Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1327770 | sp|O80763|NRX1_ARATH | 62.456 | 570 | 208 | 3 | 6 | 570 | 10 | 578 | 0.0 | 749 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1327770 | A0A072U2K5 | 94.035 | 570 | 34 | 0 | 1 | 570 | 1 | 570 | 0.0 | 1106 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0011240 | Msa1327770 | 0.814441 | 1.538185e-51 | -8.615850e-47 |
Msa0607540 | Msa1327770 | 0.807540 | 4.808593e-50 | -8.615850e-47 |
Msa0647830 | Msa1327770 | 0.830768 | 2.437649e-55 | -8.615850e-47 |
Msa0690440 | Msa1327770 | 0.807533 | 4.826026e-50 | -8.615850e-47 |
Msa0806090 | Msa1327770 | 0.815735 | 7.937109e-52 | -8.615850e-47 |
Msa0153900 | Msa1327770 | 0.805384 | 1.370144e-49 | -8.615850e-47 |
Msa1249940 | Msa1327770 | 0.858865 | 6.142355e-63 | -8.615850e-47 |
Msa1310210 | Msa1327770 | 0.822267 | 2.595025e-53 | -8.615850e-47 |
Msa1327770 | Msa1351620 | 0.806417 | 8.309811e-50 | -8.615850e-47 |
Msa1327770 | Msa1393410 | 0.812244 | 4.673949e-51 | -8.615850e-47 |
Msa1327770 | Msa1435420 | 0.812785 | 3.559453e-51 | -8.615850e-47 |
Msa1327770 | Msa1444060 | -0.810721 | 1.001118e-50 | -8.615850e-47 |
Msa1327770 | Msa1451620 | -0.811699 | 6.142827e-51 | -8.615850e-47 |
Msa1327770 | Msa1460410 | 0.809124 | 2.209843e-50 | -8.615850e-47 |
Msa0443290 | Msa1327770 | 0.801590 | 8.382381e-49 | -8.615850e-47 |
Msa1054410 | Msa1327770 | 0.803826 | 2.895673e-49 | -8.615850e-47 |
Msa1074060 | Msa1327770 | 0.803363 | 3.612898e-49 | -8.615850e-47 |
Msa1075080 | Msa1327770 | -0.809376 | 1.951459e-50 | -8.615850e-47 |
Msa1075220 | Msa1327770 | -0.803166 | 3.969130e-49 | -8.615850e-47 |
Msa0354800 | Msa1327770 | -0.813280 | 2.772722e-51 | -8.615850e-47 |
Msa1197020 | Msa1327770 | 0.906493 | 1.399621e-80 | -8.615850e-47 |
Msa0536220 | Msa1327770 | 0.801989 | 6.940889e-49 | -8.615850e-47 |
Msa0540070 | Msa1327770 | 0.801746 | 7.786266e-49 | -8.615850e-47 |
Msa0548280 | Msa1327770 | -0.800877 | 1.172507e-48 | -8.615850e-47 |
Msa0553460 | Msa1327770 | 0.819311 | 1.241194e-52 | -8.615850e-47 |
Msa0564510 | Msa1327770 | 0.837745 | 4.335231e-57 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1327770 | MtrunA17_Chr8g0365761 | 94.035 | 570 | 34 | 0 | 1 | 570 | 1 | 570 | 0.0 | 1106 |
Msa1327770 | MtrunA17_Chr8g0365791 | 86.570 | 484 | 65 | 0 | 1 | 484 | 1 | 484 | 0.0 | 868 |
Msa1327770 | MtrunA17_Chr8g0365791 | 35.629 | 334 | 212 | 3 | 9 | 340 | 169 | 501 | 8.16e-62 | 212 |
Msa1327770 | MtrunA17_Chr8g0365791 | 34.254 | 181 | 116 | 2 | 328 | 507 | 8 | 186 | 1.87e-33 | 134 |
Msa1327770 | MtrunA17_Chr3g0139141 | 39.178 | 365 | 221 | 1 | 175 | 539 | 19 | 382 | 1.11e-96 | 300 |
Msa1327770 | MtrunA17_Chr3g0139141 | 34.650 | 329 | 210 | 5 | 9 | 335 | 13 | 338 | 2.46e-61 | 207 |
Msa1327770 | MtrunA17_Chr3g0143311 | 41.026 | 390 | 212 | 6 | 175 | 546 | 40 | 429 | 4.34e-95 | 297 |
Msa1327770 | MtrunA17_Chr3g0143311 | 42.405 | 316 | 167 | 4 | 15 | 315 | 40 | 355 | 1.48e-80 | 259 |
Msa1327770 | MtrunA17_Chr3g0143311 | 45.161 | 155 | 72 | 4 | 14 | 156 | 203 | 356 | 2.57e-34 | 135 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1327770 | AT1G60420.1 | 62.456 | 570 | 208 | 3 | 6 | 570 | 10 | 578 | 0.0 | 749 |
Msa1327770 | AT4G31240.1 | 38.753 | 369 | 225 | 1 | 172 | 540 | 17 | 384 | 6.52e-94 | 293 |
Msa1327770 | AT4G31240.1 | 34.177 | 316 | 204 | 4 | 11 | 324 | 16 | 329 | 3.99e-62 | 210 |
Msa1327770 | AT4G31240.2 | 38.753 | 369 | 225 | 1 | 172 | 540 | 17 | 384 | 6.52e-94 | 293 |
Msa1327770 | AT4G31240.2 | 34.177 | 316 | 204 | 4 | 11 | 324 | 16 | 329 | 3.99e-62 | 210 |
Find 161 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGAGGTCTGGTTGGGCTTTA+TGG | 0.070923 | 8_4:+45208521 | Msa1327770:CDS |
CCTTTGCAATGTCATCCTTT+TGG | 0.167653 | 8_4:-45208592 | None:intergenic |
CTCCCTACCTTGGTTGTTAT+TGG | 0.188184 | 8_4:+45207850 | Msa1327770:CDS |
TATGAAATAATTTGAATCTT+TGG | 0.191450 | 8_4:+45208939 | Msa1327770:three_prime_UTR |
GTTCACATTATCCGTGTTTA+TGG | 0.195004 | 8_4:+45207319 | Msa1327770:CDS |
TGACTCTTCTTCATTATCTA+AGG | 0.210482 | 8_4:-45207734 | None:intergenic |
TCCCGCAAAGAATTCATTAA+AGG | 0.224770 | 8_4:-45208372 | None:intergenic |
AGATATAACAAGCAGATTTC+AGG | 0.242247 | 8_4:-45208855 | None:intergenic |
ATCACAAACCCATCCATCTT+TGG | 0.250320 | 8_4:-45208813 | None:intergenic |
GAGGTCTGGTTGGGCTTTAT+GGG | 0.250764 | 8_4:+45208522 | Msa1327770:CDS |
ATCCCCAAGCTCGTGGCAAT+TGG | 0.257472 | 8_4:+45208467 | Msa1327770:CDS |
TGTTATATCTTAGTGATTAC+TGG | 0.272154 | 8_4:+45208868 | Msa1327770:three_prime_UTR |
GGCCCAATTGCCACGAGCTT+GGG | 0.272891 | 8_4:-45208470 | None:intergenic |
CGTGTCTCTGAATCAGAAAA+TGG | 0.283652 | 8_4:-45207208 | None:intergenic |
AAAAGCCTCATCATCTTTAT+CGG | 0.320709 | 8_4:-45207149 | None:intergenic |
ACAGAATCCGCCATTGTTCC+TGG | 0.331487 | 8_4:-45205727 | None:intergenic |
AACAAGGACGTCTTATTTAT+AGG | 0.337922 | 8_4:-45205657 | None:intergenic |
TTGTCTCCCAGCGCACAATT+TGG | 0.341919 | 8_4:-45208755 | None:intergenic |
TCTATTTAATCAAAAGCTTA+AGG | 0.343684 | 8_4:+45207657 | Msa1327770:CDS |
TGGTATGCCTCAATGAGTTT+TGG | 0.350245 | 8_4:-45208281 | None:intergenic |
TTTGGGCTTCTCTTCTTCCT+TGG | 0.354126 | 8_4:-45208795 | None:intergenic |
TCAAACACTTGAGTCAGTTT+TGG | 0.355313 | 8_4:+45207999 | Msa1327770:CDS |
AACAAGCAGATTTCAGGCTT+TGG | 0.367079 | 8_4:-45208849 | None:intergenic |
GGAGACAAAGGAAGCATAAA+TGG | 0.378642 | 8_4:+45208770 | Msa1327770:CDS |
TGGCCCAATTGCCACGAGCT+TGG | 0.380921 | 8_4:-45208471 | None:intergenic |
AGTCGCAAATTCAAGGTATC+TGG | 0.382318 | 8_4:+45208443 | Msa1327770:CDS |
CCATGGCTGGCACTTCCCTT+TGG | 0.383022 | 8_4:+45208398 | Msa1327770:CDS |
