Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0153900 | XP_024630184.1 | 85.294 | 136 | 20 | 0 | 4 | 139 | 59 | 194 | 4.21e-77 | 237 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0153900 | A0A072TJ78 | 86.029 | 136 | 19 | 0 | 4 | 139 | 208 | 343 | 6.64e-77 | 242 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0153900 | Msa0564510 | 0.802933 | 4.434438e-49 | -8.615850e-47 |
Msa0153900 | Msa0885280 | 0.817043 | 4.045233e-52 | -8.615850e-47 |
Msa0153900 | Msa0923540 | 0.821928 | 3.110963e-53 | -8.615850e-47 |
Msa0153900 | Msa1075080 | -0.806562 | 7.743955e-50 | -8.615850e-47 |
Msa0153900 | Msa1136090 | 0.809641 | 1.711544e-50 | -8.615850e-47 |
Msa0153900 | Msa1327770 | 0.805384 | 1.370144e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0153900 | MtrunA17_Chr1g0164121 | 83.824 | 136 | 22 | 0 | 4 | 139 | 172 | 307 | 6.17e-78 | 233 |
Msa0153900 | MtrunA17_Chr8g0359891 | 86.131 | 137 | 19 | 0 | 4 | 140 | 2801 | 2937 | 1.33e-75 | 244 |
Msa0153900 | MtrunA17_Chr8g0359891 | 42.963 | 135 | 75 | 2 | 5 | 139 | 1792 | 1924 | 5.69e-23 | 94.0 |
Msa0153900 | MtrunA17_Chr8g0359891 | 42.222 | 135 | 76 | 2 | 5 | 139 | 2288 | 2420 | 1.62e-21 | 89.7 |
Msa0153900 | MtrunA17_Chr8g0359891 | 38.571 | 140 | 81 | 2 | 2 | 139 | 1268 | 1404 | 2.43e-20 | 86.3 |
Msa0153900 | MtrunA17_Chr8g0359891 | 37.143 | 140 | 83 | 2 | 2 | 139 | 427 | 563 | 6.77e-20 | 85.1 |
Msa0153900 | MtrunA17_Chr1g0164011 | 85.926 | 135 | 19 | 0 | 5 | 139 | 2361 | 2495 | 2.82e-75 | 243 |
Msa0153900 | MtrunA17_Chr1g0164011 | 45.185 | 135 | 72 | 2 | 5 | 139 | 1840 | 1972 | 1.00e-24 | 99.0 |
Msa0153900 | MtrunA17_Chr1g0164011 | 37.143 | 140 | 83 | 2 | 2 | 139 | 1393 | 1529 | 2.99e-19 | 83.2 |
Msa0153900 | MtrunA17_Chr1g0163891 | 87.500 | 136 | 17 | 0 | 5 | 140 | 2972 | 3107 | 2.92e-75 | 243 |
Msa0153900 | MtrunA17_Chr1g0163891 | 43.182 | 132 | 73 | 2 | 8 | 139 | 1932 | 2061 | 1.02e-21 | 90.1 |
Msa0153900 | MtrunA17_Chr1g0163891 | 43.182 | 132 | 73 | 2 | 8 | 139 | 2454 | 2583 | 3.29e-21 | 89.0 |
Msa0153900 | MtrunA17_Chr1g0163891 | 38.571 | 140 | 81 | 2 | 2 | 139 | 1405 | 1541 | 3.80e-20 | 85.9 |
Msa0153900 | MtrunA17_Chr1g0170881 | 86.667 | 135 | 18 | 0 | 5 | 139 | 1915 | 2049 | 5.34e-75 | 242 |
Msa0153900 | MtrunA17_Chr1g0170881 | 40.000 | 140 | 79 | 2 | 2 | 139 | 1390 | 1526 | 6.05e-21 | 88.2 |
Msa0153900 | MtrunA17_Chr1g0163761 | 87.500 | 136 | 17 | 0 | 5 | 140 | 2439 | 2574 | 1.21e-74 | 241 |
Msa0153900 | MtrunA17_Chr1g0163761 | 43.704 | 135 | 74 | 2 | 5 | 139 | 1918 | 2050 | 1.86e-24 | 98.2 |
Msa0153900 | MtrunA17_Chr1g0163761 | 37.857 | 140 | 82 | 2 | 2 | 139 | 1394 | 1530 | 1.74e-18 | 80.9 |
Msa0153900 | MtrunA17_Chr1g0172231 | 85.401 | 137 | 20 | 0 | 4 | 140 | 1270 | 1406 | 3.44e-74 | 240 |
Msa0153900 | MtrunA17_Chr1g0172231 | 42.553 | 141 | 79 | 2 | 5 | 145 | 750 | 888 | 4.16e-24 | 97.1 |
Msa0153900 | MtrunA17_Chr1g0172231 | 37.857 | 140 | 82 | 2 | 2 | 139 | 226 | 362 | 6.55e-20 | 85.1 |
Msa0153900 | MtrunA17_Chr1g0163931 | 86.765 | 136 | 18 | 0 | 5 | 140 | 1913 | 2048 | 5.14e-73 | 237 |
Msa0153900 | MtrunA17_Chr1g0163931 | 40.000 | 140 | 79 | 2 | 2 | 139 | 1391 | 1527 | 2.47e-21 | 89.4 |
Msa0153900 | MtrunA17_Chr1g0172051 | 82.353 | 136 | 24 | 0 | 5 | 140 | 2951 | 3086 | 2.74e-70 | 229 |
Msa0153900 | MtrunA17_Chr1g0172051 | 42.222 | 135 | 76 | 2 | 5 | 139 | 2432 | 2564 | 5.23e-22 | 91.3 |
Msa0153900 | MtrunA17_Chr1g0172051 | 37.857 | 140 | 82 | 2 | 2 | 139 | 1391 | 1527 | 2.16e-19 | 83.6 |
Msa0153900 | MtrunA17_Chr1g0172051 | 34.286 | 140 | 87 | 2 | 2 | 139 | 1908 | 2044 | 4.18e-19 | 82.8 |
Msa0153900 | MtrunA17_Chr1g0167981 | 80.000 | 135 | 27 | 0 | 5 | 139 | 2955 | 3089 | 2.02e-67 | 221 |
Msa0153900 | MtrunA17_Chr1g0167981 | 40.426 | 141 | 77 | 2 | 5 | 139 | 1912 | 2051 | 2.25e-24 | 97.8 |
Msa0153900 | MtrunA17_Chr1g0167981 | 41.549 | 142 | 74 | 3 | 2 | 139 | 1390 | 1526 | 6.52e-23 | 93.6 |
Msa0153900 | MtrunA17_Chr1g0167981 | 40.146 | 137 | 79 | 2 | 5 | 139 | 2437 | 2572 | 7.55e-22 | 90.5 |
Msa0153900 | MtrunA17_Chr6g0474571 | 82.353 | 136 | 23 | 1 | 5 | 139 | 2958 | 3093 | 5.60e-67 | 219 |
Msa0153900 | MtrunA17_Chr6g0474571 | 40.741 | 135 | 78 | 2 | 5 | 139 | 1916 | 2048 | 6.78e-22 | 90.9 |
Msa0153900 | MtrunA17_Chr6g0474571 | 40.741 | 135 | 78 | 2 | 5 | 139 | 2436 | 2568 | 6.78e-22 | 90.9 |
Msa0153900 | MtrunA17_Chr6g0474571 | 40.288 | 139 | 80 | 2 | 2 | 139 | 1392 | 1528 | 3.95e-21 | 88.6 |
Msa0153900 | MtrunA17_Chr2g0323691 | 82.963 | 135 | 23 | 0 | 5 | 139 | 2956 | 3090 | 1.21e-64 | 213 |
Msa0153900 | MtrunA17_Chr2g0323691 | 39.259 | 135 | 80 | 2 | 5 | 139 | 1916 | 2048 | 2.19e-21 | 89.4 |
Msa0153900 | MtrunA17_Chr2g0323691 | 39.098 | 133 | 78 | 2 | 7 | 139 | 2438 | 2567 | 3.58e-21 | 88.6 |
Msa0153900 | MtrunA17_Chr2g0323691 | 33.113 | 151 | 93 | 3 | 2 | 147 | 1392 | 1539 | 1.39e-18 | 81.3 |
Msa0153900 | MtrunA17_Chr1g0163801 | 86.726 | 113 | 15 | 0 | 5 | 117 | 308 | 420 | 3.64e-64 | 202 |
Msa0153900 | MtrunA17_Chr1g0171091 | 71.642 | 134 | 36 | 1 | 8 | 139 | 175 | 308 | 3.04e-57 | 181 |
