AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1075080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1075080 MtrunA17_Chr7g0258291 100.000 122 0 0 1 122 1 122 8.78e-88 250
Msa1075080 MtrunA17_Chr4g0018141 98.361 122 2 0 1 122 1 122 5.61e-87 248
Msa1075080 MtrunA17_Chr2g0317541 97.500 120 3 0 3 122 4 123 7.78e-84 240
Msa1075080 MtrunA17_Chr1g0197931 97.500 120 3 0 3 122 4 123 7.78e-84 240
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1075080 AT3G47370.3 89.344 122 13 0 1 122 1 122 2.33e-76 222
Msa1075080 AT3G47370.2 89.344 122 13 0 1 122 1 122 2.33e-76 222
Msa1075080 AT3G47370.1 89.344 122 13 0 1 122 1 122 2.33e-76 222
Msa1075080 AT5G62300.1 89.256 121 13 0 2 122 4 124 2.00e-75 219
Msa1075080 AT5G62300.2 89.256 121 13 0 2 122 4 124 2.00e-75 219
Msa1075080 AT3G45030.1 89.256 121 13 0 2 122 4 124 2.00e-75 219

Find 54 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTGAGTGAACAGGAATT+AGG 0.254898 7_2:-73166509 None:intergenic
TATACTCTGAACAAACAAAA+TGG 0.348269 7_2:+73166533 Msa1075080:exon
GTTATTAGTTTGTGCTGATT+TGG 0.351954 7_2:+73166744 Msa1075080:intron
AAAGGGTGATCCTAATCTTA+TGG 0.356442 7_2:-73166611 None:intergenic
GGATTCCTCCAAACCGGGCT+TGG 0.358015 7_2:-73166577 None:intergenic
TTCTCCACAAGGAGTCTTCC+TGG 0.359877 7_2:-73166842 None:intergenic
CTCTTGGGATTCCTCCAAAC+CGG 0.365030 7_2:-73166583 None:intergenic
AACTGAGTGAACAGGAATTA+GGG 0.381983 7_2:-73166508 None:intergenic
AATCTTATGGATCTGCTCTT+GGG 0.403761 7_2:-73166598 None:intergenic
TTCCTCCAAACCGGGCTTGG+TGG 0.404028 7_2:-73166574 None:intergenic
TAATCTTATGGATCTGCTCT+TGG 0.405883 7_2:-73166599 None:intergenic
GAAACCCACCAAGCCCGGTT+TGG 0.427075 7_2:+73166569 Msa1075080:CDS
TCCTCCAAACCGGGCTTGGT+GGG 0.432222 7_2:-73166573 None:intergenic
GTGATATGAAGAACCTTAGT+AGG 0.436083 7_2:-73166817 None:intergenic
TTAGAGTGAAGGGTCCTGTT+AGG 0.436691 7_2:+73166791 Msa1075080:CDS
ACCTTAGTAGGCATCCTAAC+AGG 0.444549 7_2:-73166805 None:intergenic
GTAATCTGTTTAACAACATC+CGG 0.444922 7_2:-73167847 None:intergenic
AAGAGCAGATCCATAAGATT+AGG 0.460004 7_2:+73166601 Msa1075080:CDS
TTGTTGCAGGTACCAACACC+TGG 0.473020 7_2:+73167773 Msa1075080:intron
ACCAGGTTCAATGGTGATAG+AGG 0.475816 7_2:-73167869 None:intergenic
TGAACCTGGTGTCGAGGTTG+AGG 0.476196 7_2:+73167882 Msa1075080:CDS
TTTGACATGCTTGGAGGAAA+GGG 0.476236 7_2:-73166628 None:intergenic
AACCTCGACACCAGGTTCAA+TGG 0.477591 7_2:-73167878 None:intergenic
AGTATACAAACTGAGTGAAC+AGG 0.482174 7_2:-73166516 None:intergenic
GTTTGTGCTGATTTGGTTCG+TGG 0.496204 7_2:+73166751 Msa1075080:intron
TTTGTTATTTGGGACAAAGT+TGG 0.502217 7_2:+73167990 Msa1075080:three_prime_UTR
ACCCACCAAGCCCGGTTTGG+AGG 0.507965 7_2:+73166572 Msa1075080:CDS
AGGAAGACTCCTTGTGGAGA+AGG 0.508893 7_2:+73166844 Msa1075080:CDS
TCCTGTTAGGATGCCTACTA+AGG 0.508963 7_2:+73166804 Msa1075080:CDS
GCGATGAAACCCACCAAGCC+CGG 0.517696 7_2:+73166564 Msa1075080:CDS
TCTTGGGATTCCTCCAAACC+GGG 0.525935 7_2:-73166582 None:intergenic