GGTTCCGGTGTCAGAGTTAG+AGG | 0.386836 | 8_4:+45208199 | Msa1327770:intron |
CTCTCCAAACGGTGACTTTG+AGG | 0.395188 | 8_4:+45207111 | Msa1327770:CDS |
TGAGGCATACCATAAGATTA+AGG | 0.395339 | 8_4:+45208292 | Msa1327770:CDS |
TCCTTTAATGAATTCTTTGC+GGG | 0.398362 | 8_4:+45208371 | Msa1327770:CDS |
TCACAAACCCATCCATCTTT+GGG | 0.399851 | 8_4:-45208812 | None:intergenic |
GTGAGGATGAGGGAGATAAT+TGG | 0.409851 | 8_4:+45208696 | Msa1327770:CDS |
GATGAACTGTTTCATGTAAA+CGG | 0.411174 | 8_4:+45207241 | Msa1327770:CDS |
CTTGCATTGCTTGATGAAGC+TGG | 0.412538 | 8_4:+45207274 | Msa1327770:CDS |
TCAATGGCCTCAGCGGCATT+AGG | 0.415477 | 8_4:-45207895 | None:intergenic |
TCTTCGCAACACCGGCGATC+AGG | 0.422776 | 8_4:+45205807 | Msa1327770:CDS |
GTTTCATGCGTCACCTTCTC+AGG | 0.435152 | 8_4:-45208620 | None:intergenic |
GGAAAAGTTATTACTGAAGA+TGG | 0.435795 | 8_4:+45207295 | Msa1327770:CDS |
ATCCTTTAATGAATTCTTTG+CGG | 0.438767 | 8_4:+45208370 | Msa1327770:CDS |
GCTGAGGCCATTGAGGATCA+TGG | 0.439830 | 8_4:+45207904 | Msa1327770:CDS |
GAGCTTCTTTCGTGACAGTC+TGG | 0.442158 | 8_4:-45208499 | None:intergenic |
AATCTTGTGCACGAGTCATC+AGG | 0.445057 | 8_4:+45209000 | Msa1327770:three_prime_UTR |
CGAAGAAGAAAGTCTCTATC+AGG | 0.446671 | 8_4:-45205790 | None:intergenic |
CCAGTCCTTGAGATCGGTAT+TGG | 0.447975 | 8_4:+45207414 | Msa1327770:CDS |
CGCAATGTTTATTGCTGTGA+TGG | 0.449040 | 8_4:+45208671 | Msa1327770:CDS |
TCCCCAAGCTCGTGGCAATT+GGG | 0.449928 | 8_4:+45208468 | Msa1327770:CDS |
AGCTTGAAGGGAAAGAAACT+TGG | 0.454943 | 8_4:+45207013 | Msa1327770:CDS |
TCCTCTACTTCTCAGCCCAC+TGG | 0.456326 | 8_4:+45208234 | Msa1327770:CDS |
TTCGTGACAGTCTGGCCACT+TGG | 0.457604 | 8_4:-45208491 | None:intergenic |
CTGAGGCCATTGAGGATCAT+GGG | 0.457780 | 8_4:+45207905 | Msa1327770:CDS |
CTGTGATGGTTGTGAGGATG+AGG | 0.458196 | 8_4:+45208685 | Msa1327770:CDS |
TTTCCCTCAAGCTCAGAGAT+AGG | 0.462545 | 8_4:-45207589 | None:intergenic |
CACGAAAGAAGCTCGAGGTC+TGG | 0.464365 | 8_4:+45208508 | Msa1327770:CDS |
TTGGTTGTTATTGGAACAGA+TGG | 0.466603 | 8_4:+45207859 | Msa1327770:CDS |
CTCCATCCAAATTGTGCGCT+GGG | 0.466966 | 8_4:+45208749 | Msa1327770:CDS |
TTGGTTATCCTTGCCTCTCA+AGG | 0.468978 | 8_4:+45207783 | Msa1327770:CDS |
GCTATCAGTTCTCCCTACCT+TGG | 0.470710 | 8_4:+45207840 | Msa1327770:CDS |
CTTTGCGGGAATGCCATGGC+TGG | 0.471268 | 8_4:+45208385 | Msa1327770:CDS |
GTTAAAATTGATAGCTTGAA+GGG | 0.473772 | 8_4:+45207001 | Msa1327770:CDS |
AAGAAGCTCGAGGTCTGGTT+GGG | 0.474272 | 8_4:+45208513 | Msa1327770:CDS |
ATTCTTGAGTCGCAAATTCA+AGG | 0.476921 | 8_4:+45208436 | Msa1327770:CDS |
TTGGAAGAAAAGCACGGCAT+GGG | 0.477928 | 8_4:-45208262 | None:intergenic |
AAGTGTTTGAGATGCCTCCT+TGG | 0.478467 | 8_4:-45207986 | None:intergenic |
ACAACCTCAAAGTCACCGTT+TGG | 0.479366 | 8_4:-45207115 | None:intergenic |
AAAAGAAATAGAGGCCCAAA+AGG | 0.482783 | 8_4:+45208577 | Msa1327770:CDS |
TTTATTCTCTCTTCAGTGAA+AGG | 0.486902 | 8_4:-45208557 | None:intergenic |
AGAGAGAATAAAAGAAATAG+AGG | 0.489082 | 8_4:+45208568 | Msa1327770:CDS |
GAGCTTGAGGGAAAGACAGT+TGG | 0.489851 | 8_4:+45207598 | Msa1327770:CDS |
GGTTAAAATTGATAGCTTGA+AGG | 0.491854 | 8_4:+45207000 | Msa1327770:intron |
TGAACCCTTTCTGATGTGAA+AGG | 0.494644 | 8_4:-45207355 | None:intergenic |
CTAGCTTACTTCATTTCCAT+CGG | 0.501319 | 8_4:-45207467 | None:intergenic |
AAAGAAGCTCGAGGTCTGGT+TGG | 0.502824 | 8_4:+45208512 | Msa1327770:CDS |
GACTTTCTTCTTCGCAACAC+CGG | 0.503020 | 8_4:+45205799 | Msa1327770:CDS |
GATAGCCAGCCATGGCATCT+TGG | 0.503945 | 8_4:-45207185 | None:intergenic |
GAACCCTTTCTGATGTGAAA+GGG | 0.508847 | 8_4:-45207354 | None:intergenic |
CTCCCAGCGCACAATTTGGA+TGG | 0.511436 | 8_4:-45208751 | None:intergenic |
AAACAATGACGCACTTGAAG+TGG | 0.514226 | 8_4:+45208319 | Msa1327770:CDS |
ATACCTATCTCTGAGCTTGA+GGG | 0.516850 | 8_4:+45207586 | Msa1327770:CDS |
TCTTTAGTCACTCACTCTCC+AGG | 0.517949 | 8_4:+45205709 | Msa1327770:five_prime_UTR |
CAAAAGGATGACATTGCAAA+GGG | 0.524480 | 8_4:+45208593 | Msa1327770:CDS |
GATACCTATCTCTGAGCTTG+AGG | 0.524940 | 8_4:+45207585 | Msa1327770:intron |
TCTCCATCCAAATTGTGCGC+TGG | 0.526783 | 8_4:+45208748 | Msa1327770:CDS |
GATACCCTTTCACATCAGAA+AGG | 0.527989 | 8_4:+45207350 | Msa1327770:CDS |
GAAGAAGAGAAGCCCAAAGA+TGG | 0.528620 | 8_4:+45208800 | Msa1327770:CDS |
CATTGACAAAGATGCGAAGA+AGG | 0.529371 | 8_4:+45208044 | Msa1327770:CDS |
ACCAGTGGGCTGAGAAGTAG+AGG | 0.529711 | 8_4:-45208235 | None:intergenic |
TACGATGAACTCTCTCCAAA+CGG | 0.530988 | 8_4:+45207100 | Msa1327770:CDS |
GACTCTTCTTCATTATCTAA+GGG | 0.532377 | 8_4:-45207733 | None:intergenic |
AAGAATTAGAAAGTGTGCCT+TGG | 0.535581 | 8_4:+45207764 | Msa1327770:CDS |
ATACCCTTTCACATCAGAAA+GGG | 0.537407 | 8_4:+45207351 | Msa1327770:CDS |
TGCAAAGGGGTGGCCTGAGA+AGG | 0.540645 | 8_4:+45208607 | Msa1327770:CDS |
GTGTCTCTGAATCAGAAAAT+GGG | 0.541094 | 8_4:-45207207 | None:intergenic |
GAACACAGACTAGGCGAACA+AGG | 0.542322 | 8_4:-45205673 | None:intergenic |
ATCAAGAAGAGGAAGCTAAG+AGG | 0.542413 | 8_4:+45207389 | Msa1327770:CDS |
ATCCGTGTTTATGGAGCTGA+AGG | 0.542459 | 8_4:+45207328 | Msa1327770:CDS |
GCCCAATTGCCACGAGCTTG+GGG | 0.546174 | 8_4:-45208469 | None:intergenic |
GTTCCAATAACAACCAAGGT+AGG | 0.546605 | 8_4:-45207853 | None:intergenic |
AAGAGAAGCCCAAAGATGGA+TGG | 0.550982 | 8_4:+45208804 | Msa1327770:CDS |
AGAGTTGAAAGATCAAGAAG+AGG | 0.554619 | 8_4:+45207378 | Msa1327770:CDS |
ATCAACCCCATGATCCTCAA+TGG | 0.561806 | 8_4:-45207911 | None:intergenic |
GGACGTCTTATTTATAGGAG+TGG | 0.562679 | 8_4:-45205652 | None:intergenic |
GTATTGAATTAGTTTCGCAC+AGG | 0.568373 | 8_4:-45207812 | None:intergenic |
TTCCCCTCTAACTCTGACAC+CGG | 0.568510 | 8_4:-45208203 | None:intergenic |
AGGTCTGGTTGGGCTTTATG+GGG | 0.570437 | 8_4:+45208523 | Msa1327770:CDS |
TAATGCCGCTGAGGCCATTG+AGG | 0.572119 | 8_4:+45207897 | Msa1327770:CDS |
TCATGGTGTGGTCCGTGTCG+AGG | 0.572429 | 8_4:+45207052 | Msa1327770:CDS |
TTACATGAAACAGTTCATCA+AGG | 0.576778 | 8_4:-45207237 | None:intergenic |
AGAGAAGCCCAAAGATGGAT+GGG | 0.577163 | 8_4:+45208805 | Msa1327770:CDS |
AATTGTGCGCTGGGAGACAA+AGG | 0.578428 | 8_4:+45208758 | Msa1327770:CDS |
TTTGGAAGAAAAGCACGGCA+TGG | 0.578921 | 8_4:-45208263 | None:intergenic |
TGGAAGAAAAGCACGGCATG+GGG | 0.579522 | 8_4:-45208261 | None:intergenic |
ATTCACTCCAACGTTGGTGG+AGG | 0.582019 | 8_4:+45207075 | Msa1327770:CDS |
CGATGAAATAGCGAAGGCCA+AGG | 0.585479 | 8_4:+45207969 | Msa1327770:CDS |
CCAAAAGGATGACATTGCAA+AGG | 0.586191 | 8_4:+45208592 | Msa1327770:CDS |
CTCGTGGCAATTGGGCCAAG+TGG | 0.588439 | 8_4:+45208476 | Msa1327770:CDS |
ATTTAATCAAAAGCTTAAGG+AGG | 0.590041 | 8_4:+45207660 | Msa1327770:CDS |
TTCCAATAACAACCAAGGTA+GGG | 0.592147 | 8_4:-45207852 | None:intergenic |
TCGAGGATTCACTCCAACGT+TGG | 0.595933 | 8_4:+45207069 | Msa1327770:CDS |
CCAATACCGATCTCAAGGAC+TGG | 0.597503 | 8_4:-45207414 | None:intergenic |
GAGGAACCAGTCCTTGAGAT+CGG | 0.598222 | 8_4:+45207408 | Msa1327770:CDS |
CACAAAGTCACGGGAACGAG+AGG | 0.599551 | 8_4:-45207437 | None:intergenic |
GACTTTGTGATATCATCCGA+TGG | 0.599839 | 8_4:+45207451 | Msa1327770:CDS |
AGGAAGCATAAATGGTGCCA+AGG | 0.600015 | 8_4:+45208778 | Msa1327770:CDS |
GTTCCGGTGTCAGAGTTAGA+GGG | 0.603592 | 8_4:+45208200 | Msa1327770:CDS |
CACTCACTCTCCAGGAACAA+TGG | 0.603918 | 8_4:+45205717 | Msa1327770:exon |
AGGATTCACTCCAACGTTGG+TGG | 0.604343 | 8_4:+45207072 | Msa1327770:CDS |
AAAGATGGATGGGTTTGTGA+TGG | 0.605439 | 8_4:+45208815 | Msa1327770:CDS |
AGAGGCCAATACCGATCTCA+AGG | 0.608936 | 8_4:-45207419 | None:intergenic |
GGATGATATCACAAAGTCAC+GGG | 0.610022 | 8_4:-45207446 | None:intergenic |
AAACAAGAAGAACACAGACT+AGG | 0.610971 | 8_4:-45205682 | None:intergenic |
CGGATGATATCACAAAGTCA+CGG | 0.612088 | 8_4:-45207447 | None:intergenic |
TGTGATGGTTGTGAGGATGA+GGG | 0.617819 | 8_4:+45208686 | Msa1327770:CDS |
CTCAGCCGATAAAGATGATG+AGG | 0.619000 | 8_4:+45207144 | Msa1327770:CDS |
TCATCAAGCAATGCAAGATG+AGG | 0.620375 | 8_4:-45207268 | None:intergenic |
TTATTGCTGTGATGGTTGTG+AGG | 0.621592 | 8_4:+45208679 | Msa1327770:CDS |
CCAAAGGGAAGTGCCAGCCA+TGG | 0.621888 | 8_4:-45208398 | None:intergenic |
ATGATCCTCAATGGCCTCAG+CGG | 0.626422 | 8_4:-45207902 | None:intergenic |
AATTCTTTGCGGGAATGCCA+TGG | 0.628513 | 8_4:+45208381 | Msa1327770:CDS |
ATCTGTTCCAATAACAACCA+AGG | 0.629095 | 8_4:-45207857 | None:intergenic |
CAGTTGTAGTACCTGATCGC+CGG | 0.631584 | 8_4:-45205818 | None:intergenic |
AGGATGACATTGCAAAGGGG+TGG | 0.634262 | 8_4:+45208597 | Msa1327770:CDS |
ATCCTTCAGCTCCATAAACA+CGG | 0.636117 | 8_4:-45207330 | None:intergenic |
TGGTTGTTATTGGAACAGAT+GGG | 0.643959 | 8_4:+45207860 | Msa1327770:CDS |
ATCTGGCATCCCCAAGCTCG+TGG | 0.647534 | 8_4:+45208460 | Msa1327770:CDS |
TTCCGGTGTCAGAGTTAGAG+GGG | 0.651542 | 8_4:+45208201 | Msa1327770:CDS |
TGAACTCGATGAAATAGCGA+AGG | 0.654732 | 8_4:+45207963 | Msa1327770:CDS |
AGTGGGCTGAGAAGTAGAGG+AGG | 0.655615 | 8_4:-45208232 | None:intergenic |
TGAGGCCATTGAGGATCATG+GGG | 0.663531 | 8_4:+45207906 | Msa1327770:CDS |
GAAAATGGGATAGCCAGCCA+TGG | 0.663538 | 8_4:-45207193 | None:intergenic |
ATTTATAGGAGTGGAAAGCG+TGG | 0.675779 | 8_4:-45205643 | None:intergenic |
TCTACATCCTAATGCCGCTG+AGG | 0.677477 | 8_4:+45207888 | Msa1327770:CDS |
TCACTCTCCAGGAACAATGG+CGG | 0.684799 | 8_4:+45205720 | Msa1327770:exon |
ACTGTCACGAAAGAAGCTCG+AGG | 0.699376 | 8_4:+45208503 | Msa1327770:CDS |
TATAGGAGTGGAAAGCGTGG+AGG | 0.701516 | 8_4:-45205640 | None:intergenic |
TTGAGAGGCAAGGATAACCA+AGG | 0.706344 | 8_4:-45207781 | None:intergenic |
TCGTAGACCTCCACCAACGT+TGG | 0.707472 | 8_4:-45207082 | None:intergenic |
TGAAATAGCGAAGGCCAAGG+AGG | 0.711233 | 8_4:+45207972 | Msa1327770:CDS |
GGAAGAAAAGCACGGCATGG+GGG | 0.711566 | 8_4:-45208260 | None:intergenic |
AAAAGGATGACATTGCAAAG+GGG | 0.737416 | 8_4:+45208594 | Msa1327770:CDS |
GTTGGAGTGAATCCTCGACA+CGG | 0.764812 | 8_4:-45207064 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAAAAAAAAAAAATTATTAG+GGG | + | chr8_4:45206709-45206728 | Msa1327770:intron | 10.0% |
!! | AAAAAAAAAAAATTATTAGG+GGG | + | chr8_4:45206710-45206729 | Msa1327770:intron | 10.0% |
!!! | ATTTTATAACATAAATTTAC+TGG | + | chr8_4:45208073-45208092 | Msa1327770:intron | 10.0% |
!! | TTAATAACAAATTAAAAAGA+GGG | - | chr8_4:45208126-45208145 | None:intergenic | 10.0% |
!! | ATTAATAACAAATTAAAAAG+AGG | - | chr8_4:45208127-45208146 | None:intergenic | 10.0% |
!!! | AAACAAAACTATACAATTTT+TGG | + | chr8_4:45205963-45205982 | Msa1327770:intron | 15.0% |
!! | ATGTTGGTATATAATATATT+TGG | - | chr8_4:45206565-45206584 | None:intergenic | 15.0% |
!! | TATGAAATAATTTGAATCTT+TGG | + | chr8_4:45208939-45208958 | Msa1327770:three_prime_UTR | 15.0% |
!! | TTCATAAAACACAACAAAAA+AGG | - | chr8_4:45205872-45205891 | None:intergenic | 20.0% |
!!! | ATAAATTGGATTTGAAATGA+GGG | - | chr8_4:45206315-45206334 | None:intergenic | 20.0% |
!!! | TATAAATTGGATTTGAAATG+AGG | - | chr8_4:45206316-45206335 | None:intergenic | 20.0% |
!! | TTCTTTCAAAAAAGTGAATT+CGG | + | chr8_4:45206406-45206425 | Msa1327770:intron | 20.0% |
!! | GTTGGAAATATATAGAAAAA+TGG | - | chr8_4:45206790-45206809 | None:intergenic | 20.0% |
!!! | TCTCATATTTTGAAATTTAC+AGG | + | chr8_4:45206979-45206998 | Msa1327770:intron | 20.0% |
!! | TCTATTTAATCAAAAGCTTA+AGG | + | chr8_4:45207657-45207676 | Msa1327770:CDS | 20.0% |
! | TTAATTGCATATATGCAACA+AGG | - | chr8_4:45206054-45206073 | None:intergenic | 25.0% |
! | TTGTTGCATATATGCAATTA+AGG | + | chr8_4:45206053-45206072 | Msa1327770:intron | 25.0% |
! | TGTTGCATATATGCAATTAA+GGG | + | chr8_4:45206054-45206073 | Msa1327770:intron | 25.0% |
!! | TAAATTGGATTTGAAATGAG+GGG | - | chr8_4:45206314-45206333 | None:intergenic | 25.0% |
!!! | CTATTGTGGTGATATTTTTT+TGG | - | chr8_4:45206521-45206540 | None:intergenic | 25.0% |
!! | TGAAAACTTAGACTTTGTTT+GGG | - | chr8_4:45206848-45206867 | None:intergenic | 25.0% |
! | ATGAAAACTTAGACTTTGTT+TGG | - | chr8_4:45206849-45206868 | None:intergenic | 25.0% |
! | TATATGACAGTTATTTGAAG+TGG | + | chr8_4:45206907-45206926 | Msa1327770:intron | 25.0% |
!! | GTTAAAATTGATAGCTTGAA+GGG | + | chr8_4:45207001-45207020 | Msa1327770:CDS | 25.0% |
! | TTAACTCAGTATGATATAGT+AGG | + | chr8_4:45207494-45207513 | Msa1327770:intron | 25.0% |
! | AACAACCAGATAATAACAAA+AGG | - | chr8_4:45207522-45207541 | None:intergenic | 25.0% |
!!! | TTTGTTATTATCTGGTTGTT+TGG | + | chr8_4:45207522-45207541 | Msa1327770:intron | 25.0% |
!!! | TTTTGATTAAATAGAGTGCA+TGG | - | chr8_4:45207652-45207671 | None:intergenic | 25.0% |
! | ATTTAATCAAAAGCTTAAGG+AGG | + | chr8_4:45207660-45207679 | Msa1327770:CDS | 25.0% |
! | AATTAAAAAGAGGGAATGAT+GGG | - | chr8_4:45208117-45208136 | None:intergenic | 25.0% |
! | AAATTAAAAAGAGGGAATGA+TGG | - | chr8_4:45208118-45208137 | None:intergenic | 25.0% |
! | ATCCTTTAATGAATTCTTTG+CGG | + | chr8_4:45208370-45208389 | Msa1327770:CDS | 25.0% |
! | AGAGAGAATAAAAGAAATAG+AGG | + | chr8_4:45208568-45208587 | Msa1327770:CDS | 25.0% |
! | TGTTATATCTTAGTGATTAC+TGG | + | chr8_4:45208868-45208887 | Msa1327770:three_prime_UTR | 25.0% |
! | AATCTTTGGATATTGTGATA+TGG | + | chr8_4:45208953-45208972 | Msa1327770:intron | 25.0% |
!! | AGGAGAATAACCATAATTTT+TGG | - | chr8_4:45209026-45209045 | None:intergenic | 25.0% |
!! | AACAAGGACGTCTTATTTAT+AGG | - | chr8_4:45205660-45205679 | None:intergenic | 30.0% |
AAAAAGGAGAAGAGAAGTAA+CGG | - | chr8_4:45205856-45205875 | None:intergenic | 30.0% | |
! | ATGTATTCTATCAGAAGTGT+CGG | - | chr8_4:45206095-45206114 | None:intergenic | 30.0% |
TGGAAGAAATAGAAGACATT+GGG | + | chr8_4:45206243-45206262 | Msa1327770:intron | 30.0% | |
! | AAATTGGATTTGAAATGAGG+GGG | - | chr8_4:45206313-45206332 | None:intergenic | 30.0% |
TTTCAAAAAAGTGAATTCGG+TGG | + | chr8_4:45206409-45206428 | Msa1327770:intron | 30.0% | |
!! | TGTGAACTAAAAGTGTCTTA+GGG | + | chr8_4:45206663-45206682 | Msa1327770:intron | 30.0% |
ATGGACAAAAAATTCACACA+GGG | - | chr8_4:45206771-45206790 | None:intergenic | 30.0% | |
AATGGACAAAAAATTCACAC+AGG | - | chr8_4:45206772-45206791 | None:intergenic | 30.0% | |
! | ACAAAGTCTAAGTTTTCATG+TGG | + | chr8_4:45206850-45206869 | Msa1327770:intron | 30.0% |
TTTATTTGTACTTGTACCGA+TGG | + | chr8_4:45206934-45206953 | Msa1327770:intron | 30.0% | |
! | GGTTAAAATTGATAGCTTGA+AGG | + | chr8_4:45207000-45207019 | Msa1327770:intron | 30.0% |
!! | GTTTCTATTTTTCAGCATCA+TGG | + | chr8_4:45207035-45207054 | Msa1327770:CDS | 30.0% |
AAAAGCCTCATCATCTTTAT+CGG | - | chr8_4:45207152-45207171 | None:intergenic | 30.0% | |
TTACATGAAACAGTTCATCA+AGG | - | chr8_4:45207240-45207259 | None:intergenic | 30.0% | |
GATGAACTGTTTCATGTAAA+CGG | + | chr8_4:45207241-45207260 | Msa1327770:CDS | 30.0% | |
GGAAAAGTTATTACTGAAGA+TGG | + | chr8_4:45207295-45207314 | Msa1327770:CDS | 30.0% | |
!!! | AGGTTCCTTTTGTTATTATC+TGG | + | chr8_4:45207514-45207533 | Msa1327770:intron | 30.0% |
TACAAAAAGCTGAAGGAAAA+TGG | + | chr8_4:45207685-45207704 | Msa1327770:CDS | 30.0% | |
ACAAAAAGCTGAAGGAAAAT+GGG | + | chr8_4:45207686-45207705 | Msa1327770:CDS | 30.0% | |
GACTCTTCTTCATTATCTAA+GGG | - | chr8_4:45207736-45207755 | None:intergenic | 30.0% | |
TGACTCTTCTTCATTATCTA+AGG | - | chr8_4:45207737-45207756 | None:intergenic | 30.0% | |
ATTAAAAAGAGGGAATGATG+GGG | - | chr8_4:45208116-45208135 | None:intergenic | 30.0% | |
TTAGCATTTATCTCCATTTC+AGG | + | chr8_4:45208178-45208197 | Msa1327770:intron | 30.0% | |
! | TTTTCTTCCAAAACTCATTG+AGG | + | chr8_4:45208274-45208293 | Msa1327770:CDS | 30.0% |
! | TGTTTTGTGCCTTAATCTTA+TGG | - | chr8_4:45208304-45208323 | None:intergenic | 30.0% |
TCCTTTAATGAATTCTTTGC+GGG | + | chr8_4:45208371-45208390 | Msa1327770:CDS | 30.0% | |
TTTATTCTCTCTTCAGTGAA+AGG | - | chr8_4:45208560-45208579 | None:intergenic | 30.0% | |
AGATATAACAAGCAGATTTC+AGG | - | chr8_4:45208858-45208877 | None:intergenic | 30.0% | |
AAACAAGAAGAACACAGACT+AGG | - | chr8_4:45205685-45205704 | None:intergenic | 35.0% | |
GACACTTCTGATAGAATACA+TGG | + | chr8_4:45206094-45206113 | Msa1327770:intron | 35.0% | |
ACTTCTGATAGAATACATGG+TGG | + | chr8_4:45206097-45206116 | Msa1327770:intron | 35.0% | |
!! | ATACATGGTGGATTTAGTAG+TGG | + | chr8_4:45206109-45206128 | Msa1327770:intron | 35.0% |
!! | AGTTGACTAAGGCTTTGTTT+GGG | + | chr8_4:45206171-45206190 | Msa1327770:intron | 35.0% |
GTGGAAGAAATAGAAGACAT+TGG | + | chr8_4:45206242-45206261 | Msa1327770:intron | 35.0% | |
AAGAAATAGAAGACATTGGG+AGG | + | chr8_4:45206246-45206265 | Msa1327770:intron | 35.0% | |
!! | GTGTGAACTAAAAGTGTCTT+AGG | + | chr8_4:45206662-45206681 | Msa1327770:intron | 35.0% |
!! | GTGAACTAAAAGTGTCTTAG+GGG | + | chr8_4:45206664-45206683 | Msa1327770:intron | 35.0% |
TGGACAAAAAATTCACACAG+GGG | - | chr8_4:45206770-45206789 | None:intergenic | 35.0% | |
! | TTAGACTTTGTTTGGGAGTT+TGG | - | chr8_4:45206841-45206860 | None:intergenic | 35.0% |
! | GTTTTTCTTACTTGACACTG+TGG | + | chr8_4:45206884-45206903 | Msa1327770:intron | 35.0% |
ACCACAACACAATATTCCAT+CGG | - | chr8_4:45206953-45206972 | None:intergenic | 35.0% | |
!! | TATTTTTCAGCATCATGGTG+TGG | + | chr8_4:45207040-45207059 | Msa1327770:CDS | 35.0% |
