Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150720 | sp|Q700C7|SPCH_ARATH | 43.027 | 337 | 108 | 8 | 19 | 277 | 14 | 344 | 2.19e-65 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150720 | A0A072VF69 | 93.141 | 277 | 15 | 1 | 1 | 277 | 1 | 273 | 8.97e-179 | 503 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0150720 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0124130 | Msa0150720 | 0.807735 | 4.371907e-50 | -8.615850e-47 |
| Msa0150720 | Msa0252630 | 0.804522 | 2.074362e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150720 | MtrunA17_Chr1g0158941 | 93.141 | 277 | 15 | 1 | 1 | 277 | 1 | 273 | 0.0 | 503 |
| Msa0150720 | MtrunA17_Chr3g0126381 | 59.341 | 182 | 48 | 6 | 120 | 277 | 1 | 180 | 1.49e-55 | 177 |
| Msa0150720 | MtrunA17_Chr2g0287761 | 47.594 | 187 | 77 | 2 | 91 | 277 | 1 | 166 | 5.28e-52 | 168 |
| Msa0150720 | MtrunA17_Chr0c01g0489461 | 39.815 | 216 | 115 | 2 | 63 | 278 | 171 | 371 | 3.02e-45 | 157 |
| Msa0150720 | MtrunA17_Chr3g0132471 | 36.161 | 224 | 130 | 2 | 54 | 277 | 79 | 289 | 1.03e-37 | 135 |
| Msa0150720 | MtrunA17_Chr1g0191571 | 35.252 | 278 | 125 | 9 | 30 | 277 | 55 | 307 | 8.90e-35 | 128 |
| Msa0150720 | MtrunA17_Chr7g0273081 | 37.089 | 213 | 111 | 4 | 66 | 277 | 93 | 283 | 3.84e-33 | 123 |
| Msa0150720 | MtrunA17_Chr3g0126361 | 55.039 | 129 | 36 | 6 | 15 | 122 | 5 | 132 | 9.41e-33 | 117 |
| Msa0150720 | MtrunA17_Chr8g0366551 | 36.649 | 191 | 95 | 4 | 90 | 277 | 123 | 290 | 1.21e-31 | 119 |
| Msa0150720 | MtrunA17_Chr5g0426851 | 31.227 | 269 | 145 | 6 | 27 | 277 | 23 | 269 | 2.70e-27 | 107 |
| Msa0150720 | MtrunA17_Chr8g0345871 | 37.037 | 189 | 90 | 2 | 89 | 277 | 179 | 338 | 2.11e-26 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150720 | AT5G53210.2 | 43.323 | 337 | 107 | 8 | 19 | 277 | 14 | 344 | 1.13e-66 | 211 |
| Msa0150720 | AT5G53210.1 | 43.027 | 337 | 108 | 8 | 19 | 277 | 14 | 344 | 2.23e-66 | 211 |
| Msa0150720 | AT3G06120.1 | 44.737 | 190 | 85 | 4 | 91 | 277 | 1 | 173 | 1.11e-45 | 153 |
| Msa0150720 | AT3G24140.1 | 40.000 | 210 | 115 | 2 | 69 | 278 | 177 | 375 | 1.35e-43 | 153 |
| Msa0150720 | AT3G24140.2 | 40.000 | 210 | 115 | 2 | 69 | 278 | 177 | 375 | 1.46e-43 | 153 |
| Msa0150720 | AT1G72210.2 | 34.359 | 195 | 93 | 3 | 90 | 277 | 124 | 290 | 7.76e-30 | 114 |
| Msa0150720 | AT1G72210.1 | 34.184 | 196 | 94 | 3 | 89 | 277 | 123 | 290 | 1.01e-29 | 114 |
| Msa0150720 | AT1G22490.1 | 35.638 | 188 | 97 | 3 | 90 | 277 | 114 | 277 | 5.36e-27 | 107 |
| Msa0150720 | AT1G22490.2 | 35.638 | 188 | 97 | 3 | 90 | 277 | 114 | 277 | 1.49e-26 | 106 |
| Msa0150720 | AT4G01460.1 | 35.450 | 189 | 101 | 2 | 89 | 277 | 113 | 280 | 1.32e-24 | 100 |
| Msa0150720 | AT4G01460.2 | 35.450 | 189 | 101 | 2 | 89 | 277 | 113 | 280 | 1.32e-24 | 100 |
| Msa0150720 | AT5G65320.2 | 35.000 | 200 | 106 | 4 | 78 | 277 | 93 | 268 | 1.64e-22 | 94.4 |