CGCCGCAGCTAGTGAATCAA+AGG 0.529519 7_2:-73166485 None:intergenic
ACCTCTATCACCATTGAACC+TGG 0.531123 7_2:+73167868 Msa1075080:CDS
TGATTTGGTTCGTGGCGCTA+AGG 0.536928 7_2:+73166759 Msa1075080:CDS
CACCATTGAACCTGGTGTCG+AGG 0.559437 7_2:+73167876 Msa1075080:CDS
CTCAAATCTATCCCAGGTGT+TGG 0.560757 7_2:-73167785 None:intergenic
CGATAACTCTCTTGTGCACA+CGG 0.563868 7_2:-73167810 None:intergenic
GGATAAGCATCTTAGAGTGA+AGG 0.564807 7_2:+73166780 Msa1075080:CDS
CTCCTTTGATTCACTAGCTG+CGG 0.568136 7_2:+73166483 Msa1075080:five_prime_UTR
ATTAAGCATGAAGTTTCTCA+AGG 0.578234 7_2:-73168053 None:intergenic
GATAAGCATCTTAGAGTGAA+GGG 0.578400 7_2:+73166781 Msa1075080:CDS
TAATCTGTTTAACAACATCC+GGG 0.579383 7_2:-73167846 None:intergenic
GTAACCTCAACCTCGACACC+AGG 0.583580 7_2:-73167886 None:intergenic
TATCGACCTCTACAGTTCCC+CGG 0.587478 7_2:+73167828 Msa1075080:CDS
CAACATCCGGGGAACTGTAG+AGG 0.598794 7_2:-73167834 None:intergenic
AGGAGACAGAAATCGAAGGA+AGG 0.602048 7_2:-73166465 None:intergenic
ACGGAGCTCAAATCTATCCC+AGG 0.605082 7_2:-73167791 None:intergenic
AGGTTCTTCATATCACTACC+AGG 0.631821 7_2:+73166824 Msa1075080:CDS
TCAAAGGAGACAGAAATCGA+AGG 0.634980 7_2:-73166469 None:intergenic
TCAAGATCAAGCATCTGCAA+TGG 0.646485 7_2:-73167908 None:intergenic
AATGAAATACCTTCTCCACA+AGG 0.646547 7_2:-73166853 None:intergenic
ACTACCAGGAAGACTCCTTG+TGG 0.667890 7_2:+73166838 Msa1075080:CDS
TGTTGCAGGTACCAACACCT+GGG 0.671114 7_2:+73167774 Msa1075080:intron
AATCTGTTTAACAACATCCG+GGG 0.718061 7_2:-73167845 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATGATTATTTGATGAA+AGG + chr7_2:73166902-73166921 Msa1075080:intron 15.0%
!!! TTCTCTCTAAAATAATAAAT+GGG + chr7_2:73167205-73167224 Msa1075080:intron 15.0%
!!! TTTTTGATAGTTTTGTTATT+TGG + chr7_2:73167979-73167998 Msa1075080:three_prime_UTR 15.0%
!!! TTTTGATAGTTTTGTTATTT+GGG + chr7_2:73167980-73167999 Msa1075080:three_prime_UTR 15.0%
!!! TTTTATGATTATTTGATGAA+AGG + chr7_2:73166902-73166921 Msa1075080:intron 15.0%
!!! TTCTCTCTAAAATAATAAAT+GGG + chr7_2:73167205-73167224 Msa1075080:intron 15.0%
!!! TTTTTGATAGTTTTGTTATT+TGG + chr7_2:73167979-73167998 Msa1075080:three_prime_UTR 15.0%
!!! TTTTGATAGTTTTGTTATTT+GGG + chr7_2:73167980-73167999 Msa1075080:three_prime_UTR 15.0%
!!! GTTCTCTCTAAAATAATAAA+TGG + chr7_2:73167204-73167223 Msa1075080:intron 20.0%
!!! TTTAATTCAGTTTTGTTGAA+TGG + chr7_2:73167405-73167424 Msa1075080:intron 20.0%
!! ATAATAACAAAATGCAAATG+AGG - chr7_2:73167578-73167597 None:intergenic 20.0%
!! AGACATAACAAGTTAAAAAT+GGG - chr7_2:73167935-73167954 None:intergenic 20.0%
!! AAAACTATCAAAAATACAGA+GGG - chr7_2:73167973-73167992 None:intergenic 20.0%
!!! GTTCTCTCTAAAATAATAAA+TGG + chr7_2:73167204-73167223 Msa1075080:intron 20.0%
!!! TTTAATTCAGTTTTGTTGAA+TGG + chr7_2:73167405-73167424 Msa1075080:intron 20.0%
!! ATAATAACAAAATGCAAATG+AGG - chr7_2:73167578-73167597 None:intergenic 20.0%
!! AGACATAACAAGTTAAAAAT+GGG - chr7_2:73167935-73167954 None:intergenic 20.0%
!! AAAACTATCAAAAATACAGA+GGG - chr7_2:73167973-73167992 None:intergenic 20.0%
! TATACTCTGAACAAACAAAA+TGG + chr7_2:73166533-73166552 Msa1075080:exon 25.0%
!! TGAGAGCATAAAAAACATAA+AGG - chr7_2:73166686-73166705 None:intergenic 25.0%
!! TTTCATTGTGTTCTATCTTT+TGG + chr7_2:73167279-73167298 Msa1075080:intron 25.0%
! AATTATCCTACAACCTTAAT+TGG + chr7_2:73167307-73167326 Msa1075080:intron 25.0%
!!! TGTTTCTGAACAAATTTTGA+AGG + chr7_2:73167450-73167469 Msa1075080:intron 25.0%
!!! GCATTTTGTTATTATGCTAT+TGG + chr7_2:73167583-73167602 Msa1075080:intron 25.0%
! CAGACATAACAAGTTAAAAA+TGG - chr7_2:73167936-73167955 None:intergenic 25.0%
! CAAAACTATCAAAAATACAG+AGG - chr7_2:73167974-73167993 None:intergenic 25.0%
! TATACTCTGAACAAACAAAA+TGG + chr7_2:73166533-73166552 Msa1075080:exon 25.0%
!! TGAGAGCATAAAAAACATAA+AGG - chr7_2:73166686-73166705 None:intergenic 25.0%
!! TTTCATTGTGTTCTATCTTT+TGG + chr7_2:73167279-73167298 Msa1075080:intron 25.0%
! AATTATCCTACAACCTTAAT+TGG + chr7_2:73167307-73167326 Msa1075080:intron 25.0%
!!! TGTTTCTGAACAAATTTTGA+AGG + chr7_2:73167450-73167469 Msa1075080:intron 25.0%
!!! GCATTTTGTTATTATGCTAT+TGG + chr7_2:73167583-73167602 Msa1075080:intron 25.0%
! CAGACATAACAAGTTAAAAA+TGG - chr7_2:73167936-73167955 None:intergenic 25.0%
! CAAAACTATCAAAAATACAG+AGG - chr7_2:73167974-73167993 None:intergenic 25.0%
AAGTGAAAGTTGAAATGTCA+GGG - chr7_2:73166715-73166734 None:intergenic 30.0%
!! GTTATTAGTTTGTGCTGATT+TGG + chr7_2:73166744-73166763 Msa1075080:intron 30.0%
ATTTGATGAAAGGTAGTCAA+TGG + chr7_2:73166912-73166931 Msa1075080:intron 30.0%
AGATTAGAAACATCATTGAG+AGG + chr7_2:73166940-73166959 Msa1075080:intron 30.0%
GATTAGAAACATCATTGAGA+GGG + chr7_2:73166941-73166960 Msa1075080:intron 30.0%
! GTTTTTCTAAGCTCCTAATA+TGG + chr7_2:73167069-73167088 Msa1075080:intron 30.0%
TCCTAATATGGCTTACAAAT+GGG + chr7_2:73167081-73167100 Msa1075080:intron 30.0%
!!! CTAGTTCTAGTTTTTGCAAT+TGG + chr7_2:73167238-73167257 Msa1075080:intron 30.0%
!! TATGATAGTGCTATGTTTTC+TGG + chr7_2:73167652-73167671 Msa1075080:intron 30.0%
TAATCTGTTTAACAACATCC+GGG - chr7_2:73167849-73167868 None:intergenic 30.0%
GTAATCTGTTTAACAACATC+CGG - chr7_2:73167850-73167869 None:intergenic 30.0%
!! TTTGTTATTTGGGACAAAGT+TGG + chr7_2:73167990-73168009 Msa1075080:three_prime_UTR 30.0%
ATTAAGCATGAAGTTTCTCA+AGG - chr7_2:73168056-73168075 None:intergenic 30.0%
AAGTGAAAGTTGAAATGTCA+GGG - chr7_2:73166715-73166734 None:intergenic 30.0%
!! GTTATTAGTTTGTGCTGATT+TGG + chr7_2:73166744-73166763 Msa1075080:intron 30.0%
ATTTGATGAAAGGTAGTCAA+TGG + chr7_2:73166912-73166931 Msa1075080:intron 30.0%
AGATTAGAAACATCATTGAG+AGG + chr7_2:73166940-73166959 Msa1075080:intron 30.0%
GATTAGAAACATCATTGAGA+GGG + chr7_2:73166941-73166960 Msa1075080:intron 30.0%
! GTTTTTCTAAGCTCCTAATA+TGG + chr7_2:73167069-73167088 Msa1075080:intron 30.0%
TCCTAATATGGCTTACAAAT+GGG + chr7_2:73167081-73167100 Msa1075080:intron 30.0%
!!! CTAGTTCTAGTTTTTGCAAT+TGG + chr7_2:73167238-73167257 Msa1075080:intron 30.0%
