AlfalfaGEDB | Msa1075080

M. sativa cultivar zhongmu-4 / Msa1075080

KEGG: K02969|K08679
GO: GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00338.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1075080	XP_003625216.1	100.000	122	0	0	1	122	1	122	9.54e-84	250

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1075080	sp\|Q9STY6\|RS202_ARATH	89.344	122	13	0	1	122	1	122	2.29e-75	222

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1075080	A2Q4V6	100.000	122	0	0	1	122	1	122	4.56e-84	250

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa1075080	0.825898	3.646994e-54	-8.615850e-47
Msa0004790	Msa1075080	0.821893	3.169630e-53	-8.615850e-47
Msa0008050	Msa1075080	-0.814243	1.700971e-51	-8.615850e-47
Msa0011160	Msa1075080	-0.828219	1.015344e-54	-8.615850e-47
Msa0012060	Msa1075080	-0.801033	1.089517e-48	-8.615850e-47
Msa0015100	Msa1075080	-0.806327	8.682742e-50	-8.615850e-47
Msa0015390	Msa1075080	-0.800142	1.655816e-48	-8.615850e-47
Msa0023840	Msa1075080	0.802867	4.575986e-49	-8.615850e-47
Msa0024210	Msa1075080	0.801289	9.658502e-49	-8.615850e-47
Msa0029850	Msa1075080	-0.870836	1.079453e-66	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1075080	MtrunA17_Chr7g0258291	100.000	122	0	1	122	1	122	8.78e-88	250
Msa1075080	MtrunA17_Chr4g0018141	98.361	122	2	1	122	1	122	5.61e-87	248
Msa1075080	MtrunA17_Chr2g0317541	97.500	120	3	3	122	4	123	7.78e-84	240
Msa1075080	MtrunA17_Chr1g0197931	97.500	120	3	3	122	4	123	7.78e-84	240

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1075080	AT3G47370.3	89.344	122	13	1	122	1	122	2.33e-76	222
Msa1075080	AT3G47370.2	89.344	122	13	1	122	1	122	2.33e-76	222
Msa1075080	AT3G47370.1	89.344	122	13	1	122	1	122	2.33e-76	222
Msa1075080	AT5G62300.1	89.256	121	13	2	122	4	124	2.00e-75	219
Msa1075080	AT5G62300.2	89.256	121	13	2	122	4	124	2.00e-75	219
Msa1075080	AT3G45030.1	89.256	121	13	2	122	4	124	2.00e-75	219

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Find 54 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGAGTGAACAGGAATT+AGG	0.254898	7_2:-73166509	None:intergenic
AAAGGGTGATCCTAATCTTA+TGG	0.356442	7_2:-73166611	None:intergenic
AACCTCGACACCAGGTTCAA+TGG	0.477591	7_2:-73167878	None:intergenic
AACTGAGTGAACAGGAATTA+GGG	0.381983	7_2:-73166508	None:intergenic
AAGAGCAGATCCATAAGATT+AGG	0.460004	7_2:+73166601	Msa1075080:CDS
AATCTGTTTAACAACATCCG+GGG	0.718061	7_2:-73167845	None:intergenic
AATCTTATGGATCTGCTCTT+GGG	0.403761	7_2:-73166598	None:intergenic
AATGAAATACCTTCTCCACA+AGG	0.646547	7_2:-73166853	None:intergenic
ACCAGGTTCAATGGTGATAG+AGG	0.475816	7_2:-73167869	None:intergenic
ACCCACCAAGCCCGGTTTGG+AGG	0.507965	7_2:+73166572	Msa1075080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTGAAAGTTGAAATGTCA+GGG	-	chr7_2:73166715-73166734	None:intergenic	30.0%
ATTTGATGAAAGGTAGTCAA+TGG	+	chr7_2:73166912-73166931	Msa1075080:intron	30.0%
AGATTAGAAACATCATTGAG+AGG	+	chr7_2:73166940-73166959	Msa1075080:intron	30.0%
GATTAGAAACATCATTGAGA+GGG	+	chr7_2:73166941-73166960	Msa1075080:intron	30.0%
TCCTAATATGGCTTACAAAT+GGG	+	chr7_2:73167081-73167100	Msa1075080:intron	30.0%
TAATCTGTTTAACAACATCC+GGG	-	chr7_2:73167849-73167868	None:intergenic	30.0%
GTAATCTGTTTAACAACATC+CGG	-	chr7_2:73167850-73167869	None:intergenic	30.0%
ATTAAGCATGAAGTTTCTCA+AGG	-	chr7_2:73168056-73168075	None:intergenic	30.0%
AAGTGAAAGTTGAAATGTCA+GGG	-	chr7_2:73166715-73166734	None:intergenic	30.0%
ATTTGATGAAAGGTAGTCAA+TGG	+	chr7_2:73166912-73166931	Msa1075080:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	73166456	73168143	73166456	ID=Msa1075080;Name=Msa1075080
chr7_2	mRNA	73166456	73168143	73166456	ID=Msa1075080-mRNA-1;Parent=Msa1075080;Name=Msa1075080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=96\|1\|1\|1\|1\|1\|3\|219\|122
chr7_2	exon	73166456	73166663	73166456	ID=Msa1075080-mRNA-1:exon:16933;Parent=Msa1075080-mRNA-1
chr7_2	exon	73166752	73166865	73166752	ID=Msa1075080-mRNA-1:exon:16934;Parent=Msa1075080-mRNA-1
chr7_2	exon	73167782	73168143	73167782	ID=Msa1075080-mRNA-1:exon:16935;Parent=Msa1075080-mRNA-1
chr7_2	five_prime_UTR	73166456	73166551	73166456	ID=Msa1075080-mRNA-1:five_prime_utr;Parent=Msa1075080-mRNA-1
chr7_2	CDS	73166552	73166663	73166552	ID=Msa1075080-mRNA-1:cds;Parent=Msa1075080-mRNA-1
chr7_2	CDS	73166752	73166865	73166752	ID=Msa1075080-mRNA-1:cds;Parent=Msa1075080-mRNA-1
chr7_2	CDS	73167782	73167924	73167782	ID=Msa1075080-mRNA-1:cds;Parent=Msa1075080-mRNA-1
chr7_2	three_prime_UTR	73167925	73168143	73167925	ID=Msa1075080-mRNA-1:three_prime_utr;Parent=Msa1075080-mRNA-1

Gene Sequence	>Msa1075080 ATGGCGTACGCTGCGATGAAACCCACCAAGCCCGGTTTGGAGGAATCCCAAGAGCAGATCCATAAGATTAGGATCACCCTTTCCTCCAAGCATGTCAAAAATCTCGAGAAGGTTTGTGCTGATTTGGTTCGTGGCGCTAAGGATAAGCATCTTAGAGTGAAGGGTCCTGTTAGGATGCCTACTAAGGTTCTTCATATCACTACCAGGAAGACTCCTTGTGGAGAAGGTACCAACACCTGGGATAGATTTGAGCTCCGTGTGCACAAGAGAGTTATCGACCTCTACAGTTCCCCGGATGTTGTTAAACAGATTACCTCTATCACCATTGAACCTGGTGTCGAGGTTGAGGTTACCATTGCAGATGCTTGA
Protein sequence	>Msa1075080 MAYAAMKPTKPGLEESQEQIHKIRITLSSKHVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVLHITTRKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA*