Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252630 | XP_013464264.1 | 94.828 | 116 | 6 | 0 | 1 | 116 | 1 | 116 | 3.96e-78 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252630 | sp|Q8LC53|EPF2_ARATH | 47.222 | 108 | 51 | 2 | 13 | 115 | 12 | 118 | 5.85e-28 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252630 | A0A072V8D7 | 94.828 | 116 | 6 | 0 | 1 | 116 | 1 | 116 | 1.89e-78 | 236 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015710 | Msa0252630 | 0.806208 | 9.195475e-50 | -8.615850e-47 |
| Msa0019600 | Msa0252630 | 0.859301 | 4.546991e-63 | -8.615850e-47 |
| Msa0050040 | Msa0252630 | 0.805577 | 1.248290e-49 | -8.615850e-47 |
| Msa0055450 | Msa0252630 | 0.810404 | 1.172013e-50 | -8.615850e-47 |
| Msa0066320 | Msa0252630 | 0.848845 | 4.726530e-60 | -8.615850e-47 |
| Msa0102990 | Msa0252630 | 0.805413 | 1.350878e-49 | -8.615850e-47 |
| Msa0104500 | Msa0252630 | 0.809048 | 2.293375e-50 | -8.615850e-47 |
| Msa0111750 | Msa0252630 | 0.818896 | 1.543104e-52 | -8.615850e-47 |
| Msa0124130 | Msa0252630 | 0.848721 | 5.115750e-60 | -8.615850e-47 |
| Msa0141120 | Msa0252630 | 0.809145 | 2.186587e-50 | -8.615850e-47 |
| Msa0149140 | Msa0252630 | 0.837533 | 4.915334e-57 | -8.615850e-47 |
| Msa0150720 | Msa0252630 | 0.804522 | 2.074362e-49 | -8.615850e-47 |
| Msa0152500 | Msa0252630 | 0.807651 | 4.555065e-50 | -8.615850e-47 |
| Msa0156250 | Msa0252630 | 0.815375 | 9.545474e-52 | -8.615850e-47 |
| Msa0185490 | Msa0252630 | 0.805628 | 1.217656e-49 | -8.615850e-47 |
| Msa0212080 | Msa0252630 | 0.957765 | 1.227970e-115 | -8.615850e-47 |
| Msa0212150 | Msa0252630 | 0.809619 | 1.730578e-50 | -8.615850e-47 |
| Msa0215640 | Msa0252630 | 0.812661 | 3.790086e-51 | -8.615850e-47 |
| Msa0219190 | Msa0252630 | 0.818292 | 2.115654e-52 | -8.615850e-47 |
| Msa0252630 | Msa0252770 | 0.819044 | 1.428231e-52 | -8.615850e-47 |
| Msa0252630 | Msa0291330 | 0.962856 | 2.230542e-121 | -8.615850e-47 |
| Msa0252630 | Msa0298240 | 0.818638 | 1.766241e-52 | -8.615850e-47 |
| Msa0252630 | Msa0306120 | 0.814197 | 1.742023e-51 | -8.615850e-47 |
| Msa0252630 | Msa0329460 | 0.828349 | 9.444300e-55 | -8.615850e-47 |
| Msa0252630 | Msa0329620 | 0.821223 | 4.525048e-53 | -8.615850e-47 |
| Msa0252630 | Msa0343660 | 0.816121 | 6.509609e-52 | -8.615850e-47 |
| Msa0252630 | Msa0344570 | 0.828950 | 6.761785e-55 | -8.615850e-47 |
| Msa0252630 | Msa0351770 | 0.849284 | 3.568966e-60 | -8.615850e-47 |
| Msa0252630 | Msa0359250 | 0.875562 | 2.795037e-68 | -8.615850e-47 |
| Msa0252630 | Msa0373960 | 0.822788 | 1.963678e-53 | -8.615850e-47 |
| Msa0252630 | Msa0375680 | 0.822521 | 2.266162e-53 | -8.615850e-47 |
| Msa0252630 | Msa0375700 | 0.814333 | 1.625294e-51 | -8.615850e-47 |
| Msa0252630 | Msa0382010 | 0.817327 | 3.492574e-52 | -8.615850e-47 |
| Msa0252630 | Msa0392420 | 0.831218 | 1.890316e-55 | -8.615850e-47 |
| Msa0252630 | Msa0392460 | 0.825343 | 4.937498e-54 | -8.615850e-47 |
| Msa0252630 | Msa0392490 | 0.827660 | 1.384167e-54 | -8.615850e-47 |
| Msa0252630 | Msa0406000 | 0.875187 | 3.753540e-68 | -8.615850e-47 |
| Msa0252630 | Msa0415320 | 0.821804 | 3.323170e-53 | -8.615850e-47 |
| Msa0252630 | Msa0423100 | 0.827258 | 1.727464e-54 | -8.615850e-47 |
| Msa0252630 | Msa0424330 | 0.839683 | 1.368477e-57 | -8.615850e-47 |
| Msa0252630 | Msa0424340 | 0.838575 | 2.651102e-57 | -8.615850e-47 |
| Msa0252630 | Msa0424350 | 0.837531 | 4.920500e-57 | -8.615850e-47 |
| Msa0252630 | Msa0451400 | 0.886906 | 2.274640e-72 | -8.615850e-47 |
| Msa0252630 | Msa0456090 | 0.800609 | 1.329832e-48 | -8.615850e-47 |
| Msa0252630 | Msa0469260 | 0.801726 | 7.860507e-49 | -8.615850e-47 |
| Msa0252630 | Msa0479540 | 0.813965 | 1.959913e-51 | -8.615850e-47 |
| Msa0252630 | Msa0487570 | 0.835911 | 1.273626e-56 | -8.615850e-47 |
| Msa0252630 | Msa0487630 | 0.827059 | 1.927774e-54 | -8.615850e-47 |
| Msa0252630 | Msa0492190 | 0.857518 | 1.545556e-62 | -8.615850e-47 |
| Msa0252630 | Msa0515950 | 0.844885 | 5.728835e-59 | -8.615850e-47 |
| Msa0252630 | Msa0520510 | 0.812706 | 3.704601e-51 | -8.615850e-47 |
| Msa0252630 | Msa0534930 | 0.855457 | 6.228720e-62 | -8.615850e-47 |
| Msa0252630 | Msa0535040 | 0.811946 | 5.429059e-51 | -8.615850e-47 |
| Msa0252630 | Msa0575740 | 0.843416 | 1.420448e-58 | -8.615850e-47 |
| Msa0252630 | Msa0591790 | 0.841745 | 3.945015e-58 | -8.615850e-47 |
| Msa0252630 | Msa0591800 | 0.835506 | 1.613061e-56 | -8.615850e-47 |
| Msa0252630 | Msa0594090 | 0.834844 | 2.368784e-56 | -8.615850e-47 |
| Msa0252630 | Msa0669840 | 0.886394 | 3.554479e-72 | -8.615850e-47 |
| Msa0252630 | Msa0709450 | 0.819516 | 1.114775e-52 | -8.615850e-47 |
| Msa0252630 | Msa0711320 | 0.812302 | 4.539771e-51 | -8.615850e-47 |
| Msa0252630 | Msa0725860 | 0.806558 | 7.758853e-50 | -8.615850e-47 |
| Msa0252630 | Msa0739470 | 0.814326 | 1.630759e-51 | -8.615850e-47 |
| Msa0252630 | Msa0739580 | 0.843895 | 1.057704e-58 | -8.615850e-47 |
| Msa0252630 | Msa0751890 | 0.821369 | 4.189017e-53 | -8.615850e-47 |
| Msa0252630 | Msa0752840 | 0.822627 | 2.140880e-53 | -8.615850e-47 |
| Msa0252630 | Msa0764820 | 0.821386 | 4.149618e-53 | -8.615850e-47 |
| Msa0252630 | Msa0770290 | 0.825642 | 4.194452e-54 | -8.615850e-47 |
| Msa0252630 | Msa0782360 | 0.819057 | 1.418343e-52 | -8.615850e-47 |
| Msa0252630 | Msa0819890 | 0.824466 | 7.951591e-54 | -8.615850e-47 |
| Msa0252630 | Msa0823400 | 0.815970 | 7.036047e-52 | -8.615850e-47 |
| Msa0252630 | Msa0831940 | 0.817244 | 3.645589e-52 | -8.615850e-47 |
| Msa0252630 | Msa0840500 | 0.802725 | 4.894783e-49 | -8.615850e-47 |
| Msa0252630 | Msa0844560 | 0.801444 | 8.978047e-49 | -8.615850e-47 |
| Msa0252630 | Msa0849280 | 0.823622 | 1.254730e-53 | -8.615850e-47 |
| Msa0252630 | Msa0851020 | 0.825985 | 3.476579e-54 | -8.615850e-47 |
| Msa0252630 | Msa0860160 | 0.826974 | 2.020065e-54 | -8.615850e-47 |
| Msa0252630 | Msa0860170 | 0.805108 | 1.565221e-49 | -8.615850e-47 |
| Msa0252630 | Msa0860280 | 0.825188 | 5.370206e-54 | -8.615850e-47 |
| Msa0252630 | Msa0867350 | 0.850965 | 1.207036e-60 | -8.615850e-47 |
| Msa0252630 | Msa0896350 | 0.808404 | 3.149385e-50 | -8.615850e-47 |
| Msa0252630 | Msa0898730 | 0.844037 | 9.689822e-59 | -8.615850e-47 |
| Msa0252630 | Msa0922750 | 0.816070 | 6.682001e-52 | -8.615850e-47 |
| Msa0252630 | Msa0927120 | 0.809599 | 1.747205e-50 | -8.615850e-47 |
| Msa0252630 | Msa0929870 | 0.859292 | 4.574399e-63 | -8.615850e-47 |
| Msa0252630 | Msa0941820 | 0.823059 | 1.698138e-53 | -8.615850e-47 |
| Msa0252630 | Msa0944760 | 0.806919 | 6.511853e-50 | -8.615850e-47 |
| Msa0252630 | Msa0953540 | 0.812694 | 3.726227e-51 | -8.615850e-47 |
| Msa0252630 | Msa0961560 | 0.823157 | 1.610927e-53 | -8.615850e-47 |
| Msa0252630 | Msa0965310 | 0.803102 | 4.091939e-49 | -8.615850e-47 |
| Msa0252630 | Msa0996270 | 0.846665 | 1.883100e-59 | -8.615850e-47 |
| Msa0252630 | Msa0999300 | 0.813950 | 1.974971e-51 | -8.615850e-47 |
| Msa0252630 | Msa1037890 | 0.828133 | 1.064843e-54 | -8.615850e-47 |
| Msa0252630 | Msa1037900 | 0.843240 | 1.582283e-58 | -8.615850e-47 |
| Msa0252630 | Msa1037910 | 0.826175 | 3.132798e-54 | -8.615850e-47 |
| Msa0252630 | Msa1073340 | 0.816027 | 6.834438e-52 | -8.615850e-47 |
| Msa0252630 | Msa1081570 | 0.806677 | 7.323571e-50 | -8.615850e-47 |
| Msa0252630 | Msa1084520 | 0.836600 | 8.509384e-57 | -8.615850e-47 |
| Msa0252630 | Msa1125810 | 0.834434 | 3.004299e-56 | -8.615850e-47 |