!! TATGATAGTGCTATGTTTTC+TGG + chr7_2:73167652-73167671 Msa1075080:intron 30.0%
TAATCTGTTTAACAACATCC+GGG - chr7_2:73167849-73167868 None:intergenic 30.0%
GTAATCTGTTTAACAACATC+CGG - chr7_2:73167850-73167869 None:intergenic 30.0%
!! TTTGTTATTTGGGACAAAGT+TGG + chr7_2:73167990-73168009 Msa1075080:three_prime_UTR 30.0%
ATTAAGCATGAAGTTTCTCA+AGG - chr7_2:73168056-73168075 None:intergenic 30.0%
AACTGAGTGAACAGGAATTA+GGG - chr7_2:73166511-73166530 None:intergenic 35.0%
AAACTGAGTGAACAGGAATT+AGG - chr7_2:73166512-73166531 None:intergenic 35.0%
AGTATACAAACTGAGTGAAC+AGG - chr7_2:73166519-73166538 None:intergenic 35.0%
AATCTTATGGATCTGCTCTT+GGG - chr7_2:73166601-73166620 None:intergenic 35.0%
TAATCTTATGGATCTGCTCT+TGG - chr7_2:73166602-73166621 None:intergenic 35.0%
AAGAGCAGATCCATAAGATT+AGG + chr7_2:73166601-73166620 Msa1075080:CDS 35.0%
AAAGGGTGATCCTAATCTTA+TGG - chr7_2:73166614-73166633 None:intergenic 35.0%
CATGTCAAAAATCTCGAGAA+GGG + chr7_2:73166642-73166661 Msa1075080:CDS 35.0%
CAAGTGAAAGTTGAAATGTC+AGG - chr7_2:73166716-73166735 None:intergenic 35.0%
GATAAGCATCTTAGAGTGAA+GGG + chr7_2:73166781-73166800 Msa1075080:CDS 35.0%
GTGATATGAAGAACCTTAGT+AGG - chr7_2:73166820-73166839 None:intergenic 35.0%
AATGAAATACCTTCTCCACA+AGG - chr7_2:73166856-73166875 None:intergenic 35.0%
CTCCTAATATGGCTTACAAA+TGG + chr7_2:73167080-73167099 Msa1075080:intron 35.0%
ACCCATTTGTAAGCCATATT+AGG - chr7_2:73167085-73167104 None:intergenic 35.0%
AAATACGATATAGCCGTGTT+TGG + chr7_2:73167178-73167197 Msa1075080:intron 35.0%
TAGAGAGAACAAACCAAACA+CGG - chr7_2:73167194-73167213 None:intergenic 35.0%
!!! TTTTTGCAATTGGTTTGTGC+TGG + chr7_2:73167248-73167267 Msa1075080:intron 35.0%
!! AATTTTGAAGGACTCGACTA+TGG + chr7_2:73167462-73167481 Msa1075080:intron 35.0%
!! ATTTTGAAGGACTCGACTAT+GGG + chr7_2:73167463-73167482 Msa1075080:intron 35.0%
TCATATCATGTATTCAGCAG+AGG - chr7_2:73167637-73167656 None:intergenic 35.0%
ATCCTACACTTCAATGACAA+TGG - chr7_2:73167695-73167714 None:intergenic 35.0%
AATCTGTTTAACAACATCCG+GGG - chr7_2:73167848-73167867 None:intergenic 35.0%
AACTGAGTGAACAGGAATTA+GGG - chr7_2:73166511-73166530 None:intergenic 35.0%
AAACTGAGTGAACAGGAATT+AGG - chr7_2:73166512-73166531 None:intergenic 35.0%
AGTATACAAACTGAGTGAAC+AGG - chr7_2:73166519-73166538 None:intergenic 35.0%
AATCTTATGGATCTGCTCTT+GGG - chr7_2:73166601-73166620 None:intergenic 35.0%
TAATCTTATGGATCTGCTCT+TGG - chr7_2:73166602-73166621 None:intergenic 35.0%
AAGAGCAGATCCATAAGATT+AGG + chr7_2:73166601-73166620 Msa1075080:CDS 35.0%
AAAGGGTGATCCTAATCTTA+TGG - chr7_2:73166614-73166633 None:intergenic 35.0%
CATGTCAAAAATCTCGAGAA+GGG + chr7_2:73166642-73166661 Msa1075080:CDS 35.0%
CAAGTGAAAGTTGAAATGTC+AGG - chr7_2:73166716-73166735 None:intergenic 35.0%
GATAAGCATCTTAGAGTGAA+GGG + chr7_2:73166781-73166800 Msa1075080:CDS 35.0%
GTGATATGAAGAACCTTAGT+AGG - chr7_2:73166820-73166839 None:intergenic 35.0%
AATGAAATACCTTCTCCACA+AGG - chr7_2:73166856-73166875 None:intergenic 35.0%
CTCCTAATATGGCTTACAAA+TGG + chr7_2:73167080-73167099 Msa1075080:intron 35.0%
ACCCATTTGTAAGCCATATT+AGG - chr7_2:73167085-73167104 None:intergenic 35.0%
AAATACGATATAGCCGTGTT+TGG + chr7_2:73167178-73167197 Msa1075080:intron 35.0%
TAGAGAGAACAAACCAAACA+CGG - chr7_2:73167194-73167213 None:intergenic 35.0%
!!! TTTTTGCAATTGGTTTGTGC+TGG + chr7_2:73167248-73167267 Msa1075080:intron 35.0%
!! AATTTTGAAGGACTCGACTA+TGG + chr7_2:73167462-73167481 Msa1075080:intron 35.0%
!! ATTTTGAAGGACTCGACTAT+GGG + chr7_2:73167463-73167482 Msa1075080:intron 35.0%
TCATATCATGTATTCAGCAG+AGG - chr7_2:73167637-73167656 None:intergenic 35.0%
ATCCTACACTTCAATGACAA+TGG - chr7_2:73167695-73167714 None:intergenic 35.0%
AATCTGTTTAACAACATCCG+GGG - chr7_2:73167848-73167867 None:intergenic 35.0%
TCAAAGGAGACAGAAATCGA+AGG - chr7_2:73166472-73166491 None:intergenic 40.0%
TTTGACATGCTTGGAGGAAA+GGG - chr7_2:73166631-73166650 None:intergenic 40.0%
! TTTTGACATGCTTGGAGGAA+AGG - chr7_2:73166632-73166651 None:intergenic 40.0%
! GAGATTTTTGACATGCTTGG+AGG - chr7_2:73166637-73166656 None:intergenic 40.0%
! CTCGAGATTTTTGACATGCT+TGG - chr7_2:73166640-73166659 None:intergenic 40.0%
GCATGTCAAAAATCTCGAGA+AGG + chr7_2:73166641-73166660 Msa1075080:CDS 40.0%
GGATAAGCATCTTAGAGTGA+AGG + chr7_2:73166780-73166799 Msa1075080:CDS 40.0%
AGGTTCTTCATATCACTACC+AGG + chr7_2:73166824-73166843 Msa1075080:CDS 40.0%
TGAGAGGGAACTGTTGAAAT+AGG + chr7_2:73166956-73166975 Msa1075080:intron 40.0%
GCATCTAGATTTCCATAAGC+AGG - chr7_2:73167134-73167153 None:intergenic 40.0%
CGTATGCCAATTAAGGTTGT+AGG - chr7_2:73167316-73167335 None:intergenic 40.0%
TCTCACACGTATGCCAATTA+AGG - chr7_2:73167323-73167342 None:intergenic 40.0%
TACGTGTGAGAGTAAAAGGA+AGG + chr7_2:73167332-73167351 Msa1075080:intron 40.0%
!! CGACTATGGGTTGGAATTAA+TGG + chr7_2:73167476-73167495 Msa1075080:intron 40.0%
TGCGCATAGAAGAGAATCAA+CGG - chr7_2:73167541-73167560 None:intergenic 40.0%
TCATGTATTCAGCAGAGGTT+TGG - chr7_2:73167632-73167651 None:intergenic 40.0%
AGCCATTGTCATTGAAGTGT+AGG + chr7_2:73167690-73167709 Msa1075080:intron 40.0%
ATGACCTTACTTCTTGTTGC+AGG + chr7_2:73167760-73167779 Msa1075080:intron 40.0%
TCAAGATCAAGCATCTGCAA+TGG - chr7_2:73167911-73167930 None:intergenic 40.0%
!! GGCTTGTTTTCTTTAGCGTT+CGG + chr7_2:73168011-73168030 Msa1075080:three_prime_UTR 40.0%
! TTTTCTTTAGCGTTCGGTTC+TGG + chr7_2:73168017-73168036 Msa1075080:three_prime_UTR 40.0%
TCAAAGGAGACAGAAATCGA+AGG - chr7_2:73166472-73166491 None:intergenic 40.0%
TTTGACATGCTTGGAGGAAA+GGG - chr7_2:73166631-73166650 None:intergenic 40.0%
! TTTTGACATGCTTGGAGGAA+AGG - chr7_2:73166632-73166651 None:intergenic 40.0%
! GAGATTTTTGACATGCTTGG+AGG - chr7_2:73166637-73166656 None:intergenic 40.0%
! CTCGAGATTTTTGACATGCT+TGG - chr7_2:73166640-73166659 None:intergenic 40.0%
GCATGTCAAAAATCTCGAGA+AGG + chr7_2:73166641-73166660 Msa1075080:CDS 40.0%
GGATAAGCATCTTAGAGTGA+AGG + chr7_2:73166780-73166799 Msa1075080:CDS 40.0%
