AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1327770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1327770 MtrunA17_Chr8g0365761 94.035 570 34 0 1 570 1 570 0.0 1106
Msa1327770 MtrunA17_Chr8g0365791 86.570 484 65 0 1 484 1 484 0.0 868
Msa1327770 MtrunA17_Chr8g0365791 35.629 334 212 3 9 340 169 501 8.16e-62 212
Msa1327770 MtrunA17_Chr8g0365791 34.254 181 116 2 328 507 8 186 1.87e-33 134
Msa1327770 MtrunA17_Chr3g0139141 39.178 365 221 1 175 539 19 382 1.11e-96 300
Msa1327770 MtrunA17_Chr3g0139141 34.650 329 210 5 9 335 13 338 2.46e-61 207
Msa1327770 MtrunA17_Chr3g0143311 41.026 390 212 6 175 546 40 429 4.34e-95 297
Msa1327770 MtrunA17_Chr3g0143311 42.405 316 167 4 15 315 40 355 1.48e-80 259
Msa1327770 MtrunA17_Chr3g0143311 45.161 155 72 4 14 156 203 356 2.57e-34 135
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1327770 AT1G60420.1 62.456 570 208 3 6 570 10 578 0.0 749
Msa1327770 AT4G31240.1 38.753 369 225 1 172 540 17 384 6.52e-94 293
Msa1327770 AT4G31240.1 34.177 316 204 4 11 324 16 329 3.99e-62 210
Msa1327770 AT4G31240.2 38.753 369 225 1 172 540 17 384 6.52e-94 293
Msa1327770 AT4G31240.2 34.177 316 204 4 11 324 16 329 3.99e-62 210

Find 161 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAGGTCTGGTTGGGCTTTA+TGG 0.070923 8_4:+45208521 Msa1327770:CDS
CCTTTGCAATGTCATCCTTT+TGG 0.167653 8_4:-45208592 None:intergenic
CTCCCTACCTTGGTTGTTAT+TGG 0.188184 8_4:+45207850 Msa1327770:CDS
TATGAAATAATTTGAATCTT+TGG 0.191450 8_4:+45208939 Msa1327770:three_prime_UTR
GTTCACATTATCCGTGTTTA+TGG 0.195004 8_4:+45207319 Msa1327770:CDS
TGACTCTTCTTCATTATCTA+AGG 0.210482 8_4:-45207734 None:intergenic
TCCCGCAAAGAATTCATTAA+AGG 0.224770 8_4:-45208372 None:intergenic
AGATATAACAAGCAGATTTC+AGG 0.242247 8_4:-45208855 None:intergenic
ATCACAAACCCATCCATCTT+TGG 0.250320 8_4:-45208813 None:intergenic
GAGGTCTGGTTGGGCTTTAT+GGG 0.250764 8_4:+45208522 Msa1327770:CDS
ATCCCCAAGCTCGTGGCAAT+TGG 0.257472 8_4:+45208467 Msa1327770:CDS
TGTTATATCTTAGTGATTAC+TGG 0.272154 8_4:+45208868 Msa1327770:three_prime_UTR
GGCCCAATTGCCACGAGCTT+GGG 0.272891 8_4:-45208470 None:intergenic
CGTGTCTCTGAATCAGAAAA+TGG 0.283652 8_4:-45207208 None:intergenic
AAAAGCCTCATCATCTTTAT+CGG 0.320709 8_4:-45207149 None:intergenic
ACAGAATCCGCCATTGTTCC+TGG 0.331487 8_4:-45205727 None:intergenic
AACAAGGACGTCTTATTTAT+AGG 0.337922 8_4:-45205657 None:intergenic
TTGTCTCCCAGCGCACAATT+TGG 0.341919 8_4:-45208755 None:intergenic
TCTATTTAATCAAAAGCTTA+AGG 0.343684 8_4:+45207657 Msa1327770:CDS
TGGTATGCCTCAATGAGTTT+TGG 0.350245 8_4:-45208281 None:intergenic
TTTGGGCTTCTCTTCTTCCT+TGG 0.354126 8_4:-45208795 None:intergenic
TCAAACACTTGAGTCAGTTT+TGG 0.355313 8_4:+45207999 Msa1327770:CDS
AACAAGCAGATTTCAGGCTT+TGG 0.367079 8_4:-45208849 None:intergenic
GGAGACAAAGGAAGCATAAA+TGG 0.378642 8_4:+45208770 Msa1327770:CDS
TGGCCCAATTGCCACGAGCT+TGG 0.380921 8_4:-45208471 None:intergenic
AGTCGCAAATTCAAGGTATC+TGG 0.382318 8_4:+45208443 Msa1327770:CDS
CCATGGCTGGCACTTCCCTT+TGG 0.383022 8_4:+45208398 Msa1327770:CDS
GGTTCCGGTGTCAGAGTTAG+AGG 0.386836 8_4:+45208199 Msa1327770:intron
CTCTCCAAACGGTGACTTTG+AGG 0.395188 8_4:+45207111 Msa1327770:CDS
TGAGGCATACCATAAGATTA+AGG 0.395339 8_4:+45208292 Msa1327770:CDS
TCCTTTAATGAATTCTTTGC+GGG 0.398362 8_4:+45208371 Msa1327770:CDS
TCACAAACCCATCCATCTTT+GGG 0.399851 8_4:-45208812 None:intergenic
GTGAGGATGAGGGAGATAAT+TGG 0.409851 8_4:+45208696 Msa1327770:CDS
GATGAACTGTTTCATGTAAA+CGG 0.411174 8_4:+45207241 Msa1327770:CDS