Msa0153900 | MtrunA17_Chr1g0171081 | 73.469 | 98 | 26 | 0 | 42 | 139 | 1 | 98 | 3.57e-48 | 150 |
Msa0153900 | MtrunA17_Chr2g0313481 | 37.762 | 143 | 88 | 1 | 1 | 142 | 1413 | 1555 | 1.15e-25 | 101 |
Msa0153900 | MtrunA17_Chr2g0313331 | 35.664 | 143 | 91 | 1 | 1 | 142 | 1090 | 1232 | 4.52e-25 | 99.8 |
Msa0153900 | MtrunA17_Chr2g0313541 | 38.519 | 135 | 82 | 1 | 1 | 134 | 1405 | 1539 | 8.70e-25 | 99.0 |
Msa0153900 | MtrunA17_Chr8g0348251 | 44.056 | 143 | 72 | 4 | 4 | 139 | 126 | 267 | 2.14e-24 | 97.8 |
Msa0153900 | MtrunA17_Chr8g0348251 | 35.172 | 145 | 89 | 2 | 5 | 144 | 635 | 779 | 3.30e-18 | 80.1 |
Msa0153900 | MtrunA17_Chr1g0174521 | 43.939 | 132 | 72 | 2 | 8 | 139 | 35 | 164 | 2.34e-24 | 94.4 |
Msa0153900 | MtrunA17_Chr2g0314301 | 38.235 | 136 | 83 | 1 | 8 | 142 | 1415 | 1550 | 2.65e-24 | 97.8 |
Msa0153900 | MtrunA17_Chr2g0313351 | 38.060 | 134 | 83 | 0 | 8 | 141 | 1408 | 1541 | 4.87e-24 | 97.1 |
Msa0153900 | MtrunA17_Chr2g0313421 | 38.060 | 134 | 83 | 0 | 8 | 141 | 515 | 648 | 6.49e-24 | 96.3 |
Msa0153900 | MtrunA17_Chr2g0313591 | 37.143 | 140 | 87 | 1 | 1 | 139 | 1398 | 1537 | 8.38e-24 | 96.3 |
Msa0153900 | MtrunA17_Chr2g0313311 | 37.313 | 134 | 84 | 0 | 8 | 141 | 1385 | 1518 | 6.51e-23 | 93.6 |
Msa0153900 | MtrunA17_Chr2g0313471 | 34.532 | 139 | 90 | 1 | 5 | 142 | 122 | 260 | 1.11e-22 | 90.1 |
Msa0153900 | MtrunA17_Chr8g0348201 | 40.141 | 142 | 79 | 4 | 4 | 139 | 574 | 715 | 7.83e-22 | 90.5 |
Msa0153900 | MtrunA17_Chr8g0348201 | 37.143 | 140 | 83 | 3 | 5 | 139 | 1085 | 1224 | 7.53e-21 | 87.8 |
Msa0153900 | MtrunA17_Chr8g0348201 | 29.801 | 151 | 86 | 2 | 10 | 140 | 1359 | 1509 | 3.63e-11 | 60.1 |
Msa0153900 | MtrunA17_Chr1g0172161 | 38.571 | 140 | 81 | 2 | 2 | 139 | 431 | 567 | 1.18e-20 | 87.0 |
Msa0153900 | MtrunA17_Chr2g0314151 | 38.571 | 140 | 80 | 3 | 2 | 139 | 7 | 142 | 1.60e-20 | 82.0 |
Msa0153900 | MtrunA17_Chr1g0163991 | 35.714 | 140 | 85 | 2 | 2 | 139 | 431 | 567 | 2.75e-20 | 86.3 |
Msa0153900 | MtrunA17_Chr1g0163991 | 36.170 | 141 | 85 | 2 | 2 | 140 | 1131 | 1268 | 4.20e-19 | 82.8 |
Msa0153900 | MtrunA17_Chr1g0172071 | 34.286 | 140 | 87 | 2 | 2 | 139 | 125 | 261 | 7.32e-20 | 82.8 |
Msa0153900 | MtrunA17_Chr1g0172141 | 37.143 | 140 | 83 | 2 | 2 | 139 | 1394 | 1530 | 7.82e-20 | 84.7 |
Msa0153900 | MtrunA17_Chr1g0172101 | 36.429 | 140 | 84 | 2 | 2 | 139 | 199 | 335 | 4.05e-19 | 82.0 |
Msa0153900 | MtrunA17_Chr1g0174511 | 37.143 | 140 | 83 | 2 | 2 | 139 | 1389 | 1525 | 2.54e-18 | 80.5 |
Msa0153900 | MtrunA17_Chr3g0081941 | 34.722 | 144 | 88 | 4 | 3 | 142 | 1133 | 1274 | 1.86e-17 | 78.2 |
Msa0153900 | MtrunA17_Chr2g0313491 | 33.099 | 142 | 92 | 1 | 4 | 142 | 1366 | 1507 | 2.28e-17 | 77.8 |
Msa0153900 | MtrunA17_Chr1g0163791 | 33.571 | 140 | 88 | 2 | 2 | 139 | 1389 | 1525 | 2.07e-16 | 75.1 |
Msa0153900 | MtrunA17_Chr7g0255111 | 29.134 | 127 | 88 | 1 | 5 | 131 | 1289 | 1413 | 2.22e-14 | 69.3 |
Msa0153900 | MtrunA17_Chr2g0314131 | 45.122 | 82 | 44 | 1 | 5 | 86 | 74 | 154 | 3.27e-13 | 63.2 |
Msa0153900 | MtrunA17_Chr4g0011631 | 35.075 | 134 | 85 | 1 | 3 | 136 | 251 | 382 | 1.78e-12 | 63.5 |
Msa0153900 | MtrunA17_Chr4g0011661 | 33.099 | 142 | 88 | 2 | 3 | 142 | 251 | 387 | 1.80e-11 | 60.8 |
Msa0153900 | MtrunA17_Chr7g0255401 | 31.206 | 141 | 88 | 3 | 3 | 134 | 1110 | 1250 | 7.88e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 22 sgRNAs with CRISPR-Local
Find 22 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGCTTCGTTTCGTCGTTAA+AGG | 0.182894 | 1_4:+17932470 | Msa0153900:CDS |
GAACAAATGTTCACAGAAAA+AGG | 0.255110 | 1_4:+17932605 | Msa0153900:CDS |
AAGTAAATTCCAAGTATTCC+AGG | 0.346947 | 1_4:-17932391 | None:intergenic |
ATTTGAAAACCTGGAATACT+TGG | 0.360265 | 1_4:+17932382 | Msa0153900:CDS |
ACGACGAAACGAAGCAAAGA+TGG | 0.445701 | 1_4:-17932464 | None:intergenic |
GTTTGAGAAGCTTCTGCTAT+GGG | 0.448087 | 1_4:+17932423 | Msa0153900:CDS |
GATGAGAAGATCTTCATTTG+AGG | 0.504619 | 1_4:-17932497 | None:intergenic |
AGTTTGAGAAGCTTCTGCTA+TGG | 0.535941 | 1_4:+17932422 | Msa0153900:CDS |
CAGGTTGATCTATTTGAAAG+TGG | 0.540090 | 1_4:+17932217 | Msa0153900:CDS |
TGACGATTGCGATGATGCAC+AGG | 0.541212 | 1_4:+17932198 | None:intergenic |
CGACGAAACGAAGCAAAGAT+GGG | 0.541623 | 1_4:-17932463 | None:intergenic |
AAACATCGTATTTGAAAACC+TGG | 0.549598 | 1_4:+17932373 | Msa0153900:CDS |
ACAGTAGCACCGTGCCTCAC+AGG | 0.560430 | 1_4:+17932527 | Msa0153900:CDS |
GAAGAAAATATGCGATGGAA+AGG | 0.574852 | 1_4:+17932563 | Msa0153900:CDS |
TGGGAGAAGAAAATATGCGA+TGG | 0.606913 | 1_4:+17932558 | Msa0153900:CDS |
AACTAACTGTGAGAAGATGT+TGG | 0.608661 | 1_4:+17932316 | Msa0153900:CDS |
ACATCAATTCCTGTGAGGCA+CGG | 0.617104 | 1_4:-17932536 | None:intergenic |
TGCCTCACAGGAATTGATGT+GGG | 0.634743 | 1_4:+17932539 | Msa0153900:CDS |
GAAGCTTCTCAAACTTGACA+AGG | 0.638660 | 1_4:-17932414 | None:intergenic |
GTGCCTCACAGGAATTGATG+TGG | 0.642171 | 1_4:+17932538 | Msa0153900:CDS |
CTCCCACATCAATTCCTGTG+AGG | 0.674296 | 1_4:-17932541 | None:intergenic |
GCACGGTGCTACTGTGAGTG+CGG | 0.676471 | 1_4:-17932519 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
GATTGATGAAGAAAAAACAG+AGG | + | chr1_4:17932349-17932368 | Msa0153900:CDS | 30.0% | |
AAACATCGTATTTGAAAACC+TGG | + | chr1_4:17932373-17932392 | Msa0153900:CDS | 30.0% | |
ATTTGAAAACCTGGAATACT+TGG | + | chr1_4:17932382-17932401 | Msa0153900:CDS | 30.0% | |
AAGTAAATTCCAAGTATTCC+AGG | - | chr1_4:17932394-17932413 | None:intergenic | 30.0% | |
GAACAAATGTTCACAGAAAA+AGG | + | chr1_4:17932605-17932624 | Msa0153900:CDS | 30.0% | |
!! | CAGGTTGATCTATTTGAAAG+TGG | + | chr1_4:17932217-17932236 | Msa0153900:CDS | 35.0% |
AACTAACTGTGAGAAGATGT+TGG | + | chr1_4:17932316-17932335 | Msa0153900:CDS | 35.0% | |
GATGAGAAGATCTTCATTTG+AGG | - | chr1_4:17932500-17932519 | None:intergenic | 35.0% | |
GAAGAAAATATGCGATGGAA+AGG | + | chr1_4:17932563-17932582 | Msa0153900:CDS | 35.0% | |
GAAGCTTCTCAAACTTGACA+AGG | - | chr1_4:17932417-17932436 | None:intergenic | 40.0% | |
AGTTTGAGAAGCTTCTGCTA+TGG | + | chr1_4:17932422-17932441 | Msa0153900:CDS | 40.0% | |
GTTTGAGAAGCTTCTGCTAT+GGG | + | chr1_4:17932423-17932442 | Msa0153900:CDS | 40.0% | |
TTGCTTCGTTTCGTCGTTAA+AGG | + | chr1_4:17932470-17932489 | Msa0153900:CDS | 40.0% | |
TGGGAGAAGAAAATATGCGA+TGG | + | chr1_4:17932558-17932577 | Msa0153900:CDS | 40.0% | |
CGACGAAACGAAGCAAAGAT+GGG | - | chr1_4:17932466-17932485 | None:intergenic | 45.0% | |
ACGACGAAACGAAGCAAAGA+TGG | - | chr1_4:17932467-17932486 | None:intergenic | 45.0% | |
ACATCAATTCCTGTGAGGCA+CGG | - | chr1_4:17932539-17932558 | None:intergenic | 45.0% | |
TGCCTCACAGGAATTGATGT+GGG | + | chr1_4:17932539-17932558 | Msa0153900:CDS | 45.0% | |
GTGCCTCACAGGAATTGATG+TGG | + | chr1_4:17932538-17932557 | Msa0153900:CDS | 50.0% | |
CTCCCACATCAATTCCTGTG+AGG | - | chr1_4:17932544-17932563 | None:intergenic | 50.0% | |
!! | GCACGGTGCTACTGTGAGTG+CGG | - | chr1_4:17932522-17932541 | None:intergenic | 60.0% |
ACAGTAGCACCGTGCCTCAC+AGG | + | chr1_4:17932527-17932546 | Msa0153900:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 17932209 | 17932652 | 17932209 | ID=Msa0153900;Name=Msa0153900 |
chr1_4 | mRNA | 17932209 | 17932652 | 17932209 | ID=Msa0153900-mRNA-1;Parent=Msa0153900;Name=Msa0153900-mRNA-1;_AED=0.48;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|147 |
chr1_4 | exon | 17932209 | 17932652 | 17932209 | ID=Msa0153900-mRNA-1:exon:6748;Parent=Msa0153900-mRNA-1 |
chr1_4 | CDS | 17932209 | 17932652 | 17932209 | ID=Msa0153900-mRNA-1:cds;Parent=Msa0153900-mRNA-1 |
Gene Sequence |
Protein sequence |