| Msa0150720 | AT5G65320.1 | 35.000 | 200 | 106 | 4 | 78 | 277 | 93 | 268 | 2.42e-22 | 94.4 |
| Msa0150720 | AT2G46810.4 | 34.392 | 189 | 92 | 3 | 90 | 277 | 120 | 277 | 1.99e-21 | 92.4 |
| Msa0150720 | AT2G46810.2 | 33.862 | 189 | 93 | 3 | 90 | 277 | 120 | 277 | 3.46e-21 | 91.3 |
| Msa0150720 | AT2G46810.3 | 33.684 | 190 | 94 | 3 | 89 | 277 | 179 | 337 | 7.17e-21 | 91.3 |
| Msa0150720 | AT2G46810.1 | 33.862 | 189 | 93 | 3 | 90 | 277 | 192 | 349 | 8.80e-21 | 91.3 |
| Msa0150720 | AT3G61950.6 | 32.000 | 175 | 87 | 2 | 90 | 264 | 126 | 268 | 2.57e-19 | 85.9 |
| Msa0150720 | AT3G61950.2 | 32.000 | 175 | 87 | 2 | 90 | 264 | 126 | 268 | 3.50e-19 | 85.9 |
| Msa0150720 | AT3G61950.3 | 32.000 | 175 | 87 | 2 | 90 | 264 | 177 | 319 | 5.27e-19 | 85.9 |
| Msa0150720 | AT3G61950.1 | 31.818 | 176 | 88 | 2 | 89 | 264 | 176 | 319 | 5.83e-19 | 85.9 |
| Msa0150720 | AT5G46690.2 | 56.164 | 73 | 30 | 1 | 90 | 160 | 87 | 159 | 1.91e-18 | 83.6 |
| Msa0150720 | AT5G46690.1 | 56.164 | 73 | 30 | 1 | 90 | 160 | 87 | 159 | 3.42e-18 | 83.2 |
Find 38 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGTTTCTTGGATTCT+AGG | 0.149526 | 1_4:+12348088 | None:intergenic |
| GCTTTACTTGTTCACTATTA+AGG | 0.172834 | 1_4:-12347716 | Msa0150720:CDS |
| TATGGAGTTCTTGGACTAAT+TGG | 0.243592 | 1_4:+12348006 | None:intergenic |
| AACCGTTTCGTCGCGAATTC+CGG | 0.254891 | 1_4:-12347824 | Msa0150720:CDS |
| CTAATTGGTAAGATTATTCT+AGG | 0.295024 | 1_4:+12348021 | None:intergenic |
| CTCGTTGATGTTGTCGTTGA+TGG | 0.295147 | 1_4:+12347918 | None:intergenic |
| TGTCTGTTCTTGAAGATCTA+AGG | 0.315437 | 1_4:-12347783 | Msa0150720:CDS |
| AGCCATTGGTATGGAGTTCT+TGG | 0.318969 | 1_4:+12347997 | None:intergenic |
| AACAAGGTGTCATGATCTAT+TGG | 0.344330 | 1_4:+12349074 | None:intergenic |
| ATATTCAATGAAACTGAGTT+TGG | 0.348570 | 1_4:-12349041 | Msa0150720:CDS |
| ACCGTTTCGTCGCGAATTCC+GGG | 0.356833 | 1_4:-12347823 | Msa0150720:CDS |
| TTCGTCGCGAATTCCGGGGC+AGG | 0.430597 | 1_4:-12347818 | Msa0150720:CDS |
| ATGGAAGAAGCTGAAGAAGT+TGG | 0.434728 | 1_4:+12347937 | None:intergenic |
| GGACTTGGTGGTAAAGGTCT+TGG | 0.442966 | 1_4:+12348042 | None:intergenic |
| GGTAAGATTATTCTAGGACT+TGG | 0.462482 | 1_4:+12348027 | None:intergenic |
| CACCACATTGTTGCAGCCAT+TGG | 0.463771 | 1_4:+12347983 | None:intergenic |
| ATTCTAGGACTTGGTGGTAA+AGG | 0.464684 | 1_4:+12348036 | None:intergenic |
| CATTGTTGCAGCCATTGGTA+TGG | 0.478254 | 1_4:+12347988 | None:intergenic |
| CCCCGGAATTCGCGACGAAA+CGG | 0.496648 | 1_4:+12347822 | None:intergenic |
| GTACAAAATGGAAACTCAAA+AGG | 0.507268 | 1_4:-12349099 | None:intergenic |
| AAGATTATTCTAGGACTTGG+TGG | 0.543325 | 1_4:+12348030 | None:intergenic |
| GATTGTGACTACAATTATAG+AGG | 0.544599 | 1_4:-12348871 | Msa0150720:CDS |
