AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0311700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0311700 MtrunA17_Chr2g0280891 99.329 298 2 0 1 298 1 298 0.0 610
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0311700 AT1G28120.1 73.188 276 68 2 23 298 26 295 1.86e-152 429

Find 92 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAGTCAGTTTCAGATTA+TGG 0.229342 2_4:-6595711 Msa0311700:intron
ATATTGCTTTCATGTTTAAA+TGG 0.238882 2_4:-6594687 Msa0311700:three_prime_UTR
CATTCTCTAGGAGCATATTT+TGG 0.239215 2_4:-6597093 Msa0311700:intron
ACCCACAAACGGAAATTTCT+TGG 0.270680 2_4:+6600182 None:intergenic
AATAACAAAGCAACATAAAA+TGG 0.275010 2_4:+6594874 None:intergenic
AAATTACCCCACGCAGATTC+TGG 0.280776 2_4:+6600255 None:intergenic
GCGGAATAAAGAACCGGTTT+TGG 0.300708 2_4:-6600307 Msa0311700:CDS
CATGATTTCACGCCGGTTGC+TGG 0.325738 2_4:-6595191 Msa0311700:CDS
CCTTTAATGCAGGTGCTTGA+TGG 0.327016 2_4:-6597417 Msa0311700:intron
ATCAGGCAGTCCTATATTAC+TGG 0.332456 2_4:-6597551 Msa0311700:CDS
TTTCCTAACATCTTTGCATT+TGG 0.342999 2_4:-6594828 Msa0311700:three_prime_UTR
TATGTTGCTTTGTTATTTGT+TGG 0.343434 2_4:-6594868 Msa0311700:three_prime_UTR
CCAAAGTGAGGATGATCTAT+TGG 0.358729 2_4:-6595080 Msa0311700:exon
GCAGCAGCAATCTTCTATTC+AGG 0.365842 2_4:-6600214 Msa0311700:CDS
ACTCCAAATGCAAAGATGTT+AGG 0.390523 2_4:+6594825 None:intergenic
AACCTGCTCAACTGTTGTAT+TGG 0.402598 2_4:+6595527 None:intergenic
GAAATTTGAATTGGTTTAAG+TGG 0.409110 2_4:-6600336 Msa0311700:five_prime_UTR
GCCAAGAAATTTCCGTTTGT+GGG 0.422209 2_4:-6600183 Msa0311700:CDS
CAGAATCTACGCAGGCTACA+AGG 0.425006 2_4:+6594776 None:intergenic
ATTTCCGTTTGTGGGTGATA+AGG 0.426081 2_4:-6600175 Msa0311700:intron
GTTTAAATGGACGAAATTGT+TGG 0.428156 2_4:-6594674 Msa0311700:three_prime_UTR
TACCGCCCTTTCAGATGCAT+TGG 0.433997 2_4:-6595282 Msa0311700:CDS
TTTAAATGGACGAAATTGTT+GGG 0.436179 2_4:-6594673 Msa0311700:three_prime_UTR
TCAGTTATTCCTTGAGCAGC+TGG 0.445312 2_4:-6595945 Msa0311700:intron
ATCATCCTCACTTTGGATAG+AGG 0.448191 2_4:+6595087 None:intergenic
ATTCAGCTCCACACTGAGCT+TGG 0.450711 2_4:-6595035 Msa0311700:three_prime_UTR
AGCCAAGAAATTTCCGTTTG+TGG 0.451303 2_4:-6600184 Msa0311700:CDS
GATGGAAACTGCTTCTTTCG+AGG 0.453514 2_4:-6597363 Msa0311700:CDS
GACCGTAGCTCATGTGATAC+TGG 0.458447 2_4:-6595233 Msa0311700:CDS
CTTTAATGCAGGTGCTTGAT+GGG 0.460949 2_4:-6597416 Msa0311700:intron
ACCGCCCTTTCAGATGCATT+GGG 0.465250 2_4:-6595281 Msa0311700:CDS
TAGAAAAGCACTTCAGACCT+TGG 0.469580 2_4:-6597018 Msa0311700:CDS
CCAATAGATCATCCTCACTT+TGG 0.471036 2_4:+6595080 None:intergenic
AGAAAAGCACTTCAGACCTT+GGG 0.475463 2_4:-6597017 Msa0311700:CDS
ACGATATAGTAATGTGATGA+AGG 0.477093 2_4:+6595127 None:intergenic
TATATTACTGGAGAAAATCA+AGG 0.477418 2_4:-6597539 Msa0311700:intron
TCAAGATACACAACACGGAT+TGG 0.481206 2_4:+6595254 None:intergenic
CTTGGGAGATCACCAGCAAC+CGG 0.484670 2_4:+6595179 None:intergenic
CAAATCAGCTGTTGAGCCAA+TGG 0.487126 2_4:-6595330 Msa0311700:CDS
GATTATTAATGCACTAATGT+CGG 0.487838 2_4:+6594905 None:intergenic
ACTGAGCTTGGTTGTTAATG+AGG 0.497760 2_4:-6595023 Msa0311700:three_prime_UTR
AACCAATACAACAGTTGAGC+AGG 0.497886 2_4:-6595529 Msa0311700:intron
TCAGAGCTACCACTAGCACT+TGG 0.502096 2_4:+6595161 None:intergenic
TTGGCTGCTGAATATCAATC+AGG 0.505721 2_4:-6597568 Msa0311700:CDS
AAATCAGCTGTTGAGCCAAT+GGG 0.508018 2_4:-6595329 Msa0311700:CDS
CAGCTGGAAGACGTTATTCA+AGG 0.512483 2_4:-6595929 Msa0311700:CDS
ATTCGGCGTACTCGTGGAGA+TGG 0.513061 2_4:-6597381 Msa0311700:CDS
ATGGGCAATATGCTGCCATT+CGG 0.513520 2_4:-6597398 Msa0311700:CDS
ACTTCCCCATCATCCAAAAC+CGG 0.521167 2_4:+6600294 None:intergenic
TAGTGAGTTCTGTGAGGGCA+TGG 0.523030 2_4:-6594802 Msa0311700:three_prime_UTR
TCAGCAGCCAAGCTAGATAG+TGG 0.526345 2_4:+6597580 None:intergenic
AGAATCTACGCAGGCTACAA+GGG 0.530193 2_4:+6594777 None:intergenic
TGGTCGCTCTCTTCTCCCAT+TGG 0.541430 2_4:+6595314 None:intergenic
TTGGTTAAGCCCATAATGAA+AGG 0.547596 2_4:+6595546 None:intergenic
TGATGGGGAAGTAGAGTATG+AGG 0.548779 2_4:-6600283 Msa0311700:CDS
GCAGGAACCACTATCTAGCT+TGG 0.550864 2_4:-6597587 Msa0311700:intron
GCTGCCATTCGGCGTACTCG+TGG 0.551041 2_4:-6597387 Msa0311700:CDS
AAGGGAAAGAGACGTCCATA+AGG 0.560633 2_4:-6595910 Msa0311700:intron
CTGAGCTTGGTTGTTAATGA+GGG 0.563049 2_4:-6595022 Msa0311700:three_prime_UTR
TAACGTCTTCCAGCTGCTCA+AGG 0.563282 2_4:+6595936 None:intergenic
CAGAGCTACCACTAGCACTT+GGG 0.563915 2_4:+6595162 None:intergenic
GGCTGGTCCAGAATCTGCGT+GGG 0.566158 2_4:-6600262 Msa0311700:CDS
GGTGATCTCCCAAGTGCTAG+TGG 0.566956 2_4:-6595170 Msa0311700:CDS
AATGCCCAATGCATCTGAAA+GGG 0.567632 2_4:+6595277 None:intergenic
GAATGCCCAATGCATCTGAA+AGG 0.571708 2_4:+6595276 None:intergenic
CTTACCTTATCACCCACAAA+CGG 0.573186 2_4:+6600171 None:intergenic
CGCCAGTATCACATGAGCTA+CGG 0.576967 2_4:+6595231 None:intergenic
GGAGTTAGTGAGTTCTGTGA+GGG 0.577772 2_4:-6594807 Msa0311700:three_prime_UTR
ATCACATTACTATATCGTCC+TGG 0.585998 2_4:-6595122 Msa0311700:CDS
CGATATAGTAATGTGATGAA+GGG 0.586075 2_4:+6595128 None:intergenic
AGCTGGAAGACGTTATTCAA+GGG 0.602756 2_4:-6595928 Msa0311700:CDS