CTTGCATTGCTTGATGAAGC+TGG 0.412538 8_4:+45207274 Msa1327770:CDS
TCAATGGCCTCAGCGGCATT+AGG 0.415477 8_4:-45207895 None:intergenic
TCTTCGCAACACCGGCGATC+AGG 0.422776 8_4:+45205807 Msa1327770:CDS
GTTTCATGCGTCACCTTCTC+AGG 0.435152 8_4:-45208620 None:intergenic
GGAAAAGTTATTACTGAAGA+TGG 0.435795 8_4:+45207295 Msa1327770:CDS
ATCCTTTAATGAATTCTTTG+CGG 0.438767 8_4:+45208370 Msa1327770:CDS
GCTGAGGCCATTGAGGATCA+TGG 0.439830 8_4:+45207904 Msa1327770:CDS
GAGCTTCTTTCGTGACAGTC+TGG 0.442158 8_4:-45208499 None:intergenic
AATCTTGTGCACGAGTCATC+AGG 0.445057 8_4:+45209000 Msa1327770:three_prime_UTR
CGAAGAAGAAAGTCTCTATC+AGG 0.446671 8_4:-45205790 None:intergenic
CCAGTCCTTGAGATCGGTAT+TGG 0.447975 8_4:+45207414 Msa1327770:CDS
CGCAATGTTTATTGCTGTGA+TGG 0.449040 8_4:+45208671 Msa1327770:CDS
TCCCCAAGCTCGTGGCAATT+GGG 0.449928 8_4:+45208468 Msa1327770:CDS
AGCTTGAAGGGAAAGAAACT+TGG 0.454943 8_4:+45207013 Msa1327770:CDS
TCCTCTACTTCTCAGCCCAC+TGG 0.456326 8_4:+45208234 Msa1327770:CDS
TTCGTGACAGTCTGGCCACT+TGG 0.457604 8_4:-45208491 None:intergenic
CTGAGGCCATTGAGGATCAT+GGG 0.457780 8_4:+45207905 Msa1327770:CDS
CTGTGATGGTTGTGAGGATG+AGG 0.458196 8_4:+45208685 Msa1327770:CDS
TTTCCCTCAAGCTCAGAGAT+AGG 0.462545 8_4:-45207589 None:intergenic
CACGAAAGAAGCTCGAGGTC+TGG 0.464365 8_4:+45208508 Msa1327770:CDS
TTGGTTGTTATTGGAACAGA+TGG 0.466603 8_4:+45207859 Msa1327770:CDS
CTCCATCCAAATTGTGCGCT+GGG 0.466966 8_4:+45208749 Msa1327770:CDS
TTGGTTATCCTTGCCTCTCA+AGG 0.468978 8_4:+45207783 Msa1327770:CDS
GCTATCAGTTCTCCCTACCT+TGG 0.470710 8_4:+45207840 Msa1327770:CDS
CTTTGCGGGAATGCCATGGC+TGG 0.471268 8_4:+45208385 Msa1327770:CDS
GTTAAAATTGATAGCTTGAA+GGG 0.473772 8_4:+45207001 Msa1327770:CDS
AAGAAGCTCGAGGTCTGGTT+GGG 0.474272 8_4:+45208513 Msa1327770:CDS
ATTCTTGAGTCGCAAATTCA+AGG 0.476921 8_4:+45208436 Msa1327770:CDS
TTGGAAGAAAAGCACGGCAT+GGG 0.477928 8_4:-45208262 None:intergenic
AAGTGTTTGAGATGCCTCCT+TGG 0.478467 8_4:-45207986 None:intergenic
ACAACCTCAAAGTCACCGTT+TGG 0.479366 8_4:-45207115 None:intergenic
AAAAGAAATAGAGGCCCAAA+AGG 0.482783 8_4:+45208577 Msa1327770:CDS
TTTATTCTCTCTTCAGTGAA+AGG 0.486902 8_4:-45208557 None:intergenic
AGAGAGAATAAAAGAAATAG+AGG 0.489082 8_4:+45208568 Msa1327770:CDS
GAGCTTGAGGGAAAGACAGT+TGG 0.489851 8_4:+45207598 Msa1327770:CDS
GGTTAAAATTGATAGCTTGA+AGG 0.491854 8_4:+45207000 Msa1327770:intron
TGAACCCTTTCTGATGTGAA+AGG 0.494644 8_4:-45207355 None:intergenic
CTAGCTTACTTCATTTCCAT+CGG 0.501319 8_4:-45207467 None:intergenic
AAAGAAGCTCGAGGTCTGGT+TGG 0.502824 8_4:+45208512 Msa1327770:CDS
GACTTTCTTCTTCGCAACAC+CGG 0.503020 8_4:+45205799 Msa1327770:CDS
GATAGCCAGCCATGGCATCT+TGG 0.503945 8_4:-45207185 None:intergenic
GAACCCTTTCTGATGTGAAA+GGG 0.508847 8_4:-45207354 None:intergenic
CTCCCAGCGCACAATTTGGA+TGG 0.511436 8_4:-45208751 None:intergenic
AAACAATGACGCACTTGAAG+TGG 0.514226 8_4:+45208319 Msa1327770:CDS
ATACCTATCTCTGAGCTTGA+GGG 0.516850 8_4:+45207586 Msa1327770:CDS
TCTTTAGTCACTCACTCTCC+AGG 0.517949 8_4:+45205709 Msa1327770:five_prime_UTR
CAAAAGGATGACATTGCAAA+GGG 0.524480 8_4:+45208593 Msa1327770:CDS
GATACCTATCTCTGAGCTTG+AGG 0.524940 8_4:+45207585 Msa1327770:intron
TCTCCATCCAAATTGTGCGC+TGG 0.526783 8_4:+45208748 Msa1327770:CDS
GATACCCTTTCACATCAGAA+AGG 0.527989 8_4:+45207350 Msa1327770:CDS
GAAGAAGAGAAGCCCAAAGA+TGG 0.528620 8_4:+45208800 Msa1327770:CDS
CATTGACAAAGATGCGAAGA+AGG 0.529371 8_4:+45208044 Msa1327770:CDS
ACCAGTGGGCTGAGAAGTAG+AGG 0.529711 8_4:-45208235 None:intergenic
TACGATGAACTCTCTCCAAA+CGG 0.530988 8_4:+45207100 Msa1327770:CDS
GACTCTTCTTCATTATCTAA+GGG 0.532377 8_4:-45207733 None:intergenic
AAGAATTAGAAAGTGTGCCT+TGG 0.535581 8_4:+45207764 Msa1327770:CDS
ATACCCTTTCACATCAGAAA+GGG 0.537407 8_4:+45207351 Msa1327770:CDS
TGCAAAGGGGTGGCCTGAGA+AGG 0.540645 8_4:+45208607 Msa1327770:CDS
GTGTCTCTGAATCAGAAAAT+GGG 0.541094 8_4:-45207207 None:intergenic
GAACACAGACTAGGCGAACA+AGG 0.542322 8_4:-45205673 None:intergenic
ATCAAGAAGAGGAAGCTAAG+AGG 0.542413 8_4:+45207389 Msa1327770:CDS
ATCCGTGTTTATGGAGCTGA+AGG 0.542459 8_4:+45207328 Msa1327770:CDS
GCCCAATTGCCACGAGCTTG+GGG 0.546174 8_4:-45208469 None:intergenic
GTTCCAATAACAACCAAGGT+AGG 0.546605 8_4:-45207853 None:intergenic
AAGAGAAGCCCAAAGATGGA+TGG 0.550982 8_4:+45208804 Msa1327770:CDS
AGAGTTGAAAGATCAAGAAG+AGG 0.554619 8_4:+45207378 Msa1327770:CDS
ATCAACCCCATGATCCTCAA+TGG 0.561806 8_4:-45207911 None:intergenic
GGACGTCTTATTTATAGGAG+TGG 0.562679 8_4:-45205652 None:intergenic
GTATTGAATTAGTTTCGCAC+AGG 0.568373 8_4:-45207812 None:intergenic
TTCCCCTCTAACTCTGACAC+CGG 0.568510 8_4:-45208203 None:intergenic
AGGTCTGGTTGGGCTTTATG+GGG 0.570437 8_4:+45208523 Msa1327770:CDS
TAATGCCGCTGAGGCCATTG+AGG 0.572119 8_4:+45207897 Msa1327770:CDS
TCATGGTGTGGTCCGTGTCG+AGG 0.572429 8_4:+45207052 Msa1327770:CDS
TTACATGAAACAGTTCATCA+AGG 0.576778 8_4:-45207237 None:intergenic
AGAGAAGCCCAAAGATGGAT+GGG 0.577163 8_4:+45208805 Msa1327770:CDS
AATTGTGCGCTGGGAGACAA+AGG 0.578428 8_4:+45208758 Msa1327770:CDS
TTTGGAAGAAAAGCACGGCA+TGG 0.578921 8_4:-45208263 None:intergenic
TGGAAGAAAAGCACGGCATG+GGG 0.579522 8_4:-45208261 None:intergenic
ATTCACTCCAACGTTGGTGG+AGG 0.582019 8_4:+45207075 Msa1327770:CDS
CGATGAAATAGCGAAGGCCA+AGG 0.585479 8_4:+45207969 Msa1327770:CDS
CCAAAAGGATGACATTGCAA+AGG 0.586191 8_4:+45208592 Msa1327770:CDS
CTCGTGGCAATTGGGCCAAG+TGG 0.588439 8_4:+45208476 Msa1327770:CDS
ATTTAATCAAAAGCTTAAGG+AGG 0.590041 8_4:+45207660 Msa1327770:CDS
TTCCAATAACAACCAAGGTA+GGG 0.592147 8_4:-45207852 None:intergenic
TCGAGGATTCACTCCAACGT+TGG 0.595933 8_4:+45207069 Msa1327770:CDS
CCAATACCGATCTCAAGGAC+TGG 0.597503 8_4:-45207414 None:intergenic
GAGGAACCAGTCCTTGAGAT+CGG 0.598222 8_4:+45207408 Msa1327770:CDS
CACAAAGTCACGGGAACGAG+AGG 0.599551 8_4:-45207437 None:intergenic
GACTTTGTGATATCATCCGA+TGG 0.599839 8_4:+45207451 Msa1327770:CDS
AGGAAGCATAAATGGTGCCA+AGG 0.600015 8_4:+45208778 Msa1327770:CDS
GTTCCGGTGTCAGAGTTAGA+GGG 0.603592 8_4:+45208200 Msa1327770:CDS
CACTCACTCTCCAGGAACAA+TGG 0.603918 8_4:+45205717 Msa1327770:exon
AGGATTCACTCCAACGTTGG+TGG 0.604343 8_4:+45207072 Msa1327770:CDS
AAAGATGGATGGGTTTGTGA+TGG 0.605439 8_4:+45208815 Msa1327770:CDS
AGAGGCCAATACCGATCTCA+AGG 0.608936 8_4:-45207419 None:intergenic
GGATGATATCACAAAGTCAC+GGG 0.610022 8_4:-45207446 None:intergenic
AAACAAGAAGAACACAGACT+AGG 0.610971 8_4:-45205682 None:intergenic
CGGATGATATCACAAAGTCA+CGG 0.612088 8_4:-45207447 None:intergenic
TGTGATGGTTGTGAGGATGA+GGG 0.617819 8_4:+45208686 Msa1327770:CDS
CTCAGCCGATAAAGATGATG+AGG 0.619000 8_4:+45207144 Msa1327770:CDS
TCATCAAGCAATGCAAGATG+AGG 0.620375 8_4:-45207268 None:intergenic
TTATTGCTGTGATGGTTGTG+AGG 0.621592 8_4:+45208679 Msa1327770:CDS
CCAAAGGGAAGTGCCAGCCA+TGG 0.621888 8_4:-45208398 None:intergenic
ATGATCCTCAATGGCCTCAG+CGG 0.626422 8_4:-45207902 None:intergenic
AATTCTTTGCGGGAATGCCA+TGG 0.628513 8_4:+45208381 Msa1327770:CDS
ATCTGTTCCAATAACAACCA+AGG 0.629095 8_4:-45207857 None:intergenic
CAGTTGTAGTACCTGATCGC+CGG 0.631584 8_4:-45205818 None:intergenic
AGGATGACATTGCAAAGGGG+TGG 0.634262 8_4:+45208597 Msa1327770:CDS
ATCCTTCAGCTCCATAAACA+CGG 0.636117 8_4:-45207330 None:intergenic
TGGTTGTTATTGGAACAGAT+GGG 0.643959 8_4:+45207860 Msa1327770:CDS
ATCTGGCATCCCCAAGCTCG+TGG 0.647534 8_4:+45208460 Msa1327770:CDS
TTCCGGTGTCAGAGTTAGAG+GGG 0.651542 8_4:+45208201 Msa1327770:CDS
TGAACTCGATGAAATAGCGA+AGG 0.654732 8_4:+45207963 Msa1327770:CDS
AGTGGGCTGAGAAGTAGAGG+AGG 0.655615 8_4:-45208232 None:intergenic
TGAGGCCATTGAGGATCATG+GGG 0.663531 8_4:+45207906 Msa1327770:CDS
GAAAATGGGATAGCCAGCCA+TGG 0.663538 8_4:-45207193 None:intergenic
ATTTATAGGAGTGGAAAGCG+TGG 0.675779 8_4:-45205643 None:intergenic
TCTACATCCTAATGCCGCTG+AGG 0.677477 8_4:+45207888 Msa1327770:CDS
TCACTCTCCAGGAACAATGG+CGG 0.684799 8_4:+45205720 Msa1327770:exon
ACTGTCACGAAAGAAGCTCG+AGG 0.699376 8_4:+45208503 Msa1327770:CDS
TATAGGAGTGGAAAGCGTGG+AGG 0.701516 8_4:-45205640 None:intergenic
TTGAGAGGCAAGGATAACCA+AGG 0.706344 8_4:-45207781 None:intergenic
TCGTAGACCTCCACCAACGT+TGG 0.707472 8_4:-45207082 None:intergenic
TGAAATAGCGAAGGCCAAGG+AGG 0.711233 8_4:+45207972 Msa1327770:CDS
GGAAGAAAAGCACGGCATGG+GGG 0.711566 8_4:-45208260 None:intergenic
AAAAGGATGACATTGCAAAG+GGG 0.737416 8_4:+45208594 Msa1327770:CDS
GTTGGAGTGAATCCTCGACA+CGG 0.764812 8_4:-45207064 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAAAAAAATTATTAG+GGG + chr8_4:45206709-45206728 Msa1327770:intron 10.0%
!! AAAAAAAAAAAATTATTAGG+GGG + chr8_4:45206710-45206729 Msa1327770:intron 10.0%
!!! ATTTTATAACATAAATTTAC+TGG + chr8_4:45208073-45208092 Msa1327770:intron 10.0%
!! TTAATAACAAATTAAAAAGA+GGG - chr8_4:45208126-45208145 None:intergenic 10.0%
!! ATTAATAACAAATTAAAAAG+AGG - chr8_4:45208127-45208146 None:intergenic 10.0%
!!! AAACAAAACTATACAATTTT+TGG + chr8_4:45205963-45205982 Msa1327770:intron 15.0%
!! ATGTTGGTATATAATATATT+TGG - chr8_4:45206565-45206584 None:intergenic 15.0%
!! TATGAAATAATTTGAATCTT+TGG + chr8_4:45208939-45208958 Msa1327770:three_prime_UTR 15.0%
!! TTCATAAAACACAACAAAAA+AGG - chr8_4:45205872-45205891 None:intergenic 20.0%
!!! ATAAATTGGATTTGAAATGA+GGG - chr8_4:45206315-45206334 None:intergenic 20.0%
!!! TATAAATTGGATTTGAAATG+AGG - chr8_4:45206316-45206335 None:intergenic 20.0%
!! TTCTTTCAAAAAAGTGAATT+CGG + chr8_4:45206406-45206425 Msa1327770:intron 20.0%
!! GTTGGAAATATATAGAAAAA+TGG - chr8_4:45206790-45206809 None:intergenic 20.0%
!!! TCTCATATTTTGAAATTTAC+AGG + chr8_4:45206979-45206998 Msa1327770:intron 20.0%
!! TCTATTTAATCAAAAGCTTA+AGG + chr8_4:45207657-45207676 Msa1327770:CDS 20.0%
! TTAATTGCATATATGCAACA+AGG - chr8_4:45206054-45206073 None:intergenic 25.0%
! TTGTTGCATATATGCAATTA+AGG + chr8_4:45206053-45206072 Msa1327770:intron 25.0%
! TGTTGCATATATGCAATTAA+GGG + chr8_4:45206054-45206073 Msa1327770:intron 25.0%
!! TAAATTGGATTTGAAATGAG+GGG - chr8_4:45206314-45206333 None:intergenic 25.0%
!!! CTATTGTGGTGATATTTTTT+TGG - chr8_4:45206521-45206540 None:intergenic 25.0%
!! TGAAAACTTAGACTTTGTTT+GGG - chr8_4:45206848-45206867 None:intergenic 25.0%
! ATGAAAACTTAGACTTTGTT+TGG - chr8_4:45206849-45206868 None:intergenic 25.0%
! TATATGACAGTTATTTGAAG+TGG + chr8_4:45206907-45206926 Msa1327770:intron 25.0%
!! GTTAAAATTGATAGCTTGAA+GGG + chr8_4:45207001-45207020 Msa1327770:CDS 25.0%
! TTAACTCAGTATGATATAGT+AGG + chr8_4:45207494-45207513 Msa1327770:intron 25.0%
! AACAACCAGATAATAACAAA+AGG - chr8_4:45207522-45207541 None:intergenic 25.0%
!!! TTTGTTATTATCTGGTTGTT+TGG + chr8_4:45207522-45207541 Msa1327770:intron 25.0%
!!! TTTTGATTAAATAGAGTGCA+TGG - chr8_4:45207652-45207671 None:intergenic 25.0%
! ATTTAATCAAAAGCTTAAGG+AGG + chr8_4:45207660-45207679 Msa1327770:CDS 25.0%
! AATTAAAAAGAGGGAATGAT+GGG - chr8_4:45208117-45208136 None:intergenic 25.0%
! AAATTAAAAAGAGGGAATGA+TGG - chr8_4:45208118-45208137 None:intergenic 25.0%
! ATCCTTTAATGAATTCTTTG+CGG + chr8_4:45208370-45208389 Msa1327770:CDS 25.0%
! AGAGAGAATAAAAGAAATAG+AGG + chr8_4:45208568-45208587 Msa1327770:CDS 25.0%
! TGTTATATCTTAGTGATTAC+TGG + chr8_4:45208868-45208887 Msa1327770:three_prime_UTR 25.0%
! AATCTTTGGATATTGTGATA+TGG + chr8_4:45208953-45208972 Msa1327770:intron 25.0%
!! AGGAGAATAACCATAATTTT+TGG - chr8_4:45209026-45209045 None:intergenic 25.0%
!! AACAAGGACGTCTTATTTAT+AGG - chr8_4:45205660-45205679 None:intergenic 30.0%
AAAAAGGAGAAGAGAAGTAA+CGG - chr8_4:45205856-45205875 None:intergenic 30.0%
! ATGTATTCTATCAGAAGTGT+CGG - chr8_4:45206095-45206114 None:intergenic 30.0%
TGGAAGAAATAGAAGACATT+GGG + chr8_4:45206243-45206262 Msa1327770:intron 30.0%
! AAATTGGATTTGAAATGAGG+GGG - chr8_4:45206313-45206332 None:intergenic 30.0%
TTTCAAAAAAGTGAATTCGG+TGG + chr8_4:45206409-45206428 Msa1327770:intron 30.0%
!! TGTGAACTAAAAGTGTCTTA+GGG + chr8_4:45206663-45206682 Msa1327770:intron 30.0%
ATGGACAAAAAATTCACACA+GGG - chr8_4:45206771-45206790 None:intergenic 30.0%
AATGGACAAAAAATTCACAC+AGG - chr8_4:45206772-45206791 None:intergenic 30.0%
! ACAAAGTCTAAGTTTTCATG+TGG + chr8_4:45206850-45206869 Msa1327770:intron 30.0%
TTTATTTGTACTTGTACCGA+TGG + chr8_4:45206934-45206953 Msa1327770:intron 30.0%
! GGTTAAAATTGATAGCTTGA+AGG + chr8_4:45207000-45207019 Msa1327770:intron 30.0%
!! GTTTCTATTTTTCAGCATCA+TGG + chr8_4:45207035-45207054 Msa1327770:CDS 30.0%
AAAAGCCTCATCATCTTTAT+CGG - chr8_4:45207152-45207171 None:intergenic 30.0%
TTACATGAAACAGTTCATCA+AGG - chr8_4:45207240-45207259 None:intergenic 30.0%
GATGAACTGTTTCATGTAAA+CGG + chr8_4:45207241-45207260 Msa1327770:CDS 30.0%
GGAAAAGTTATTACTGAAGA+TGG + chr8_4:45207295-45207314 Msa1327770:CDS 30.0%
!!! AGGTTCCTTTTGTTATTATC+TGG + chr8_4:45207514-45207533 Msa1327770:intron 30.0%
TACAAAAAGCTGAAGGAAAA+TGG + chr8_4:45207685-45207704 Msa1327770:CDS 30.0%
ACAAAAAGCTGAAGGAAAAT+GGG + chr8_4:45207686-45207705 Msa1327770:CDS 30.0%
GACTCTTCTTCATTATCTAA+GGG - chr8_4:45207736-45207755 None:intergenic 30.0%
TGACTCTTCTTCATTATCTA+AGG - chr8_4:45207737-45207756 None:intergenic 30.0%
ATTAAAAAGAGGGAATGATG+GGG - chr8_4:45208116-45208135 None:intergenic 30.0%
TTAGCATTTATCTCCATTTC+AGG + chr8_4:45208178-45208197 Msa1327770:intron 30.0%
! TTTTCTTCCAAAACTCATTG+AGG + chr8_4:45208274-45208293 Msa1327770:CDS 30.0%
! TGTTTTGTGCCTTAATCTTA+TGG - chr8_4:45208304-45208323 None:intergenic 30.0%
TCCTTTAATGAATTCTTTGC+GGG + chr8_4:45208371-45208390 Msa1327770:CDS 30.0%
TTTATTCTCTCTTCAGTGAA+AGG - chr8_4:45208560-45208579 None:intergenic 30.0%
AGATATAACAAGCAGATTTC+AGG - chr8_4:45208858-45208877 None:intergenic 30.0%
AAACAAGAAGAACACAGACT+AGG - chr8_4:45205685-45205704 None:intergenic 35.0%
GACACTTCTGATAGAATACA+TGG + chr8_4:45206094-45206113 Msa1327770:intron 35.0%
ACTTCTGATAGAATACATGG+TGG + chr8_4:45206097-45206116 Msa1327770:intron 35.0%
!! ATACATGGTGGATTTAGTAG+TGG + chr8_4:45206109-45206128 Msa1327770:intron 35.0%
!! AGTTGACTAAGGCTTTGTTT+GGG + chr8_4:45206171-45206190 Msa1327770:intron 35.0%
GTGGAAGAAATAGAAGACAT+TGG + chr8_4:45206242-45206261 Msa1327770:intron 35.0%
AAGAAATAGAAGACATTGGG+AGG + chr8_4:45206246-45206265 Msa1327770:intron 35.0%
!! GTGTGAACTAAAAGTGTCTT+AGG + chr8_4:45206662-45206681 Msa1327770:intron 35.0%
!! GTGAACTAAAAGTGTCTTAG+GGG + chr8_4:45206664-45206683 Msa1327770:intron 35.0%