| TGAAACTGAGTTTGGTTCAG+AGG | 0.550414 | 1_4:-12349033 | Msa0150720:CDS |
| GTCTGTGGTTGCTGATGTTG+AGG | 0.576921 | 1_4:-12347878 | Msa0150720:CDS |
| AATAGTGAACAAGTAAAGCA+TGG | 0.577002 | 1_4:+12347720 | None:intergenic |
| ACATCGAATGTCGCATATCA+CGG | 0.587471 | 1_4:-12348829 | Msa0150720:CDS |
| GATCAAGCATCAATAGTTGA+AGG | 0.590664 | 1_4:-12348153 | Msa0150720:CDS |
| ATCTCAGTTTCAGAATCTTG+AGG | 0.599342 | 1_4:+12348927 | None:intergenic |
| GAAGCTGAAGAAGTTGGAGA+TGG | 0.605113 | 1_4:+12347943 | None:intergenic |
| GTCCAAGAACTCCATACCAA+TGG | 0.611914 | 1_4:-12347999 | Msa0150720:CDS |
| ATTATTCTAAGAGCCTGCCC+CGG | 0.625886 | 1_4:+12347805 | None:intergenic |
| TGTCGCGAATTCAACGTCTG+TGG | 0.641523 | 1_4:-12347893 | Msa0150720:CDS |
| CCGTTTCGTCGCGAATTCCG+GGG | 0.649169 | 1_4:-12347822 | Msa0150720:CDS |
| ATAGAGGAACAAAACAACGA+TGG | 0.666577 | 1_4:-12348855 | Msa0150720:CDS |
| GAATATATCAGATAATAACA+AGG | 0.703731 | 1_4:+12349058 | None:intergenic |
| GTGATATGCGACATTCGATG+TGG | 0.706196 | 1_4:+12348831 | None:intergenic |
| CAATGGCTGCAACAATGTGG+TGG | 0.729603 | 1_4:-12347982 | Msa0150720:CDS |
| TACCAATGGCTGCAACAATG+TGG | 0.747770 | 1_4:-12347985 | Msa0150720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTTATTATTTTATGAAG+CGG | - | chr1_4:12348220-12348239 | Msa0150720:intron | 15.0% |
| !!! | TTTTAAATTCAATTAGTTAG+AGG | - | chr1_4:12348413-12348432 | Msa0150720:intron | 15.0% |
| !!! | ATTGTTATTATTTTATGAAG+CGG | - | chr1_4:12348220-12348239 | Msa0150720:intron | 15.0% |
| !!! | TTTTAAATTCAATTAGTTAG+AGG | - | chr1_4:12348413-12348432 | Msa0150720:intron | 15.0% |
| !! | GAATATATCAGATAATAACA+AGG | + | chr1_4:12347745-12347764 | None:intergenic | 20.0% |
| !!! | ATTATTGAAGTTTTCCAAAA+TGG | + | chr1_4:12347802-12347821 | None:intergenic | 20.0% |
| !! | TTAAAAACAAAATAACACCA+AGG | + | chr1_4:12348191-12348210 | None:intergenic | 20.0% |
| !! | ATATAAAACTTAAGATCCAA+TGG | - | chr1_4:12348275-12348294 | Msa0150720:intron | 20.0% |
| !! | GAATATATCAGATAATAACA+AGG | + | chr1_4:12347745-12347764 | None:intergenic | 20.0% |
| !!! | ATTATTGAAGTTTTCCAAAA+TGG | + | chr1_4:12347802-12347821 | None:intergenic | 20.0% |
| !! | TTAAAAACAAAATAACACCA+AGG | + | chr1_4:12348191-12348210 | None:intergenic | 20.0% |
| !! | ATATAAAACTTAAGATCCAA+TGG | - | chr1_4:12348275-12348294 | Msa0150720:intron | 20.0% |
| ! | ATATTCAATGAAACTGAGTT+TGG | - | chr1_4:12347759-12347778 | Msa0150720:CDS | 25.0% |
| !!! | AAGATGTTGTTTTTGAGTTT+TGG | + | chr1_4:12347845-12347864 | None:intergenic | 25.0% |
| ! | AGTAAGTACATATTAACTAG+AGG | - | chr1_4:12348073-12348092 | Msa0150720:CDS | 25.0% |
| ! | TCTTTCTTGAAGAATTCTTT+CGG | + | chr1_4:12348112-12348131 | None:intergenic | 25.0% |
| ! | GAAACTATAATTGGATAGAA+TGG | + | chr1_4:12348146-12348165 | None:intergenic | 25.0% |
| ! | CAACTAATTACTCTTCTATA+TGG | - | chr1_4:12348616-12348635 | Msa0150720:intron | 25.0% |
| !!! | GTAAACTTTTCTTTGTTTCT+TGG | + | chr1_4:12348723-12348742 | None:intergenic | 25.0% |
| ! | CTAATTGGTAAGATTATTCT+AGG | + | chr1_4:12348782-12348801 | None:intergenic | 25.0% |
| ! | ATATTCAATGAAACTGAGTT+TGG | - | chr1_4:12347759-12347778 | Msa0150720:CDS | 25.0% |
| !!! | AAGATGTTGTTTTTGAGTTT+TGG | + | chr1_4:12347845-12347864 | None:intergenic | 25.0% |
| ! | AGTAAGTACATATTAACTAG+AGG | - | chr1_4:12348073-12348092 | Msa0150720:CDS | 25.0% |
| ! | TCTTTCTTGAAGAATTCTTT+CGG | + | chr1_4:12348112-12348131 | None:intergenic | 25.0% |
| ! | GAAACTATAATTGGATAGAA+TGG | + | chr1_4:12348146-12348165 | None:intergenic | 25.0% |
| ! | CAACTAATTACTCTTCTATA+TGG | - | chr1_4:12348616-12348635 | Msa0150720:intron | 25.0% |
| !!! | GTAAACTTTTCTTTGTTTCT+TGG | + | chr1_4:12348723-12348742 | None:intergenic | 25.0% |
| ! | CTAATTGGTAAGATTATTCT+AGG | + | chr1_4:12348782-12348801 | None:intergenic | 25.0% |
| !! | GAGTTTTGGTCATTGATAAT+GGG | + | chr1_4:12347831-12347850 | None:intergenic | 30.0% |
| !! | TGAGTTTTGGTCATTGATAA+TGG | + | chr1_4:12347832-12347851 | None:intergenic | 30.0% |
| GATTGTGACTACAATTATAG+AGG | - | chr1_4:12347929-12347948 | Msa0150720:CDS | 30.0% | |
| ! | ACTCTTTTGACATAAAAGCA+AGG | + | chr1_4:12348056-12348075 | None:intergenic | 30.0% |
| CTTTCTTGAAGAATTCTTTC+GGG | + | chr1_4:12348111-12348130 | None:intergenic | 30.0% | |
| TATCCAATTATAGTTTCTGC+TGG | - | chr1_4:12348149-12348168 | Msa0150720:CDS | 30.0% | |
| CAGAAACCAAACCAAATTTA+TGG | - | chr1_4:12348447-12348466 | Msa0150720:intron | 30.0% | |
| ATTACTCTTCTATATGGCTT+AGG | - | chr1_4:12348622-12348641 | Msa0150720:intron | 30.0% | |
| TTACTCTTCTATATGGCTTA+GGG | - | chr1_4:12348623-12348642 | Msa0150720:intron | 30.0% | |
| ! | TTCTTTGTTTCTTGGATTCT+AGG | + | chr1_4:12348715-12348734 | None:intergenic | 30.0% |
| AATAGTGAACAAGTAAAGCA+TGG | + | chr1_4:12349083-12349102 | None:intergenic | 30.0% | |
| GCTTTACTTGTTCACTATTA+AGG | - | chr1_4:12349084-12349103 | Msa0150720:CDS | 30.0% | |
| !! | GAGTTTTGGTCATTGATAAT+GGG | + | chr1_4:12347831-12347850 | None:intergenic | 30.0% |
| !! | TGAGTTTTGGTCATTGATAA+TGG | + | chr1_4:12347832-12347851 | None:intergenic | 30.0% |
| GATTGTGACTACAATTATAG+AGG | - | chr1_4:12347929-12347948 | Msa0150720:CDS | 30.0% | |
| ! | ACTCTTTTGACATAAAAGCA+AGG | + | chr1_4:12348056-12348075 | None:intergenic | 30.0% |
| CTTTCTTGAAGAATTCTTTC+GGG | + | chr1_4:12348111-12348130 | None:intergenic | 30.0% | |
| TATCCAATTATAGTTTCTGC+TGG | - | chr1_4:12348149-12348168 | Msa0150720:CDS | 30.0% | |
| CAGAAACCAAACCAAATTTA+TGG | - | chr1_4:12348447-12348466 | Msa0150720:intron | 30.0% | |
| ATTACTCTTCTATATGGCTT+AGG | - | chr1_4:12348622-12348641 | Msa0150720:intron | 30.0% | |
| TTACTCTTCTATATGGCTTA+GGG | - | chr1_4:12348623-12348642 | Msa0150720:intron | 30.0% | |
| ! | TTCTTTGTTTCTTGGATTCT+AGG | + | chr1_4:12348715-12348734 | None:intergenic | 30.0% |
| AATAGTGAACAAGTAAAGCA+TGG | + | chr1_4:12349083-12349102 | None:intergenic | 30.0% | |
| GCTTTACTTGTTCACTATTA+AGG | - | chr1_4:12349084-12349103 | Msa0150720:CDS | 30.0% | |
| ! | AACAAGGTGTCATGATCTAT+TGG | + | chr1_4:12347729-12347748 | None:intergenic | 35.0% |
| ! | AGAGGATCTCTTTTCCATTT+TGG | - | chr1_4:12347785-12347804 | Msa0150720:CDS | 35.0% |
| !!! | TTTTGGTCATTGATAATGGG+AGG | + | chr1_4:12347828-12347847 | None:intergenic | 35.0% |
| ATCTCAGTTTCAGAATCTTG+AGG | + | chr1_4:12347876-12347895 | None:intergenic | 35.0% | |
| ATAGAGGAACAAAACAACGA+TGG | - | chr1_4:12347945-12347964 | Msa0150720:CDS | 35.0% | |
| TGTCCAGCAGAAACTATAAT+TGG | + | chr1_4:12348155-12348174 | None:intergenic | 35.0% | |
| ACCAAACCAAATTTATGGTC+TGG | - | chr1_4:12348452-12348471 | Msa0150720:intron | 35.0% | |
| ACCAGACCATAAATTTGGTT+TGG | + | chr1_4:12348456-12348475 | None:intergenic | 35.0% | |
| TAAACTACGGTTCGTAGTTA+GGG | + | chr1_4:12348496-12348515 | None:intergenic | 35.0% | |
| TAACTACGAACCGTAGTTTA+CGG | - | chr1_4:12348496-12348515 | Msa0150720:intron | 35.0% | |
| ATTGCATCAACCGTAAACTA+CGG | + | chr1_4:12348509-12348528 | None:intergenic | 35.0% | |
| GATCAAGCATCAATAGTTGA+AGG | - | chr1_4:12348647-12348666 | Msa0150720:intron | 35.0% | |
| !! | AAGATTATTCTAGGACTTGG+TGG | + | chr1_4:12348773-12348792 | None:intergenic | 35.0% |
| !! | GGTAAGATTATTCTAGGACT+TGG | + | chr1_4:12348776-12348795 | None:intergenic | 35.0% |
| TATGGAGTTCTTGGACTAAT+TGG | + | chr1_4:12348797-12348816 | None:intergenic | 35.0% | |
| ! | GATGTTGAGGTTAAGTTTTG+TGG | - | chr1_4:12348935-12348954 | Msa0150720:CDS | 35.0% |
| TGTCTGTTCTTGAAGATCTA+AGG | - | chr1_4:12349017-12349036 | Msa0150720:CDS | 35.0% | |
| ! | AACAAGGTGTCATGATCTAT+TGG | + | chr1_4:12347729-12347748 | None:intergenic | 35.0% |
| ! | AGAGGATCTCTTTTCCATTT+TGG | - | chr1_4:12347785-12347804 | Msa0150720:CDS | 35.0% |
| !!! | TTTTGGTCATTGATAATGGG+AGG | + | chr1_4:12347828-12347847 | None:intergenic | 35.0% |
| ATCTCAGTTTCAGAATCTTG+AGG | + | chr1_4:12347876-12347895 | None:intergenic | 35.0% | |
| ATAGAGGAACAAAACAACGA+TGG | - | chr1_4:12347945-12347964 | Msa0150720:CDS | 35.0% | |
| TGTCCAGCAGAAACTATAAT+TGG | + | chr1_4:12348155-12348174 | None:intergenic | 35.0% | |
| ACCAAACCAAATTTATGGTC+TGG | - | chr1_4:12348452-12348471 | Msa0150720:intron | 35.0% | |
| ACCAGACCATAAATTTGGTT+TGG | + | chr1_4:12348456-12348475 | None:intergenic | 35.0% | |
| TAAACTACGGTTCGTAGTTA+GGG | + | chr1_4:12348496-12348515 | None:intergenic | 35.0% | |
| TAACTACGAACCGTAGTTTA+CGG | - | chr1_4:12348496-12348515 | Msa0150720:intron | 35.0% | |
| ATTGCATCAACCGTAAACTA+CGG | + | chr1_4:12348509-12348528 | None:intergenic | 35.0% | |
| GATCAAGCATCAATAGTTGA+AGG | - | chr1_4:12348647-12348666 | Msa0150720:intron | 35.0% | |
| !! | AAGATTATTCTAGGACTTGG+TGG | + | chr1_4:12348773-12348792 | None:intergenic | 35.0% |
| !! | GGTAAGATTATTCTAGGACT+TGG | + | chr1_4:12348776-12348795 | None:intergenic | 35.0% |
| TATGGAGTTCTTGGACTAAT+TGG | + | chr1_4:12348797-12348816 | None:intergenic | 35.0% | |
| ! | GATGTTGAGGTTAAGTTTTG+TGG | - | chr1_4:12348935-12348954 | Msa0150720:CDS | 35.0% |
| TGTCTGTTCTTGAAGATCTA+AGG | - | chr1_4:12349017-12349036 | Msa0150720:CDS | 35.0% | |
| ! | TGAAACTGAGTTTGGTTCAG+AGG | - | chr1_4:12347767-12347786 | Msa0150720:CDS | 40.0% |
| ACATCGAATGTCGCATATCA+CGG | - | chr1_4:12347971-12347990 | Msa0150720:CDS | 40.0% | |
| TTTCTGCTGGACAGAATACA+CGG | - | chr1_4:12348162-12348181 | Msa0150720:intron | 40.0% | |
| GTTGGGAGATTAACAACCAT+TGG | + | chr1_4:12348294-12348313 | None:intergenic | 40.0% | |
| TGTTAATCTCCCAACTCTCT+CGG | - | chr1_4:12348299-12348318 | Msa0150720:intron | 40.0% | |
| ACTGGACCAGACCATAAATT+TGG | + | chr1_4:12348461-12348480 | None:intergenic | 40.0% | |
| AAACTACGGTTCGTAGTTAG+GGG | + | chr1_4:12348495-12348514 | None:intergenic | 40.0% | |
| GTAAACTACGGTTCGTAGTT+AGG | + | chr1_4:12348497-12348516 | None:intergenic | 40.0% | |
| !! | ATTCTAGGACTTGGTGGTAA+AGG | + | chr1_4:12348767-12348786 | None:intergenic | 40.0% |
| ATGGAAGAAGCTGAAGAAGT+TGG | + | chr1_4:12348866-12348885 | None:intergenic | 40.0% | |
| ! | TGAAACTGAGTTTGGTTCAG+AGG | - | chr1_4:12347767-12347786 | Msa0150720:CDS | 40.0% |
| ACATCGAATGTCGCATATCA+CGG | - | chr1_4:12347971-12347990 | Msa0150720:CDS | 40.0% | |
| TTTCTGCTGGACAGAATACA+CGG | - | chr1_4:12348162-12348181 | Msa0150720:intron | 40.0% | |
| GTTGGGAGATTAACAACCAT+TGG | + | chr1_4:12348294-12348313 | None:intergenic | 40.0% | |
| TGTTAATCTCCCAACTCTCT+CGG | - | chr1_4:12348299-12348318 | Msa0150720:intron | 40.0% | |
| ACTGGACCAGACCATAAATT+TGG | + | chr1_4:12348461-12348480 | None:intergenic | 40.0% | |
| AAACTACGGTTCGTAGTTAG+GGG | + | chr1_4:12348495-12348514 | None:intergenic | 40.0% | |
| GTAAACTACGGTTCGTAGTT+AGG | + | chr1_4:12348497-12348516 | None:intergenic | 40.0% | |
| !! | ATTCTAGGACTTGGTGGTAA+AGG | + | chr1_4:12348767-12348786 | None:intergenic | 40.0% |
| ATGGAAGAAGCTGAAGAAGT+TGG | + | chr1_4:12348866-12348885 | None:intergenic | 40.0% | |
| GTGATATGCGACATTCGATG+TGG | + | chr1_4:12347972-12347991 | None:intergenic | 45.0% | |
| GTTAATCTCCCAACTCTCTC+GGG | - | chr1_4:12348300-12348319 | Msa0150720:intron | 45.0% | |
| GAAATCATCCCGAGAGAGTT+GGG | + | chr1_4:12348311-12348330 | None:intergenic | 45.0% | |
| CAACTCTCTCGGGATGATTT+CGG | - | chr1_4:12348310-12348329 | Msa0150720:intron | 45.0% | |
| AACTCTCTCGGGATGATTTC+GGG | - | chr1_4:12348311-12348330 | Msa0150720:intron | 45.0% | |
| ATATTGCTAGATGTCCCGAC+AGG | + | chr1_4:12348343-12348362 | None:intergenic | 45.0% | |
| GTCCAAGAACTCCATACCAA+TGG | - | chr1_4:12348801-12348820 | Msa0150720:CDS | 45.0% | |
| AGCCATTGGTATGGAGTTCT+TGG | + | chr1_4:12348806-12348825 | None:intergenic | 45.0% | |
| CATTGTTGCAGCCATTGGTA+TGG | + | chr1_4:12348815-12348834 | None:intergenic | 45.0% | |
| TACCAATGGCTGCAACAATG+TGG | - | chr1_4:12348815-12348834 | Msa0150720:CDS | 45.0% | |
| GAAGCTGAAGAAGTTGGAGA+TGG | + | chr1_4:12348860-12348879 | None:intergenic | 45.0% | |
| CTCGTTGATGTTGTCGTTGA+TGG | + | chr1_4:12348885-12348904 | None:intergenic | 45.0% | |
| ! | ATTATTCTAAGAGCCTGCCC+CGG | + | chr1_4:12348998-12349017 | None:intergenic | 45.0% |
| GTGATATGCGACATTCGATG+TGG | + | chr1_4:12347972-12347991 | None:intergenic | 45.0% | |
| GTTAATCTCCCAACTCTCTC+GGG | - | chr1_4:12348300-12348319 | Msa0150720:intron | 45.0% | |
| GAAATCATCCCGAGAGAGTT+GGG | + | chr1_4:12348311-12348330 | None:intergenic | 45.0% | |
| CAACTCTCTCGGGATGATTT+CGG | - | chr1_4:12348310-12348329 | Msa0150720:intron | 45.0% | |
| AACTCTCTCGGGATGATTTC+GGG | - | chr1_4:12348311-12348330 | Msa0150720:intron | 45.0% | |
| ATATTGCTAGATGTCCCGAC+AGG | + | chr1_4:12348343-12348362 | None:intergenic | 45.0% | |
| GTCCAAGAACTCCATACCAA+TGG | - | chr1_4:12348801-12348820 | Msa0150720:CDS | 45.0% | |
| AGCCATTGGTATGGAGTTCT+TGG | + | chr1_4:12348806-12348825 | None:intergenic | 45.0% | |
| CATTGTTGCAGCCATTGGTA+TGG | + | chr1_4:12348815-12348834 | None:intergenic | 45.0% | |
| TACCAATGGCTGCAACAATG+TGG | - | chr1_4:12348815-12348834 | Msa0150720:CDS | 45.0% | |
| GAAGCTGAAGAAGTTGGAGA+TGG | + | chr1_4:12348860-12348879 | None:intergenic | 45.0% | |
| CTCGTTGATGTTGTCGTTGA+TGG | + | chr1_4:12348885-12348904 | None:intergenic | 45.0% | |
| ! | ATTATTCTAAGAGCCTGCCC+CGG | + | chr1_4:12348998-12349017 | None:intergenic | 45.0% |
| !!! | TAATTTTAATCTTAATAAAA+AGG | + | chr1_4:12348553-12348572 | None:intergenic | 5.0% |
| !!! | TAATTTTAATCTTAATAAAA+AGG | + | chr1_4:12348553-12348572 | None:intergenic | 5.0% |
| GACAGAATACACGGCATCCT+TGG | - | chr1_4:12348171-12348190 | Msa0150720:intron | 50.0% | |
| CGAAATCATCCCGAGAGAGT+TGG | + | chr1_4:12348312-12348331 | None:intergenic | 50.0% | |
| ! | TTAGGGGTGTGCAAAGGAAC+TGG | + | chr1_4:12348479-12348498 | None:intergenic | 50.0% |
| ! | TCGTAGTTAGGGGTGTGCAA+AGG | + | chr1_4:12348485-12348504 | None:intergenic | 50.0% |
| !! | GGACTTGGTGGTAAAGGTCT+TGG | + | chr1_4:12348761-12348780 | None:intergenic | 50.0% |
| CACCACATTGTTGCAGCCAT+TGG | + | chr1_4:12348820-12348839 | None:intergenic | 50.0% | |
| CAATGGCTGCAACAATGTGG+TGG | - | chr1_4:12348818-12348837 | Msa0150720:CDS | 50.0% | |
| TGTCGCGAATTCAACGTCTG+TGG | - | chr1_4:12348907-12348926 | Msa0150720:CDS | 50.0% | |
| GTCTGTGGTTGCTGATGTTG+AGG | - | chr1_4:12348922-12348941 | Msa0150720:CDS | 50.0% | |
| AACCGTTTCGTCGCGAATTC+CGG | - | chr1_4:12348976-12348995 | Msa0150720:CDS | 50.0% | |
| GACAGAATACACGGCATCCT+TGG | - | chr1_4:12348171-12348190 | Msa0150720:intron | 50.0% | |
| CGAAATCATCCCGAGAGAGT+TGG | + | chr1_4:12348312-12348331 | None:intergenic | 50.0% | |
| ! | TTAGGGGTGTGCAAAGGAAC+TGG | + | chr1_4:12348479-12348498 | None:intergenic | 50.0% |
| ! | TCGTAGTTAGGGGTGTGCAA+AGG | + | chr1_4:12348485-12348504 | None:intergenic | 50.0% |
| !! | GGACTTGGTGGTAAAGGTCT+TGG | + | chr1_4:12348761-12348780 | None:intergenic | 50.0% |
| CACCACATTGTTGCAGCCAT+TGG | + | chr1_4:12348820-12348839 | None:intergenic | 50.0% | |
| CAATGGCTGCAACAATGTGG+TGG | - | chr1_4:12348818-12348837 | Msa0150720:CDS | 50.0% | |
| TGTCGCGAATTCAACGTCTG+TGG | - | chr1_4:12348907-12348926 | Msa0150720:CDS | 50.0% | |
| GTCTGTGGTTGCTGATGTTG+AGG | - | chr1_4:12348922-12348941 | Msa0150720:CDS | 50.0% | |
| AACCGTTTCGTCGCGAATTC+CGG | - | chr1_4:12348976-12348995 | Msa0150720:CDS | 50.0% | |
| GATTTCGGGAACACGCCTGT+CGG | - | chr1_4:12348325-12348344 | Msa0150720:intron | 55.0% | |
| ATTTCGGGAACACGCCTGTC+GGG | - | chr1_4:12348326-12348345 | Msa0150720:intron | 55.0% | |
| ACCGTTTCGTCGCGAATTCC+GGG | - | chr1_4:12348977-12348996 | Msa0150720:CDS | 55.0% | |
| GATTTCGGGAACACGCCTGT+CGG | - | chr1_4:12348325-12348344 | Msa0150720:intron | 55.0% | |
| ATTTCGGGAACACGCCTGTC+GGG | - | chr1_4:12348326-12348345 | Msa0150720:intron | 55.0% | |
| ACCGTTTCGTCGCGAATTCC+GGG | - | chr1_4:12348977-12348996 | Msa0150720:CDS | 55.0% | |
| CCCCGGAATTCGCGACGAAA+CGG | + | chr1_4:12348981-12349000 | None:intergenic | 60.0% | |
| CCGTTTCGTCGCGAATTCCG+GGG | - | chr1_4:12348978-12348997 | Msa0150720:CDS | 60.0% | |
| CCCCGGAATTCGCGACGAAA+CGG | + | chr1_4:12348981-12349000 | None:intergenic | 60.0% | |
| CCGTTTCGTCGCGAATTCCG+GGG | - | chr1_4:12348978-12348997 | Msa0150720:CDS | 60.0% | |
| TTCGTCGCGAATTCCGGGGC+AGG | - | chr1_4:12348982-12349001 | Msa0150720:CDS | 65.0% | |
| TTCGTCGCGAATTCCGGGGC+AGG | - | chr1_4:12348982-12349001 | Msa0150720:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 12347708 | 12349114 | 12347708 | ID=Msa0150720;Name=Msa0150720 |
| chr1_4 | mRNA | 12347708 | 12349114 | 12347708 | ID=Msa0150720-mRNA-1;Parent=Msa0150720;Name=Msa0150720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|278 |
| chr1_4 | exon | 12348749 | 12349114 | 12348749 | ID=Msa0150720-mRNA-1:exon:5008;Parent=Msa0150720-mRNA-1 |
| chr1_4 | exon | 12347708 | 12348178 | 12347708 | ID=Msa0150720-mRNA-1:exon:5007;Parent=Msa0150720-mRNA-1 |
| chr1_4 | CDS | 12348749 | 12349114 | 12348749 | ID=Msa0150720-mRNA-1:cds;Parent=Msa0150720-mRNA-1 |
| chr1_4 | CDS | 12347708 | 12348178 | 12347708 | ID=Msa0150720-mRNA-1:cds;Parent=Msa0150720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