GTGTCTCTGAATCAGAAAAT+GGG | - | chr8_4:45207210-45207229 | None:intergenic | 35.0% | |
GTTCACATTATCCGTGTTTA+TGG | + | chr8_4:45207319-45207338 | Msa1327770:CDS | 35.0% | |
ATACCCTTTCACATCAGAAA+GGG | + | chr8_4:45207351-45207370 | Msa1327770:CDS | 35.0% | |
AGAGTTGAAAGATCAAGAAG+AGG | + | chr8_4:45207378-45207397 | Msa1327770:CDS | 35.0% | |
CTAGCTTACTTCATTTCCAT+CGG | - | chr8_4:45207470-45207489 | None:intergenic | 35.0% | |
CATGAAAGGAAAAGTGAGAT+TGG | - | chr8_4:45207556-45207575 | None:intergenic | 35.0% | |
CAAAAAGCTGAAGGAAAATG+GGG | + | chr8_4:45207687-45207706 | Msa1327770:CDS | 35.0% | |
! | AAGAATTAGAAAGTGTGCCT+TGG | + | chr8_4:45207764-45207783 | Msa1327770:CDS | 35.0% |
! | GTATTGAATTAGTTTCGCAC+AGG | - | chr8_4:45207815-45207834 | None:intergenic | 35.0% |
TTCCAATAACAACCAAGGTA+GGG | - | chr8_4:45207855-45207874 | None:intergenic | 35.0% | |
ATCTGTTCCAATAACAACCA+AGG | - | chr8_4:45207860-45207879 | None:intergenic | 35.0% | |
! | TTGGTTGTTATTGGAACAGA+TGG | + | chr8_4:45207859-45207878 | Msa1327770:CDS | 35.0% |
! | TGGTTGTTATTGGAACAGAT+GGG | + | chr8_4:45207860-45207879 | Msa1327770:CDS | 35.0% |
!! | GAAAACTTTTCAGGAGTGAA+TGG | - | chr8_4:45207943-45207962 | None:intergenic | 35.0% |
! | TCGAGTTCAGAAAACTTTTC+AGG | - | chr8_4:45207952-45207971 | None:intergenic | 35.0% |
! | TCAAACACTTGAGTCAGTTT+TGG | + | chr8_4:45207999-45208018 | Msa1327770:CDS | 35.0% |
TTAAAAAGAGGGAATGATGG+GGG | - | chr8_4:45208115-45208134 | None:intergenic | 35.0% | |
!! | TTTATCTCCATTTCAGGTTC+CGG | + | chr8_4:45208184-45208203 | Msa1327770:intron | 35.0% |
!!! | TGAGTTTTGGAAGAAAAGCA+CGG | - | chr8_4:45208271-45208290 | None:intergenic | 35.0% |
TGAGGCATACCATAAGATTA+AGG | + | chr8_4:45208292-45208311 | Msa1327770:CDS | 35.0% | |
TCCCGCAAAGAATTCATTAA+AGG | - | chr8_4:45208375-45208394 | None:intergenic | 35.0% | |
! | TCTTTTCTTGTGTCACCAAA+GGG | - | chr8_4:45208416-45208435 | None:intergenic | 35.0% |
! | TTCTTTTCTTGTGTCACCAA+AGG | - | chr8_4:45208417-45208436 | None:intergenic | 35.0% |
ATTCTTGAGTCGCAAATTCA+AGG | + | chr8_4:45208436-45208455 | Msa1327770:CDS | 35.0% | |
AAAAGAAATAGAGGCCCAAA+AGG | + | chr8_4:45208577-45208596 | Msa1327770:CDS | 35.0% | |
! | CTTTGCAATGTCATCCTTTT+GGG | - | chr8_4:45208594-45208613 | None:intergenic | 35.0% |
CAAAAGGATGACATTGCAAA+GGG | + | chr8_4:45208593-45208612 | Msa1327770:CDS | 35.0% | |
AAAAGGATGACATTGCAAAG+GGG | + | chr8_4:45208594-45208613 | Msa1327770:CDS | 35.0% | |
AGTCATCAGGCCAAAAATTA+TGG | + | chr8_4:45209013-45209032 | Msa1327770:three_prime_UTR | 35.0% | |
ATTTATAGGAGTGGAAAGCG+TGG | - | chr8_4:45205646-45205665 | None:intergenic | 40.0% | |
!! | GGACGTCTTATTTATAGGAG+TGG | - | chr8_4:45205655-45205674 | None:intergenic | 40.0% |
CGAAGAAGAAAGTCTCTATC+AGG | - | chr8_4:45205793-45205812 | None:intergenic | 40.0% | |
! | GAAGAGAAGTAACGGAGTTA+CGG | - | chr8_4:45205848-45205867 | None:intergenic | 40.0% |
ACATTGACCAGAGTTGACTA+AGG | + | chr8_4:45206160-45206179 | Msa1327770:intron | 40.0% | |
AACAAAGCCTTAGTCAACTC+TGG | - | chr8_4:45206170-45206189 | None:intergenic | 40.0% | |
!! | GAGTTGACTAAGGCTTTGTT+TGG | + | chr8_4:45206170-45206189 | Msa1327770:intron | 40.0% |
!! | TAAGGCTTTGTTTGGGAGTT+TGG | + | chr8_4:45206178-45206197 | Msa1327770:intron | 40.0% |
!! | GGAGGATTTTGGAAAAAGGA+AGG | + | chr8_4:45206214-45206233 | Msa1327770:intron | 40.0% |
TGGAAAAAGGAAGGAACAAG+TGG | + | chr8_4:45206223-45206242 | Msa1327770:intron | 40.0% | |
! | CAAAAAAGTGAATTCGGTGG+CGG | + | chr8_4:45206412-45206431 | Msa1327770:intron | 40.0% |
CGGATCTTGCCGAAAATATT+GGG | + | chr8_4:45206432-45206451 | Msa1327770:intron | 40.0% | |
GGATCTTGCCGAAAATATTG+GGG | + | chr8_4:45206433-45206452 | Msa1327770:intron | 40.0% | |
GATCTTGCCGAAAATATTGG+GGG | + | chr8_4:45206434-45206453 | Msa1327770:intron | 40.0% | |
ATCTTGCCGAAAATATTGGG+GGG | + | chr8_4:45206435-45206454 | Msa1327770:intron | 40.0% | |
!! | GAATCGCGTTTTGATACATG+AGG | + | chr8_4:45206594-45206613 | Msa1327770:intron | 40.0% |
TTTGATACATGAGGATGGAG+AGG | + | chr8_4:45206603-45206622 | Msa1327770:intron | 40.0% | |
! | TTTTGTCTGAGTCTCTCTCT+CGG | - | chr8_4:45206639-45206658 | None:intergenic | 40.0% |
!! | AAAATTATTAGGGGGTGCCA+CGG | + | chr8_4:45206718-45206737 | Msa1327770:intron | 40.0% |
ACAAAAAATTCACACAGGGG+CGG | - | chr8_4:45206767-45206786 | None:intergenic | 40.0% | |
! | ACTTTGTTTGGGAGTTTGGA+GGG | - | chr8_4:45206837-45206856 | None:intergenic | 40.0% |
ACCGATGGAATATTGTGTTG+TGG | + | chr8_4:45206949-45206968 | Msa1327770:intron | 40.0% | |
AGCTTGAAGGGAAAGAAACT+TGG | + | chr8_4:45207013-45207032 | Msa1327770:CDS | 40.0% | |
TACGATGAACTCTCTCCAAA+CGG | + | chr8_4:45207100-45207119 | Msa1327770:CDS | 40.0% | |
CGTGTCTCTGAATCAGAAAA+TGG | - | chr8_4:45207211-45207230 | None:intergenic | 40.0% | |
TCATCAAGCAATGCAAGATG+AGG | - | chr8_4:45207271-45207290 | None:intergenic | 40.0% | |
ATCCTTCAGCTCCATAAACA+CGG | - | chr8_4:45207333-45207352 | None:intergenic | 40.0% | |
GATACCCTTTCACATCAGAA+AGG | + | chr8_4:45207350-45207369 | Msa1327770:CDS | 40.0% | |
GAACCCTTTCTGATGTGAAA+GGG | - | chr8_4:45207357-45207376 | None:intergenic | 40.0% | |
TGAACCCTTTCTGATGTGAA+AGG | - | chr8_4:45207358-45207377 | None:intergenic | 40.0% | |
ATCAAGAAGAGGAAGCTAAG+AGG | + | chr8_4:45207389-45207408 | Msa1327770:CDS | 40.0% | |
GGATGATATCACAAAGTCAC+GGG | - | chr8_4:45207449-45207468 | None:intergenic | 40.0% | |
CGGATGATATCACAAAGTCA+CGG | - | chr8_4:45207450-45207469 | None:intergenic | 40.0% | |
GACTTTGTGATATCATCCGA+TGG | + | chr8_4:45207451-45207470 | Msa1327770:CDS | 40.0% | |
GTATCTGTTGTGCACATGAA+AGG | - | chr8_4:45207570-45207589 | None:intergenic | 40.0% | |
ATACCTATCTCTGAGCTTGA+GGG | + | chr8_4:45207586-45207605 | Msa1327770:CDS | 40.0% | |
GGAGGTTTACAAAAAGCTGA+AGG | + | chr8_4:45207678-45207697 | Msa1327770:CDS | 40.0% | |
GTTCCAATAACAACCAAGGT+AGG | - | chr8_4:45207856-45207875 | None:intergenic | 40.0% | |
TGAACTCGATGAAATAGCGA+AGG | + | chr8_4:45207963-45207982 | Msa1327770:CDS | 40.0% | |
CATTGACAAAGATGCGAAGA+AGG | + | chr8_4:45208044-45208063 | Msa1327770:CDS | 40.0% | |
! | TGGTATGCCTCAATGAGTTT+TGG | - | chr8_4:45208284-45208303 | None:intergenic | 40.0% |
AAACAATGACGCACTTGAAG+TGG | + | chr8_4:45208319-45208338 | Msa1327770:CDS | 40.0% | |
! | TGGTTTTCATCTCAAGTGAC+AGG | + | chr8_4:45208339-45208358 | Msa1327770:CDS | 40.0% |
! | GGTTTTCATCTCAAGTGACA+GGG | + | chr8_4:45208340-45208359 | Msa1327770:CDS | 40.0% |
! | AGTCGCAAATTCAAGGTATC+TGG | + | chr8_4:45208443-45208462 | Msa1327770:CDS | 40.0% |
! | CCTTTGCAATGTCATCCTTT+TGG | - | chr8_4:45208595-45208614 | None:intergenic | 40.0% |
CCAAAAGGATGACATTGCAA+AGG | + | chr8_4:45208592-45208611 | Msa1327770:CDS | 40.0% | |
CGCAATGTTTATTGCTGTGA+TGG | + | chr8_4:45208671-45208690 | Msa1327770:CDS | 40.0% | |
TTATTGCTGTGATGGTTGTG+AGG | + | chr8_4:45208679-45208698 | Msa1327770:CDS | 40.0% | |
! | GGAGACAAAGGAAGCATAAA+TGG | + | chr8_4:45208770-45208789 | Msa1327770:CDS | 40.0% |
TCACAAACCCATCCATCTTT+GGG | - | chr8_4:45208815-45208834 | None:intergenic | 40.0% | |
ATCACAAACCCATCCATCTT+TGG | - | chr8_4:45208816-45208835 | None:intergenic | 40.0% | |
! | AAAGATGGATGGGTTTGTGA+TGG | + | chr8_4:45208815-45208834 | Msa1327770:CDS | 40.0% |
AACAAGCAGATTTCAGGCTT+TGG | - | chr8_4:45208852-45208871 | None:intergenic | 40.0% | |
TCTTTAGTCACTCACTCTCC+AGG | + | chr8_4:45205709-45205728 | Msa1327770:five_prime_UTR | 45.0% | |
GACTTTCTTCTTCGCAACAC+CGG | + | chr8_4:45205799-45205818 | Msa1327770:CDS | 45.0% | |
!! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr8_4:45206182-45206201 | Msa1327770:intron | 45.0% |
! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr8_4:45206183-45206202 | Msa1327770:intron | 45.0% |
!! | GAGGGGAGGATTTTGGAAAA+AGG | + | chr8_4:45206210-45206229 | Msa1327770:intron | 45.0% |
ATAGAAGACATTGGGAGGAG+AGG | + | chr8_4:45206251-45206270 | Msa1327770:intron | 45.0% | |
TAGAAGACATTGGGAGGAGA+GGG | + | chr8_4:45206252-45206271 | Msa1327770:intron | 45.0% | |
GCGGATCTTGCCGAAAATAT+TGG | + | chr8_4:45206431-45206450 | Msa1327770:intron | 45.0% | |
GTCTCGTGTTTGAGCTATTG+TGG | - | chr8_4:45206535-45206554 | None:intergenic | 45.0% | |
GCGATTCTCACTTCTCATGT+TGG | - | chr8_4:45206581-45206600 | None:intergenic | 45.0% | |
!! | CGCGTTTTGATACATGAGGA+TGG | + | chr8_4:45206598-45206617 | Msa1327770:intron | 45.0% |
! | CTTTGTTTGGGAGTTTGGAG+GGG | - | chr8_4:45206183-45206202 | None:intergenic | 45.0% |
! | GACTTTGTTTGGGAGTTTGG+AGG | - | chr8_4:45206838-45206857 | None:intergenic | 45.0% |
ACAACCTCAAAGTCACCGTT+TGG | - | chr8_4:45207118-45207137 | None:intergenic | 45.0% | |
CTCAGCCGATAAAGATGATG+AGG | + | chr8_4:45207144-45207163 | Msa1327770:CDS | 45.0% | |
!!! | GCTACTTTTCCAAGATGCCA+TGG | + | chr8_4:45207176-45207195 | Msa1327770:CDS | 45.0% |
CTTGCATTGCTTGATGAAGC+TGG | + | chr8_4:45207274-45207293 | Msa1327770:CDS | 45.0% | |
ATCCGTGTTTATGGAGCTGA+AGG | + | chr8_4:45207328-45207347 | Msa1327770:CDS | 45.0% | |
GATACCTATCTCTGAGCTTG+AGG | + | chr8_4:45207585-45207604 | Msa1327770:intron | 45.0% | |
TTTCCCTCAAGCTCAGAGAT+AGG | - | chr8_4:45207592-45207611 | None:intergenic | 45.0% | |
TTGAGAGGCAAGGATAACCA+AGG | - | chr8_4:45207784-45207803 | None:intergenic | 45.0% | |
TTGGTTATCCTTGCCTCTCA+AGG | + | chr8_4:45207783-45207802 | Msa1327770:CDS | 45.0% | |
CTCCCTACCTTGGTTGTTAT+TGG | + | chr8_4:45207850-45207869 | Msa1327770:CDS | 45.0% | |
ATCAACCCCATGATCCTCAA+TGG | - | chr8_4:45207914-45207933 | None:intergenic | 45.0% | |
! | AAGTGTTTGAGATGCCTCCT+TGG | - | chr8_4:45207989-45208008 | None:intergenic | 45.0% |
!!! | CTTGAGTCAGTTTTGGTGTC+TGG | + | chr8_4:45208006-45208025 | Msa1327770:CDS | 45.0% |
! | TTGGAAGAAAAGCACGGCAT+GGG | - | chr8_4:45208265-45208284 | None:intergenic | 45.0% |
! | TTTGGAAGAAAAGCACGGCA+TGG | - | chr8_4:45208266-45208285 | None:intergenic | 45.0% |
AATTCTTTGCGGGAATGCCA+TGG | + | chr8_4:45208381-45208400 | Msa1327770:CDS | 45.0% | |
TGTGATGGTTGTGAGGATGA+GGG | + | chr8_4:45208686-45208705 | Msa1327770:CDS | 45.0% | |
GTGAGGATGAGGGAGATAAT+TGG | + | chr8_4:45208696-45208715 | Msa1327770:CDS | 45.0% | |
! | AGGAAGCATAAATGGTGCCA+AGG | + | chr8_4:45208778-45208797 | Msa1327770:CDS | 45.0% |
TTTGGGCTTCTCTTCTTCCT+TGG | - | chr8_4:45208798-45208817 | None:intergenic | 45.0% | |
GAAGAAGAGAAGCCCAAAGA+TGG | + | chr8_4:45208800-45208819 | Msa1327770:CDS | 45.0% | |
AAGAGAAGCCCAAAGATGGA+TGG | + | chr8_4:45208804-45208823 | Msa1327770:CDS | 45.0% | |
AGAGAAGCCCAAAGATGGAT+GGG | + | chr8_4:45208805-45208824 | Msa1327770:CDS | 45.0% | |
AATCTTGTGCACGAGTCATC+AGG | + | chr8_4:45209000-45209019 | Msa1327770:three_prime_UTR | 45.0% | |
!! | AATATAATAACAATATAAAT+TGG | - | chr8_4:45206329-45206348 | None:intergenic | 5.0% |
!! | TACAAAAAAAAAAAATTATT+AGG | + | chr8_4:45206707-45206726 | Msa1327770:intron | 5.0% |
!! | ACAAAAAAAAAAAATTATTA+GGG | + | chr8_4:45206708-45206727 | Msa1327770:intron | 5.0% |
!!! | ATTAATAACAATTTTTTTTT+TGG | - | chr8_4:45208155-45208174 | None:intergenic | 5.0% |
! | TATAGGAGTGGAAAGCGTGG+AGG | - | chr8_4:45205643-45205662 | None:intergenic | 50.0% |
GAACACAGACTAGGCGAACA+AGG | - | chr8_4:45205676-45205695 | None:intergenic | 50.0% | |
CACTCACTCTCCAGGAACAA+TGG | + | chr8_4:45205717-45205736 | Msa1327770:exon | 50.0% | |