AGGTTCTTCATATCACTACC+AGG + chr7_2:73166824-73166843 Msa1075080:CDS 40.0%
TGAGAGGGAACTGTTGAAAT+AGG + chr7_2:73166956-73166975 Msa1075080:intron 40.0%
GCATCTAGATTTCCATAAGC+AGG - chr7_2:73167134-73167153 None:intergenic 40.0%
CGTATGCCAATTAAGGTTGT+AGG - chr7_2:73167316-73167335 None:intergenic 40.0%
TCTCACACGTATGCCAATTA+AGG - chr7_2:73167323-73167342 None:intergenic 40.0%
TACGTGTGAGAGTAAAAGGA+AGG + chr7_2:73167332-73167351 Msa1075080:intron 40.0%
!! CGACTATGGGTTGGAATTAA+TGG + chr7_2:73167476-73167495 Msa1075080:intron 40.0%
TGCGCATAGAAGAGAATCAA+CGG - chr7_2:73167541-73167560 None:intergenic 40.0%
TCATGTATTCAGCAGAGGTT+TGG - chr7_2:73167632-73167651 None:intergenic 40.0%
AGCCATTGTCATTGAAGTGT+AGG + chr7_2:73167690-73167709 Msa1075080:intron 40.0%
ATGACCTTACTTCTTGTTGC+AGG + chr7_2:73167760-73167779 Msa1075080:intron 40.0%
TCAAGATCAAGCATCTGCAA+TGG - chr7_2:73167911-73167930 None:intergenic 40.0%
!! GGCTTGTTTTCTTTAGCGTT+CGG + chr7_2:73168011-73168030 Msa1075080:three_prime_UTR 40.0%
! TTTTCTTTAGCGTTCGGTTC+TGG + chr7_2:73168017-73168036 Msa1075080:three_prime_UTR 40.0%
AGGAGACAGAAATCGAAGGA+AGG - chr7_2:73166468-73166487 None:intergenic 45.0%
CTCCTTTGATTCACTAGCTG+CGG + chr7_2:73166483-73166502 Msa1075080:five_prime_UTR 45.0%
!! GTTTGTGCTGATTTGGTTCG+TGG + chr7_2:73166751-73166770 Msa1075080:intron 45.0%
TTAGAGTGAAGGGTCCTGTT+AGG + chr7_2:73166791-73166810 Msa1075080:CDS 45.0%
TCCTGTTAGGATGCCTACTA+AGG + chr7_2:73166804-73166823 Msa1075080:CDS 45.0%
ACCTTAGTAGGCATCCTAAC+AGG - chr7_2:73166808-73166827 None:intergenic 45.0%
!! CCATAAGCAGGCTAGTTTCA+GGG - chr7_2:73167122-73167141 None:intergenic 45.0%
!! TCCATAAGCAGGCTAGTTTC+AGG - chr7_2:73167123-73167142 None:intergenic 45.0%
GGCATACGTGTGAGAGTAAA+AGG + chr7_2:73167328-73167347 Msa1075080:intron 45.0%
TGATTCTCTTCTATGCGCAC+TGG + chr7_2:73167542-73167561 Msa1075080:intron 45.0%
GGTACCTGCAACAAGAAGTA+AGG - chr7_2:73167767-73167786 None:intergenic 45.0%
CTCAAATCTATCCCAGGTGT+TGG - chr7_2:73167788-73167807 None:intergenic 45.0%
CGATAACTCTCTTGTGCACA+CGG - chr7_2:73167813-73167832 None:intergenic 45.0%
ACCTCTATCACCATTGAACC+TGG + chr7_2:73167868-73167887 Msa1075080:CDS 45.0%
ACCAGGTTCAATGGTGATAG+AGG - chr7_2:73167872-73167891 None:intergenic 45.0%
AGGAGACAGAAATCGAAGGA+AGG - chr7_2:73166468-73166487 None:intergenic 45.0%
CTCCTTTGATTCACTAGCTG+CGG + chr7_2:73166483-73166502 Msa1075080:five_prime_UTR 45.0%
!! GTTTGTGCTGATTTGGTTCG+TGG + chr7_2:73166751-73166770 Msa1075080:intron 45.0%
TTAGAGTGAAGGGTCCTGTT+AGG + chr7_2:73166791-73166810 Msa1075080:CDS 45.0%
TCCTGTTAGGATGCCTACTA+AGG + chr7_2:73166804-73166823 Msa1075080:CDS 45.0%
ACCTTAGTAGGCATCCTAAC+AGG - chr7_2:73166808-73166827 None:intergenic 45.0%
!! CCATAAGCAGGCTAGTTTCA+GGG - chr7_2:73167122-73167141 None:intergenic 45.0%
!! TCCATAAGCAGGCTAGTTTC+AGG - chr7_2:73167123-73167142 None:intergenic 45.0%
GGCATACGTGTGAGAGTAAA+AGG + chr7_2:73167328-73167347 Msa1075080:intron 45.0%
TGATTCTCTTCTATGCGCAC+TGG + chr7_2:73167542-73167561 Msa1075080:intron 45.0%
GGTACCTGCAACAAGAAGTA+AGG - chr7_2:73167767-73167786 None:intergenic 45.0%
CTCAAATCTATCCCAGGTGT+TGG - chr7_2:73167788-73167807 None:intergenic 45.0%
CGATAACTCTCTTGTGCACA+CGG - chr7_2:73167813-73167832 None:intergenic 45.0%
ACCTCTATCACCATTGAACC+TGG + chr7_2:73167868-73167887 Msa1075080:CDS 45.0%
ACCAGGTTCAATGGTGATAG+AGG - chr7_2:73167872-73167891 None:intergenic 45.0%
TCTTGGGATTCCTCCAAACC+GGG - chr7_2:73166585-73166604 None:intergenic 50.0%
CTCTTGGGATTCCTCCAAAC+CGG - chr7_2:73166586-73166605 None:intergenic 50.0%
!! TGATTTGGTTCGTGGCGCTA+AGG + chr7_2:73166759-73166778 Msa1075080:CDS 50.0%
ACTACCAGGAAGACTCCTTG+TGG + chr7_2:73166838-73166857 Msa1075080:CDS 50.0%
TTCTCCACAAGGAGTCTTCC+TGG - chr7_2:73166845-73166864 None:intergenic 50.0%
AGGAAGACTCCTTGTGGAGA+AGG + chr7_2:73166844-73166863 Msa1075080:CDS 50.0%
! CCCTGAAACTAGCCTGCTTA+TGG + chr7_2:73167119-73167138 Msa1075080:intron 50.0%
TGAAGGACTCGACTATGGGT+TGG + chr7_2:73167467-73167486 Msa1075080:intron 50.0%
!! TTCTATGCGCACTGGTTGCA+AGG + chr7_2:73167550-73167569 Msa1075080:intron 50.0%
TTGTTGCAGGTACCAACACC+TGG + chr7_2:73167773-73167792 Msa1075080:intron 50.0%
TGTTGCAGGTACCAACACCT+GGG + chr7_2:73167774-73167793 Msa1075080:intron 50.0%
ACGGAGCTCAAATCTATCCC+AGG - chr7_2:73167794-73167813 None:intergenic 50.0%
TATCGACCTCTACAGTTCCC+CGG + chr7_2:73167828-73167847 Msa1075080:CDS 50.0%
AACCTCGACACCAGGTTCAA+TGG - chr7_2:73167881-73167900 None:intergenic 50.0%
TCTTGGGATTCCTCCAAACC+GGG - chr7_2:73166585-73166604 None:intergenic 50.0%
CTCTTGGGATTCCTCCAAAC+CGG - chr7_2:73166586-73166605 None:intergenic 50.0%
!! TGATTTGGTTCGTGGCGCTA+AGG + chr7_2:73166759-73166778 Msa1075080:CDS 50.0%
ACTACCAGGAAGACTCCTTG+TGG + chr7_2:73166838-73166857 Msa1075080:CDS 50.0%
TTCTCCACAAGGAGTCTTCC+TGG - chr7_2:73166845-73166864 None:intergenic 50.0%
AGGAAGACTCCTTGTGGAGA+AGG + chr7_2:73166844-73166863 Msa1075080:CDS 50.0%
! CCCTGAAACTAGCCTGCTTA+TGG + chr7_2:73167119-73167138 Msa1075080:intron 50.0%
TGAAGGACTCGACTATGGGT+TGG + chr7_2:73167467-73167486 Msa1075080:intron 50.0%
!! TTCTATGCGCACTGGTTGCA+AGG + chr7_2:73167550-73167569 Msa1075080:intron 50.0%
TTGTTGCAGGTACCAACACC+TGG + chr7_2:73167773-73167792 Msa1075080:intron 50.0%
TGTTGCAGGTACCAACACCT+GGG + chr7_2:73167774-73167793 Msa1075080:intron 50.0%
ACGGAGCTCAAATCTATCCC+AGG - chr7_2:73167794-73167813 None:intergenic 50.0%
TATCGACCTCTACAGTTCCC+CGG + chr7_2:73167828-73167847 Msa1075080:CDS 50.0%
AACCTCGACACCAGGTTCAA+TGG - chr7_2:73167881-73167900 None:intergenic 50.0%
CGCCGCAGCTAGTGAATCAA+AGG - chr7_2:73166488-73166507 None:intergenic 55.0%
CAACATCCGGGGAACTGTAG+AGG - chr7_2:73167837-73167856 None:intergenic 55.0%
! CACCATTGAACCTGGTGTCG+AGG + chr7_2:73167876-73167895 Msa1075080:CDS 55.0%
! TGAACCTGGTGTCGAGGTTG+AGG + chr7_2:73167882-73167901 Msa1075080:CDS 55.0%
GTAACCTCAACCTCGACACC+AGG - chr7_2:73167889-73167908 None:intergenic 55.0%