| Msa0252630 | Msa1127140 | 0.805900 | 1.067483e-49 | -8.615850e-47 |
| Msa0252630 | Msa1129950 | 0.830414 | 2.976544e-55 | -8.615850e-47 |
| Msa0252630 | Msa1129960 | 0.828750 | 7.556261e-55 | -8.615850e-47 |
| Msa0252630 | Msa1129970 | 0.802887 | 4.531503e-49 | -8.615850e-47 |
| Msa0252630 | Msa1130010 | 0.869119 | 3.930026e-66 | -8.615850e-47 |
| Msa0252630 | Msa1145020 | 0.843531 | 1.323570e-58 | -8.615850e-47 |
| Msa0252630 | Msa1169990 | 0.804459 | 2.138594e-49 | -8.615850e-47 |
| Msa0252630 | Msa1171310 | 0.856292 | 3.550911e-62 | -8.615850e-47 |
| Msa0252630 | Msa1201110 | 0.812274 | 4.605090e-51 | -8.615850e-47 |
| Msa0252630 | Msa1201160 | 0.850564 | 1.565060e-60 | -8.615850e-47 |
| Msa0252630 | Msa1228190 | 0.857142 | 1.995728e-62 | -8.615850e-47 |
| Msa0252630 | Msa1271260 | 0.821616 | 3.672986e-53 | -8.615850e-47 |
| Msa0252630 | Msa1294290 | 0.835030 | 2.127426e-56 | -8.615850e-47 |
| Msa0252630 | Msa1305510 | 0.850704 | 1.429184e-60 | -8.615850e-47 |
| Msa0252630 | Msa1316540 | 0.811236 | 7.744225e-51 | -8.615850e-47 |
| Msa0252630 | Msa1378870 | 0.829313 | 5.520000e-55 | -8.615850e-47 |
| Msa0252630 | Msa1389050 | 0.814389 | 1.579681e-51 | -8.615850e-47 |
| Msa0252630 | Msa1394890 | 0.814215 | 1.725752e-51 | -8.615850e-47 |
| Msa0252630 | Msa1406780 | 0.836274 | 1.030071e-56 | -8.615850e-47 |
| Msa0252630 | Msa1420060 | 0.832609 | 8.572037e-56 | -8.615850e-47 |
| Msa0252630 | Msa1421550 | 0.840767 | 7.129160e-58 | -8.615850e-47 |
| Msa0252630 | Msa1423460 | 0.808555 | 2.924611e-50 | -8.615850e-47 |
| Msa0252630 | Msa1431850 | 0.843374 | 1.457303e-58 | -8.615850e-47 |
| Msa0252630 | Msa1435480 | 0.816840 | 4.495104e-52 | -8.615850e-47 |
| Msa0252630 | Msa1455320 | 0.803824 | 2.899575e-49 | -8.615850e-47 |
| Msa0252630 | Msa1458910 | 0.801511 | 8.697649e-49 | -8.615850e-47 |
| Msa0252630 | Msa1459530 | 0.803697 | 3.080331e-49 | -8.615850e-47 |
| Msa0252630 | Msa1461060 | 0.819624 | 1.053132e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252630 | MtrunA17_Chr2g0311361 | 94.118 | 68 | 4 | 0 | 49 | 116 | 31 | 98 | 1.46e-44 | 140 |
| Msa0252630 | MtrunA17_Chr2g0324101 | 59.615 | 52 | 19 | 1 | 65 | 114 | 4 | 55 | 1.53e-14 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0252630 | AT1G34245.1 | 47.222 | 108 | 51 | 2 | 13 | 115 | 12 | 118 | 5.95e-29 | 101 |
| Msa0252630 | AT1G71866.2 | 68.627 | 51 | 15 | 1 | 65 | 115 | 85 | 134 | 1.11e-21 | 84.0 |
| Msa0252630 | AT1G71866.1 | 68.627 | 51 | 15 | 1 | 65 | 115 | 121 | 170 | 4.30e-21 | 83.2 |
| Msa0252630 | AT2G20875.1 | 59.615 | 52 | 19 | 1 | 65 | 114 | 53 | 104 | 1.82e-14 | 64.3 |
Find 33 sgRNAs with CRISPR-Local
Find 41 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAACAATTATAGACAAAA+AGG | 0.294093 | 2_2:+44026259 | Msa0252630:CDS |
| ACATGTCACGTACCATGATT+TGG | 0.296793 | 2_2:-44026077 | None:intergenic |
| ACCTACCATGACCCTCTTGC+AGG | 0.342195 | 2_2:-44026472 | None:intergenic |
| AGGTTTCAGCAAATGTTCTA+TGG | 0.374663 | 2_2:+44026491 | Msa0252630:CDS |
| CATGATTTGGGATCACTCTA+AGG | 0.418584 | 2_2:-44026064 | None:intergenic |
| CATGTCACGTACCATGATTT+GGG | 0.459472 | 2_2:-44026076 | None:intergenic |
| AACAACTAGGAAAGATTTGT+GGG | 0.460826 | 2_2:-44026009 | None:intergenic |
| TAACAACTAGGAAAGATTTG+TGG | 0.480408 | 2_2:-44026010 | None:intergenic |
| TATGGCAGAGTCTTGCCCTA+TGG | 0.485018 | 2_2:+44026509 | Msa0252630:CDS |
| ACAATCTGGTATAGTGGAAC+CGG | 0.487458 | 2_2:-44026424 | None:intergenic |
| TTGTAGGAAGGAGCAAGAGA+AGG | 0.490101 | 2_2:+44026375 | Msa0252630:intron |
| GTTTACAGATGCATTTGTAA+AGG | 0.496002 | 2_2:+44026531 | Msa0252630:CDS |
| CCACATGCATGGGAACAATC+TGG | 0.502954 | 2_2:-44026438 | None:intergenic |
| CAAATGCATCTGTAAACCAT+AGG | 0.504305 | 2_2:-44026525 | None:intergenic |
| GTGAACATGGTCCACATGCA+TGG | 0.516739 | 2_2:-44026449 | None:intergenic |
| GTAATGGAACTCTATCCAAC+CGG | 0.520621 | 2_2:+44026405 | Msa0252630:CDS |
| ACCCTCTTGCAGGGTGAACA+TGG | 0.527410 | 2_2:-44026462 | None:intergenic |
| TCGATCAATTCGAGGGAACA+TGG | 0.534941 | 2_2:-44026563 | None:intergenic |
| AAGAGAAGGTAGCAATGTAA+TGG | 0.538637 | 2_2:+44026389 | Msa0252630:CDS |
| ATGGGAACAATCTGGTATAG+TGG | 0.545689 | 2_2:-44026430 | None:intergenic |
| TGAACATGGTCCACATGCAT+GGG | 0.559386 | 2_2:-44026448 | None:intergenic |
| AAATGCATCTGTAAACCATA+GGG | 0.566896 | 2_2:-44026524 | None:intergenic |
| CTTAGAGTGATCCCAAATCA+TGG | 0.569820 | 2_2:+44026065 | Msa0252630:CDS |
| CCGTGAAGAAAATAACAACT+AGG | 0.577940 | 2_2:-44026022 | None:intergenic |
| ATCATCGATCGATCAATTCG+AGG | 0.580959 | 2_2:-44026571 | None:intergenic |
| GACCATGTTCACCCTGCAAG+AGG | 0.594033 | 2_2:+44026460 | Msa0252630:CDS |
| TTCACCCTGCAAGAGGGTCA+TGG | 0.604879 | 2_2:+44026467 | Msa0252630:CDS |
| CCCTGCAAGAGGGTCATGGT+AGG | 0.608435 | 2_2:+44026471 | Msa0252630:CDS |
| TCATCGATCGATCAATTCGA+GGG | 0.611769 | 2_2:-44026570 | None:intergenic |
| CCTACCATGACCCTCTTGCA+GGG | 0.620825 | 2_2:-44026471 | None:intergenic |