TGGACAAAAAATTCACACAG+GGG - chr8_4:45206770-45206789 None:intergenic 35.0%
! TTAGACTTTGTTTGGGAGTT+TGG - chr8_4:45206841-45206860 None:intergenic 35.0%
! GTTTTTCTTACTTGACACTG+TGG + chr8_4:45206884-45206903 Msa1327770:intron 35.0%
ACCACAACACAATATTCCAT+CGG - chr8_4:45206953-45206972 None:intergenic 35.0%
!! TATTTTTCAGCATCATGGTG+TGG + chr8_4:45207040-45207059 Msa1327770:CDS 35.0%
GTGTCTCTGAATCAGAAAAT+GGG - chr8_4:45207210-45207229 None:intergenic 35.0%
GTTCACATTATCCGTGTTTA+TGG + chr8_4:45207319-45207338 Msa1327770:CDS 35.0%
ATACCCTTTCACATCAGAAA+GGG + chr8_4:45207351-45207370 Msa1327770:CDS 35.0%
AGAGTTGAAAGATCAAGAAG+AGG + chr8_4:45207378-45207397 Msa1327770:CDS 35.0%
CTAGCTTACTTCATTTCCAT+CGG - chr8_4:45207470-45207489 None:intergenic 35.0%
CATGAAAGGAAAAGTGAGAT+TGG - chr8_4:45207556-45207575 None:intergenic 35.0%
CAAAAAGCTGAAGGAAAATG+GGG + chr8_4:45207687-45207706 Msa1327770:CDS 35.0%
! AAGAATTAGAAAGTGTGCCT+TGG + chr8_4:45207764-45207783 Msa1327770:CDS 35.0%
! GTATTGAATTAGTTTCGCAC+AGG - chr8_4:45207815-45207834 None:intergenic 35.0%
TTCCAATAACAACCAAGGTA+GGG - chr8_4:45207855-45207874 None:intergenic 35.0%
ATCTGTTCCAATAACAACCA+AGG - chr8_4:45207860-45207879 None:intergenic 35.0%
! TTGGTTGTTATTGGAACAGA+TGG + chr8_4:45207859-45207878 Msa1327770:CDS 35.0%
! TGGTTGTTATTGGAACAGAT+GGG + chr8_4:45207860-45207879 Msa1327770:CDS 35.0%
!! GAAAACTTTTCAGGAGTGAA+TGG - chr8_4:45207943-45207962 None:intergenic 35.0%
! TCGAGTTCAGAAAACTTTTC+AGG - chr8_4:45207952-45207971 None:intergenic 35.0%
! TCAAACACTTGAGTCAGTTT+TGG + chr8_4:45207999-45208018 Msa1327770:CDS 35.0%
TTAAAAAGAGGGAATGATGG+GGG - chr8_4:45208115-45208134 None:intergenic 35.0%
!! TTTATCTCCATTTCAGGTTC+CGG + chr8_4:45208184-45208203 Msa1327770:intron 35.0%
!!! TGAGTTTTGGAAGAAAAGCA+CGG - chr8_4:45208271-45208290 None:intergenic 35.0%
TGAGGCATACCATAAGATTA+AGG + chr8_4:45208292-45208311 Msa1327770:CDS 35.0%
TCCCGCAAAGAATTCATTAA+AGG - chr8_4:45208375-45208394 None:intergenic 35.0%
! TCTTTTCTTGTGTCACCAAA+GGG - chr8_4:45208416-45208435 None:intergenic 35.0%
! TTCTTTTCTTGTGTCACCAA+AGG - chr8_4:45208417-45208436 None:intergenic 35.0%
ATTCTTGAGTCGCAAATTCA+AGG + chr8_4:45208436-45208455 Msa1327770:CDS 35.0%
AAAAGAAATAGAGGCCCAAA+AGG + chr8_4:45208577-45208596 Msa1327770:CDS 35.0%
! CTTTGCAATGTCATCCTTTT+GGG - chr8_4:45208594-45208613 None:intergenic 35.0%
CAAAAGGATGACATTGCAAA+GGG + chr8_4:45208593-45208612 Msa1327770:CDS 35.0%
AAAAGGATGACATTGCAAAG+GGG + chr8_4:45208594-45208613 Msa1327770:CDS 35.0%
AGTCATCAGGCCAAAAATTA+TGG + chr8_4:45209013-45209032 Msa1327770:three_prime_UTR 35.0%
ATTTATAGGAGTGGAAAGCG+TGG - chr8_4:45205646-45205665 None:intergenic 40.0%
!! GGACGTCTTATTTATAGGAG+TGG - chr8_4:45205655-45205674 None:intergenic 40.0%
CGAAGAAGAAAGTCTCTATC+AGG - chr8_4:45205793-45205812 None:intergenic 40.0%
! GAAGAGAAGTAACGGAGTTA+CGG - chr8_4:45205848-45205867 None:intergenic 40.0%
ACATTGACCAGAGTTGACTA+AGG + chr8_4:45206160-45206179 Msa1327770:intron 40.0%
AACAAAGCCTTAGTCAACTC+TGG - chr8_4:45206170-45206189 None:intergenic 40.0%
!! GAGTTGACTAAGGCTTTGTT+TGG + chr8_4:45206170-45206189 Msa1327770:intron 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG + chr8_4:45206178-45206197 Msa1327770:intron 40.0%
!! GGAGGATTTTGGAAAAAGGA+AGG + chr8_4:45206214-45206233 Msa1327770:intron 40.0%
TGGAAAAAGGAAGGAACAAG+TGG + chr8_4:45206223-45206242 Msa1327770:intron 40.0%
! CAAAAAAGTGAATTCGGTGG+CGG + chr8_4:45206412-45206431 Msa1327770:intron 40.0%
CGGATCTTGCCGAAAATATT+GGG + chr8_4:45206432-45206451 Msa1327770:intron 40.0%
GGATCTTGCCGAAAATATTG+GGG + chr8_4:45206433-45206452 Msa1327770:intron 40.0%
GATCTTGCCGAAAATATTGG+GGG + chr8_4:45206434-45206453 Msa1327770:intron 40.0%
ATCTTGCCGAAAATATTGGG+GGG + chr8_4:45206435-45206454 Msa1327770:intron 40.0%
!! GAATCGCGTTTTGATACATG+AGG + chr8_4:45206594-45206613 Msa1327770:intron 40.0%
TTTGATACATGAGGATGGAG+AGG + chr8_4:45206603-45206622 Msa1327770:intron 40.0%
! TTTTGTCTGAGTCTCTCTCT+CGG - chr8_4:45206639-45206658 None:intergenic 40.0%
!! AAAATTATTAGGGGGTGCCA+CGG + chr8_4:45206718-45206737 Msa1327770:intron 40.0%
ACAAAAAATTCACACAGGGG+CGG - chr8_4:45206767-45206786 None:intergenic 40.0%
! ACTTTGTTTGGGAGTTTGGA+GGG - chr8_4:45206837-45206856 None:intergenic 40.0%
ACCGATGGAATATTGTGTTG+TGG + chr8_4:45206949-45206968 Msa1327770:intron 40.0%
AGCTTGAAGGGAAAGAAACT+TGG + chr8_4:45207013-45207032 Msa1327770:CDS 40.0%
TACGATGAACTCTCTCCAAA+CGG + chr8_4:45207100-45207119 Msa1327770:CDS 40.0%
CGTGTCTCTGAATCAGAAAA+TGG - chr8_4:45207211-45207230 None:intergenic 40.0%
TCATCAAGCAATGCAAGATG+AGG - chr8_4:45207271-45207290 None:intergenic 40.0%
ATCCTTCAGCTCCATAAACA+CGG - chr8_4:45207333-45207352 None:intergenic 40.0%
GATACCCTTTCACATCAGAA+AGG + chr8_4:45207350-45207369 Msa1327770:CDS 40.0%
GAACCCTTTCTGATGTGAAA+GGG - chr8_4:45207357-45207376 None:intergenic 40.0%
TGAACCCTTTCTGATGTGAA+AGG - chr8_4:45207358-45207377 None:intergenic 40.0%
ATCAAGAAGAGGAAGCTAAG+AGG + chr8_4:45207389-45207408 Msa1327770:CDS 40.0%
GGATGATATCACAAAGTCAC+GGG - chr8_4:45207449-45207468 None:intergenic 40.0%
CGGATGATATCACAAAGTCA+CGG - chr8_4:45207450-45207469 None:intergenic 40.0%
GACTTTGTGATATCATCCGA+TGG + chr8_4:45207451-45207470 Msa1327770:CDS 40.0%
GTATCTGTTGTGCACATGAA+AGG - chr8_4:45207570-45207589 None:intergenic 40.0%
ATACCTATCTCTGAGCTTGA+GGG + chr8_4:45207586-45207605 Msa1327770:CDS 40.0%
GGAGGTTTACAAAAAGCTGA+AGG + chr8_4:45207678-45207697 Msa1327770:CDS 40.0%
GTTCCAATAACAACCAAGGT+AGG - chr8_4:45207856-45207875 None:intergenic 40.0%
TGAACTCGATGAAATAGCGA+AGG + chr8_4:45207963-45207982 Msa1327770:CDS 40.0%
CATTGACAAAGATGCGAAGA+AGG + chr8_4:45208044-45208063 Msa1327770:CDS 40.0%
! TGGTATGCCTCAATGAGTTT+TGG - chr8_4:45208284-45208303 None:intergenic 40.0%
AAACAATGACGCACTTGAAG+TGG + chr8_4:45208319-45208338 Msa1327770:CDS 40.0%
! TGGTTTTCATCTCAAGTGAC+AGG + chr8_4:45208339-45208358 Msa1327770:CDS 40.0%
! GGTTTTCATCTCAAGTGACA+GGG + chr8_4:45208340-45208359 Msa1327770:CDS 40.0%
! AGTCGCAAATTCAAGGTATC+TGG + chr8_4:45208443-45208462 Msa1327770:CDS 40.0%
! CCTTTGCAATGTCATCCTTT+TGG - chr8_4:45208595-45208614 None:intergenic 40.0%
CCAAAAGGATGACATTGCAA+AGG + chr8_4:45208592-45208611 Msa1327770:CDS 40.0%
CGCAATGTTTATTGCTGTGA+TGG + chr8_4:45208671-45208690 Msa1327770:CDS 40.0%
TTATTGCTGTGATGGTTGTG+AGG + chr8_4:45208679-45208698 Msa1327770:CDS 40.0%
! GGAGACAAAGGAAGCATAAA+TGG + chr8_4:45208770-45208789 Msa1327770:CDS 40.0%
TCACAAACCCATCCATCTTT+GGG - chr8_4:45208815-45208834 None:intergenic 40.0%
ATCACAAACCCATCCATCTT+TGG - chr8_4:45208816-45208835 None:intergenic 40.0%
! AAAGATGGATGGGTTTGTGA+TGG + chr8_4:45208815-45208834 Msa1327770:CDS 40.0%
AACAAGCAGATTTCAGGCTT+TGG - chr8_4:45208852-45208871 None:intergenic 40.0%
TCTTTAGTCACTCACTCTCC+AGG + chr8_4:45205709-45205728 Msa1327770:five_prime_UTR 45.0%
GACTTTCTTCTTCGCAACAC+CGG + chr8_4:45205799-45205818 Msa1327770:CDS 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr8_4:45206182-45206201 Msa1327770:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG + chr8_4:45206183-45206202 Msa1327770:intron 45.0%
