | 81 | 5 | 0 | 1 | 81 | 1 | 81 | 2.80e-48 | 150 |
| Msa0148090 | MtrunA17_Chr3g0136311 | 59.036 | 83 | 33 | 1 | 1 | 82 | 1 | 83 | 8.35e-21 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCAATTAGTGTTACTTTA+TGG | 0.143171 | 1_4:-8326644 | Msa0148090:CDS |
| AACAAGAAATAAATCATTAA+TGG | 0.260027 | 1_4:-8325104 | Msa0148090:three_prime_UTR |
| TTTACCCTCCTATTTGCTTC+AGG | 0.281136 | 1_4:+8326777 | None:intergenic |
| AACCATAAAGTAACACTAAT+TGG | 0.291426 | 1_4:+8326642 | None:intergenic |
| ACTTCCGGTAGTTATGTATA+CGG | 0.370187 | 1_4:+8325211 | None:intergenic |
| AGCTAGAACTACTAAGCTTA+TGG | 0.396738 | 1_4:+8326725 | None:intergenic |
| GAATGGAACCTGAAGCAAAT+AGG | 0.404269 | 1_4:-8326785 | Msa0148090:CDS |
| GAAAGAGAGAATCTGCTGAT+AGG | 0.428557 | 1_4:+8325042 | None:intergenic |
| AAGTTGCGTTCCGGTGCTCT+TGG | 0.448354 | 1_4:-8325137 | Msa0148090:CDS |
| TTAATGGCAAATTAAAAGAA+TGG | 0.448926 | 1_4:-8325088 | Msa0148090:three_prime_UTR |
| AATACTCAGAAGTTGCGTTC+CGG | 0.456712 | 1_4:-8325146 | Msa0148090:CDS |
| GAGTATCTGAAAGCAACTTC+CGG | 0.463106 | 1_4:+8325196 | None:intergenic |
| TCAGAAGTTACATTCGGAAA+TGG | 0.473337 | 1_4:-8325175 | Msa0148090:CDS |
| AGATACTCAGAAGTTACATT+CGG | 0.480833 | 1_4:-8325181 | Msa0148090:CDS |
| TGGCAAATTAAAAGAATGGT+TGG | 0.485759 | 1_4:-8325084 | Msa0148090:three_prime_UTR |
| GATCTGTTATCTATGTATAG+AGG | 0.518663 | 1_4:+8326693 | None:intergenic |
| TAACAGATCAGAGAGTGAGT+TGG | 0.526376 | 1_4:-8326679 | Msa0148090:CDS |
| TTTGAAATTCTGTGATGTCT+GGG | 0.528753 | 1_4:+8325239 | None:intergenic |
| CAAATTAAAAGAATGGTTGG+TGG | 0.568561 | 1_4:-8325081 | Msa0148090:three_prime_UTR |
| CTTCCGGTAGTTATGTATAC+GGG | 0.576015 | 1_4:+8325212 | None:intergenic |
| TTTATAACTTCCAAGAGCAC+CGG | 0.585739 | 1_4:+8325127 | None:intergenic |
| TGGAACCTGAAGCAAATAGG+AGG | 0.590316 | 1_4:-8326782 | Msa0148090:CDS |
| TGAAGCAGAAGAACTGAGGA+TGG | 0.595626 | 1_4:+8325004 | None:intergenic |
| ATACCCGTATACATAACTAC+CGG | 0.634495 | 1_4:-8325215 | Msa0148090:CDS |
| AAGCTTAGTAGTTCTAGCTG+TGG | 0.638140 | 1_4:-8326721 | Msa0148090:CDS |
| GGAACCTGAAGCAAATAGGA+GGG | 0.643854 | 1_4:-8326781 | Msa0148090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAAACTTAATTTAAAG+TGG | + | chr1_4:8326083-8326102 | None:intergenic | 10.0% |
| !! | TAAATTAAGTTTAAATATGA+AGG | - | chr1_4:8326086-8326105 | Msa0148090:intron | 10.0% |
| !! | TATTTAAACTTAATTTAAAG+TGG | + | chr1_4:8326083-8326102 | None:intergenic | 10.0% |
| !! | TAAATTAAGTTTAAATATGA+AGG | - | chr1_4:8326086-8326105 | Msa0148090:intron | 10.0% |
| !!! | TAATAAACTTCATATTTTCA+TGG | - | chr1_4:8325590-8325609 | Msa0148090:intron | 15.0% |
| !!! | GTAATACATTAAACTAATTT+TGG | + | chr1_4:8325671-8325690 | None:intergenic | 15.0% |
| !! | ATATCAAAAGAATGATTAAA+AGG | + | chr1_4:8325734-8325753 | None:intergenic | 15.0% |
| !! | CTTCCATTAAAAAATATTTA+AGG | - | chr1_4:8326505-8326524 | Msa0148090:intron | 15.0% |
| !! | CATAAACAACATATAATAAA+CGG | + | chr1_4:8326532-8326551 | None:intergenic | 15.0% |
| !!! | TTATTATATGTTGTTTATGT+AGG | - | chr1_4:8326533-8326552 | Msa0148090:intron | 15.0% |
| !! | AACAAGAAATAAATCATTAA+TGG | - | chr1_4:8326696-8326715 | Msa0148090:CDS | 15.0% |
| !!! | TAATAAACTTCATATTTTCA+TGG | - | chr1_4:8325590-8325609 | Msa0148090:intron | 15.0% |
| !!! | GTAATACATTAAACTAATTT+TGG | + | chr1_4:8325671-8325690 | None:intergenic | 15.0% |
| !! | ATATCAAAAGAATGATTAAA+AGG | + | chr1_4:8325734-8325753 | None:intergenic | 15.0% |
| !! | CTTCCATTAAAAAATATTTA+AGG | - | chr1_4:8326505-8326524 | Msa0148090:intron | 15.0% |
| !! | CATAAACAACATATAATAAA+CGG | + | chr1_4:8326532-8326551 | None:intergenic | 15.0% |
| !!! | TTATTATATGTTGTTTATGT+AGG | - | chr1_4:8326533-8326552 | Msa0148090:intron | 15.0% |
| !! | AACAAGAAATAAATCATTAA+TGG | - | chr1_4:8326696-8326715 | Msa0148090:CDS | 15.0% |
| !!! | ACGTGTAATTTTTTAAATTC+TGG | + | chr1_4:8325889-8325908 | None:intergenic | 20.0% |
| !!! | TAATTTCTTTTAGCCAAATT+TGG | + | chr1_4:8326027-8326046 | None:intergenic | 20.0% |
| !! | ACAAAATCAATAAGCAAATT+TGG | - | chr1_4:8326138-8326157 | Msa0148090:intron | 20.0% |
| !! | CAAAATCAATAAGCAAATTT+GGG | - | chr1_4:8326139-8326158 | Msa0148090:intron | 20.0% |
| !! | CCATAAACTAGAAAAATATA+CGG | - | chr1_4:8326208-8326227 | Msa0148090:intron | 20.0% |
| !! | TTCTATTTGAAAGTAATTGA+GGG | + | chr1_4:8326462-8326481 | None:intergenic | 20.0% |
| !! | TTTCTATTTGAAAGTAATTG+AGG | + | chr1_4:8326463-8326482 | None:intergenic | 20.0% |
| !!! | GGTCCTTAAATATTTTTTAA+TGG | + | chr1_4:8326511-8326530 | None:intergenic | 20.0% |
| !! | TTAATGGCAAATTAAAAGAA+TGG | - | chr1_4:8326712-8326731 | Msa0148090:CDS | 20.0% |
| !!! | ACGTGTAATTTTTTAAATTC+TGG | + | chr1_4:8325889-8325908 | None:intergenic | 20.0% |
| !!! | TAATTTCTTTTAGCCAAATT+TGG | + | chr1_4:8326027-8326046 | None:intergenic | 20.0% |
| !! | ACAAAATCAATAAGCAAATT+TGG | - | chr1_4:8326138-8326157 | Msa0148090:intron | 20.0% |
| !! | CAAAATCAATAAGCAAATTT+GGG | - | chr1_4:8326139-8326158 | Msa0148090:intron | 20.0% |
| !! | CCATAAACTAGAAAAATATA+CGG | - | chr1_4:8326208-8326227 | Msa0148090:intron | 20.0% |
| !! | TTCTATTTGAAAGTAATTGA+GGG | + | chr1_4:8326462-8326481 | None:intergenic | 20.0% |
| !! | TTTCTATTTGAAAGTAATTG+AGG | + | chr1_4:8326463-8326482 | None:intergenic | 20.0% |
| !!! | GGTCCTTAAATATTTTTTAA+TGG | + | chr1_4:8326511-8326530 | None:intergenic | 20.0% |
| !! | TTAATGGCAAATTAAAAGAA+TGG | - | chr1_4:8326712-8326731 | Msa0148090:CDS | 20.0% |
| !!! | AACCAATTAGTGTTACTTTA+TGG | - | chr1_4:8325156-8325175 | Msa0148090:CDS | 25.0% |
| ! | AACCATAAAGTAACACTAAT+TGG | + | chr1_4:8325161-8325180 | None:intergenic | 25.0% |
| !!! | CATATCTTTATCAGCTTTTT+TGG | - | chr1_4:8325211-8325230 | Msa0148090:CDS | 25.0% |
| !!! | CAAGTATTTTCTTTTGTTGT+AGG | + | chr1_4:8325831-8325850 | None:intergenic | 25.0% |
| ! | CTACAACAAAAGAAAATACT+TGG | - | chr1_4:8325829-8325848 | Msa0148090:intron | 25.0% |
| !!! | TTTGGTTTTGAATAAAGACT+TGG | + | chr1_4:8325960-8325979 | None:intergenic | 25.0% |
| !! | TTAATTTAAAGTGGATGCAT+TGG | + | chr1_4:8326074-8326093 | None:intergenic | 25.0% |
| !!! | CCGTATATTTTTCTAGTTTA+TGG | + | chr1_4:8326211-8326230 | None:intergenic | 25.0% |
| ! | AAAAATATACGGCCAATAAA+TGG | - | chr1_4:8326219-8326238 | Msa0148090:intron | 25.0% |
| !!! | AACCAATTAGTGTTACTTTA+TGG | - | chr1_4:8325156-8325175 | Msa0148090:CDS | 25.0% |
| ! | AACCATAAAGTAACACTAAT+TGG | + | chr1_4:8325161-8325180 | None:intergenic | 25.0% |
| !!! | CATATCTTTATCAGCTTTTT+TGG | - | chr1_4:8325211-8325230 | Msa0148090:CDS | 25.0% |
| !!! | CAAGTATTTTCTTTTGTTGT+AGG | + | chr1_4:8325831-8325850 | None:intergenic | 25.0% |
| ! | CTACAACAAAAGAAAATACT+TGG | - | chr1_4:8325829-8325848 | Msa0148090:intron | 25.0% |
| !!! | TTTGGTTTTGAATAAAGACT+TGG | + | chr1_4:8325960-8325979 | None:intergenic | 25.0% |
| !! | TTAATTTAAAGTGGATGCAT+TGG | + | chr1_4:8326074-8326093 | None:intergenic | 25.0% |
| !!! | CCGTATATTTTTCTAGTTTA+TGG | + | chr1_4:8326211-8326230 | None:intergenic | 25.0% |
| ! | AAAAATATACGGCCAATAAA+TGG | - | chr1_4:8326219-8326238 | Msa0148090:intron | 25.0% |
| GATCTGTTATCTATGTATAG+AGG | + | chr1_4:8325110-8325129 | None:intergenic | 30.0% | |
| CACAAGTGTACAAAATATAG+AGG | + | chr1_4:8325454-8325473 | None:intergenic | 30.0% | |
| ! | TCTAAGATCATACACACATA+TGG | - | chr1_4:8325753-8325772 | Msa0148090:intron | 30.0% |
| TGGCATTACATTTGTAAACA+AGG | - | chr1_4:8325773-8325792 | Msa0148090:intron | 30.0% | |
| TGTAAACAAGGTAAACACTA+AGG | - | chr1_4:8325785-8325804 | Msa0148090:intron | 30.0% | |
| !! | TTCTAGTTTATGGCCTAAAT+GGG | + | chr1_4:8326201-8326220 | None:intergenic | 30.0% |
| !! | TTTCTAGTTTATGGCCTAAA+TGG | + | chr1_4:8326202-8326221 | None:intergenic | 30.0% |
| ! | TTTGAAATTCTGTGATGTCT+GGG | + | chr1_4:8326564-8326583 | None:intergenic | 30.0% |
| !!! | TTTTGAAATTCTGTGATGTC+TGG | + | chr1_4:8326565-8326584 | None:intergenic | 30.0% |
| AGATACTCAGAAGTTACATT+CGG | - | chr1_4:8326619-8326638 | Msa0148090:CDS | 30.0% | |
| TGGCAAATTAAAAGAATGGT+TGG | - | chr1_4:8326716-8326735 | Msa0148090:CDS | 30.0% | |
| CAAATTAAAAGAATGGTTGG+TGG | - | chr1_4:8326719-8326738 | Msa0148090:CDS | 30.0% | |
| GATCTGTTATCTATGTATAG+AGG | + | chr1_4:8325110-8325129 | None:intergenic | 30.0% | |
| CACAAGTGTACAAAATATAG+AGG | + | chr1_4:8325454-8325473 | None:intergenic | 30.0% | |
| ! | TCTAAGATCATACACACATA+TGG | - | chr1_4:8325753-8325772 | Msa0148090:intron | 30.0% |
| TGGCATTACATTTGTAAACA+AGG | - | chr1_4:8325773-8325792 | Msa0148090:intron | 30.0% | |
| TGTAAACAAGGTAAACACTA+AGG | - | chr1_4:8325785-8325804 | Msa0148090:intron | 30.0% | |
| !! | TTCTAGTTTATGGCCTAAAT+GGG | + | chr1_4:8326201-8326220 | None:intergenic | 30.0% |
| !! | TTTCTAGTTTATGGCCTAAA+TGG | + | chr1_4:8326202-8326221 | None:intergenic | 30.0% |
| ! | TTTGAAATTCTGTGATGTCT+GGG | + | chr1_4:8326564-8326583 | None:intergenic | 30.0% |
| !!! | TTTTGAAATTCTGTGATGTC+TGG | + | chr1_4:8326565-8326584 | None:intergenic | 30.0% |
| AGATACTCAGAAGTTACATT+CGG | - | chr1_4:8326619-8326638 | Msa0148090:CDS | 30.0% | |
| TGGCAAATTAAAAGAATGGT+TGG | - | chr1_4:8326716-8326735 | Msa0148090:CDS | 30.0% | |
| CAAATTAAAAGAATGGTTGG+TGG | - | chr1_4:8326719-8326738 | Msa0148090:CDS | 30.0% | |
| AGCTAGAACTACTAAGCTTA+TGG | + | chr1_4:8325078-8325097 | None:intergenic | 35.0% | |
| !!! | ACCTATGCTGCTTTTTGTAT+TGG | - | chr1_4:8325181-8325200 | Msa0148090:CDS | 35.0% |
| ACCAATACAAAAAGCAGCAT+AGG | + | chr1_4:8325185-8325204 | None:intergenic | 35.0% | |
| ! | TTTTGGATAAGAGCTTCACA+AGG | - | chr1_4:8325228-8325247 | Msa0148090:CDS | 35.0% |
| TCACAAGGTTTGATCGTAAT+TGG | - | chr1_4:8325243-8325262 | Msa0148090:CDS | 35.0% | |
| CGTAATTGGATTCATAGAGT+TGG | - | chr1_4:8325257-8325276 | Msa0148090:intron | 35.0% | |
| AATTGGATTCATAGAGTTGG+TGG | - | chr1_4:8325260-8325279 | Msa0148090:intron | 35.0% | |
| !! | ATTTTCTTTTGTTGTAGGCG+TGG | + | chr1_4:8325826-8325845 | None:intergenic | 35.0% |
| ! | TGCTACTACTTTCTGAGTTT+TGG | + | chr1_4:8325978-8325997 | None:intergenic | 35.0% |
| ACTGCAGAAAGAACCAAATT+TGG | - | chr1_4:8326011-8326030 | Msa0148090:intron | 35.0% | |
| ! | ATTTTGCTAGACTGCAACTT+CGG | - | chr1_4:8326114-8326133 | Msa0148090:intron | 35.0% |
| GGGAGAGAAACAATTGTTTA+GGG | + | chr1_4:8326181-8326200 | None:intergenic | 35.0% | |
| TGGGAGAGAAACAATTGTTT+AGG | + | chr1_4:8326182-8326201 | None:intergenic | 35.0% | |
| ! | CAATTGTTTCTCTCCCATTT+AGG | - | chr1_4:8326185-8326204 | Msa0148090:intron | 35.0% |
| ATACCCGTATACATAACTAC+CGG | - | chr1_4:8326585-8326604 | Msa0148090:CDS | 35.0% | |
| ACTTCCGGTAGTTATGTATA+CGG | + | chr1_4:8326592-8326611 | None:intergenic | 35.0% | |
| TCAGAAGTTACATTCGGAAA+TGG | - | chr1_4:8326625-8326644 | Msa0148090:CDS | 35.0% | |
| ! | TTTATAACTTCCAAGAGCAC+CGG | + | chr1_4:8326676-8326695 | None:intergenic | 35.0% |
| AGCTAGAACTACTAAGCTTA+TGG | + | chr1_4:8325078-8325097 | None:intergenic | 35.0% | |
| !!! | ACCTATGCTGCTTTTTGTAT+TGG | - | chr1_4:8325181-8325200 | Msa0148090:CDS | 35.0% |
| ACCAATACAAAAAGCAGCAT+AGG | + | chr1_4:8325185-8325204 | None:intergenic | 35.0% | |
| ! | TTTTGGATAAGAGCTTCACA+AGG | - | chr1_4:8325228-8325247 | Msa0148090:CDS | 35.0% |
| TCACAAGGTTTGATCGTAAT+TGG | - | chr1_4:8325243-8325262 | Msa0148090:CDS | 35.0% | |
| CGTAATTGGATTCATAGAGT+TGG | - | chr1_4:8325257-8325276 | Msa0148090:intron | 35.0% | |
| AATTGGATTCATAGAGTTGG+TGG | - | chr1_4:8325260-8325279 | Msa0148090:intron | 35.0% | |
| !! | ATTTTCTTTTGTTGTAGGCG+TGG | + | chr1_4:8325826-8325845 | None:intergenic | 35.0% |
| ! | TGCTACTACTTTCTGAGTTT+TGG | + | chr1_4:8325978-8325997 | None:intergenic | 35.0% |
| ACTGCAGAAAGAACCAAATT+TGG | - | chr1_4:8326011-8326030 | Msa0148090:intron | 35.0% | |
| ! | ATTTTGCTAGACTGCAACTT+CGG | - | chr1_4:8326114-8326133 | Msa0148090:intron | 35.0% |
| GGGAGAGAAACAATTGTTTA+GGG | + | chr1_4:8326181-8326200 | None:intergenic | 35.0% | |
| TGGGAGAGAAACAATTGTTT+AGG | + | chr1_4:8326182-8326201 | None:intergenic | 35.0% | |
| ! | CAATTGTTTCTCTCCCATTT+AGG | - | chr1_4:8326185-8326204 | Msa0148090:intron | 35.0% |
| ATACCCGTATACATAACTAC+CGG | - | chr1_4:8326585-8326604 | Msa0148090:CDS | 35.0% | |
| ACTTCCGGTAGTTATGTATA+CGG | + | chr1_4:8326592-8326611 | None:intergenic | 35.0% | |
| TCAGAAGTTACATTCGGAAA+TGG | - | chr1_4:8326625-8326644 | Msa0148090:CDS | 35.0% | |
| ! | TTTATAACTTCCAAGAGCAC+CGG | + | chr1_4:8326676-8326695 | None:intergenic | 35.0% |
| TTTACCCTCCTATTTGCTTC+AGG | + | chr1_4:8325026-8325045 | None:intergenic | 40.0% | |
| !! | AAGCTTAGTAGTTCTAGCTG+TGG | - | chr1_4:8325079-8325098 | Msa0148090:three_prime_UTR | 40.0% |
| TAACAGATCAGAGAGTGAGT+TGG | - | chr1_4:8325121-8325140 | Msa0148090:exon | 40.0% | |
| ! | TTTTGCTAGACTGCAACTTC+GGG | - | chr1_4:8326115-8326134 | Msa0148090:intron | 40.0% |
| CCACGAACTTGACCATTTAT+TGG | + | chr1_4:8326234-8326253 | None:intergenic | 40.0% | |
| CCAATAAATGGTCAAGTTCG+TGG | - | chr1_4:8326231-8326250 | Msa0148090:intron | 40.0% | |
| CTTCCGGTAGTTATGTATAC+GGG | + | chr1_4:8326591-8326610 | None:intergenic | 40.0% | |
| GAGTATCTGAAAGCAACTTC+CGG | + | chr1_4:8326607-8326626 | None:intergenic | 40.0% | |
| AATACTCAGAAGTTGCGTTC+CGG | - | chr1_4:8326654-8326673 | Msa0148090:CDS | 40.0% | |
| ! | TGCTGATAGGTTTTCTCTGA+GGG | + | chr1_4:8326748-8326767 | None:intergenic | 40.0% |
| GAAAGAGAGAATCTGCTGAT+AGG | + | chr1_4:8326761-8326780 | None:intergenic | 40.0% | |
| TTTACCCTCCTATTTGCTTC+AGG | + | chr1_4:8325026-8325045 | None:intergenic | 40.0% | |
| !! | AAGCTTAGTAGTTCTAGCTG+TGG | - | chr1_4:8325079-8325098 | Msa0148090:three_prime_UTR | 40.0% |
| TAACAGATCAGAGAGTGAGT+TGG | - | chr1_4:8325121-8325140 | Msa0148090:exon | 40.0% | |
| ! | TTTTGCTAGACTGCAACTTC+GGG | - | chr1_4:8326115-8326134 | Msa0148090:intron | 40.0% |
| CCACGAACTTGACCATTTAT+TGG | + | chr1_4:8326234-8326253 | None:intergenic | 40.0% | |
| CCAATAAATGGTCAAGTTCG+TGG | - | chr1_4:8326231-8326250 | Msa0148090:intron | 40.0% | |
| CTTCCGGTAGTTATGTATAC+GGG | + | chr1_4:8326591-8326610 | None:intergenic | 40.0% | |
| GAGTATCTGAAAGCAACTTC+CGG | + | chr1_4:8326607-8326626 | None:intergenic | 40.0% | |
| AATACTCAGAAGTTGCGTTC+CGG | - | chr1_4:8326654-8326673 | Msa0148090:CDS | 40.0% | |
| ! | TGCTGATAGGTTTTCTCTGA+GGG | + | chr1_4:8326748-8326767 | None:intergenic | 40.0% |
| GAAAGAGAGAATCTGCTGAT+AGG | + | chr1_4:8326761-8326780 | None:intergenic | 40.0% | |
| TGGAACCTGAAGCAAATAGG+AGG | - | chr1_4:8325018-8325037 | Msa0148090:three_prime_UTR | 45.0% | |
| GGAACCTGAAGCAAATAGGA+GGG | - | chr1_4:8325019-8325038 | Msa0148090:three_prime_UTR | 45.0% | |
| !! | CATAGAGTTGGTGGTTCTTC+TGG | - | chr1_4:8325269-8325288 | Msa0148090:intron | 45.0% |
| ! | CTGCTGATAGGTTTTCTCTG+AGG | + | chr1_4:8326749-8326768 | None:intergenic | 45.0% |
| TGGAACCTGAAGCAAATAGG+AGG | - | chr1_4:8325018-8325037 | Msa0148090:three_prime_UTR | 45.0% | |
| GGAACCTGAAGCAAATAGGA+GGG | - | chr1_4:8325019-8325038 | Msa0148090:three_prime_UTR | 45.0% | |
| !! | CATAGAGTTGGTGGTTCTTC+TGG | - | chr1_4:8325269-8325288 | Msa0148090:intron | 45.0% |
| ! | CTGCTGATAGGTTTTCTCTG+AGG | + | chr1_4:8326749-8326768 | None:intergenic | 45.0% |
| !!! | AAATTTATTTATTTTACTAT+TGG | + | chr1_4:8326360-8326379 | None:intergenic | 5.0% |
| !!! | AAATTTATTTATTTTACTAT+TGG | + | chr1_4:8326360-8326379 | None:intergenic | 5.0% |
| !! | AGAGTTGGTGGTTCTTCTGG+TGG | - | chr1_4:8325272-8325291 | Msa0148090:intron | 50.0% |
| CTTGAGCATGCATGCATGCA+AGG | + | chr1_4:8325364-8325383 | None:intergenic | 50.0% | |
| CTTGCATGCATGCATGCTCA+AGG | - | chr1_4:8325362-8325381 | Msa0148090:intron | 50.0% | |
| !! | AGAGTTGGTGGTTCTTCTGG+TGG | - | chr1_4:8325272-8325291 | Msa0148090:intron | 50.0% |
| CTTGAGCATGCATGCATGCA+AGG | + | chr1_4:8325364-8325383 | None:intergenic | 50.0% | |
| CTTGCATGCATGCATGCTCA+AGG | - | chr1_4:8325362-8325381 | Msa0148090:intron | 50.0% | |
| AAGTTGCGTTCCGGTGCTCT+TGG | - | chr1_4:8326663-8326682 | Msa0148090:CDS | 55.0% | |
| AAGTTGCGTTCCGGTGCTCT+TGG | - | chr1_4:8326663-8326682 | Msa0148090:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 8325017 | 8326805 | 8325017 | ID=Msa0148090;Name=Msa0148090 |
| chr1_4 | mRNA | 8325017 | 8326805 | 8325017 | ID=Msa0148090-mRNA-1;Parent=Msa0148090;Name=Msa0148090-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0.5|1|0|0|2|111|126 |
| chr1_4 | exon | 8325017 | 8325267 | 8325017 | ID=Msa0148090-mRNA-1:exon:3607;Parent=Msa0148090-mRNA-1 |
| chr1_4 | exon | 8326565 | 8326805 | 8326565 | ID=Msa0148090-mRNA-1:exon:3606;Parent=Msa0148090-mRNA-1 |
| chr1_4 | CDS | 8326565 | 8326805 | 8326565 | ID=Msa0148090-mRNA-1:cds;Parent=Msa0148090-mRNA-1 |
| chr1_4 | CDS | 8325128 | 8325267 | 8325128 | ID=Msa0148090-mRNA-1:cds;Parent=Msa0148090-mRNA-1 |
| chr1_4 | three_prime_UTR | 8325017 | 8325127 | 8325017 | ID=Msa0148090-mRNA-1:three_prime_utr;Parent=Msa0148090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