TCACTCTCCAGGAACAATGG+CGG | + | chr8_4:45205720-45205739 | Msa1327770:exon | 50.0% | |
ACAGAATCCGCCATTGTTCC+TGG | - | chr8_4:45205730-45205749 | None:intergenic | 50.0% | |
CAGTTGTAGTACCTGATCGC+CGG | - | chr8_4:45205821-45205840 | None:intergenic | 50.0% | |
! | GAGAAGTAACGGAGTTACGG+TGG | - | chr8_4:45205845-45205864 | None:intergenic | 50.0% |
!! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr8_4:45206181-45206200 | Msa1327770:intron | 50.0% |
! | ACATTGGGAGGAGAGGGTTT+TGG | + | chr8_4:45206258-45206277 | Msa1327770:intron | 50.0% |
! | ACCGCACCCCCCAATATTTT+CGG | - | chr8_4:45206444-45206463 | None:intergenic | 50.0% |
TACATGAGGATGGAGAGGAG+AGG | + | chr8_4:45206608-45206627 | Msa1327770:intron | 50.0% | |
ACATGAGGATGGAGAGGAGA+GGG | + | chr8_4:45206609-45206628 | Msa1327770:intron | 50.0% | |
TTTGGGAGTTTGGAGGGGAA+GGG | - | chr8_4:45206831-45206850 | None:intergenic | 50.0% | |
GTTGGAGTGAATCCTCGACA+CGG | - | chr8_4:45207067-45207086 | None:intergenic | 50.0% | |
TCGAGGATTCACTCCAACGT+TGG | + | chr8_4:45207069-45207088 | Msa1327770:CDS | 50.0% | |
AGGATTCACTCCAACGTTGG+TGG | + | chr8_4:45207072-45207091 | Msa1327770:CDS | 50.0% | |
! | ATTCACTCCAACGTTGGTGG+AGG | + | chr8_4:45207075-45207094 | Msa1327770:CDS | 50.0% |
CTCTCCAAACGGTGACTTTG+AGG | + | chr8_4:45207111-45207130 | Msa1327770:CDS | 50.0% | |
! | CTTTTCCAAGATGCCATGGC+TGG | + | chr8_4:45207180-45207199 | Msa1327770:CDS | 50.0% |
GAAAATGGGATAGCCAGCCA+TGG | - | chr8_4:45207196-45207215 | None:intergenic | 50.0% | |
GAGGAACCAGTCCTTGAGAT+CGG | + | chr8_4:45207408-45207427 | Msa1327770:CDS | 50.0% | |
CCAATACCGATCTCAAGGAC+TGG | - | chr8_4:45207417-45207436 | None:intergenic | 50.0% | |
CCAGTCCTTGAGATCGGTAT+TGG | + | chr8_4:45207414-45207433 | Msa1327770:CDS | 50.0% | |
AGAGGCCAATACCGATCTCA+AGG | - | chr8_4:45207422-45207441 | None:intergenic | 50.0% | |
GAGCTTGAGGGAAAGACAGT+TGG | + | chr8_4:45207598-45207617 | Msa1327770:CDS | 50.0% | |
!! | GGTTTTGTCCTTGAGAGGCA+AGG | - | chr8_4:45207794-45207813 | None:intergenic | 50.0% |
!! | GCACAGGTTTTGTCCTTGAG+AGG | - | chr8_4:45207799-45207818 | None:intergenic | 50.0% |
GCTATCAGTTCTCCCTACCT+TGG | + | chr8_4:45207840-45207859 | Msa1327770:CDS | 50.0% | |
TCTACATCCTAATGCCGCTG+AGG | + | chr8_4:45207888-45207907 | Msa1327770:CDS | 50.0% | |
ATGATCCTCAATGGCCTCAG+CGG | - | chr8_4:45207905-45207924 | None:intergenic | 50.0% | |
CTGAGGCCATTGAGGATCAT+GGG | + | chr8_4:45207905-45207924 | Msa1327770:CDS | 50.0% | |
TGAGGCCATTGAGGATCATG+GGG | + | chr8_4:45207906-45207925 | Msa1327770:CDS | 50.0% | |
CGATGAAATAGCGAAGGCCA+AGG | + | chr8_4:45207969-45207988 | Msa1327770:CDS | 50.0% | |
TGAAATAGCGAAGGCCAAGG+AGG | + | chr8_4:45207972-45207991 | Msa1327770:CDS | 50.0% | |
TCTGACACCGGAACCTGAAA+TGG | - | chr8_4:45208194-45208213 | None:intergenic | 50.0% | |
! | GTTCCGGTGTCAGAGTTAGA+GGG | + | chr8_4:45208200-45208219 | Msa1327770:CDS | 50.0% |
! | TTCCGGTGTCAGAGTTAGAG+GGG | + | chr8_4:45208201-45208220 | Msa1327770:CDS | 50.0% |
TTCCCCTCTAACTCTGACAC+CGG | - | chr8_4:45208206-45208225 | None:intergenic | 50.0% | |
! | TGGAAGAAAAGCACGGCATG+GGG | - | chr8_4:45208264-45208283 | None:intergenic | 50.0% |
GAGCTTCTTTCGTGACAGTC+TGG | - | chr8_4:45208502-45208521 | None:intergenic | 50.0% | |
ACTGTCACGAAAGAAGCTCG+AGG | + | chr8_4:45208503-45208522 | Msa1327770:CDS | 50.0% | |
AAAGAAGCTCGAGGTCTGGT+TGG | + | chr8_4:45208512-45208531 | Msa1327770:CDS | 50.0% | |
AAGAAGCTCGAGGTCTGGTT+GGG | + | chr8_4:45208513-45208532 | Msa1327770:CDS | 50.0% | |
! | GAGGTCTGGTTGGGCTTTAT+GGG | + | chr8_4:45208522-45208541 | Msa1327770:CDS | 50.0% |
! | AGGTCTGGTTGGGCTTTATG+GGG | + | chr8_4:45208523-45208542 | Msa1327770:CDS | 50.0% |
AGGATGACATTGCAAAGGGG+TGG | + | chr8_4:45208597-45208616 | Msa1327770:CDS | 50.0% | |
GTTTCATGCGTCACCTTCTC+AGG | - | chr8_4:45208623-45208642 | None:intergenic | 50.0% | |
CTGTGATGGTTGTGAGGATG+AGG | + | chr8_4:45208685-45208704 | Msa1327770:CDS | 50.0% | |
TCTCCATCCAAATTGTGCGC+TGG | + | chr8_4:45208748-45208767 | Msa1327770:CDS | 50.0% | |
CTCCATCCAAATTGTGCGCT+GGG | + | chr8_4:45208749-45208768 | Msa1327770:CDS | 50.0% | |
TTGTCTCCCAGCGCACAATT+TGG | - | chr8_4:45208758-45208777 | None:intergenic | 50.0% | |
AATTGTGCGCTGGGAGACAA+AGG | + | chr8_4:45208758-45208777 | Msa1327770:CDS | 50.0% | |
TGTTTGGGAGTTTGGAGGGG+AGG | + | chr8_4:45206186-45206205 | Msa1327770:intron | 55.0% | |
GTTTGGGAGTTTGGAGGGGA+GGG | + | chr8_4:45206187-45206206 | Msa1327770:intron | 55.0% | |
TTTGGGAGTTTGGAGGGGAG+GGG | + | chr8_4:45206188-45206207 | Msa1327770:intron | 55.0% | |
!! | TTGGGAGGAGAGGGTTTTGG+AGG | + | chr8_4:45206261-45206280 | Msa1327770:intron | 55.0% |
GCCGAAAATATTGGGGGGTG+CGG | + | chr8_4:45206440-45206459 | Msa1327770:intron | 55.0% | |
CATGAGGATGGAGAGGAGAG+GGG | + | chr8_4:45206610-45206629 | Msa1327770:intron | 55.0% | |
ATGAGGATGGAGAGGAGAGG+GGG | + | chr8_4:45206611-45206630 | Msa1327770:intron | 55.0% | |
GGATCTCTATTGAGACCCCC+AGG | - | chr8_4:45206746-45206765 | None:intergenic | 55.0% | |
GTTTGGGAGTTTGGAGGGGA+AGG | - | chr8_4:45206187-45206206 | None:intergenic | 55.0% | |
TCGTAGACCTCCACCAACGT+TGG | - | chr8_4:45207085-45207104 | None:intergenic | 55.0% | |
GATAGCCAGCCATGGCATCT+TGG | - | chr8_4:45207188-45207207 | None:intergenic | 55.0% | |
CACAAAGTCACGGGAACGAG+AGG | - | chr8_4:45207440-45207459 | None:intergenic | 55.0% | |
TCAATGGCCTCAGCGGCATT+AGG | - | chr8_4:45207898-45207917 | None:intergenic | 55.0% | |
TAATGCCGCTGAGGCCATTG+AGG | + | chr8_4:45207897-45207916 | Msa1327770:CDS | 55.0% | |
GCTGAGGCCATTGAGGATCA+TGG | + | chr8_4:45207904-45207923 | Msa1327770:CDS | 55.0% | |
! | GGTTCCGGTGTCAGAGTTAG+AGG | + | chr8_4:45208199-45208218 | Msa1327770:intron | 55.0% |
!! | AGTGGGCTGAGAAGTAGAGG+AGG | - | chr8_4:45208235-45208254 | None:intergenic | 55.0% |
TCCTCTACTTCTCAGCCCAC+TGG | + | chr8_4:45208234-45208253 | Msa1327770:CDS | 55.0% | |
!! | ACCAGTGGGCTGAGAAGTAG+AGG | - | chr8_4:45208238-45208257 | None:intergenic | 55.0% |
! | GGAAGAAAAGCACGGCATGG+GGG | - | chr8_4:45208263-45208282 | None:intergenic | 55.0% |
ATCCCCAAGCTCGTGGCAAT+TGG | + | chr8_4:45208467-45208486 | Msa1327770:CDS | 55.0% | |
TCCCCAAGCTCGTGGCAATT+GGG | + | chr8_4:45208468-45208487 | Msa1327770:CDS | 55.0% | |
TTCGTGACAGTCTGGCCACT+TGG | - | chr8_4:45208494-45208513 | None:intergenic | 55.0% | |
CACGAAAGAAGCTCGAGGTC+TGG | + | chr8_4:45208508-45208527 | Msa1327770:CDS | 55.0% | |
CGAGGTCTGGTTGGGCTTTA+TGG | + | chr8_4:45208521-45208540 | Msa1327770:CDS | 55.0% | |
CTCCCAGCGCACAATTTGGA+TGG | - | chr8_4:45208754-45208773 | None:intergenic | 55.0% | |
TCTTCGCAACACCGGCGATC+AGG | + | chr8_4:45205807-45205826 | Msa1327770:CDS | 60.0% | |
GAGTTTGGAGGGGAAGGGAG+GGG | - | chr8_4:45206826-45206845 | None:intergenic | 60.0% | |
GGAGTTTGGAGGGGAAGGGA+GGG | - | chr8_4:45206827-45206846 | None:intergenic | 60.0% | |
TCATGGTGTGGTCCGTGTCG+AGG | + | chr8_4:45207052-45207071 | Msa1327770:CDS | 60.0% | |
CTTTGCGGGAATGCCATGGC+TGG | + | chr8_4:45208385-45208404 | Msa1327770:CDS | 60.0% | |
!! | CCAAAGGGAAGTGCCAGCCA+TGG | - | chr8_4:45208401-45208420 | None:intergenic | 60.0% |
CCATGGCTGGCACTTCCCTT+TGG | + | chr8_4:45208398-45208417 | Msa1327770:CDS | 60.0% | |
ATCTGGCATCCCCAAGCTCG+TGG | + | chr8_4:45208460-45208479 | Msa1327770:CDS | 60.0% | |
GCCCAATTGCCACGAGCTTG+GGG | - | chr8_4:45208472-45208491 | None:intergenic | 60.0% | |
GGCCCAATTGCCACGAGCTT+GGG | - | chr8_4:45208473-45208492 | None:intergenic | 60.0% | |
TGGCCCAATTGCCACGAGCT+TGG | - | chr8_4:45208474-45208493 | None:intergenic | 60.0% | |
CTCGTGGCAATTGGGCCAAG+TGG | + | chr8_4:45208476-45208495 | Msa1327770:CDS | 60.0% | |
TGCAAAGGGGTGGCCTGAGA+AGG | + | chr8_4:45208607-45208626 | Msa1327770:CDS | 60.0% | |
GGAGTTTGGAGGGGAGGGGA+GGG | + | chr8_4:45206192-45206211 | Msa1327770:intron | 65.0% | |
GAGTTTGGAGGGGAGGGGAG+GGG | + | chr8_4:45206193-45206212 | Msa1327770:intron | 65.0% | |
! | GGGAGGGGAGGGGAGGATTT+TGG | + | chr8_4:45206203-45206222 | Msa1327770:intron | 65.0% |
! | ATTGAGACCCCCAGGTGCCG+TGG | - | chr8_4:45206738-45206757 | None:intergenic | 65.0% |
! | AAGGGAGGGGAGGGCTTTGG+GGG | - | chr8_4:45206813-45206832 | None:intergenic | 65.0% |
GAAGGGAGGGGAGGGCTTTG+GGG | - | chr8_4:45206814-45206833 | None:intergenic | 65.0% | |
GGAAGGGAGGGGAGGGCTTT+GGG | - | chr8_4:45206815-45206834 | None:intergenic | 65.0% | |
TTGGAGGGGAAGGGAGGGGA+GGG | - | chr8_4:45206822-45206841 | None:intergenic | 65.0% | |
TTTGGAGGGGAAGGGAGGGG+AGG | - | chr8_4:45206823-45206842 | None:intergenic | 65.0% | |
GGGAGTTTGGAGGGGAAGGG+AGG | - | chr8_4:45206828-45206847 | None:intergenic | 65.0% | |
ACGGCATGGGGGACACCAGT+GGG | - | chr8_4:45208252-45208271 | None:intergenic | 65.0% | |
GGGAGTTTGGAGGGGAGGGG+AGG | + | chr8_4:45206191-45206210 | Msa1327770:intron | 70.0% | |
TTTGGAGGGGAGGGGAGGGG+AGG | + | chr8_4:45206196-45206215 | Msa1327770:intron | 70.0% | |
!! | TTAGGGGGTGCCACGGCACC+TGG | + | chr8_4:45206725-45206744 | Msa1327770:intron | 70.0% |
!! | TAGGGGGTGCCACGGCACCT+GGG | + | chr8_4:45206726-45206745 | Msa1327770:intron | 70.0% |
!! | AGGGGAGGGCTTTGGGGGGT+TGG | - | chr8_4:45206808-45206827 | None:intergenic | 70.0% |
!! | AGGGAGGGGAGGGCTTTGGG+GGG | - | chr8_4:45206812-45206831 | None:intergenic | 70.0% |
GGGAAGGGAGGGGAGGGCTT+TGG | - | chr8_4:45206816-45206835 | None:intergenic | 70.0% | |
CACGGCATGGGGGACACCAG+TGG | - | chr8_4:45208253-45208272 | None:intergenic | 70.0% | |
!! | AGGGGGTGCCACGGCACCTG+GGG | + | chr8_4:45206727-45206746 | Msa1327770:intron | 75.0% |
!!! | GGGGGTGCCACGGCACCTGG+GGG | + | chr8_4:45206728-45206747 | Msa1327770:intron | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_4 | gene | 45205604 | 45209050 | 45205604 | ID=Msa1327770;Name=Msa1327770 |
chr8_4 | mRNA | 45205604 | 45209050 | 45205604 | ID=Msa1327770-mRNA-1;Parent=Msa1327770;Name=Msa1327770-mRNA-1;_AED=0.07;_eAED=0.07;_QI=132|1|1|1|0.75|0.6|5|165|570 |
chr8_4 | exon | 45205604 | 45205828 | 45205604 | ID=Msa1327770-mRNA-1:exon:12663;Parent=Msa1327770-mRNA-1 |
chr8_4 | exon | 45207001 | 45207480 | 45207001 | ID=Msa1327770-mRNA-1:exon:12664;Parent=Msa1327770-mRNA-1 |
chr8_4 | exon | 45207586 | 45208065 | 45207586 | ID=Msa1327770-mRNA-1:exon:12665;Parent=Msa1327770-mRNA-1 |
chr8_4 | exon | 45208200 | 45208969 | 45208200 | ID=Msa1327770-mRNA-1:exon:12666;Parent=Msa1327770-mRNA-1 |
chr8_4 | exon | 45208996 | 45209050 | 45208996 | ID=Msa1327770-mRNA-1:exon:12667;Parent=Msa1327770-mRNA-1 |
chr8_4 | five_prime_UTR | 45205604 | 45205735 | 45205604 | ID=Msa1327770-mRNA-1:five_prime_utr;Parent=Msa1327770-mRNA-1 |
chr8_4 | CDS | 45205736 | 45205828 | 45205736 | ID=Msa1327770-mRNA-1:cds;Parent=Msa1327770-mRNA-1 |
chr8_4 | CDS | 45207001 | 45207480 | 45207001 | ID=Msa1327770-mRNA-1:cds;Parent=Msa1327770-mRNA-1 |
chr8_4 | CDS | 45207586 | 45208065 | 45207586 | ID=Msa1327770-mRNA-1:cds;Parent=Msa1327770-mRNA-1 |
chr8_4 | CDS | 45208200 | 45208859 | 45208200 | ID=Msa1327770-mRNA-1:cds;Parent=Msa1327770-mRNA-1 |
chr8_4 | three_prime_UTR | 45208860 | 45208969 | 45208860 | ID=Msa1327770-mRNA-1:three_prime_utr;Parent=Msa1327770-mRNA-1 |
chr8_4 | three_prime_UTR | 45208996 | 45209050 | 45208996 | ID=Msa1327770-mRNA-1:three_prime_utr;Parent=Msa1327770-mRNA-1 |
Gene Sequence |
Protein sequence |