CGCCGCAGCTAGTGAATCAA+AGG - chr7_2:73166488-73166507 None:intergenic 55.0%
CAACATCCGGGGAACTGTAG+AGG - chr7_2:73167837-73167856 None:intergenic 55.0%
! CACCATTGAACCTGGTGTCG+AGG + chr7_2:73167876-73167895 Msa1075080:CDS 55.0%
! TGAACCTGGTGTCGAGGTTG+AGG + chr7_2:73167882-73167901 Msa1075080:CDS 55.0%
GTAACCTCAACCTCGACACC+AGG - chr7_2:73167889-73167908 None:intergenic 55.0%
GCGATGAAACCCACCAAGCC+CGG + chr7_2:73166564-73166583 Msa1075080:CDS 60.0%
GAAACCCACCAAGCCCGGTT+TGG + chr7_2:73166569-73166588 Msa1075080:CDS 60.0%
! TCCTCCAAACCGGGCTTGGT+GGG - chr7_2:73166576-73166595 None:intergenic 60.0%
TTCCTCCAAACCGGGCTTGG+TGG - chr7_2:73166577-73166596 None:intergenic 60.0%
GGATTCCTCCAAACCGGGCT+TGG - chr7_2:73166580-73166599 None:intergenic 60.0%
GCGATGAAACCCACCAAGCC+CGG + chr7_2:73166564-73166583 Msa1075080:CDS 60.0%
GAAACCCACCAAGCCCGGTT+TGG + chr7_2:73166569-73166588 Msa1075080:CDS 60.0%
! TCCTCCAAACCGGGCTTGGT+GGG - chr7_2:73166576-73166595 None:intergenic 60.0%
TTCCTCCAAACCGGGCTTGG+TGG - chr7_2:73166577-73166596 None:intergenic 60.0%
GGATTCCTCCAAACCGGGCT+TGG - chr7_2:73166580-73166599 None:intergenic 60.0%
!! ACCCACCAAGCCCGGTTTGG+AGG + chr7_2:73166572-73166591 Msa1075080:CDS 65.0%
!! ACCCACCAAGCCCGGTTTGG+AGG + chr7_2:73166572-73166591 Msa1075080:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 73166456 73168143 73166456 ID=Msa1075080;Name=Msa1075080
chr7_2 mRNA 73166456 73168143 73166456 ID=Msa1075080-mRNA-1;Parent=Msa1075080;Name=Msa1075080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=96|1|1|1|1|1|3|219|122
chr7_2 exon 73166456 73166663 73166456 ID=Msa1075080-mRNA-1:exon:16933;Parent=Msa1075080-mRNA-1
chr7_2 exon 73166752 73166865 73166752 ID=Msa1075080-mRNA-1:exon:16934;Parent=Msa1075080-mRNA-1
chr7_2 exon 73167782 73168143 73167782 ID=Msa1075080-mRNA-1:exon:16935;Parent=Msa1075080-mRNA-1
chr7_2 five_prime_UTR 73166456 73166551 73166456 ID=Msa1075080-mRNA-1:five_prime_utr;Parent=Msa1075080-mRNA-1
chr7_2 CDS 73166552 73166663 73166552 ID=Msa1075080-mRNA-1:cds;Parent=Msa1075080-mRNA-1
chr7_2 CDS 73166752 73166865 73166752 ID=Msa1075080-mRNA-1:cds;Parent=Msa1075080-mRNA-1
chr7_2 CDS 73167782 73167924 73167782 ID=Msa1075080-mRNA-1:cds;Parent=Msa1075080-mRNA-1
chr7_2 three_prime_UTR 73167925 73168143 73167925 ID=Msa1075080-mRNA-1:three_prime_utr;Parent=Msa1075080-mRNA-1
Gene Sequence

>Msa1075080

ATGGCGTACGCTGCGATGAAACCCACCAAGCCCGGTTTGGAGGAATCCCAAGAGCAGATCCATAAGATTAGGATCACCCTTTCCTCCAAGCATGTCAAAAATCTCGAGAAGGTTTGTGCTGATTTGGTTCGTGGCGCTAAGGATAAGCATCTTAGAGTGAAGGGTCCTGTTAGGATGCCTACTAAGGTTCTTCATATCACTACCAGGAAGACTCCTTGTGGAGAAGGTACCAACACCTGGGATAGATTTGAGCTCCGTGTGCACAAGAGAGTTATCGACCTCTACAGTTCCCCGGATGTTGTTAAACAGATTACCTCTATCACCATTGAACCTGGTGTCGAGGTTGAGGTTACCATTGCAGATGCTTGA

Protein sequence

>Msa1075080

MAYAAMKPTKPGLEESQEQIHKIRITLSSKHVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVLHITTRKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA*