Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009340 | Msa0037320 | 0.803166 | 3.968514e-49 | -8.615850e-47 |
| Msa0009340 | Msa0059140 | 0.937458 | 3.350921e-98 | -8.615850e-47 |
| Msa0009340 | Msa0059200 | 0.844180 | 8.866725e-59 | -8.615850e-47 |
| Msa0009340 | Msa0150340 | 0.862521 | 4.779901e-64 | -8.615850e-47 |
| Msa0009340 | Msa0150350 | 0.829097 | 6.228572e-55 | -8.615850e-47 |
| Msa0009340 | Msa0178040 | 0.804109 | 2.529232e-49 | -8.615850e-47 |
| Msa0009340 | Msa0187310 | 0.805125 | 1.552101e-49 | -8.615850e-47 |
| Msa0009340 | Msa0196670 | 0.800115 | 1.676632e-48 | -8.615850e-47 |
| Msa0009340 | Msa0319290 | 0.800262 | 1.565494e-48 | -8.615850e-47 |
| Msa0009340 | Msa0364790 | 0.831598 | 1.524065e-55 | -8.615850e-47 |
| Msa0009340 | Msa0456770 | 0.816199 | 6.252882e-52 | -8.615850e-47 |
| Msa0009340 | Msa0734940 | 0.815649 | 8.296941e-52 | -8.615850e-47 |
| Msa0009340 | Msa0742150 | 0.813232 | 2.840292e-51 | -8.615850e-47 |
| Msa0009340 | Msa0823440 | 0.817632 | 2.981141e-52 | -8.615850e-47 |
| Msa0009340 | Msa0882400 | 0.803051 | 4.191472e-49 | -8.615850e-47 |
| Msa0009340 | Msa0898320 | 0.803324 | 3.681502e-49 | -8.615850e-47 |
| Msa0009340 | Msa0947480 | 0.808219 | 3.448130e-50 | -8.615850e-47 |
| Msa0009340 | Msa1013070 | 0.810759 | 9.826852e-51 | -8.615850e-47 |
| Msa0009340 | Msa1023300 | 0.818827 | 1.599349e-52 | -8.615850e-47 |
| Msa0009340 | Msa1150800 | 0.814422 | 1.552980e-51 | -8.615850e-47 |
| Msa0009340 | Msa1150810 | 0.814969 | 1.175372e-51 | -8.615850e-47 |
| Msa0009340 | Msa1182430 | 0.804466 | 2.131045e-49 | -8.615850e-47 |
| Msa0009340 | Msa1347330 | 0.819017 | 1.448429e-52 | -8.615850e-47 |
| Msa0009340 | Msa1411410 | 0.809065 | 2.274905e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009340 | MtrunA17_Chr1g0157881 | 77.317 | 410 | 28 | 3 | 54 | 398 | 43 | 452 | 0.0 | 614 |
| Msa0009340 | MtrunA17_Chr1g0157861 | 64.851 | 404 | 73 | 7 | 54 | 398 | 28 | 421 | 1.61e-170 | 495 |
| Msa0009340 | MtrunA17_Chr1g0157931 | 81.818 | 264 | 42 | 3 | 136 | 398 | 1 | 259 | 1.13e-152 | 444 |
| Msa0009340 | MtrunA17_Chr1g0157911 | 52.713 | 387 | 114 | 11 | 54 | 398 | 26 | 385 | 4.76e-126 | 380 |
| Msa0009340 | MtrunA17_Chr1g0158411 | 35.459 | 392 | 173 | 13 | 53 | 398 | 36 | 393 | 1.11e-59 | 206 |
| Msa0009340 | MtrunA17_Chr6g0467711 | 36.719 | 384 | 177 | 11 | 54 | 398 | 33 | 389 | 5.21e-56 | 196 |
| Msa0009340 | MtrunA17_Chr1g0158151 | 31.017 | 403 | 180 | 16 | 51 | 398 | 15 | 374 | 9.81e-44 | 162 |
| Msa0009340 | MtrunA17_Chr1g0157791 | 32.323 | 396 | 174 | 17 | 54 | 398 | 23 | 375 | 2.76e-43 | 160 |
| Msa0009340 | MtrunA17_Chr1g0158041 | 29.381 | 388 | 180 | 15 | 66 | 398 | 31 | 379 | 1.95e-38 | 147 |
| Msa0009340 | MtrunA17_Chr1g0157991 | 28.645 | 391 | 180 | 15 | 66 | 398 | 33 | 382 | 1.23e-37 | 144 |
| Msa0009340 | MtrunA17_Chr1g0158191 | 31.202 | 391 | 171 | 16 | 66 | 398 | 29 | 379 | 3.15e-37 | 143 |
| Msa0009340 | MtrunA17_Chr1g0158461 | 35.849 | 265 | 127 | 9 | 54 | 282 | 38 | 295 | 5.64e-37 | 136 |
| Msa0009340 | MtrunA17_Chr1g0158631 | 30.203 | 394 | 168 | 17 | 62 | 398 | 28 | 371 | 9.72e-36 | 139 |
| Msa0009340 | MtrunA17_Chr1g0158661 | 29.870 | 385 | 167 | 14 | 62 | 398 | 28 | 357 | 3.26e-35 | 137 |
| Msa0009340 | MtrunA17_Chr1g0158731 | 33.099 | 284 | 114 | 11 | 54 | 295 | 26 | 275 | 4.11e-35 | 131 |
| Msa0009340 | MtrunA17_Chr3g0088331 | 32.857 | 280 | 117 | 11 | 54 | 295 | 29 | 275 | 1.71e-34 | 129 |
| Msa0009340 | MtrunA17_Chr1g0158331 | 33.119 | 311 | 137 | 15 | 54 | 317 | 37 | 323 | 3.50e-32 | 124 |
| Msa0009340 | MtrunA17_Chr1g0158301 | 29.688 | 384 | 187 | 14 | 66 | 404 | 42 | 387 | 5.27e-32 | 128 |
| Msa0009340 | MtrunA17_Chr1g0158061 | 29.553 | 291 | 126 | 10 | 66 | 310 | 30 | 287 | 6.47e-32 | 122 |
| Msa0009340 | MtrunA17_Chr1g0158541 | 29.581 | 382 | 194 | 15 | 66 | 404 | 40 | 389 | 1.08e-31 | 127 |
| Msa0009340 | MtrunA17_Chr1g0157961 | 29.389 | 262 | 109 | 6 | 49 | 265 | 21 | 251 | 1.05e-27 | 111 |
| Msa0009340 | MtrunA17_Chr1g0158571 | 33.333 | 246 | 114 | 11 | 155 | 398 | 3 | 200 | 3.09e-19 | 89.7 |
| Msa0009340 | MtrunA17_Chr1g0158761 | 26.203 | 374 | 169 | 18 | 58 | 398 | 23 | 322 | 3.02e-18 | 87.0 |
| Msa0009340 | MtrunA17_Chr1g0158501 | 31.148 | 244 | 98 | 12 | 54 | 292 | 38 | 216 | 1.41e-17 | 82.0 |
| Msa0009340 | MtrunA17_Chr1g0158131 | 30.085 | 236 | 111 | 10 | 175 | 399 | 1 | 193 | 1.43e-14 | 75.1 |
| Msa0009340 | MtrunA17_Chr1g0157811 | 28.634 | 227 | 122 | 7 | 175 | 399 | 1 | 189 | 6.28e-14 | 73.6 |
| Msa0009340 | MtrunA17_Chr1g0158751 | 54.386 | 57 | 25 | 1 | 342 | 398 | 28 | 83 | 8.67e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 135 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTTGCCCAACATCTTTA+TGG | 0.125778 | 1_1:+13631649 | None:intergenic |
| ACCAATGTGGTGCGACTTAT+TGG | 0.158858 | 1_1:-13631563 | Msa0009340:three_prime_UTR |
| GCTATAGACATCGGCCTTAT+AGG | 0.215801 | 1_1:+13631178 | None:intergenic |
| CTCTTTGTATGAATACTAAT+TGG | 0.215941 | 1_1:+13631766 | None:intergenic |
| CTTCTCTGGTAAGTTTGATA+TGG | 0.216881 | 1_1:+13634513 | None:intergenic |
| AGAAAGGGAGATAGAAATAT+TGG | 0.250832 | 1_1:-13631046 | Msa0009340:three_prime_UTR |
| GTTGGATATGGAGAAGGTTT+TGG | 0.250877 | 1_1:+13630877 | None:intergenic |
| TGAATAATTTCAGTTGGATA+TGG | 0.257114 | 1_1:+13630865 | None:intergenic |
| TGGGTGGATTTGAAGTTTCT+TGG | 0.282960 | 1_1:-13634077 | Msa0009340:CDS |
| GTAGCACTACTGCTATAATT+TGG | 0.308493 | 1_1:+13634878 | None:intergenic |
| TTAGGACTCATAGCTCTCTT+TGG | 0.321177 | 1_1:-13631871 | Msa0009340:CDS |
| GCTTATAAGTTAAGGAAATA+TGG | 0.323482 | 1_1:+13631453 | None:intergenic |
| ATTGACATAGGAAGAATAAT+TGG | 0.324394 | 1_1:-13631934 | Msa0009340:CDS |
| GGATCATCCTTAAGTCTAAA+AGG | 0.324467 | 1_1:+13634755 | None:intergenic |
| ATCCAATAGGAAAGAAAATT+TGG | 0.329606 | 1_1:+13631087 | None:intergenic |
| TATTGGTAAAGTTTCCTATA+AGG | 0.337822 | 1_1:-13631192 | Msa0009340:three_prime_UTR |
| GGCCATGTTTATGCCATTGC+TGG | 0.338613 | 1_1:-13634312 | Msa0009340:CDS |
| GATAATAAATACTTGTGATT+TGG | 0.345416 | 1_1:-13630729 | Msa0009340:three_prime_UTR |
| GTACATTTGCTTATAAGTTA+AGG | 0.350525 | 1_1:+13631445 | None:intergenic |
| TAGCTTTGGAATGCTCTTGA+TGG | 0.358695 | 1_1:-13631159 | Msa0009340:three_prime_UTR |
| TTGATTACAGTGAAATTCAT+AGG | 0.361521 | 1_1:-13634107 | Msa0009340:CDS |
| AAGGGTACATGTGTGTAAAA+TGG | 0.381308 | 1_1:+13634985 | None:intergenic |
| ATTATGATTAGATTTATGTT+AGG | 0.388857 | 1_1:-13631889 | Msa0009340:CDS |
| TAATTCATTGTAAATCCAAT+AGG | 0.389630 | 1_1:+13631074 | None:intergenic |
| AAGTTGGGTGAAGGAGGATA+TGG | 0.391135 | 1_1:-13631713 | Msa0009340:three_prime_UTR |
| CTCAGTAAAACTAATTGAAC+CGG | 0.396071 | 1_1:+13630795 | None:intergenic |
| AAGACCAAAGTCTGAAACTT+TGG | 0.400782 | 1_1:+13631307 | None:intergenic |
| CAATGAATTAATTGAAGAAA+GGG | 0.403350 | 1_1:-13631061 | Msa0009340:three_prime_UTR |
| ATCGCCAAAGTTTCAGACTT+TGG | 0.404307 | 1_1:-13631311 | Msa0009340:three_prime_UTR |
| AAAGCTTCGCAGTGGGCCTT+TGG | 0.404548 | 1_1:-13631675 | Msa0009340:three_prime_UTR |
| AAGAAGGTGGACAGAATGTT+TGG | 0.406346 | 1_1:+13634807 | None:intergenic |
| AGATGTTTATAATTGCTCTA+TGG | 0.409884 | 1_1:-13630987 | Msa0009340:three_prime_UTR |
| ACAATGAATTAATTGAAGAA+AGG | 0.414415 | 1_1:-13631062 | Msa0009340:three_prime_UTR |
| TCTATTACTCTGTCCATTGA+AGG | 0.417323 | 1_1:+13630937 | None:intergenic |
| TGCCATTGCTGGGGATTTGA+AGG | 0.417946 | 1_1:-13634301 | Msa0009340:CDS |
| AAGGCCGATGTCTATAGCTT+TGG | 0.429228 | 1_1:-13631173 | Msa0009340:three_prime_UTR |
| TAGTATCAACTATTCTTCTC+TGG | 0.432039 | 1_1:+13634499 | None:intergenic |
| AAATGCAGAAGCACTTACTT+TGG | 0.436462 | 1_1:-13634466 | Msa0009340:CDS |
| GAGAATATACGATGGAGCTC+AGG | 0.441879 | 1_1:-13631980 | Msa0009340:CDS |
| GTTTATGATTTCATGCCAAA+TGG | 0.452314 | 1_1:-13631509 | Msa0009340:three_prime_UTR |
| ACTGCTGCAAGAGGAACAAT+TGG | 0.454157 | 1_1:-13631245 | Msa0009340:three_prime_UTR |
| GTTACAATGCTATTGTCAAC+TGG | 0.454251 | 1_1:+13631272 | None:intergenic |
| GCCATGTTTATGCCATTGCT+GGG | 0.454645 | 1_1:-13634311 | Msa0009340:CDS |
| GGTGCTTGTGAAGATCTTTG+TGG | 0.455445 | 1_1:-13634048 | Msa0009340:CDS |
| GAAAGGGAGATAGAAATATT+GGG | 0.458363 | 1_1:-13631045 | Msa0009340:three_prime_UTR |
| CAAATGTACGAGATATCTCT+TGG | 0.461264 | 1_1:-13631431 | Msa0009340:three_prime_UTR |
| GAAGCTGCATCTGCGTAGAC+TGG | 0.461732 | 1_1:+13634363 | None:intergenic |
| TCAGGACTACTGCATGCAAT+AGG | 0.463697 | 1_1:-13632006 | Msa0009340:intron |
| AGCCCGTGTATAACAACATT+GGG | 0.464231 | 1_1:-13633967 | Msa0009340:CDS |
| AAACAGAAAGGTAATGGAAA+TGG | 0.466166 | 1_1:-13631632 | Msa0009340:three_prime_UTR |
| TCCTAGTGATCGTCCTTCAA+TGG | 0.472837 | 1_1:-13630950 | Msa0009340:three_prime_UTR |
| TTGGTAGCCATAAAGATGTT+GGG | 0.479386 | 1_1:-13631656 | Msa0009340:three_prime_UTR |
| GTTGTTATACACGGGCTTGA+CGG | 0.480948 | 1_1:+13633973 | None:intergenic |
| TTTGAAGTTTCTTGGATGAC+TGG | 0.483007 | 1_1:-13634069 | Msa0009340:CDS |
| TTGGGCAAACAGAAAGGTAA+TGG | 0.485119 | 1_1:-13631638 | Msa0009340:three_prime_UTR |
| TTATCTTGAATAATTTCAGT+TGG | 0.487374 | 1_1:+13630859 | None:intergenic |
| TTTGGTAGCCATAAAGATGT+TGG | 0.489526 | 1_1:-13631657 | Msa0009340:three_prime_UTR |
| GGAATTGCTTATTTGCATCA+AGG | 0.493916 | 1_1:-13631398 | Msa0009340:three_prime_UTR |
| TTTCTTGCAGGTATTATGTA+CGG | 0.501921 | 1_1:-13632161 | Msa0009340:intron |
| GGTGTGATGTATCTTTCCTA+TGG | 0.503418 | 1_1:+13631583 | None:intergenic |
| TACTGCTATAATTTGGAGTA+AGG | 0.508466 | 1_1:+13634885 | None:intergenic |
| ACAAACATTCGCAGCTTCGA+TGG | 0.509625 | 1_1:+13633565 | None:intergenic |
| ATTAGTGAAGTTGCAACCAT+AGG | 0.509889 | 1_1:-13631599 | Msa0009340:three_prime_UTR |
| AAGGAAAAGTTGGGTGAAGG+AGG | 0.510378 | 1_1:-13631719 | Msa0009340:three_prime_UTR |
| TATCTATCAAGAGAGCCATT+TGG | 0.511391 | 1_1:+13631494 | None:intergenic |
| TCTTGATGGAAATAGCAAAC+AGG | 0.513450 | 1_1:-13631145 | Msa0009340:three_prime_UTR |
| AGGATATGGTAAGGTTTACA+AGG | 0.517674 | 1_1:-13631699 | Msa0009340:three_prime_UTR |
| CCTCGGAGCTGTAATTATAA+CGG | 0.519152 | 1_1:+13634220 | None:intergenic |
| ATTTCAGTTGGATATGGAGA+AGG | 0.522815 | 1_1:+13630871 | None:intergenic |
| GGAAATATGGTCTTCTCTAG+TGG | 0.525250 | 1_1:+13631466 | None:intergenic |
| AATTCATGTAAATTACGTGC+TGG | 0.527621 | 1_1:+13634409 | None:intergenic |
| TTGTCAAGAAGTATGTTATG+AGG | 0.529981 | 1_1:+13631341 | None:intergenic |
| TCTAAACTTGGTATTGACAT+AGG | 0.530027 | 1_1:-13631946 | Msa0009340:CDS |
| TTTAAGGAAAAGTTGGGTGA+AGG | 0.530226 | 1_1:-13631722 | Msa0009340:three_prime_UTR |
| ATGTACGAAAACTTTCCATC+GGG | 0.531350 | 1_1:+13634186 | None:intergenic |
| ATCGGGAGTATTCCACTCCT+CGG | 0.533501 | 1_1:+13634203 | None:intergenic |
| TTTCTCTCAAATAGCAATCT+CGG | 0.546008 | 1_1:+13634022 | None:intergenic |
| TACAAGGGAAAGCTTCGCAG+TGG | 0.555759 | 1_1:-13631683 | Msa0009340:three_prime_UTR |
| TCCAATAAGTCGCACCACAT+TGG | 0.558837 | 1_1:+13631562 | None:intergenic |
| AAGATGTTGGGCAAACAGAA+AGG | 0.559740 | 1_1:-13631644 | Msa0009340:three_prime_UTR |
| CTTGGATCACCACATGATGT+TGG | 0.562785 | 1_1:+13634734 | None:intergenic |
| AAGAGGAACAATTGGTTACA+TGG | 0.564394 | 1_1:-13631237 | Msa0009340:three_prime_UTR |
| ATATAGTAAAGGATCTTCTA+CGG | 0.565577 | 1_1:+13630768 | None:intergenic |
| GGTGTTACTGAATCTAAACT+TGG | 0.566423 | 1_1:-13631958 | Msa0009340:CDS |
| GGGTGAAGGAGGATATGGTA+AGG | 0.569522 | 1_1:-13631708 | Msa0009340:three_prime_UTR |
| TTATCAGATGATGATGTCAC+CGG | 0.569742 | 1_1:-13630814 | Msa0009340:three_prime_UTR |
| CAGTGAAATTCATAGGATGT+TGG | 0.570931 | 1_1:-13634100 | Msa0009340:CDS |
| ATCCCAATGTTGTTATACAC+GGG | 0.571733 | 1_1:+13633965 | None:intergenic |
| AGTTTAGTACTATATAGTAA+AGG | 0.573015 | 1_1:+13630757 | None:intergenic |
| TTCTGTCCACCTTCTTCATG+CGG | 0.574547 | 1_1:-13634800 | Msa0009340:CDS |
| GCTATTTGAGAGAAACCACT+TGG | 0.577166 | 1_1:-13634014 | Msa0009340:CDS |
| CCCCAGCAATGGCATAAACA+TGG | 0.580226 | 1_1:+13634310 | None:intergenic |
| TGGAACATTTGTAATGATGT+AGG | 0.582107 | 1_1:+13634429 | None:intergenic |
| TATGAATACTAATTGGCATG+AGG | 0.583468 | 1_1:+13631773 | None:intergenic |
| AAGCCCGTGTATAACAACAT+TGG | 0.587908 | 1_1:-13633968 | Msa0009340:CDS |
| CATGTACGAAAACTTTCCAT+CGG | 0.589525 | 1_1:+13634185 | None:intergenic |
| GTAACTTTGACTGCTGCAAG+AGG | 0.591019 | 1_1:-13631254 | Msa0009340:three_prime_UTR |
| AGAATATACGATGGAGCTCA+GGG | 0.591716 | 1_1:-13631979 | Msa0009340:CDS |
| TCCATTGAAGGACGATCACT+AGG | 0.593054 | 1_1:+13630949 | None:intergenic |
| CAACATCATGTGGTGATCCA+AGG | 0.593071 | 1_1:-13634733 | Msa0009340:intron |
| AGAGTAATAGAAATGCTTGA+AGG | 0.594118 | 1_1:-13630925 | Msa0009340:three_prime_UTR |
| AACCTTCAAATCCCCAGCAA+TGG | 0.596842 | 1_1:+13634299 | None:intergenic |
| ATGAATACTAATTGGCATGA+GGG | 0.606212 | 1_1:+13631774 | None:intergenic |
| AATCCCAATGTTGTTATACA+CGG | 0.611384 | 1_1:+13633964 | None:intergenic |
| ATTGCATTCAAGACTCCAAG+TGG | 0.612946 | 1_1:+13633999 | None:intergenic |
| AACATCTTTATGGCTACCAA+AGG | 0.614361 | 1_1:+13631659 | None:intergenic |
| ATAATTACAGCTCCGAGGAG+TGG | 0.617845 | 1_1:-13634215 | Msa0009340:CDS |
| GAGATAAAGCAGATGACGAG+AGG | 0.618403 | 1_1:-13631746 | Msa0009340:exon |
| ATTCATAGGATGTTGGTGGG+TGG | 0.620524 | 1_1:-13634093 | Msa0009340:CDS |
| ACAAGGGAAAGCTTCGCAGT+GGG | 0.623696 | 1_1:-13631682 | Msa0009340:three_prime_UTR |
| TAGACTGGATCATCCCTCAC+AGG | 0.623749 | 1_1:+13634378 | None:intergenic |
| ATATCTCTTGGAGTTGCACG+TGG | 0.625272 | 1_1:-13631419 | Msa0009340:three_prime_UTR |
| ACATAGGAAGAATAATTGGA+AGG | 0.625740 | 1_1:-13631930 | Msa0009340:CDS |
| ATGAACAAGTCGAATTCTCA+AGG | 0.626361 | 1_1:-13634336 | Msa0009340:CDS |
| TGAAATTCATAGGATGTTGG+TGG | 0.630171 | 1_1:-13634097 | Msa0009340:CDS |
| AAGCTGCGAATGTTTGTCGA+AGG | 0.634048 | 1_1:-13633559 | Msa0009340:intron |
| GGATATGGTAAGGTTTACAA+GGG | 0.635977 | 1_1:-13631698 | Msa0009340:three_prime_UTR |
| AACATTCGCAGCTTCGATGG+AGG | 0.637847 | 1_1:+13633568 | None:intergenic |
| CCGTTATAATTACAGCTCCG+AGG | 0.638687 | 1_1:-13634220 | Msa0009340:CDS |
| AAGGATGATCCAACATCATG+TGG | 0.645557 | 1_1:-13634743 | Msa0009340:CDS |
| CATTCCAAAGCTATAGACAT+CGG | 0.648354 | 1_1:+13631169 | None:intergenic |
| CCATGTTTATGCCATTGCTG+GGG | 0.653515 | 1_1:-13634310 | Msa0009340:CDS |
| ACAACATTGGGATTTCACGT+CGG | 0.653686 | 1_1:-13633955 | Msa0009340:intron |
| TCAAAGAAAGTCAAGAACGA+TGG | 0.656872 | 1_1:-13635055 | Msa0009340:CDS |
| GAGGAGTGGAATACTCCCGA+TGG | 0.659381 | 1_1:-13634201 | Msa0009340:CDS |
| TGAATTGTAGCAGTCCTGTG+AGG | 0.669612 | 1_1:-13634392 | Msa0009340:CDS |
| ATTATGTACGGCATTGCCAG+AGG | 0.670447 | 1_1:-13632149 | Msa0009340:intron |
| GAATTGTAGCAGTCCTGTGA+GGG | 0.675490 | 1_1:-13634391 | Msa0009340:CDS |
| TCATACATATATATAGAACA+AGG | 0.689865 | 1_1:-13631843 | Msa0009340:CDS |
| ATTGGGAGAAGCTACCAATG+AGG | 0.690362 | 1_1:-13631028 | Msa0009340:three_prime_UTR |
| GAAATTCATAGGATGTTGGT+GGG | 0.698591 | 1_1:-13634096 | Msa0009340:CDS |
| TAAAGATGATGACTGTCACG+TGG | 0.718813 | 1_1:-13634268 | Msa0009340:CDS |
| AACAAGTCGAATTCTCAAGG+TGG | 0.727769 | 1_1:-13634333 | Msa0009340:CDS |
| ATAGGTGTGAGAATATACGA+TGG | 0.730533 | 1_1:-13631988 | Msa0009340:CDS |
| AAAGATACATCACACCAATG+TGG | 0.733353 | 1_1:-13631576 | Msa0009340:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCATTTTTATAATAACTT+GGG | + | chr1_1:13631572-13631591 | None:intergenic | 10.0% |
| !!! | AAAAATTTCGATTTTAAAAT+AGG | + | chr1_1:13631857-13631876 | None:intergenic | 10.0% |
| !!! | TATTTTAAAATCGAAATTTT+TGG | - | chr1_1:13631856-13631875 | Msa0009340:CDS | 10.0% |
| !! | AATTAAAATAAAGAAGTTAA+CGG | + | chr1_1:13632117-13632136 | None:intergenic | 10.0% |
| !!! | AACTTCTTTATTTTAATTTT+AGG | - | chr1_1:13632119-13632138 | Msa0009340:intron | 10.0% |
| !!! | TCTTTCTTTTTATTTTTATT+AGG | - | chr1_1:13633279-13633298 | Msa0009340:intron | 10.0% |
| !!! | TTTTATTTTCACAATATTTT+TGG | - | chr1_1:13633598-13633617 | Msa0009340:intron | 10.0% |
| !! | AATTACAAATAATATATTTC+AGG | - | chr1_1:13633696-13633715 | Msa0009340:intron | 10.0% |
| !!! | CATTCATTTTTATAATAACT+TGG | + | chr1_1:13631573-13631592 | None:intergenic | 15.0% |
| !! | CAAGTTATTATAAAAATGAA+TGG | - | chr1_1:13631571-13631590 | Msa0009340:three_prime_UTR | 15.0% |
| !! | TTATTATAAAAATGAATGGA+AGG | - | chr1_1:13631575-13631594 | Msa0009340:three_prime_UTR | 15.0% |
| !! | ATTCCTTATATAAAATTTCT+TGG | + | chr1_1:13631946-13631965 | None:intergenic | 15.0% |
| !! | AAAAAAATGTGTTAAATTAG+AGG | + | chr1_1:13632202-13632221 | None:intergenic | 15.0% |
| !! | ATAAAAAAATAGTGACATAA+GGG | + | chr1_1:13632282-13632301 | None:intergenic | 15.0% |
| !!! | TTTCATTTTCTTTTTTTACT+TGG | - | chr1_1:13632786-13632805 | Msa0009340:intron | 15.0% |
| !!! | TTAATAAAGTTTTTTGAGTT+TGG | - | chr1_1:13632856-13632875 | Msa0009340:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTGTACC+AGG | + | chr1_1:13632958-13632977 | None:intergenic | 15.0% |
| !! | GTAATATTGTATTTAGTAAT+TGG | - | chr1_1:13633358-13633377 | Msa0009340:intron | 15.0% |
| !! | ATTATAGAAACATAATACAA+TGG | + | chr1_1:13633431-13633450 | None:intergenic | 15.0% |
| !! | ATTATGATTAGATTTATGTT+AGG | - | chr1_1:13633831-13633850 | Msa0009340:intron | 15.0% |
| !! | TAATTGTATAAGTAATAGTG+AGG | + | chr1_1:13631150-13631169 | None:intergenic | 20.0% |
| !!! | TTATAACGGAAAAAAGATAT+CGG | + | chr1_1:13631489-13631508 | None:intergenic | 20.0% |
| !!! | AAAAGAAAATGTTGTTTACA+TGG | - | chr1_1:13632056-13632075 | Msa0009340:intron | 20.0% |
| !!! | AAAGAAAATGTTGTTTACAT+GGG | - | chr1_1:13632057-13632076 | Msa0009340:intron | 20.0% |
| !!! | ATTTTAATTTTAGGAGATTC+AGG | - | chr1_1:13632128-13632147 | Msa0009340:intron | 20.0% |
| !! | CATAAAAAAATAGTGACATA+AGG | + | chr1_1:13632283-13632302 | None:intergenic | 20.0% |
| !!! | GTTTTATTTGGATATAACAA+TGG | + | chr1_1:13632354-13632373 | None:intergenic | 20.0% |
| !! | ATCCAAATAAAACTAATTTC+TGG | - | chr1_1:13632361-13632380 | Msa0009340:intron | 20.0% |
| !!! | AACCAGAAATTAGTTTTATT+TGG | + | chr1_1:13632366-13632385 | None:intergenic | 20.0% |
| !! | AGAAAAATATATACAAGAGA+GGG | + | chr1_1:13632831-13632850 | None:intergenic | 20.0% |
| !!! | TATTTGTATCCATTTTTACT+TGG | + | chr1_1:13633155-13633174 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGGTTACAGTAT+TGG | + | chr1_1:13633471-13633490 | None:intergenic | 20.0% |
| !! | TCATACATATATATAGAACA+AGG | - | chr1_1:13633877-13633896 | Msa0009340:intron | 20.0% |
| !!! | ATATTTTTGTAGAACAATTC+TGG | + | chr1_1:13634511-13634530 | None:intergenic | 20.0% |
| !! | GAATTGTTCTACAAAAATAT+TGG | - | chr1_1:13634511-13634530 | Msa0009340:CDS | 20.0% |
| !! | TAATTCATTGTAAATCCAAT+AGG | + | chr1_1:13634649-13634668 | None:intergenic | 20.0% |
| !! | ACAATGAATTAATTGAAGAA+AGG | - | chr1_1:13634658-13634677 | Msa0009340:intron | 20.0% |
| !! | CAATGAATTAATTGAAGAAA+GGG | - | chr1_1:13634659-13634678 | Msa0009340:intron | 20.0% |
| !! | TTATCTTGAATAATTTCAGT+TGG | + | chr1_1:13634864-13634883 | None:intergenic | 20.0% |
| !! | AGTTTAGTACTATATAGTAA+AGG | + | chr1_1:13634966-13634985 | None:intergenic | 20.0% |
| !! | GATAATAAATACTTGTGATT+TGG | - | chr1_1:13634991-13635010 | Msa0009340:intron | 20.0% |
| ! | TAAGGGATTAAAATCTGAAA+GGG | + | chr1_1:13630756-13630775 | None:intergenic | 25.0% |
| ! | ACTACAATAACTACACAATT+CGG | - | chr1_1:13631082-13631101 | Msa0009340:three_prime_UTR | 25.0% |
| ! | TTGATTACAGTGAAATTCAT+AGG | - | chr1_1:13631613-13631632 | Msa0009340:three_prime_UTR | 25.0% |
| ! | TAAAGTTGTACTTACCAAAT+AGG | + | chr1_1:13631803-13631822 | None:intergenic | 25.0% |
| !! | TGGCCAAGAAATTTTATATA+AGG | - | chr1_1:13631940-13631959 | Msa0009340:CDS | 25.0% |
| ! | ATTTAGCCCAATAAAAAAAG+TGG | - | chr1_1:13632015-13632034 | Msa0009340:intron | 25.0% |
| ! | TTTAGCCCAATAAAAAAAGT+GGG | - | chr1_1:13632016-13632035 | Msa0009340:intron | 25.0% |
| !!! | AAACACCCACTTTTTTTATT+GGG | + | chr1_1:13632024-13632043 | None:intergenic | 25.0% |
| ! | TATTTGGATATAACAATGGT+CGG | + | chr1_1:13632350-13632369 | None:intergenic | 25.0% |
| !! | CATCAATTTTGTAACAAAAC+TGG | + | chr1_1:13632557-13632576 | None:intergenic | 25.0% |
| !!! | CAGTTTTGTTACAAAATTGA+TGG | - | chr1_1:13632555-13632574 | Msa0009340:intron | 25.0% |
| ! | AATAAATCAACCTGTAAATC+AGG | + | chr1_1:13632709-13632728 | None:intergenic | 25.0% |
| !!! | GATTTATTTATAGAGTGTTG+TGG | - | chr1_1:13632721-13632740 | Msa0009340:intron | 25.0% |
| !!! | TTTTTTTACTTGGAGTGTTT+TGG | - | chr1_1:13632796-13632815 | Msa0009340:intron | 25.0% |
| ! | GAAAAATATATACAAGAGAG+GGG | + | chr1_1:13632830-13632849 | None:intergenic | 25.0% |
| ! | GAGAAAAATATATACAAGAG+AGG | + | chr1_1:13632832-13632851 | None:intergenic | 25.0% |
| !! | TTTTGATGAAAATAGTAGAG+GGG | + | chr1_1:13633033-13633052 | None:intergenic | 25.0% |
| !! | CTTTTGATGAAAATAGTAGA+GGG | + | chr1_1:13633034-13633053 | None:intergenic | 25.0% |
| !!! | TATTGGCGACTTTTTTTTTT+TGG | + | chr1_1:13633483-13633502 | None:intergenic | 25.0% |
| !! | AATTGACACAAAAAGAGTAT+TGG | + | chr1_1:13633500-13633519 | None:intergenic | 25.0% |
| ! | ACTTCATTAAAATTTCTTGC+AGG | - | chr1_1:13633547-13633566 | Msa0009340:intron | 25.0% |
| ! | GTGAAAATAAAAATTACCTC+TGG | + | chr1_1:13633590-13633609 | None:intergenic | 25.0% |
| ! | ATTGACATAGGAAGAATAAT+TGG | - | chr1_1:13633786-13633805 | Msa0009340:intron | 25.0% |
| ! | CTCTTTGTATGAATACTAAT+TGG | + | chr1_1:13633957-13633976 | None:intergenic | 25.0% |
| ! | GCTTATAAGTTAAGGAAATA+TGG | + | chr1_1:13634270-13634289 | None:intergenic | 25.0% |
| ! | GTACATTTGCTTATAAGTTA+AGG | + | chr1_1:13634278-13634297 | None:intergenic | 25.0% |
| ! | TATTGGTAAAGTTTCCTATA+AGG | - | chr1_1:13634528-13634547 | Msa0009340:CDS | 25.0% |
| ! | ATCCAATAGGAAAGAAAATT+TGG | + | chr1_1:13634636-13634655 | None:intergenic | 25.0% |
| ! | AGATGTTTATAATTGCTCTA+TGG | - | chr1_1:13634733-13634752 | Msa0009340:intron | 25.0% |
| ! | TGAATAATTTCAGTTGGATA+TGG | + | chr1_1:13634858-13634877 | None:intergenic | 25.0% |
| ! | ATATAGTAAAGGATCTTCTA+CGG | + | chr1_1:13634955-13634974 | None:intergenic | 25.0% |
| CTAAGGGATTAAAATCTGAA+AGG | + | chr1_1:13630757-13630776 | None:intergenic | 30.0% | |
| ! | TACTGCTATAATTTGGAGTA+AGG | + | chr1_1:13630838-13630857 | None:intergenic | 30.0% |
| ! | ATCACATCCTTTTAGACTTA+AGG | - | chr1_1:13630958-13630977 | Msa0009340:three_prime_UTR | 30.0% |
| GTATAAGTAATAGTGAGGAA+TGG | + | chr1_1:13631145-13631164 | None:intergenic | 30.0% | |
| TAGTATCAACTATTCTTCTC+TGG | + | chr1_1:13631224-13631243 | None:intergenic | 30.0% | |
| TGGAACATTTGTAATGATGT+AGG | + | chr1_1:13631294-13631313 | None:intergenic | 30.0% | |
| AATTCATGTAAATTACGTGC+TGG | + | chr1_1:13631314-13631333 | None:intergenic | 30.0% | |
| TTTCTCTCAAATAGCAATCT+CGG | + | chr1_1:13631701-13631720 | None:intergenic | 30.0% | |
| AATCCCAATGTTGTTATACA+CGG | + | chr1_1:13631759-13631778 | None:intergenic | 30.0% | |
| TTGTACTTACCAAATAGGTA+AGG | + | chr1_1:13631798-13631817 | None:intergenic | 30.0% | |
| !!! | CAAACACCCACTTTTTTTAT+TGG | + | chr1_1:13632025-13632044 | None:intergenic | 30.0% |
| TGTTAACCACTTCGTTATAA+AGG | - | chr1_1:13632301-13632320 | Msa0009340:intron | 30.0% | |
| ATGTTAGCCATAAGTACATT+TGG | - | chr1_1:13632393-13632412 | Msa0009340:intron | 30.0% | |
| TGTTAGCCATAAGTACATTT+GGG | - | chr1_1:13632394-13632413 | Msa0009340:intron | 30.0% | |
| ! | TGATTTTCAAAAACGTTCGT+TGG | - | chr1_1:13632529-13632548 | Msa0009340:intron | 30.0% |
| ! | ATTTCTTCCCATATTTTTCG+AGG | - | chr1_1:13632608-13632627 | Msa0009340:intron | 30.0% |
| !!! | TTTTTTGAGTTTGGCAGTAT+AGG | - | chr1_1:13632865-13632884 | Msa0009340:intron | 30.0% |
| !!! | TTTTTTTTGTACCAGGAGTT+TGG | + | chr1_1:13632951-13632970 | None:intergenic | 30.0% |
| TTTGATGAAAATAGTAGAGG+GGG | + | chr1_1:13633032-13633051 | None:intergenic | 30.0% | |
| ! | GCTTTTGATGAAAATAGTAG+AGG | + | chr1_1:13633035-13633054 | None:intergenic | 30.0% |
| TCGAAACAACCAAGTAAAAA+TGG | - | chr1_1:13633143-13633162 | Msa0009340:intron | 30.0% | |
| !!! | GTAATTGGTTGCTTTTCTTT+TGG | - | chr1_1:13633373-13633392 | Msa0009340:intron | 30.0% |
| TTTCTTGCAGGTATTATGTA+CGG | - | chr1_1:13633559-13633578 | Msa0009340:intron | 30.0% | |
| !! | TCTAAACTTGGTATTGACAT+AGG | - | chr1_1:13633774-13633793 | Msa0009340:intron | 30.0% |
| ACATAGGAAGAATAATTGGA+AGG | - | chr1_1:13633790-13633809 | Msa0009340:intron | 30.0% | |
| ATGAATACTAATTGGCATGA+GGG | + | chr1_1:13633949-13633968 | None:intergenic | 30.0% | |
| TATGAATACTAATTGGCATG+AGG | + | chr1_1:13633950-13633969 | None:intergenic | 30.0% | |
| !!! | AGAGGTTTTAAGGAAAAGTT+GGG | - | chr1_1:13633992-13634011 | Msa0009340:CDS | 30.0% |
| !! | AAACAGAAAGGTAATGGAAA+TGG | - | chr1_1:13634088-13634107 | Msa0009340:CDS | 30.0% |
| ! | ACTTATTGGATTTTGTGTTG+AGG | - | chr1_1:13634171-13634190 | Msa0009340:CDS | 30.0% |
| ! | CTTATTGGATTTTGTGTTGA+GGG | - | chr1_1:13634172-13634191 | Msa0009340:CDS | 30.0% |
| GTTTATGATTTCATGCCAAA+TGG | - | chr1_1:13634211-13634230 | Msa0009340:CDS | 30.0% | |
| ! | TTGTCAAGAAGTATGTTATG+AGG | + | chr1_1:13634382-13634401 | None:intergenic | 30.0% |
| ! | GACCAAATTTTCTTTCCTAT+TGG | - | chr1_1:13634631-13634650 | Msa0009340:intron | 30.0% |
| AGAAAGGGAGATAGAAATAT+TGG | - | chr1_1:13634674-13634693 | Msa0009340:intron | 30.0% | |
| GAAAGGGAGATAGAAATATT+GGG | - | chr1_1:13634675-13634694 | Msa0009340:intron | 30.0% | |
| ! | CACATTTTTCTTTTCCTCAT+TGG | + | chr1_1:13634709-13634728 | None:intergenic | 30.0% |
| AGAGTAATAGAAATGCTTGA+AGG | - | chr1_1:13634795-13634814 | Msa0009340:CDS | 30.0% | |
| CTCAGTAAAACTAATTGAAC+CGG | + | chr1_1:13634928-13634947 | None:intergenic | 30.0% | |
| TCAAAGAAAGTCAAGAACGA+TGG | - | chr1_1:13630665-13630684 | Msa0009340:three_prime_UTR | 35.0% | |
| ! | AAGGGTACATGTGTGTAAAA+TGG | + | chr1_1:13630738-13630757 | None:intergenic | 35.0% |
| !!! | GGTTTTCACTTTAGAGCTAA+GGG | + | chr1_1:13630773-13630792 | None:intergenic | 35.0% |
| !!! | TGGTTTTCACTTTAGAGCTA+AGG | + | chr1_1:13630774-13630793 | None:intergenic | 35.0% |
| !! | ACATGATTGATGGTGAAAAC+TGG | + | chr1_1:13630794-13630813 | None:intergenic | 35.0% |
| ! | TTTTCTCTGCACATGATTGA+TGG | + | chr1_1:13630804-13630823 | None:intergenic | 35.0% |
| GTAGCACTACTGCTATAATT+TGG | + | chr1_1:13630845-13630864 | None:intergenic | 35.0% | |
| GGATCATCCTTAAGTCTAAA+AGG | + | chr1_1:13630968-13630987 | None:intergenic | 35.0% | |
| TCACAACTTAACTCTGTTGT+CGG | - | chr1_1:13631035-13631054 | Msa0009340:three_prime_UTR | 35.0% | |
| TAAGTAATAGTGAGGAATGG+TGG | + | chr1_1:13631142-13631161 | None:intergenic | 35.0% | |
| CTTCTCTGGTAAGTTTGATA+TGG | + | chr1_1:13631210-13631229 | None:intergenic | 35.0% | |
| !! | AAATGCAGAAGCACTTACTT+TGG | - | chr1_1:13631254-13631273 | Msa0009340:three_prime_UTR | 35.0% |
| ATGAACAAGTCGAATTCTCA+AGG | - | chr1_1:13631384-13631403 | Msa0009340:three_prime_UTR | 35.0% | |
| ATGTACGAAAACTTTCCATC+GGG | + | chr1_1:13631537-13631556 | None:intergenic | 35.0% | |
| CATGTACGAAAACTTTCCAT+CGG | + | chr1_1:13631538-13631557 | None:intergenic | 35.0% | |
| CAGTGAAATTCATAGGATGT+TGG | - | chr1_1:13631620-13631639 | Msa0009340:three_prime_UTR | 35.0% | |
| TGAAATTCATAGGATGTTGG+TGG | - | chr1_1:13631623-13631642 | Msa0009340:three_prime_UTR | 35.0% | |
| GAAATTCATAGGATGTTGGT+GGG | - | chr1_1:13631624-13631643 | Msa0009340:three_prime_UTR | 35.0% | |
| ! | TTTGAAGTTTCTTGGATGAC+TGG | - | chr1_1:13631651-13631670 | Msa0009340:three_prime_UTR | 35.0% |
| ATCCCAATGTTGTTATACAC+GGG | + | chr1_1:13631758-13631777 | None:intergenic | 35.0% | |
| TACTTACCAAATAGGTAAGG+TGG | + | chr1_1:13631795-13631814 | None:intergenic | 35.0% | |
| TGCGGTAAAAAAGATGGTTT+GGG | + | chr1_1:13631906-13631925 | None:intergenic | 35.0% | |
| TTGCGGTAAAAAAGATGGTT+TGG | + | chr1_1:13631907-13631926 | None:intergenic | 35.0% | |
| AACCACTTCGTTATAAAGGT+AGG | - | chr1_1:13632305-13632324 | Msa0009340:intron | 35.0% | |
| ATAAAGGTAGGAGATTCACT+TGG | - | chr1_1:13632317-13632336 | Msa0009340:intron | 35.0% | |
| GAGATTCCCAAATGTACTTA+TGG | + | chr1_1:13632403-13632422 | None:intergenic | 35.0% | |
| ! | GTTTTTCACGCTGAAATTCA+TGG | - | chr1_1:13632427-13632446 | Msa0009340:intron | 35.0% |
| !!! | TCATGGTTTTATTCTTGCTC+TGG | - | chr1_1:13632444-13632463 | Msa0009340:intron | 35.0% |
| ATAAGTTTCTCCACCCATAT+GGG | + | chr1_1:13632479-13632498 | None:intergenic | 35.0% | |
| TGGCATAACGCTTGTAATTT+AGG | - | chr1_1:13632575-13632594 | Msa0009340:intron | 35.0% | |
| GGCATAACGCTTGTAATTTA+GGG | - | chr1_1:13632576-13632595 | Msa0009340:intron | 35.0% | |