| CCAGATTGTTCCCATGCATG+TGG | 0.632279 | 2_2:+44026438 | Msa0252630:CDS |
| TCTGGTATAGTGGAACCGGT+TGG | 0.657904 | 2_2:-44026420 | None:intergenic |
| ACCATGTTCACCCTGCAAGA+GGG | 0.681360 | 2_2:+44026461 | Msa0252630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAACAATTATAGACAAAA+AGG | + | chr2_2:44026259-44026278 | Msa0252630:CDS | 20.0% |
| ! | ACATCATTACATGATACTAT+GGG | - | chr2_2:44026154-44026173 | None:intergenic | 25.0% |
| ! | TACATCATTACATGATACTA+TGG | - | chr2_2:44026155-44026174 | None:intergenic | 25.0% |
| !!! | TTCCATATTTGTGTTTTTGT+AGG | + | chr2_2:44026359-44026378 | Msa0252630:intron | 25.0% |
| ! | TTCCTACAAAAACACAAATA+TGG | - | chr2_2:44026364-44026383 | None:intergenic | 25.0% |
| !!! | ATATTTGTGTTTTTGTAGGA+AGG | + | chr2_2:44026363-44026382 | Msa0252630:intron | 25.0% |
| AACAACTAGGAAAGATTTGT+GGG | - | chr2_2:44026012-44026031 | None:intergenic | 30.0% | |
| TAACAACTAGGAAAGATTTG+TGG | - | chr2_2:44026013-44026032 | None:intergenic | 30.0% | |
| !!! | CCTAGTTGTTATTTTCTTCA+CGG | + | chr2_2:44026022-44026041 | Msa0252630:CDS | 30.0% |
| ! | TTCTTCACGGTATTTTCTAT+TGG | + | chr2_2:44026035-44026054 | Msa0252630:CDS | 30.0% |
| AAACGAATGTGAAATACTCA+AGG | - | chr2_2:44026194-44026213 | None:intergenic | 30.0% | |
| AAGAAGTGAATGATCAATTG+TGG | + | chr2_2:44026335-44026354 | Msa0252630:intron | 30.0% | |
| AAATGCATCTGTAAACCATA+GGG | - | chr2_2:44026527-44026546 | None:intergenic | 30.0% | |
| GTTTACAGATGCATTTGTAA+AGG | + | chr2_2:44026531-44026550 | Msa0252630:CDS | 30.0% | |
| CCGTGAAGAAAATAACAACT+AGG | - | chr2_2:44026025-44026044 | None:intergenic | 35.0% | |
| ! | TCACGGTATTTTCTATTGGT+TGG | + | chr2_2:44026039-44026058 | Msa0252630:CDS | 35.0% |
| TGTAAGTGCATCAACTTATC+TGG | - | chr2_2:44026230-44026249 | None:intergenic | 35.0% | |
| AAGAGAAGGTAGCAATGTAA+TGG | + | chr2_2:44026389-44026408 | Msa0252630:CDS | 35.0% | |
| AGGTTTCAGCAAATGTTCTA+TGG | + | chr2_2:44026491-44026510 | Msa0252630:CDS | 35.0% | |
| CAAATGCATCTGTAAACCAT+AGG | - | chr2_2:44026528-44026547 | None:intergenic | 35.0% | |
| ! | CATGATTTGGGATCACTCTA+AGG | - | chr2_2:44026067-44026086 | None:intergenic | 40.0% |
| CTTAGAGTGATCCCAAATCA+TGG | + | chr2_2:44026065-44026084 | Msa0252630:CDS | 40.0% | |
| CATGTCACGTACCATGATTT+GGG | - | chr2_2:44026079-44026098 | None:intergenic | 40.0% | |
| ACATGTCACGTACCATGATT+TGG | - | chr2_2:44026080-44026099 | None:intergenic | 40.0% | |
| ! | GTAATGGAACTCTATCCAAC+CGG | + | chr2_2:44026405-44026424 | Msa0252630:CDS | 40.0% |
| ! | ACAATCTGGTATAGTGGAAC+CGG | - | chr2_2:44026427-44026446 | None:intergenic | 40.0% |
| ATGGGAACAATCTGGTATAG+TGG | - | chr2_2:44026433-44026452 | None:intergenic | 40.0% | |
| TTGTAGGAAGGAGCAAGAGA+AGG | + | chr2_2:44026375-44026394 | Msa0252630:intron | 45.0% | |
| TGAACATGGTCCACATGCAT+GGG | - | chr2_2:44026451-44026470 | None:intergenic | 45.0% | |
| ! | TCTGGTATAGTGGAACCGGT+TGG | - | chr2_2:44026423-44026442 | None:intergenic | 50.0% |
| CCACATGCATGGGAACAATC+TGG | - | chr2_2:44026441-44026460 | None:intergenic | 50.0% | |
| CCAGATTGTTCCCATGCATG+TGG | + | chr2_2:44026438-44026457 | Msa0252630:CDS | 50.0% | |
| GTGAACATGGTCCACATGCA+TGG | - | chr2_2:44026452-44026471 | None:intergenic | 50.0% | |
| ACCATGTTCACCCTGCAAGA+GGG | + | chr2_2:44026461-44026480 | Msa0252630:CDS | 50.0% | |
| TATGGCAGAGTCTTGCCCTA+TGG | + | chr2_2:44026509-44026528 | Msa0252630:CDS | 50.0% | |
| GACCATGTTCACCCTGCAAG+AGG | + | chr2_2:44026460-44026479 | Msa0252630:CDS | 55.0% | |
| ACCCTCTTGCAGGGTGAACA+TGG | - | chr2_2:44026465-44026484 | None:intergenic | 55.0% | |
| TTCACCCTGCAAGAGGGTCA+TGG | + | chr2_2:44026467-44026486 | Msa0252630:CDS | 55.0% | |
| CCTACCATGACCCTCTTGCA+GGG | - | chr2_2:44026474-44026493 | None:intergenic | 55.0% | |
| ACCTACCATGACCCTCTTGC+AGG | - | chr2_2:44026475-44026494 | None:intergenic | 55.0% | |
| CCCTGCAAGAGGGTCATGGT+AGG | + | chr2_2:44026471-44026490 | Msa0252630:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 44025987 | 44026581 | 44025987 | ID=Msa0252630;Name=Msa0252630 |
| chr2_2 | mRNA | 44025987 | 44026581 | 44025987 | ID=Msa0252630-mRNA-1;Parent=Msa0252630;Name=Msa0252630-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|3|0|116 |
| chr2_2 | exon | 44025987 | 44026086 | 44025987 | ID=Msa0252630-mRNA-1:exon:13560;Parent=Msa0252630-mRNA-1 |
| chr2_2 | exon | 44026231 | 44026280 | 44026231 | ID=Msa0252630-mRNA-1:exon:13561;Parent=Msa0252630-mRNA-1 |
| chr2_2 | exon | 44026381 | 44026581 | 44026381 | ID=Msa0252630-mRNA-1:exon:13562;Parent=Msa0252630-mRNA-1 |
| chr2_2 | CDS | 44025987 | 44026086 | 44025987 | ID=Msa0252630-mRNA-1:cds;Parent=Msa0252630-mRNA-1 |
| chr2_2 | CDS | 44026231 | 44026280 | 44026231 | ID=Msa0252630-mRNA-1:cds;Parent=Msa0252630-mRNA-1 |
| chr2_2 | CDS | 44026381 | 44026581 | 44026381 | ID=Msa0252630-mRNA-1:cds;Parent=Msa0252630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