GGGGAAGTAGAGTATGAGGC+TGG 0.604667 2_4:-6600279 Msa0311700:CDS
AGTCAATTCTGCATAACCCA+AGG 0.624232 2_4:+6597001 None:intergenic
ATCTCCACGAGTACGCCGAA+TGG 0.624749 2_4:+6597383 None:intergenic
GCCCAATGCATCTGAAAGGG+CGG 0.633230 2_4:+6595280 None:intergenic
TAGCTTGCGATTTCGATCGA+AGG 0.634318 2_4:-6600642 Msa0311700:intron
GATATCCTCTATCCAAAGTG+AGG 0.635051 2_4:-6595092 Msa0311700:exon
GAATCTACGCAGGCTACAAG+GGG 0.635740 2_4:+6594778 None:intergenic
AGGCTGGTCCAGAATCTGCG+TGG 0.639324 2_4:-6600263 Msa0311700:CDS
TCATTCTGCAGAATCTACGC+AGG 0.639329 2_4:+6594768 None:intergenic
AAAGGGCGGTAATGTGAACA+TGG 0.647398 2_4:+6595294 None:intergenic
ATTATATGATCACAGTCATG+AGG 0.653815 2_4:-6595754 Msa0311700:intron
TTGCTCTTCACTCTCTCACA+CGG 0.656347 2_4:-6600665 Msa0311700:five_prime_UTR
TGGAGTTAGTGAGTTCTGTG+AGG 0.663492 2_4:-6594808 Msa0311700:three_prime_UTR
TAGAGGATATCATAGTGACC+AGG 0.664906 2_4:+6595104 None:intergenic
ATTAACAACCAAGCTCAGTG+TGG 0.695543 2_4:+6595027 None:intergenic
AAATCATCATGATTTCACGC+CGG 0.709072 2_4:-6595198 Msa0311700:CDS
CGTAGCTCATGTGATACTGG+CGG 0.720657 2_4:-6595230 Msa0311700:CDS
GCTGGTCCAGAATCTGCGTG+GGG 0.726249 2_4:-6600261 Msa0311700:CDS
TACGGTCAAGATACACAACA+CGG 0.736056 2_4:+6595249 None:intergenic
AAATGCGCAGACATGCAATG+CGG 0.760409 2_4:+6594715 None:intergenic
AATCTACGCAGGCTACAAGG+GGG 0.769048 2_4:+6594779 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTATATAATTTTAAA+TGG - chr2_4:6600741-6600760 Msa0311700:five_prime_UTR 0.0%
!!! AAATATCTTTTGAATTTAAA+AGG + chr2_4:6596288-6596307 None:intergenic 10.0%
!!! AATTAATTAATCTAAAGTTA+TGG - chr2_4:6596451-6596470 Msa0311700:intron 10.0%
!!! ATTATTTCATTAATGTTTTT+TGG + chr2_4:6596959-6596978 None:intergenic 10.0%
!! AATTATAATATTCTTAAATG+AGG + chr2_4:6599352-6599371 None:intergenic 10.0%
!! AAAATTATTATTATCTTTGC+AGG - chr2_4:6594934-6594953 Msa0311700:three_prime_UTR 15.0%
!!! AATGTATGTTTTGTATTTTA+AGG - chr2_4:6595531-6595550 Msa0311700:CDS 15.0%
!!! TTATTATTCCATTAACTTTT+TGG - chr2_4:6595712-6595731 Msa0311700:CDS 15.0%
!! ATTATATACCAAAAAGTTAA+TGG + chr2_4:6595723-6595742 None:intergenic 15.0%
!!! TTTTATATGTGTATATCAAA+GGG + chr2_4:6596523-6596542 None:intergenic 15.0%
!! ATGTAACAATAAATCATTTA+AGG + chr2_4:6598078-6598097 None:intergenic 15.0%
!!! GAATTTTTTATAAGATTAGT+GGG + chr2_4:6598477-6598496 None:intergenic 15.0%
!!! AGAATTTTTTATAAGATTAG+TGG + chr2_4:6598478-6598497 None:intergenic 15.0%
!! AAAAAATCTATCGAGAATTT+AGG - chr2_4:6594635-6594654 Msa0311700:three_prime_UTR 20.0%
!! AAAAATCTATCGAGAATTTA+GGG - chr2_4:6594636-6594655 Msa0311700:three_prime_UTR 20.0%
!! AACAATTCAACAAAAATTGA+AGG + chr2_4:6594811-6594830 None:intergenic 20.0%
!!! TTCAAATTTCACTTTTTACT+TGG + chr2_4:6594992-6595011 None:intergenic 20.0%
!! GTAAAAAGTGAAATTTGAAT+TGG - chr2_4:6594993-6595012 Msa0311700:three_prime_UTR 20.0%
!! TTTGATGAAAAAACTATTTG+AGG - chr2_4:6595265-6595284 Msa0311700:CDS 20.0%
!! CAAAACATACATTTAATAGA+AGG + chr2_4:6595524-6595543 None:intergenic 20.0%
!!! TAGGTAATCAACATATTTTT+AGG - chr2_4:6596158-6596177 Msa0311700:intron 20.0%
!!! GTACCTTTTGTATTTAATAT+GGG + chr2_4:6596266-6596285 None:intergenic 20.0%
!!! TTTTCTATTCTAATACTTAC+AGG - chr2_4:6596305-6596324 Msa0311700:intron 20.0%
!!! GTTTTATATGTGTATATCAA+AGG + chr2_4:6596524-6596543 None:intergenic 20.0%
!! TTTAATGTCAATATTGAACT+GGG - chr2_4:6596625-6596644 Msa0311700:intron 20.0%
!! GTCTTTATCAACATTTAATT+TGG - chr2_4:6596990-6597009 Msa0311700:CDS 20.0%
!! TGATTGTACATACATAAATT+AGG + chr2_4:6597389-6597408 None:intergenic 20.0%
!! ATTTATTTGAAGAGAGAAAA+AGG - chr2_4:6597447-6597466 Msa0311700:intron 20.0%
!! TTTATTTGAAGAGAGAAAAA+GGG - chr2_4:6597448-6597467 Msa0311700:intron 20.0%
!!! CAGAATTTGTTAAACTAAAA+TGG - chr2_4:6597607-6597626 Msa0311700:intron 20.0%
!! ATTCAAGAAACATGAAAATA+TGG + chr2_4:6597888-6597907 None:intergenic 20.0%
!! ACATAACAATAAAACATACA+AGG + chr2_4:6598016-6598035 None:intergenic 20.0%
!!! AATTTATGGACTGAAATTAT+TGG + chr2_4:6598215-6598234 None:intergenic 20.0%
!! AATGAGATAGAGTTAATTTA+TGG + chr2_4:6598229-6598248 None:intergenic 20.0%
!!! GACTTTTGAAGATTTTTTTA+CGG - chr2_4:6598356-6598375 Msa0311700:intron 20.0%
!! ATAAAAAATTCTCCAAACAT+AGG - chr2_4:6598486-6598505 Msa0311700:intron 20.0%
!!! TTAATAGTGGATTATCATTT+TGG - chr2_4:6598860-6598879 Msa0311700:intron 20.0%
!! CTACAGTAGTAAAAAAATTA+AGG - chr2_4:6598922-6598941 Msa0311700:intron 20.0%
!! TCATACAACAGAAAAAATAT+AGG - chr2_4:6599135-6599154 Msa0311700:intron 20.0%
!! TAACAAAGGTTTCTATTTAA+TGG - chr2_4:6599160-6599179 Msa0311700:intron 20.0%
!!! TTTTTAAAAATGCTGTGAAT+TGG - chr2_4:6599272-6599291 Msa0311700:intron 20.0%
!!! ATTTTTTGAACCTTTCATTA+TGG - chr2_4:6599782-6599801 Msa0311700:intron 20.0%
!!! TTTTTTGAACCTTTCATTAT+GGG - chr2_4:6599783-6599802 Msa0311700:intron 20.0%
!! AATAACAAAGCAACATAAAA+TGG + chr2_4:6600467-6600486 None:intergenic 20.0%
!! ATATTGCTTTCATGTTTAAA+TGG - chr2_4:6600651-6600670 Msa0311700:five_prime_UTR 20.0%
!! TTCAACGCAATTTTATGATT+CGG - chr2_4:6594899-6594918 Msa0311700:three_prime_UTR 25.0%
!! GAAATTTGAATTGGTTTAAG+TGG - chr2_4:6595002-6595021 Msa0311700:three_prime_UTR 25.0%
! CTTCATTATCTAGTCATTTA+GGG - chr2_4:6595224-6595243 Msa0311700:CDS 25.0%
!! AAGCTAATTCAAGTTACTTA+AGG + chr2_4:6595336-6595355 None:intergenic 25.0%
!!! TTTTAAGGTATACTTACAAG+TGG - chr2_4:6595546-6595565 Msa0311700:CDS 25.0%
! AATATTTAATGTGTGTGATC+CGG + chr2_4:6595655-6595674 None:intergenic 25.0%
!!! CATTAGGTTTTTGAGTAATT+GGG + chr2_4:6595950-6595969 None:intergenic 25.0%
! TTTGATGTCAATATTGAACT+AGG + chr2_4:6596057-6596076 None:intergenic 25.0%
!!! TCAACATATTTTTAGGAACA+CGG - chr2_4:6596165-6596184 Msa0311700:intron 25.0%
! CAACCCATATTAAATACAAA+AGG - chr2_4:6596260-6596279 Msa0311700:intron 25.0%
!! GGTACCTTTTGTATTTAATA+TGG + chr2_4:6596267-6596286 None:intergenic 25.0%
! ACAAAACCATCAAAAAGTAA+GGG + chr2_4:6596334-6596353 None:intergenic 25.0%
! AACAAAACCATCAAAAAGTA+AGG + chr2_4:6596335-6596354 None:intergenic 25.0%
!!! ACTTTTTGATGGTTTTGTTT+TGG - chr2_4:6596336-6596355 Msa0311700:intron 25.0%
!! AAACGTTAGTGATGTTTTAT+AGG - chr2_4:6596372-6596391 Msa0311700:intron 25.0%
!! TTTATAGGTTGAAAACTGAT+TGG - chr2_4:6596387-6596406 Msa0311700:intron 25.0%
!! TTATAGGTTGAAAACTGATT+GGG - chr2_4:6596388-6596407 Msa0311700:intron 25.0%
! TTCAATATTGACATTAAAGG+TGG + chr2_4:6596623-6596642 None:intergenic 25.0%
! CAGTTCAATATTGACATTAA+AGG + chr2_4:6596626-6596645 None:intergenic 25.0%
! CTTTAATGTCAATATTGAAC+TGG - chr2_4:6596624-6596643 Msa0311700:intron 25.0%
!!! TTTTAAGGTATACTTATACG+TGG + chr2_4:6597132-6597151 None:intergenic 25.0%
!! ATCAGGTGATTAGTATTTTA+AGG + chr2_4:6597147-6597166 None:intergenic 25.0%
! CATAAATAGATTTGGATTCT+TGG + chr2_4:6597198-6597217 None:intergenic 25.0%
! TACACGTACATAAATAGATT+TGG + chr2_4:6597206-6597225 None:intergenic 25.0%
! TGTACATACATAAATTAGGA+TGG + chr2_4:6597385-6597404 None:intergenic 25.0%
! ATCACAAAAAAACTAGACTT+TGG - chr2_4:6597409-6597428 Msa0311700:intron 25.0%
! TTATTTGAAGAGAGAAAAAG+GGG - chr2_4:6597449-6597468 Msa0311700:intron 25.0%
!!! TTTTGTTTGATACTTATGCA+TGG - chr2_4:6597474-6597493 Msa0311700:intron 25.0%
! AGAAATGATTGAAAGAACAA+AGG - chr2_4:6597705-6597724 Msa0311700:intron 25.0%
!! TTGATTTTCTCCAGTAATAT+AGG + chr2_4:6597800-6597819 None:intergenic 25.0%
! TATATTACTGGAGAAAATCA+AGG - chr2_4:6597799-6597818 Msa0311700:intron 25.0%
! CAAAAGGAAATAGAGATAAA+AGG + chr2_4:6597838-6597857 None:intergenic 25.0%
! TGGAAACAATAAAACATACA+AGG + chr2_4:6598108-6598127 None:intergenic 25.0%
! TAGAGAATATGCAATTAAAC+TGG + chr2_4:6598128-6598147 None:intergenic 25.0%
! AATAAATTCACCATAGTTCA+AGG + chr2_4:6598685-6598704 None:intergenic 25.0%
! TAAAGAAAGTGACATGAAAT+TGG + chr2_4:6598817-6598836 None:intergenic 25.0%
! TCCACTATTAAAACTTGAAA+GGG + chr2_4:6598851-6598870 None:intergenic 25.0%
! ATCCACTATTAAAACTTGAA+AGG + chr2_4:6598852-6598871 None:intergenic 25.0%
!!! TTTTTTACTACTGTAGTTCT+TGG + chr2_4:6598918-6598937 None:intergenic 25.0%
! TCTTGATTGTTCAAAAAAGT+TGG - chr2_4:6599108-6599127 Msa0311700:intron 25.0%
! AAAAAATATAGGCGTAACAA+AGG - chr2_4:6599146-6599165 Msa0311700:intron 25.0%
! TATAGTTCTTCTATTAGTGT+TGG - chr2_4:6599207-6599226 Msa0311700:intron 25.0%
! AAAATAAAGCAACATGTTTG+TGG + chr2_4:6599249-6599268 None:intergenic 25.0%
! TCAATGAAAATTCTTAGTGA+AGG + chr2_4:6599466-6599485 None:intergenic 25.0%
!! TTTCATTGACAATTTTGAAC+TGG - chr2_4:6599477-6599496 Msa0311700:intron 25.0%
! AAACAGTTTGTCAAGAAAAA+TGG + chr2_4:6599703-6599722 None:intergenic 25.0%
!! CTAACTTTAAACTCAACTTT+TGG + chr2_4:6599868-6599887 None:intergenic 25.0%
!! CAAAAGTTGAGTTTAAAGTT+AGG - chr2_4:6599866-6599885 Msa0311700:intron 25.0%
! GATTATTAATGCACTAATGT+CGG + chr2_4:6600436-6600455 None:intergenic 25.0%
!!! TATGTTGCTTTGTTATTTGT+TGG - chr2_4:6600470-6600489 Msa0311700:intron 25.0%
! TTTAAATGGACGAAATTGTT+GGG - chr2_4:6600665-6600684 Msa0311700:five_prime_UTR 25.0%
!! CATTCTTTTTGTACAAAAGA+GGG + chr2_4:6600697-6600716 None:intergenic 25.0%
AAAGAAAAGGATGCAAAGAA+GGG + chr2_4:6594729-6594748 None:intergenic 30.0%
TTGGTTTAAGTGGAAAAATG+CGG - chr2_4:6595012-6595031 Msa0311700:three_prime_UTR 30.0%
AAAAATGCGGAATAAAGAAC+CGG - chr2_4:6595025-6595044 Msa0311700:three_prime_UTR 30.0%
CCTAAATGACTAGATAATGA+AGG + chr2_4:6595226-6595245 None:intergenic 30.0%
CCTTCATTATCTAGTCATTT+AGG - chr2_4:6595223-6595242 Msa0311700:CDS 30.0%
! TATTTGAGGCAAGTGATAAT+AGG - chr2_4:6595279-6595298 Msa0311700:CDS 30.0%
! ATTTGAGGCAAGTGATAATA+GGG - chr2_4:6595280-6595299 Msa0311700:CDS 30.0%
TGATAATAGGGGTAAAATTG+AGG - chr2_4:6595292-6595311 Msa0311700:CDS 30.0%
GATAATAGGGGTAAAATTGA+GGG - chr2_4:6595293-6595312 Msa0311700:CDS 30.0%
ATAAGCTTGTGAGATAATCA+TGG - chr2_4:6595395-6595414 Msa0311700:intron 30.0%
!!! AGCTAGGTTTTTGAGTAATT+GGG + chr2_4:6595433-6595452 None:intergenic 30.0%
!!! AAGCTAGGTTTTTGAGTAAT+TGG + chr2_4:6595434-6595453 None:intergenic 30.0%
ATCAAGCAAATTAAAGGCAA+TGG + chr2_4:6595491-6595510 None:intergenic 30.0%
CATTTAATAGAAGGTTGCAT+GGG + chr2_4:6595515-6595534 None:intergenic 30.0%
ACATTTAATAGAAGGTTGCA+TGG + chr2_4:6595516-6595535 None:intergenic 30.0%