| GTTACCTCCTCGAAAAATAT+GGG | + | chr1_1:13632618-13632637 | None:intergenic | 35.0% | |
| AAATCAACCTGTAAATCAGG+AGG | + | chr1_1:13632706-13632725 | None:intergenic | 35.0% | |
| TTGTGCTAATAGGCTTTCTA+TGG | - | chr1_1:13633210-13633229 | Msa0009340:intron | 35.0% | |
| CTAATAGGCTTTCTATGGTT+TGG | - | chr1_1:13633215-13633234 | Msa0009340:intron | 35.0% | |
| ! | CTGTTTTCCTTTTGTCTCAT+GGG | - | chr1_1:13633307-13633326 | Msa0009340:intron | 35.0% |
| GTTGGATTGTTCTACAAAAC+TGG | - | chr1_1:13633329-13633348 | Msa0009340:intron | 35.0% | |
| ATAGGTGTGAGAATATACGA+TGG | - | chr1_1:13633732-13633751 | Msa0009340:intron | 35.0% | |
| !! | GGTGTTACTGAATCTAAACT+TGG | - | chr1_1:13633762-13633781 | Msa0009340:intron | 35.0% |
| ! | AACATCGAAGATTTTCTGCA+AGG | - | chr1_1:13633918-13633937 | Msa0009340:intron | 35.0% |
| !!! | GAGAGGTTTTAAGGAAAAGT+TGG | - | chr1_1:13633991-13634010 | Msa0009340:CDS | 35.0% |
| TTTAAGGAAAAGTTGGGTGA+AGG | - | chr1_1:13633998-13634017 | Msa0009340:CDS | 35.0% | |
| AGGATATGGTAAGGTTTACA+AGG | - | chr1_1:13634021-13634040 | Msa0009340:CDS | 35.0% | |
| GGATATGGTAAGGTTTACAA+GGG | - | chr1_1:13634022-13634041 | Msa0009340:CDS | 35.0% | |
| AACATCTTTATGGCTACCAA+AGG | + | chr1_1:13634064-13634083 | None:intergenic | 35.0% | |
| ! | TTTGGTAGCCATAAAGATGT+TGG | - | chr1_1:13634063-13634082 | Msa0009340:CDS | 35.0% |
| ! | TTGGTAGCCATAAAGATGTT+GGG | - | chr1_1:13634064-13634083 | Msa0009340:CDS | 35.0% |
| ATTAGTGAAGTTGCAACCAT+AGG | - | chr1_1:13634121-13634140 | Msa0009340:CDS | 35.0% | |
| AAAGATACATCACACCAATG+TGG | - | chr1_1:13634144-13634163 | Msa0009340:CDS | 35.0% | |
| TATCTATCAAGAGAGCCATT+TGG | + | chr1_1:13634229-13634248 | None:intergenic | 35.0% | |
| CAAATGTACGAGATATCTCT+TGG | - | chr1_1:13634289-13634308 | Msa0009340:CDS | 35.0% | |
| GGAATTGCTTATTTGCATCA+AGG | - | chr1_1:13634322-13634341 | Msa0009340:CDS | 35.0% | |
| ! | AAGACCAAAGTCTGAAACTT+TGG | + | chr1_1:13634416-13634435 | None:intergenic | 35.0% |
| GTTACAATGCTATTGTCAAC+TGG | + | chr1_1:13634451-13634470 | None:intergenic | 35.0% | |
| AAGAGGAACAATTGGTTACA+TGG | - | chr1_1:13634483-13634502 | Msa0009340:CDS | 35.0% | |
| CATTCCAAAGCTATAGACAT+CGG | + | chr1_1:13634554-13634573 | None:intergenic | 35.0% | |
| TCTTGATGGAAATAGCAAAC+AGG | - | chr1_1:13634575-13634594 | Msa0009340:intron | 35.0% | |
| TCTATTACTCTGTCCATTGA+AGG | + | chr1_1:13634786-13634805 | None:intergenic | 35.0% | |
| ATTTCAGTTGGATATGGAGA+AGG | + | chr1_1:13634852-13634871 | None:intergenic | 35.0% | |
| ! | TTATCAGATGATGATGTCAC+CGG | - | chr1_1:13634906-13634925 | Msa0009340:intron | 35.0% |
| !!! | CGGTTCAATTAGTTTTACTG+AGG | - | chr1_1:13634926-13634945 | Msa0009340:intron | 35.0% |
| AAGAAGGTGGACAGAATGTT+TGG | + | chr1_1:13630916-13630935 | None:intergenic | 40.0% | |
| ! | ATTTTTCCGCATGAAGAAGG+TGG | + | chr1_1:13630929-13630948 | None:intergenic | 40.0% |
| ! | GTGATTTTTCCGCATGAAGA+AGG | + | chr1_1:13630932-13630951 | None:intergenic | 40.0% |
| AAGGATGATCCAACATCATG+TGG | - | chr1_1:13630977-13630996 | Msa0009340:three_prime_UTR | 40.0% | |
| !!! | AGTTGTGATGTTGTTTTCGC+AGG | + | chr1_1:13631023-13631042 | None:intergenic | 40.0% |
| CACAACTTAACTCTGTTGTC+GGG | - | chr1_1:13631036-13631055 | Msa0009340:three_prime_UTR | 40.0% | |
| ! | ACAATTCGGTTAGTTGATCC+CGG | - | chr1_1:13631096-13631115 | Msa0009340:three_prime_UTR | 40.0% |
| CAATCACCTTCTTCAATTCC+GGG | + | chr1_1:13631117-13631136 | None:intergenic | 40.0% | |
| GCAATCACCTTCTTCAATTC+CGG | + | chr1_1:13631118-13631137 | None:intergenic | 40.0% | |
| AGCATCGTAGATATAAGAGC+TGG | + | chr1_1:13631181-13631200 | None:intergenic | 40.0% | |
| AACAAGTCGAATTCTCAAGG+TGG | - | chr1_1:13631387-13631406 | Msa0009340:three_prime_UTR | 40.0% | |
| TAAAGATGATGACTGTCACG+TGG | - | chr1_1:13631452-13631471 | Msa0009340:three_prime_UTR | 40.0% | |
| CCTCGGAGCTGTAATTATAA+CGG | + | chr1_1:13631503-13631522 | None:intergenic | 40.0% | |
| ! | CGATGGAAAGTTTTCGTACA+TGG | - | chr1_1:13631536-13631555 | Msa0009340:three_prime_UTR | 40.0% |
| ! | TGGGTGGATTTGAAGTTTCT+TGG | - | chr1_1:13631643-13631662 | Msa0009340:three_prime_UTR | 40.0% |
| GCTATTTGAGAGAAACCACT+TGG | - | chr1_1:13631706-13631725 | Msa0009340:three_prime_UTR | 40.0% | |
| ATTGCATTCAAGACTCCAAG+TGG | + | chr1_1:13631724-13631743 | None:intergenic | 40.0% | |
| AAGCCCGTGTATAACAACAT+TGG | - | chr1_1:13631752-13631771 | Msa0009340:exon | 40.0% | |
| AGCCCGTGTATAACAACATT+GGG | - | chr1_1:13631753-13631772 | Msa0009340:exon | 40.0% | |
| ACAACATTGGGATTTCACGT+CGG | - | chr1_1:13631765-13631784 | Msa0009340:CDS | 40.0% | |
| TCCTCAAGTATCCACAACTT+TGG | - | chr1_1:13631879-13631898 | Msa0009340:CDS | 40.0% | |
| ACCAAAGTTGTGGATACTTG+AGG | + | chr1_1:13631883-13631902 | None:intergenic | 40.0% | |
| GTTAACGGCTTAACTCTCAA+AGG | + | chr1_1:13632102-13632121 | None:intergenic | 40.0% | |
| CTCCTACCTTTATAACGAAG+TGG | + | chr1_1:13632310-13632329 | None:intergenic | 40.0% | |
| TGGATATAACAATGGTCGGA+GGG | + | chr1_1:13632346-13632365 | None:intergenic | 40.0% | |
| TTGGATATAACAATGGTCGG+AGG | + | chr1_1:13632347-13632366 | None:intergenic | 40.0% | |
| CATAAGTTTCTCCACCCATA+TGG | + | chr1_1:13632480-13632499 | None:intergenic | 40.0% | |
| ! | GAAAATCATCAGAGCACTAG+TGG | + | chr1_1:13632517-13632536 | None:intergenic | 40.0% |
| !!! | TCTTCCCATATTTTTCGAGG+AGG | - | chr1_1:13632611-13632630 | Msa0009340:intron | 40.0% |
| GGTTACCTCCTCGAAAAATA+TGG | + | chr1_1:13632619-13632638 | None:intergenic | 40.0% | |
| !! | CACAGATATGTTGGCTTCTA+TGG | - | chr1_1:13632643-13632662 | Msa0009340:intron | 40.0% |
| TTCTATGGTCATTCGATCCA+GGG | - | chr1_1:13632658-13632677 | Msa0009340:intron | 40.0% | |
| GCCTAGATACAGGTTTCATT+AGG | - | chr1_1:13632747-13632766 | Msa0009340:intron | 40.0% | |
| GCCTAATGAAACCTGTATCT+AGG | + | chr1_1:13632751-13632770 | None:intergenic | 40.0% | |
| TTGAGTTTGGCAGTATAGGA+TGG | - | chr1_1:13632869-13632888 | Msa0009340:intron | 40.0% | |
| TGAGTTTGGCAGTATAGGAT+GGG | - | chr1_1:13632870-13632889 | Msa0009340:intron | 40.0% | |
| GAGTTTGGACATTCATCAAG+GGG | + | chr1_1:13632936-13632955 | None:intergenic | 40.0% | |
| GGAGTTTGGACATTCATCAA+GGG | + | chr1_1:13632937-13632956 | None:intergenic | 40.0% | |
| AGGAGTTTGGACATTCATCA+AGG | + | chr1_1:13632938-13632957 | None:intergenic | 40.0% | |
| TTGATGAATGTCCAAACTCC+TGG | - | chr1_1:13632937-13632956 | Msa0009340:intron | 40.0% | |
| CTTCAGAGGTTTGTGCTAAT+AGG | - | chr1_1:13633200-13633219 | Msa0009340:intron | 40.0% | |
| CGTTATAAGACTGTGAGACT+AGG | - | chr1_1:13633249-13633268 | Msa0009340:intron | 40.0% | |
| !! | GCTGTTTTCCTTTTGTCTCA+TGG | - | chr1_1:13633306-13633325 | Msa0009340:intron | 40.0% |
| ! | TTTCCTTTTGTCTCATGGGT+TGG | - | chr1_1:13633311-13633330 | Msa0009340:intron | 40.0% |
| AATCCAACCCATGAGACAAA+AGG | + | chr1_1:13633317-13633336 | None:intergenic | 40.0% | |
| AGAATATACGATGGAGCTCA+GGG | - | chr1_1:13633741-13633760 | Msa0009340:intron | 40.0% | |
| TTAGGACTCATAGCTCTCTT+TGG | - | chr1_1:13633849-13633868 | Msa0009340:intron | 40.0% | |
| CTGTTTGCCCAACATCTTTA+TGG | + | chr1_1:13634074-13634093 | None:intergenic | 40.0% | |
| AAGATGTTGGGCAAACAGAA+AGG | - | chr1_1:13634076-13634095 | Msa0009340:CDS | 40.0% | |
| TTGGGCAAACAGAAAGGTAA+TGG | - | chr1_1:13634082-13634101 | Msa0009340:CDS | 40.0% | |
| GGTGTGATGTATCTTTCCTA+TGG | + | chr1_1:13634140-13634159 | None:intergenic | 40.0% | |
| GGAAATATGGTCTTCTCTAG+TGG | + | chr1_1:13634257-13634276 | None:intergenic | 40.0% | |
| ATCGCCAAAGTTTCAGACTT+TGG | - | chr1_1:13634409-13634428 | Msa0009340:CDS | 40.0% | |
| !! | TAGCTTTGGAATGCTCTTGA+TGG | - | chr1_1:13634561-13634580 | Msa0009340:intron | 40.0% |
| ! | GTTGGATATGGAGAAGGTTT+TGG | + | chr1_1:13634846-13634865 | None:intergenic | 40.0% |
| TTCTGTCCACCTTCTTCATG+CGG | - | chr1_1:13630920-13630939 | Msa0009340:three_prime_UTR | 45.0% | |
| CTTGGATCACCACATGATGT+TGG | + | chr1_1:13630989-13631008 | None:intergenic | 45.0% | |
| CAACATCATGTGGTGATCCA+AGG | - | chr1_1:13630987-13631006 | Msa0009340:three_prime_UTR | 45.0% | |
| GTTGATCCCGGAATTGAAGA+AGG | - | chr1_1:13631108-13631127 | Msa0009340:three_prime_UTR | 45.0% | |
| TGAATTGTAGCAGTCCTGTG+AGG | - | chr1_1:13631328-13631347 | Msa0009340:three_prime_UTR | 45.0% | |
| GAATTGTAGCAGTCCTGTGA+GGG | - | chr1_1:13631329-13631348 | Msa0009340:three_prime_UTR | 45.0% | |
| GCCATGTTTATGCCATTGCT+GGG | - | chr1_1:13631409-13631428 | Msa0009340:three_prime_UTR | 45.0% | |
| CCATGTTTATGCCATTGCTG+GGG | - | chr1_1:13631410-13631429 | Msa0009340:three_prime_UTR | 45.0% | |
| AACCTTCAAATCCCCAGCAA+TGG | + | chr1_1:13631424-13631443 | None:intergenic | 45.0% | |
| CCGTTATAATTACAGCTCCG+AGG | - | chr1_1:13631500-13631519 | Msa0009340:three_prime_UTR | 45.0% | |
| ATAATTACAGCTCCGAGGAG+TGG | - | chr1_1:13631505-13631524 | Msa0009340:three_prime_UTR | 45.0% | |
| ! | ATTCATAGGATGTTGGTGGG+TGG | - | chr1_1:13631627-13631646 | Msa0009340:three_prime_UTR | 45.0% |
| GGTGCTTGTGAAGATCTTTG+TGG | - | chr1_1:13631672-13631691 | Msa0009340:three_prime_UTR | 45.0% | |
| GTTGTTATACACGGGCTTGA+CGG | + | chr1_1:13631750-13631769 | None:intergenic | 45.0% | |
| GGTTGTCCACCTTACCTATT+TGG | - | chr1_1:13631786-13631805 | Msa0009340:CDS | 45.0% | |
| ! | ATGGTTTGGGACCAAAGTTG+TGG | + | chr1_1:13631893-13631912 | None:intergenic | 45.0% |
| CCACGTTGCGGTAAAAAAGA+TGG | + | chr1_1:13631912-13631931 | None:intergenic | 45.0% | |
| !!! | CCATCTTTTTTACCGCAACG+TGG | - | chr1_1:13631909-13631928 | Msa0009340:CDS | 45.0% |
| !! | ACCGCAACGTGGTTGATTTT+TGG | - | chr1_1:13631920-13631939 | Msa0009340:CDS | 45.0% |
| GCCAAAAATCAACCACGTTG+CGG | + | chr1_1:13631924-13631943 | None:intergenic | 45.0% | |
| AACGGCTTAACTCTCAAAGG+TGG | + | chr1_1:13632099-13632118 | None:intergenic | 45.0% | |
| ACAAACATTCGCAGCTTCGA+TGG | + | chr1_1:13632158-13632177 | None:intergenic | 45.0% | |
| AAGCTGCGAATGTTTGTCGA+AGG | - | chr1_1:13632161-13632180 | Msa0009340:intron | 45.0% | |
| GCGAATGTTTGTCGAAGGTA+AGG | - | chr1_1:13632166-13632185 | Msa0009340:intron | 45.0% | |
| ! | TCTGGAGTATGCTACCCATA+TGG | - | chr1_1:13632462-13632481 | Msa0009340:intron | 45.0% |
| CTGGAGTATGCTACCCATAT+GGG | - | chr1_1:13632463-13632482 | Msa0009340:intron | 45.0% | |
| TAACCGCTGCACAGATATGT+TGG | - | chr1_1:13632634-13632653 | Msa0009340:intron | 45.0% | |
| AAGCCAACATATCTGTGCAG+CGG | + | chr1_1:13632640-13632659 | None:intergenic | 45.0% | |
| CTTCTATGGTCATTCGATCC+AGG | - | chr1_1:13632657-13632676 | Msa0009340:intron | 45.0% | |
| GTTGTGGTATGCCTAGATAC+AGG | - | chr1_1:13632737-13632756 | Msa0009340:intron | 45.0% | |
| TATACAAGAGAGGGGAGACT+AGG | + | chr1_1:13632822-13632841 | None:intergenic | 45.0% | |
| GAGTTTGGCAGTATAGGATG+GGG | - | chr1_1:13632871-13632890 | Msa0009340:intron | 45.0% | |
| AGTTTGGCAGTATAGGATGG+GGG | - | chr1_1:13632872-13632891 | Msa0009340:intron | 45.0% | |
| TATAGGATGGGGGTTCATCT+GGG | - | chr1_1:13632882-13632901 | Msa0009340:intron | 45.0% | |
| ATCTGGGTGTCAACCTAGTT+GGG | - | chr1_1:13632898-13632917 | Msa0009340:intron | 45.0% | |
| GAAGCAACGATATCCCAACT+AGG | + | chr1_1:13632914-13632933 | None:intergenic | 45.0% | |
| TCGGTGCGGAAAAAACATAC+TGG | + | chr1_1:13633118-13633137 | None:intergenic | 45.0% | |
| ! | CTTGGTTGTTTCGACGTAGT+CGG | + | chr1_1:13633137-13633156 | None:intergenic | 45.0% |
| AAGCATGGGTACTCTGAACA+TGG | + | chr1_1:13633183-13633202 | None:intergenic | 45.0% | |
| !! | AGCACAAACCTCTGAAGCAT+GGG | + | chr1_1:13633197-13633216 | None:intergenic | 45.0% |
| !! | TAGCACAAACCTCTGAAGCA+TGG | + | chr1_1:13633198-13633217 | None:intergenic | 45.0% |
| ATTATGTACGGCATTGCCAG+AGG | - | chr1_1:13633571-13633590 | Msa0009340:CDS | 45.0% | |
| TCAGGACTACTGCATGCAAT+AGG | - | chr1_1:13633714-13633733 | Msa0009340:intron | 45.0% | |
| GAGAATATACGATGGAGCTC+AGG | - | chr1_1:13633740-13633759 | Msa0009340:intron | 45.0% | |
| GAGATAAAGCAGATGACGAG+AGG | - | chr1_1:13633974-13633993 | Msa0009340:CDS | 45.0% | |
| ! | GCAGATGACGAGAGGTTTTA+AGG | - | chr1_1:13633982-13634001 | Msa0009340:CDS | 45.0% |
| AAGGAAAAGTTGGGTGAAGG+AGG | - | chr1_1:13634001-13634020 | Msa0009340:CDS | 45.0% | |
| AAGTTGGGTGAAGGAGGATA+TGG | - | chr1_1:13634007-13634026 | Msa0009340:CDS | 45.0% | |
| ACCAATGTGGTGCGACTTAT+TGG | - | chr1_1:13634157-13634176 | Msa0009340:CDS | 45.0% | |
| TCCAATAAGTCGCACCACAT+TGG | + | chr1_1:13634161-13634180 | None:intergenic | 45.0% | |
| ATATCTCTTGGAGTTGCACG+TGG | - | chr1_1:13634301-13634320 | Msa0009340:CDS | 45.0% | |
| GTAACTTTGACTGCTGCAAG+AGG | - | chr1_1:13634466-13634485 | Msa0009340:CDS | 45.0% | |
| ACTGCTGCAAGAGGAACAAT+TGG | - | chr1_1:13634475-13634494 | Msa0009340:CDS | 45.0% | |
| ! | GCTATAGACATCGGCCTTAT+AGG | + | chr1_1:13634545-13634564 | None:intergenic | 45.0% |
| AAGGCCGATGTCTATAGCTT+TGG | - | chr1_1:13634547-13634566 | Msa0009340:intron | 45.0% | |
| ATTGGGAGAAGCTACCAATG+AGG | - | chr1_1:13634692-13634711 | Msa0009340:intron | 45.0% | |
| TCCTAGTGATCGTCCTTCAA+TGG | - | chr1_1:13634770-13634789 | Msa0009340:CDS | 45.0% | |
| TCCATTGAAGGACGATCACT+AGG | + | chr1_1:13634774-13634793 | None:intergenic | 45.0% | |
| !! | GGATATGGAGAAGGTTTTGG+AGG | + | chr1_1:13634843-13634862 | None:intergenic | 45.0% |
| !!! | AAAAAAAAACAAAATAATTT+TGG | - | chr1_1:13633079-13633098 | Msa0009340:intron | 5.0% |
| TCGCAGGATAACTCGTACCT+TGG | + | chr1_1:13631007-13631026 | None:intergenic | 50.0% | |
| TAGACTGGATCATCCCTCAC+AGG | + | chr1_1:13631345-13631364 | None:intergenic | 50.0% | |
| GGCCATGTTTATGCCATTGC+TGG | - | chr1_1:13631408-13631427 | Msa0009340:three_prime_UTR | 50.0% | |
| CCCCAGCAATGGCATAAACA+TGG | + | chr1_1:13631413-13631432 | None:intergenic | 50.0% | |
| TGCCATTGCTGGGGATTTGA+AGG | - | chr1_1:13631419-13631438 | Msa0009340:three_prime_UTR | 50.0% | |
| !! | ATCGGGAGTATTCCACTCCT+CGG | + | chr1_1:13631520-13631539 | None:intergenic | 50.0% |
| AACATTCGCAGCTTCGATGG+AGG | + | chr1_1:13632155-13632174 | None:intergenic | 50.0% | |
| GAGTATGCTACCCATATGGG+TGG | - | chr1_1:13632466-13632485 | Msa0009340:intron | 50.0% | |
| ! | GGTGTTGCCTCCTGATTTAC+AGG | - | chr1_1:13632696-13632715 | Msa0009340:intron | 50.0% |
| GTATAGGATGGGGGTTCATC+TGG | - | chr1_1:13632881-13632900 | Msa0009340:intron | 50.0% | |
| CATCTGGGTGTCAACCTAGT+TGG | - | chr1_1:13632897-13632916 | Msa0009340:intron | 50.0% | |
| TTGTTTCGACGTAGTCGGTG+CGG | + | chr1_1:13633132-13633151 | None:intergenic | 50.0% | |
| ! | TCAGAGTACCCATGCTTCAG+AGG | - | chr1_1:13633186-13633205 | Msa0009340:intron | 50.0% |
| GGGTGAAGGAGGATATGGTA+AGG | - | chr1_1:13634012-13634031 | Msa0009340:CDS | 50.0% | |
| TACAAGGGAAAGCTTCGCAG+TGG | - | chr1_1:13634037-13634056 | Msa0009340:CDS | 50.0% | |
| ACAAGGGAAAGCTTCGCAGT+GGG | - | chr1_1:13634038-13634057 | Msa0009340:CDS | 50.0% | |
| GAAGCTGCATCTGCGTAGAC+TGG | + | chr1_1:13631360-13631379 | None:intergenic | 55.0% | |
| GAGGAGTGGAATACTCCCGA+TGG | - | chr1_1:13631519-13631538 | Msa0009340:three_prime_UTR | 55.0% | |
| TGGTCATTCGATCCAGGGTG+CGG | - | chr1_1:13632663-13632682 | Msa0009340:intron | 55.0% | |
| ATTCGATCCAGGGTGCGGTT+TGG | - | chr1_1:13632668-13632687 | Msa0009340:intron | 55.0% | |
| AAAGCTTCGCAGTGGGCCTT+TGG | - | chr1_1:13634045-13634064 | Msa0009340:CDS | 55.0% | |
| !! | CCAGGGTGCGGTTTGGTTGT+CGG | - | chr1_1:13632675-13632694 | Msa0009340:intron | 60.0% |
| CCGACAACCAAACCGCACCC+TGG | + | chr1_1:13632678-13632697 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 13630660 | 13635082 | 13630660 | ID=Msa0009340;Name=Msa0009340 |
| chr1_1 | mRNA | 13630660 | 13635082 | 13630660 | ID=Msa0009340-mRNA-1;Parent=Msa0009340;Name=Msa0009340-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.4|0.5|0.83|0.6|0.83|6|1102|404 |
| chr1_1 | exon | 13630660 | 13632024 | 13630660 | ID=Msa0009340-mRNA-1:exon:5200;Parent=Msa0009340-mRNA-1 |
| chr1_1 | exon | 13632150 | 13632173 | 13632150 | ID=Msa0009340-mRNA-1:exon:5199;Parent=Msa0009340-mRNA-1 |
| chr1_1 | exon | 13633560 | 13633601 | 13633560 | ID=Msa0009340-mRNA-1:exon:5198;Parent=Msa0009340-mRNA-1 |
| chr1_1 | exon | 13633956 | 13634560 | 13633956 | ID=Msa0009340-mRNA-1:exon:5197;Parent=Msa0009340-mRNA-1 |
| chr1_1 | exon | 13634734 | 13634924 | 13634734 | ID=Msa0009340-mRNA-1:exon:5196;Parent=Msa0009340-mRNA-1 |
| chr1_1 | exon | 13634993 | 13635082 | 13634993 | ID=Msa0009340-mRNA-1:exon:5195;Parent=Msa0009340-mRNA-1 |
| chr1_1 | CDS | 13634993 | 13635082 | 13634993 | ID=Msa0009340-mRNA-1:cds;Parent=Msa0009340-mRNA-1 |
| chr1_1 | CDS | 13634734 | 13634924 | 13634734 | ID=Msa0009340-mRNA-1:cds;Parent=Msa0009340-mRNA-1 |
| chr1_1 | CDS | 13633956 | 13634560 | 13633956 | ID=Msa0009340-mRNA-1:cds;Parent=Msa0009340-mRNA-1 |
| chr1_1 | CDS | 13633560 | 13633601 | 13633560 | ID=Msa0009340-mRNA-1:cds;Parent=Msa0009340-mRNA-1 |
| chr1_1 | CDS | 13632150 | 13632173 | 13632150 | ID=Msa0009340-mRNA-1:cds;Parent=Msa0009340-mRNA-1 |
| chr1_1 | CDS | 13631762 | 13632024 | 13631762 | ID=Msa0009340-mRNA-1:cds;Parent=Msa0009340-mRNA-1 |
| chr1_1 | three_prime_UTR | 13630660 | 13631761 | 13630660 | ID=Msa0009340-mRNA-1:three_prime_utr;Parent=Msa0009340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