! GGATTTGGTCAAAATAGAAT+AGG - chr2_4:6595567-6595586 Msa0311700:CDS 30.0%
! TTATATTACCCCTTTTCAAC+CGG - chr2_4:6595633-6595652 Msa0311700:intron 30.0%
!! TATTGATTCCTAAAGACTGA+TGG - chr2_4:6595671-6595690 Msa0311700:intron 30.0%
! ATTGATTCCTAAAGACTGAT+GGG - chr2_4:6595672-6595691 Msa0311700:intron 30.0%
TATGGTTATCTCTTTGAACA+AGG - chr2_4:6595775-6595794 Msa0311700:intron 30.0%
ATGGTTATCTCTTTGAACAA+GGG - chr2_4:6595776-6595795 Msa0311700:intron 30.0%
TATCTCAAAATAAGCAACAC+AGG + chr2_4:6595855-6595874 None:intergenic 30.0%
!!! CCATTAGGTTTTTGAGTAAT+TGG + chr2_4:6595951-6595970 None:intergenic 30.0%
CCAATTACTCAAAAACCTAA+TGG - chr2_4:6595948-6595967 Msa0311700:intron 30.0%
!! CTCAAGTCAAAGTATTTTTG+TGG + chr2_4:6595990-6596009 None:intergenic 30.0%
!! AAAAATACTTTGACTTGAGC+AGG - chr2_4:6595991-6596010 Msa0311700:intron 30.0%
ATATTGACATCAAAAAGCTG+TGG - chr2_4:6596063-6596082 Msa0311700:intron 30.0%
GAATGCAGTTTCATATTCTT+AGG - chr2_4:6596139-6596158 Msa0311700:intron 30.0%
GTTAATATTCTTAGGTAAGC+AGG + chr2_4:6596238-6596257 None:intergenic 30.0%
AATATTGACATTAAAGGTGG+TGG + chr2_4:6596620-6596639 None:intergenic 30.0%
! CTATTGCCATTTACCAAATA+GGG + chr2_4:6596656-6596675 None:intergenic 30.0%
ATTCTGTCAACAATCTGTAA+TGG + chr2_4:6596809-6596828 None:intergenic 30.0%
AACAATGGTTGTTATAGTTG+TGG + chr2_4:6596837-6596856 None:intergenic 30.0%
! AACTATGTGACTATCACTTT+TGG + chr2_4:6597237-6597256 None:intergenic 30.0%
! CGTGCTTATTGTTATTCTTT+GGG - chr2_4:6597640-6597659 Msa0311700:intron 30.0%
!!! TTCTTTGGGATTTTTTTCAC+TGG - chr2_4:6597654-6597673 Msa0311700:intron 30.0%
!!! TCTTTGGGATTTTTTTCACT+GGG - chr2_4:6597655-6597674 Msa0311700:intron 30.0%
GATTGAAAGAACAAAGGTTA+AGG - chr2_4:6597711-6597730 Msa0311700:intron 30.0%
TAAGGTTTCTTGTGGTAAAT+TGG - chr2_4:6597729-6597748 Msa0311700:intron 30.0%
TGAAACAATATGACATGACA+TGG + chr2_4:6597863-6597882 None:intergenic 30.0%
CTGAAATTATTGGAATTGGA+AGG + chr2_4:6598205-6598224 None:intergenic 30.0%
TGGACTGAAATTATTGGAAT+TGG + chr2_4:6598209-6598228 None:intergenic 30.0%
TTAACTCTATCTCATTCTCT+AGG - chr2_4:6598233-6598252 Msa0311700:intron 30.0%
! TTTTCTACTTCTCTCAACAT+TGG + chr2_4:6598307-6598326 None:intergenic 30.0%
!! ATTAGTGGGTACATTCATTT+TGG + chr2_4:6598463-6598482 None:intergenic 30.0%
AAACACAATATGCCTATGTT+TGG + chr2_4:6598501-6598520 None:intergenic 30.0%
AAACATAGGCATATTGTGTT+TGG - chr2_4:6598500-6598519 Msa0311700:intron 30.0%
AACATAGGCATATTGTGTTT+GGG - chr2_4:6598501-6598520 Msa0311700:intron 30.0%
! TTGAATAGATTTTCCAGCTA+TGG - chr2_4:6598631-6598650 Msa0311700:intron 30.0%
ACAAATCAAAATTCCATAGC+TGG + chr2_4:6598647-6598666 None:intergenic 30.0%
TACTCGTAATTATCAAGTCA+TGG - chr2_4:6598774-6598793 Msa0311700:intron 30.0%
ATGAAATTGGAGATGATACA+GGG + chr2_4:6598804-6598823 None:intergenic 30.0%
!!! TCCCTTTCAAGTTTTAATAG+TGG - chr2_4:6598847-6598866 Msa0311700:intron 30.0%
! TTATAGGGTGTATTTTGTAG+TGG - chr2_4:6599012-6599031 Msa0311700:intron 30.0%
TTCTATTTAATGGAACCATG+TGG - chr2_4:6599170-6599189 Msa0311700:intron 30.0%
ATAGAATTAGTACTCTGCAT+GGG + chr2_4:6599308-6599327 None:intergenic 30.0%
TATAGAATTAGTACTCTGCA+TGG + chr2_4:6599309-6599328 None:intergenic 30.0%
ATTATATGATCACAGTCATG+AGG - chr2_4:6599584-6599603 Msa0311700:intron 30.0%
GAAATGAGATCAAGACATTT+GGG + chr2_4:6599678-6599697 None:intergenic 30.0%
AGAAATGAGATCAAGACATT+TGG + chr2_4:6599679-6599698 None:intergenic 30.0%
! CTTTAAACTCAACTTTTGGA+GGG + chr2_4:6599864-6599883 None:intergenic 30.0%
! ACTTTAAACTCAACTTTTGG+AGG + chr2_4:6599865-6599884 None:intergenic 30.0%
! GGTTTTCTGCAATAACATAA+TGG + chr2_4:6599917-6599936 None:intergenic 30.0%
ATTGCAGAAAACCTTGTATA+TGG - chr2_4:6599924-6599943 Msa0311700:intron 30.0%
GATGACTATATCCATATACA+AGG + chr2_4:6599938-6599957 None:intergenic 30.0%
CGATATAGTAATGTGATGAA+GGG + chr2_4:6600213-6600232 None:intergenic 30.0%
ACGATATAGTAATGTGATGA+AGG + chr2_4:6600214-6600233 None:intergenic 30.0%
TTTCCTAACATCTTTGCATT+TGG - chr2_4:6600510-6600529 Msa0311700:intron 30.0%
GTTTAAATGGACGAAATTGT+TGG - chr2_4:6600664-6600683 Msa0311700:five_prime_UTR 30.0%
! CCATTCTTTTTGTACAAAAG+AGG + chr2_4:6600698-6600717 None:intergenic 30.0%
! CCTCTTTTGTACAAAAAGAA+TGG - chr2_4:6600695-6600714 Msa0311700:five_prime_UTR 30.0%
ATGCAAAAAGCTAAACGCAA+TGG + chr2_4:6594611-6594630 None:intergenic 35.0%
GAAAGAAAAGGATGCAAAGA+AGG + chr2_4:6594730-6594749 None:intergenic 35.0%
TTTGCGCATTGAGAAAGAAA+AGG + chr2_4:6594742-6594761 None:intergenic 35.0%
CAAAGAGTTCATACGATGTA+GGG + chr2_4:6595194-6595213 None:intergenic 35.0%
! TTTGAGGCAAGTGATAATAG+GGG - chr2_4:6595281-6595300 Msa0311700:CDS 35.0%
TTTGGCAAGTAGAATAAGCT+AGG + chr2_4:6595449-6595468 None:intergenic 35.0%
TTAACGACTTAGGGTCTATT+TGG + chr2_4:6595467-6595486 None:intergenic 35.0%
ATGGGCATCAAGCAAATTAA+AGG + chr2_4:6595497-6595516 None:intergenic 35.0%
! GGTATACTTACAAGTGGATT+TGG - chr2_4:6595552-6595571 Msa0311700:CDS 35.0%
AAAAACACCCATCAGTCTTT+AGG + chr2_4:6595682-6595701 None:intergenic 35.0%
ATATATTGTACGTATGCACG+AGG - chr2_4:6595741-6595760 Msa0311700:CDS 35.0%
TATATTGTACGTATGCACGA+GGG - chr2_4:6595742-6595761 Msa0311700:CDS 35.0%
TATCTCTTTGAACAAGGGTA+TGG - chr2_4:6595781-6595800 Msa0311700:intron 35.0%
!!! TAGGTTTTTGAGTAATTGGG+AGG + chr2_4:6595430-6595449 None:intergenic 35.0%
CTCAAAAACCTAATGGCAAT+TGG - chr2_4:6595955-6595974 Msa0311700:intron 35.0%
CTATTACCATTTACCAAGCA+TGG - chr2_4:6596027-6596046 Msa0311700:intron 35.0%
GGGTTGCAGTTAATATTCTT+AGG + chr2_4:6596246-6596265 None:intergenic 35.0%
!!! AGGAAACCCTTACTTTTTGA+TGG - chr2_4:6596325-6596344 Msa0311700:intron 35.0%
! CAAAGGGTCTAAAACTGATT+GGG + chr2_4:6596507-6596526 None:intergenic 35.0%
! TCAAAGGGTCTAAAACTGAT+TGG + chr2_4:6596508-6596527 None:intergenic 35.0%
GATGATCCCTATTTGGTAAA+TGG - chr2_4:6596647-6596666 Msa0311700:intron 35.0%
! CCTATTGCCATTTACCAAAT+AGG + chr2_4:6596657-6596676 None:intergenic 35.0%
CCTATTTGGTAAATGGCAAT+AGG - chr2_4:6596654-6596673 Msa0311700:intron 35.0%
! CTCAAGTCTAAGTGTTTTTC+TGG - chr2_4:6596693-6596712 Msa0311700:intron 35.0%
! AAGTCTAAGTGTTTTTCTGG+AGG - chr2_4:6596696-6596715 Msa0311700:intron 35.0%
!!! ACACTAGTTTTTTGCAGTCA+CGG - chr2_4:6596758-6596777 Msa0311700:intron 35.0%
! TCTCTTTGAGAAAGGGTATA+TGG + chr2_4:6596882-6596901 None:intergenic 35.0%
! ATGGTGATCTCTTTGAGAAA+GGG + chr2_4:6596889-6596908 None:intergenic 35.0%
! TATGGTGATCTCTTTGAGAA+AGG + chr2_4:6596890-6596909 None:intergenic 35.0%
TTTGTGATCTGCATGAAAAG+AGG - chr2_4:6597049-6597068 Msa0311700:CDS 35.0%
GGTATACTTATACGTGGATT+TGG + chr2_4:6597126-6597145 None:intergenic 35.0%
!! TTGTGGGTATTTTCAAGATC+AGG + chr2_4:6597164-6597183 None:intergenic 35.0%
CCTTAATGACTAGATATGCA+AGG + chr2_4:6597535-6597554 None:intergenic 35.0%
CCTTGCATATCTAGTCATTA+AGG - chr2_4:6597532-6597551 Msa0311700:intron 35.0%
!! GTGCTAACATGTTTAACTTG+AGG - chr2_4:6597577-6597596 Msa0311700:CDS 35.0%
! GCGTGCTTATTGTTATTCTT+TGG - chr2_4:6597639-6597658 Msa0311700:intron 35.0%
!!! CTTTGGGATTTTTTTCACTG+GGG - chr2_4:6597656-6597675 Msa0311700:intron 35.0%
!!! TTTGGGATTTTTTTCACTGG+GGG - chr2_4:6597657-6597676 Msa0311700:intron 35.0%
ACAAAGGTTAAGGTTTCTTG+TGG - chr2_4:6597721-6597740 Msa0311700:intron 35.0%
TCTGTTATTCCCTTTAATGC+AGG - chr2_4:6597911-6597930 Msa0311700:intron 35.0%
TTCTCTACTTTAACCTTCGA+TGG - chr2_4:6598141-6598160 Msa0311700:intron 35.0%
AACCTTCGATGGATATATTC+TGG - chr2_4:6598152-6598171 Msa0311700:intron 35.0%
!! CATTCTCTAGGAGCATATTT+TGG - chr2_4:6598245-6598264 Msa0311700:intron 35.0%
TTCTTCGTTTCTTGTGTTTC+TGG - chr2_4:6598395-6598414 Msa0311700:intron 35.0%
TCTTCGTTTCTTGTGTTTCT+GGG - chr2_4:6598396-6598415 Msa0311700:intron 35.0%
GTATACATAGTAATCTCTGC+AGG - chr2_4:6598523-6598542 Msa0311700:intron 35.0%
! TTTCAACTAGCCTAACCTAA+AGG + chr2_4:6598549-6598568 None:intergenic 35.0%
TCTATCAAGCCTTGAACTAT+GGG - chr2_4:6598602-6598621 Msa0311700:intron 35.0%
CAAATAGTTCCCATAGTTCA+AGG + chr2_4:6598614-6598633 None:intergenic 35.0%
! ATTTTGCAAGCCTTGAACTA+TGG - chr2_4:6598672-6598691 Msa0311700:intron 35.0%
CATGAAATTGGAGATGATAC+AGG + chr2_4:6598805-6598824 None:intergenic 35.0%
!!! AGTGGATTATCATTTTGGTG+CGG - chr2_4:6598865-6598884 Msa0311700:intron 35.0%
CTCCATATCGTAACATTAAC+AGG + chr2_4:6598948-6598967 None:intergenic 35.0%
AAGTGCTTTGCATCAGAAAT+CGG - chr2_4:6598974-6598993 Msa0311700:intron 35.0%
! TATCTCTTCTAACTTTTCCC+AGG - chr2_4:6599057-6599076 Msa0311700:intron 35.0%
! GAACCATGTGGAAAATTTTC+TGG - chr2_4:6599182-6599201 Msa0311700:intron 35.0%
! ATGCCAGAAAATTTTCCACA+TGG + chr2_4:6599188-6599207 None:intergenic 35.0%
TAGAATTAGTACTCTGCATG+GGG + chr2_4:6599307-6599326 None:intergenic 35.0%
! CTGGAAGCATGATATATTCT+CGG - chr2_4:6599496-6599515 Msa0311700:intron 35.0%
AGCTAGATGAACAGCAAATT+GGG + chr2_4:6599535-6599554 None:intergenic 35.0%
GATCAGTCAGTTTCAGATTA+TGG - chr2_4:6599627-6599646 Msa0311700:intron 35.0%
TTGGTTAAGCCCATAATGAA+AGG + chr2_4:6599795-6599814 None:intergenic 35.0%
AACAGCAACATGAAAGAGAT+GGG + chr2_4:6599980-6599999 None:intergenic 35.0%
AAACAGCAACATGAAAGAGA+TGG + chr2_4:6599981-6600000 None:intergenic 35.0%
AAATCATCATGATTTCACGC+CGG - chr2_4:6600140-6600159 Msa0311700:intron 35.0%
ATCACATTACTATATCGTCC+TGG - chr2_4:6600216-6600235 Msa0311700:CDS 35.0%
ACTCCAAATGCAAAGATGTT+AGG + chr2_4:6600516-6600535 None:intergenic 35.0%
!!! AAAGAACCGGTTTTGGATGA+TGG - chr2_4:6595038-6595057 Msa0311700:three_prime_UTR 40.0%
!!! AAGAACCGGTTTTGGATGAT+GGG - chr2_4:6595039-6595058 Msa0311700:three_prime_UTR 40.0%
AGCCAAGAAATTTCCGTTTG+TGG - chr2_4:6595154-6595173 Msa0311700:CDS 40.0%
GCCAAGAAATTTCCGTTTGT+GGG - chr2_4:6595155-6595174 Msa0311700:CDS 40.0%
ACCCACAAACGGAAATTTCT+TGG + chr2_4:6595159-6595178 None:intergenic 40.0%
ATTTCCGTTTGTGGGTGATA+AGG - chr2_4:6595163-6595182 Msa0311700:CDS 40.0%
CTTACCTTATCACCCACAAA+CGG + chr2_4:6595170-6595189 None:intergenic 40.0%
GCAAAGAGTTCATACGATGT+AGG + chr2_4:6595195-6595214 None:intergenic 40.0%
GGCAATGGTTTAACGACTTA+GGG + chr2_4:6595476-6595495 None:intergenic 40.0%
AGGCAATGGTTTAACGACTT+AGG + chr2_4:6595477-6595496 None:intergenic 40.0%
TGACACACTTGATCTCCATT+GGG + chr2_4:6595914-6595933 None:intergenic 40.0%
TTGACACACTTGATCTCCAT+TGG + chr2_4:6595915-6595934 None:intergenic 40.0%
AAACCTAATGGCAATTGGTG+TGG - chr2_4:6595960-6595979 Msa0311700:intron 40.0%
GCAGGATATTCTTAAGAACG+CGG + chr2_4:6596220-6596239 None:intergenic 40.0%
!! GGCTCTAGAGACACATAATT+GGG - chr2_4:6596409-6596428 Msa0311700:intron 40.0%
!! GCTCTAGAGACACATAATTG+GGG - chr2_4:6596410-6596429 Msa0311700:intron 40.0%
!! TGGGGACAATTTTGACATAC+TGG - chr2_4:6596428-6596447 Msa0311700:intron 40.0%
GACACATAATAGGGGACATT+TGG + chr2_4:6596477-6596496 None:intergenic 40.0%
TGTCCCCTATTATGTGTCAT+TGG - chr2_4:6596479-6596498 Msa0311700:intron 40.0%
GCTCCAATGACACATAATAG+GGG + chr2_4:6596485-6596504 None:intergenic 40.0%
GGCTCCAATGACACATAATA+GGG + chr2_4:6596486-6596505 None:intergenic 40.0%
GTGAACAATGTTGTCAATGC+GGG + chr2_4:6596551-6596570 None:intergenic 40.0%
GGTGAACAATGTTGTCAATG+CGG + chr2_4:6596552-6596571 None:intergenic 40.0%
ACCAAAACCATCAACAAGCA+AGG - chr2_4:6596569-6596588 Msa0311700:intron 40.0%
CCAAAACCATCAACAAGCAA+GGG - chr2_4:6596570-6596589 Msa0311700:intron 40.0%
! AGAAAACCCTTGCTTGTTGA+TGG + chr2_4:6596579-6596598 None:intergenic 40.0%
!! ACATTAAAGGTGGTGGAGTT+AGG + chr2_4:6596613-6596632 None:intergenic 40.0%
CCACCCAGTTTGTAGTAATT+GGG - chr2_4:6596732-6596751 Msa0311700:intron 40.0%
CCTCCCAATTACTACAAACT+GGG + chr2_4:6596738-6596757 None:intergenic 40.0%
TCCTCCCAATTACTACAAAC+TGG + chr2_4:6596739-6596758 None:intergenic 40.0%
CAATCTGTAATGGTGCAAGA+AGG + chr2_4:6596799-6596818 None:intergenic 40.0%
ACCATTGTTGAATAGAGCTG+TGG - chr2_4:6596848-6596867 Msa0311700:intron 40.0%
ACCACAGCTCTATTCAACAA+TGG + chr2_4:6596852-6596871 None:intergenic 40.0%
TGAATAGAGCTGTGGTTTCA+AGG - chr2_4:6596856-6596875 Msa0311700:intron 40.0%
GTATGTATTGTATGCGCAGA+AGG + chr2_4:6596923-6596942 None:intergenic 40.0%
GATTTGGATTCTTGGCAGTA+AGG + chr2_4:6597190-6597209 None:intergenic 40.0%
ATTAGGATGGTCAGCAACTA+AGG + chr2_4:6597372-6597391 None:intergenic 40.0%
TTTCAAAGAGTGATGCAAGG+TGG + chr2_4:6597505-6597524 None:intergenic 40.0%
AGGTTTCAAAGAGTGATGCA+AGG + chr2_4:6597508-6597527 None:intergenic 40.0%
GACTAGATATGCAAGGAAAC+AGG + chr2_4:6597528-6597547 None:intergenic 40.0%
!!! TTGGGATTTTTTTCACTGGG+GGG - chr2_4:6597658-6597677 Msa0311700:intron 40.0%
GTTTCTTGTGGTAAATTGGC+AGG - chr2_4:6597733-6597752 Msa0311700:intron 40.0%
TTGGCTGCTGAATATCAATC+AGG - chr2_4:6597770-6597789 Msa0311700:intron 40.0%
ATCAGGCAGTCCTATATTAC+TGG - chr2_4:6597787-6597806 Msa0311700:intron 40.0%
ATGACATGACATGGCACAAA+AGG + chr2_4:6597854-6597873 None:intergenic 40.0%
CATCAAGCACCTGCATTAAA+GGG + chr2_4:6597923-6597942 None:intergenic 40.0%
CTTTAATGCAGGTGCTTGAT+GGG - chr2_4:6597922-6597941 Msa0311700:intron 40.0%
AGCCAGAATATATCCATCGA+AGG + chr2_4:6598157-6598176 None:intergenic 40.0%
! TCGATGGATATATTCTGGCT+TGG - chr2_4:6598157-6598176 Msa0311700:intron 40.0%
!! CGATGGATATATTCTGGCTT+GGG - chr2_4:6598158-6598177 Msa0311700:intron 40.0%
!! ATATATTCTGGCTTGGGTCT+AGG - chr2_4:6598164-6598183 Msa0311700:intron 40.0%
!! TATATTCTGGCTTGGGTCTA+GGG - chr2_4:6598165-6598184 Msa0311700:intron 40.0%
!! TAGAAAAGCACTTCAGACCT+TGG - chr2_4:6598320-6598339 Msa0311700:intron 40.0%
!! AGAAAAGCACTTCAGACCTT+GGG - chr2_4:6598321-6598340 Msa0311700:intron 40.0%
AGTCAATTCTGCATAACCCA+AGG + chr2_4:6598340-6598359 None:intergenic 40.0%
GTCTATCAAGCCTTGAACTA+TGG - chr2_4:6598601-6598620 Msa0311700:intron 40.0%
GGCCTGTTAATGTTACGATA+TGG - chr2_4:6598943-6598962 Msa0311700:intron 40.0%
CAGACCAGAGCTATGTTATA+GGG - chr2_4:6598997-6599016 Msa0311700:intron 40.0%
TACACCCTATAACATAGCTC+TGG + chr2_4:6599004-6599023 None:intergenic 40.0%
!! CATTTCTAGTCAGTTCTCCT+GGG + chr2_4:6599077-6599096 None:intergenic 40.0%
AGCTGGAAGACGTTATTCAA+GGG - chr2_4:6599410-6599429 Msa0311700:intron 40.0%
AGGAGTCAGTTATCACCTTA+TGG + chr2_4:6599446-6599465 None:intergenic 40.0%
GAGCTAGATGAACAGCAAAT+TGG + chr2_4:6599536-6599555 None:intergenic 40.0%
GATCAAGACATTTGGGCATT+GGG + chr2_4:6599671-6599690 None:intergenic 40.0%
AGATCAAGACATTTGGGCAT+TGG + chr2_4:6599672-6599691 None:intergenic 40.0%
AACCAATACAACAGTTGAGC+AGG - chr2_4:6599809-6599828 Msa0311700:intron 40.0%
AACCTGCTCAACTGTTGTAT+TGG + chr2_4:6599814-6599833 None:intergenic 40.0%
ACAGCAACATGAAAGAGATG+GGG + chr2_4:6599979-6599998 None:intergenic 40.0%
AAATCAGCTGTTGAGCCAAT+GGG - chr2_4:6600009-6600028 Msa0311700:intron 40.0%
AATGCCCAATGCATCTGAAA+GGG + chr2_4:6600064-6600083 None:intergenic 40.0%
TCAAGATACACAACACGGAT+TGG + chr2_4:6600087-6600106 None:intergenic 40.0%
TACGGTCAAGATACACAACA+CGG + chr2_4:6600092-6600111 None:intergenic 40.0%
TAGAGGATATCATAGTGACC+AGG + chr2_4:6600237-6600256 None:intergenic 40.0%
GATATCCTCTATCCAAAGTG+AGG - chr2_4:6600246-6600265 Msa0311700:CDS 40.0%
ATCATCCTCACTTTGGATAG+AGG + chr2_4:6600254-6600273 None:intergenic 40.0%
CCAATAGATCATCCTCACTT+TGG + chr2_4:6600261-6600280 None:intergenic 40.0%
CCAAAGTGAGGATGATCTAT+TGG - chr2_4:6600258-6600277 Msa0311700:CDS 40.0%
ATTAACAACCAAGCTCAGTG+TGG + chr2_4:6600314-6600333 None:intergenic 40.0%
ACTGAGCTTGGTTGTTAATG+AGG - chr2_4:6600315-6600334 Msa0311700:exon 40.0%
CTGAGCTTGGTTGTTAATGA+GGG - chr2_4:6600316-6600335 Msa0311700:exon 40.0%
TTGCTCTTCACTCTCTCACA+CGG - chr2_4:6594673-6594692 Msa0311700:three_prime_UTR 45.0%
! TAGCTTGCGATTTCGATCGA+AGG - chr2_4:6594696-6594715 Msa0311700:three_prime_UTR 45.0%
!! GCGGAATAAAGAACCGGTTT+TGG - chr2_4:6595031-6595050 Msa0311700:three_prime_UTR 45.0%
!!! AGAACCGGTTTTGGATGATG+GGG - chr2_4:6595040-6595059 Msa0311700:three_prime_UTR 45.0%
ACTTCCCCATCATCCAAAAC+CGG + chr2_4:6595047-6595066 None:intergenic 45.0%
TGATGGGGAAGTAGAGTATG+AGG - chr2_4:6595055-6595074 Msa0311700:three_prime_UTR 45.0%
AAATTACCCCACGCAGATTC+TGG + chr2_4:6595086-6595105 None:intergenic 45.0%
! ATCTGCGTGGGGTAATTTTG+AGG - chr2_4:6595088-6595107 Msa0311700:exon 45.0%
GCAGCAGCAATCTTCTATTC+AGG - chr2_4:6595124-6595143 Msa0311700:CDS 45.0%
CGTTTGTGGGTGATAAGGTA+AGG - chr2_4:6595168-6595187 Msa0311700:CDS 45.0%
TGTGTGATCCGGTTGAAAAG+GGG + chr2_4:6595644-6595663 None:intergenic 45.0%
GTGTGTGATCCGGTTGAAAA+GGG + chr2_4:6595645-6595664 None:intergenic 45.0%
TGTGTGTGATCCGGTTGAAA+AGG + chr2_4:6595646-6595665 None:intergenic 45.0%
!! CACGAGGGTGTTTGTTGTTA+TGG - chr2_4:6595757-6595776 Msa0311700:intron 45.0%
CAGAGTTGTGCTTAGTGTTG+TGG + chr2_4:6595815-6595834 None:intergenic 45.0%
GCACAACTCTGTTTCGACAT+TGG - chr2_4:6595824-6595843 Msa0311700:intron 45.0%
TAAGTGTCAACGATCCCCAA+TGG - chr2_4:6595896-6595915 Msa0311700:intron 45.0%
GACACACTTGATCTCCATTG+GGG + chr2_4:6595913-6595932 None:intergenic 45.0%
GAACCACACCAATTGCCATT+AGG + chr2_4:6595966-6595985 None:intergenic 45.0%
GGATGACCATGCTTGGTAAA+TGG + chr2_4:6596036-6596055 None:intergenic 45.0%
TGAACTAGGATGACCATGCT+TGG + chr2_4:6596043-6596062 None:intergenic 45.0%
CATCAAAAAGCTGTGGTGCT+AGG - chr2_4:6596070-6596089 Msa0311700:intron 45.0%
GGAACACGGCTACATTTGTT+TGG - chr2_4:6596179-6596198 Msa0311700:intron 45.0%
!! GGGCTCTAGAGACACATAAT+TGG - chr2_4:6596408-6596427 Msa0311700:intron 45.0%
GGGCTCCAATGACACATAAT+AGG + chr2_4:6596487-6596506 None:intergenic 45.0%
!!! CCCTTGCTTGTTGATGGTTT+TGG + chr2_4:6596573-6596592 None:intergenic 45.0%
GAACTGGGATGATCCCTATT+TGG - chr2_4:6596640-6596659 Msa0311700:intron 45.0%
GCCACCCAGTTTGTAGTAAT+TGG - chr2_4:6596731-6596750 Msa0311700:intron 45.0%
CCCAATTACTACAAACTGGG+TGG + chr2_4:6596735-6596754 None:intergenic 45.0%
CCCAGTTTGTAGTAATTGGG+AGG - chr2_4:6596735-6596754 Msa0311700:intron 45.0%
!! GCAGAAGGTGTTTGTGGTTA+TGG + chr2_4:6596908-6596927 None:intergenic 45.0%
ATGGTCAGCAACTAAGGAAG+TGG + chr2_4:6597366-6597385 None:intergenic 45.0%
!!! GATTTTTTTCACTGGGGGGA+TGG - chr2_4:6597662-6597681 Msa0311700:intron 45.0%
CCATCAAGCACCTGCATTAA+AGG + chr2_4:6597924-6597943 None:intergenic 45.0%
CCTTTAATGCAGGTGCTTGA+TGG - chr2_4:6597921-6597940 Msa0311700:intron 45.0%
ATGGGCAATATGCTGCCATT+CGG - chr2_4:6597940-6597959 Msa0311700:intron 45.0%
GATGGAAACTGCTTCTTTCG+AGG - chr2_4:6597975-6597994 Msa0311700:intron 45.0%
!! GTGGGTACATTCATTTTGGC+TGG + chr2_4:6598459-6598478 None:intergenic 45.0%
AGTAATCTCTGCAGGCCTTT+AGG - chr2_4:6598531-6598550 Msa0311700:intron 45.0%
GCAGACCAGAGCTATGTTAT+AGG - chr2_4:6598996-6599015 Msa0311700:intron 45.0%
!! CCATTTCTAGTCAGTTCTCC+TGG + chr2_4:6599078-6599097 None:intergenic 45.0%
CCAGGAGAACTGACTAGAAA+TGG - chr2_4:6599075-6599094 Msa0311700:intron 45.0%
TCAGTTATTCCTTGAGCAGC+TGG - chr2_4:6599393-6599412 Msa0311700:intron 45.0%
CAGCTGGAAGACGTTATTCA+AGG - chr2_4:6599409-6599428 Msa0311700:intron 45.0%
AAGGGAAAGAGACGTCCATA+AGG - chr2_4:6599428-6599447 Msa0311700:intron 45.0%
CAAATCAGCTGTTGAGCCAA+TGG - chr2_4:6600008-6600027 Msa0311700:intron 45.0%
AAAGGGCGGTAATGTGAACA+TGG + chr2_4:6600047-6600066 None:intergenic 45.0%
GAATGCCCAATGCATCTGAA+AGG + chr2_4:6600065-6600084 None:intergenic 45.0%
TGGAGTTAGTGAGTTCTGTG+AGG - chr2_4:6600530-6600549 Msa0311700:intron 45.0%
GGAGTTAGTGAGTTCTGTGA+GGG - chr2_4:6600531-6600550 Msa0311700:intron 45.0%
AGAATCTACGCAGGCTACAA+GGG + chr2_4:6600564-6600583 None:intergenic 45.0%
TCATTCTGCAGAATCTACGC+AGG + chr2_4:6600573-6600592 None:intergenic 45.0%
AAATGCGCAGACATGCAATG+CGG + chr2_4:6600626-6600645 None:intergenic 45.0%
TGCTTAGTGTTGTGGTCACG+AGG + chr2_4:6595807-6595826 None:intergenic 50.0%
!! GTATGCGCAGAAGGTGTTTG+TGG + chr2_4:6596914-6596933 None:intergenic 50.0%
CTTGGCAGTAAGGCTGTTGT+GGG + chr2_4:6597180-6597199 None:intergenic 50.0%
TCTTGGCAGTAAGGCTGTTG+TGG + chr2_4:6597181-6597200 None:intergenic 50.0%
GCAGGAACCACTATCTAGCT+TGG - chr2_4:6597751-6597770 Msa0311700:intron 50.0%
TCAGCAGCCAAGCTAGATAG+TGG + chr2_4:6597761-6597780 None:intergenic 50.0%
! TCTCTGCAGGCCTTTAGGTT+AGG - chr2_4:6598536-6598555 Msa0311700:intron 50.0%
TAACGTCTTCCAGCTGCTCA+AGG + chr2_4:6599405-6599424 None:intergenic 50.0%
!! AGACATTTGGGCATTGGGAC+AGG + chr2_4:6599666-6599685 None:intergenic 50.0%
TACCGCCCTTTCAGATGCAT+TGG - chr2_4:6600056-6600075 Msa0311700:intron 50.0%
ACCGCCCTTTCAGATGCATT+GGG - chr2_4:6600057-6600076 Msa0311700:intron 50.0%
GACCGTAGCTCATGTGATAC+TGG - chr2_4:6600105-6600124 Msa0311700:intron 50.0%
CGCCAGTATCACATGAGCTA+CGG + chr2_4:6600110-6600129 None:intergenic 50.0%
CGTAGCTCATGTGATACTGG+CGG - chr2_4:6600108-6600127 Msa0311700:intron 50.0%
CAGAGCTACCACTAGCACTT+GGG + chr2_4:6600179-6600198 None:intergenic 50.0%
TCAGAGCTACCACTAGCACT+TGG + chr2_4:6600180-6600199 None:intergenic 50.0%
ATTCAGCTCCACACTGAGCT+TGG - chr2_4:6600303-6600322 Msa0311700:CDS 50.0%
TAGTGAGTTCTGTGAGGGCA+TGG - chr2_4:6600536-6600555 Msa0311700:intron 50.0%
AATCTACGCAGGCTACAAGG+GGG + chr2_4:6600562-6600581 None:intergenic 50.0%
GAATCTACGCAGGCTACAAG+GGG + chr2_4:6600563-6600582 None:intergenic 50.0%
CAGAATCTACGCAGGCTACA+AGG + chr2_4:6600565-6600584 None:intergenic 50.0%
GGGGAAGTAGAGTATGAGGC+TGG - chr2_4:6595059-6595078 Msa0311700:three_prime_UTR 55.0%
! TTTTCACTGGGGGGATGGAG+AGG - chr2_4:6597667-6597686 Msa0311700:intron 55.0%
ATCTCCACGAGTACGCCGAA+TGG + chr2_4:6597958-6597977 None:intergenic 55.0%
ATTCGGCGTACTCGTGGAGA+TGG - chr2_4:6597957-6597976 Msa0311700:intron 55.0%
! TGGCTTGGGTCTAGGGAGTA+TGG - chr2_4:6598172-6598191 Msa0311700:intron 55.0%
TGGTCGCTCTCTTCTCCCAT+TGG + chr2_4:6600027-6600046 None:intergenic 55.0%
GCCCAATGCATCTGAAAGGG+CGG + chr2_4:6600061-6600080 None:intergenic 55.0%
! CATGATTTCACGCCGGTTGC+TGG - chr2_4:6600147-6600166 Msa0311700:intron 55.0%
CTTGGGAGATCACCAGCAAC+CGG + chr2_4:6600162-6600181 None:intergenic 55.0%
GGTGATCTCCCAAGTGCTAG+TGG - chr2_4:6600168-6600187 Msa0311700:intron 55.0%
! AGGCTGGTCCAGAATCTGCG+TGG - chr2_4:6595075-6595094 Msa0311700:exon 60.0%
! GGCTGGTCCAGAATCTGCGT+GGG - chr2_4:6595076-6595095 Msa0311700:exon 60.0%
GCTGGTCCAGAATCTGCGTG+GGG - chr2_4:6595077-6595096 Msa0311700:exon 60.0%
GCTGCCATTCGGCGTACTCG+TGG - chr2_4:6597951-6597970 Msa0311700:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 6594579 6600781 6594579 ID=Msa0311700;Name=Msa0311700
chr2_4 mRNA 6594579 6600781 6594579 ID=Msa0311700-mRNA-1;Parent=Msa0311700;Name=Msa0311700-mRNA-1;_AED=0.05;_eAED=0.05;_QI=212|1|1|1|0.87|0.77|9|515|298
chr2_4 exon 6594579 6595357 6594579 ID=Msa0311700-mRNA-1:exon:2562;Parent=Msa0311700-mRNA-1
chr2_4 exon 6595530 6595630 6595530 ID=Msa0311700-mRNA-1:exon:2561;Parent=Msa0311700-mRNA-1
chr2_4 exon 6595712 6595761 6595712 ID=Msa0311700-mRNA-1:exon:2560;Parent=Msa0311700-mRNA-1
chr2_4 exon 6595911 6595963 6595911 ID=Msa0311700-mRNA-1:exon:2559;Parent=Msa0311700-mRNA-1
chr2_4 exon 6596983 6597105 6596983 ID=Msa0311700-mRNA-1:exon:2558;Parent=Msa0311700-mRNA-1
chr2_4 exon 6597344 6597427 6597344 ID=Msa0311700-mRNA-1:exon:2557;Parent=Msa0311700-mRNA-1
chr2_4 exon 6597540 6597605 6597540 ID=Msa0311700-mRNA-1:exon:2556;Parent=Msa0311700-mRNA-1
chr2_4 exon 6600176 6600404 6600176 ID=Msa0311700-mRNA-1:exon:2555;Parent=Msa0311700-mRNA-1
chr2_4 exon 6600643 6600781 6600643 ID=Msa0311700-mRNA-1:exon:2554;Parent=Msa0311700-mRNA-1
chr2_4 five_prime_UTR 6600643 6600781 6600643 ID=Msa0311700-mRNA-1:five_prime_utr;Parent=Msa0311700-mRNA-1
chr2_4 five_prime_UTR 6600332 6600404 6600332 ID=Msa0311700-mRNA-1:five_prime_utr;Parent=Msa0311700-mRNA-1
chr2_4 CDS 6600176 6600331 6600176 ID=Msa0311700-mRNA-1:cds;Parent=Msa0311700-mRNA-1
chr2_4 CDS 6597540 6597605 6597540 ID=Msa0311700-mRNA-1:cds;Parent=Msa0311700-mRNA-1
chr2_4 CDS 6597344 6597427 6597344 ID=Msa0311700-mRNA-1:cds;Parent=Msa0311700-mRNA-1
chr2_4 CDS 6596983 6597105 6596983 ID=Msa0311700-mRNA-1:cds;Parent=Msa0311700-mRNA-1
chr2_4 CDS 6595911 6595963 6595911 ID=Msa0311700-mRNA-1:cds;Parent=Msa0311700-mRNA-1
chr2_4 CDS 6595712 6595761 6595712 ID=Msa0311700-mRNA-1:cds;Parent=Msa0311700-mRNA-1
chr2_4 CDS 6595530 6595630 6595530 ID=Msa0311700-mRNA-1:cds;Parent=Msa0311700-mRNA-1
chr2_4 CDS 6595094 6595357 6595094 ID=Msa0311700-mRNA-1:cds;Parent=Msa0311700-mRNA-1
chr2_4 three_prime_UTR 6594579 6595093 6594579 ID=Msa0311700-mRNA-1:three_prime_utr;Parent=Msa0311700-mRNA-1
Gene Sequence

>Msa0311700

ATGCGGAATAAAGAACCGGTTTTGGATGATGGGGAAGTAGAGTATGAGGCTGGTCCAGAATCTGCGTGGGGTAATTTTGAGGATGATGATGTAATGCAGCAGCAATCTTCTATTCAGGATGATGAAGCCAAGAAATTTCCGTTTGTGGGTGATAAGGAACCACTATCTAGCTTGGCTGCTGAATATCAATCAGGCAGTCCTATATTACTGGAGAAAATCAAGGTGCTTGATGGGCAATATGCTGCCATTCGGCGTACTCGTGGAGATGGAAACTGCTTCTTTCGAGGCTTTATGTTTTCATACCTTGAGCATATTTTGGAAGCTCAAGACAGTGCAGAAATTGATCGCATCAAAGCCAATGTTGAGAGAAGTAGAAAAGCACTTCAGACCTTGGGTTATGCAGAATTGACTTTTGAAGATTTTTTTACGTTATTCCTTGAGCAGCTGGAAGACGTTATTCAAGGGAAAGAGACGTCCATAAGTCATGAGGAGCTTGTTATTAGAAGTCGAGATCAGTCAGTTTCAGATTATGTTGTTATGTTCTTCAGATTTGTTACATCTGCTGAAATACAGAAGCGCTCAGAATTTTTTGAACCTTTCATTATGGGCTTAACCAATACAACAGTTGAGCAGTTCTGCAAATCAGCTGTTGAGCCAATGGGAGAAGAGAGCGACCATGTTCACATTACCGCCCTTTCAGATGCATTGGGCATTCCAATCCGTGTTGTGTATCTTGACCGTAGCTCATGTGATACTGGCGGTGTCAGTGTAAATCATCATGATTTCACGCCGGTTGCTGGTGATCTCCCAAGTGCTAGTGGTAGCTCTGAAAAGAAGAATCCCTTCATCACATTACTATATCGTCCTGGTCACTATGATATCCTCTATCCAAAGTGA

Protein sequence

>Msa0311700

MRNKEPVLDDGEVEYEAGPESAWGNFEDDDVMQQQSSIQDDEAKKFPFVGDKEPLSSLAAEYQSGSPILLEKIKVLDGQYAAIRRTRGDGNCFFRGFMFSYLEHILEAQDSAEIDRIKANVERSRKALQTLGYAELTFEDFFTLFLEQLEDVIQGKETSISHEELVIRSRDQSVSDYVVMFFRFVTSAEIQKRSEFFEPFIMGLTNTTVEQFCKSAVEPMGEESDHVHITALSDALGIPIRVVYLDRSSCDTGGVSVNHHDFTPVAGDLPSASGSSEKKNPFITLLYRPGHYDILYPK*