!! GAGGGGAGGATTTTGGAAAA+AGG + chr8_4:45206210-45206229 Msa1327770:intron 45.0%
ATAGAAGACATTGGGAGGAG+AGG + chr8_4:45206251-45206270 Msa1327770:intron 45.0%
TAGAAGACATTGGGAGGAGA+GGG + chr8_4:45206252-45206271 Msa1327770:intron 45.0%
GCGGATCTTGCCGAAAATAT+TGG + chr8_4:45206431-45206450 Msa1327770:intron 45.0%
GTCTCGTGTTTGAGCTATTG+TGG - chr8_4:45206535-45206554 None:intergenic 45.0%
GCGATTCTCACTTCTCATGT+TGG - chr8_4:45206581-45206600 None:intergenic 45.0%
!! CGCGTTTTGATACATGAGGA+TGG + chr8_4:45206598-45206617 Msa1327770:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - chr8_4:45206183-45206202 None:intergenic 45.0%
! GACTTTGTTTGGGAGTTTGG+AGG - chr8_4:45206838-45206857 None:intergenic 45.0%
ACAACCTCAAAGTCACCGTT+TGG - chr8_4:45207118-45207137 None:intergenic 45.0%
CTCAGCCGATAAAGATGATG+AGG + chr8_4:45207144-45207163 Msa1327770:CDS 45.0%
!!! GCTACTTTTCCAAGATGCCA+TGG + chr8_4:45207176-45207195 Msa1327770:CDS 45.0%
CTTGCATTGCTTGATGAAGC+TGG + chr8_4:45207274-45207293 Msa1327770:CDS 45.0%
ATCCGTGTTTATGGAGCTGA+AGG + chr8_4:45207328-45207347 Msa1327770:CDS 45.0%
GATACCTATCTCTGAGCTTG+AGG + chr8_4:45207585-45207604 Msa1327770:intron 45.0%
TTTCCCTCAAGCTCAGAGAT+AGG - chr8_4:45207592-45207611 None:intergenic 45.0%
TTGAGAGGCAAGGATAACCA+AGG - chr8_4:45207784-45207803 None:intergenic 45.0%
TTGGTTATCCTTGCCTCTCA+AGG + chr8_4:45207783-45207802 Msa1327770:CDS 45.0%
CTCCCTACCTTGGTTGTTAT+TGG + chr8_4:45207850-45207869 Msa1327770:CDS 45.0%
ATCAACCCCATGATCCTCAA+TGG - chr8_4:45207914-45207933 None:intergenic 45.0%
! AAGTGTTTGAGATGCCTCCT+TGG - chr8_4:45207989-45208008 None:intergenic 45.0%
!!! CTTGAGTCAGTTTTGGTGTC+TGG + chr8_4:45208006-45208025 Msa1327770:CDS 45.0%
! TTGGAAGAAAAGCACGGCAT+GGG - chr8_4:45208265-45208284 None:intergenic 45.0%
! TTTGGAAGAAAAGCACGGCA+TGG - chr8_4:45208266-45208285 None:intergenic 45.0%
AATTCTTTGCGGGAATGCCA+TGG + chr8_4:45208381-45208400 Msa1327770:CDS 45.0%
TGTGATGGTTGTGAGGATGA+GGG + chr8_4:45208686-45208705 Msa1327770:CDS 45.0%
GTGAGGATGAGGGAGATAAT+TGG + chr8_4:45208696-45208715 Msa1327770:CDS 45.0%
! AGGAAGCATAAATGGTGCCA+AGG + chr8_4:45208778-45208797 Msa1327770:CDS 45.0%
TTTGGGCTTCTCTTCTTCCT+TGG - chr8_4:45208798-45208817 None:intergenic 45.0%
GAAGAAGAGAAGCCCAAAGA+TGG + chr8_4:45208800-45208819 Msa1327770:CDS 45.0%
AAGAGAAGCCCAAAGATGGA+TGG + chr8_4:45208804-45208823 Msa1327770:CDS 45.0%
AGAGAAGCCCAAAGATGGAT+GGG + chr8_4:45208805-45208824 Msa1327770:CDS 45.0%
AATCTTGTGCACGAGTCATC+AGG + chr8_4:45209000-45209019 Msa1327770:three_prime_UTR 45.0%
!! AATATAATAACAATATAAAT+TGG - chr8_4:45206329-45206348 None:intergenic 5.0%
!! TACAAAAAAAAAAAATTATT+AGG + chr8_4:45206707-45206726 Msa1327770:intron 5.0%
!! ACAAAAAAAAAAAATTATTA+GGG + chr8_4:45206708-45206727 Msa1327770:intron 5.0%
!!! ATTAATAACAATTTTTTTTT+TGG - chr8_4:45208155-45208174 None:intergenic 5.0%
! TATAGGAGTGGAAAGCGTGG+AGG - chr8_4:45205643-45205662 None:intergenic 50.0%
GAACACAGACTAGGCGAACA+AGG - chr8_4:45205676-45205695 None:intergenic 50.0%
CACTCACTCTCCAGGAACAA+TGG + chr8_4:45205717-45205736 Msa1327770:exon 50.0%
TCACTCTCCAGGAACAATGG+CGG + chr8_4:45205720-45205739 Msa1327770:exon 50.0%
ACAGAATCCGCCATTGTTCC+TGG - chr8_4:45205730-45205749 None:intergenic 50.0%
CAGTTGTAGTACCTGATCGC+CGG - chr8_4:45205821-45205840 None:intergenic 50.0%
! GAGAAGTAACGGAGTTACGG+TGG - chr8_4:45205845-45205864 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr8_4:45206181-45206200 Msa1327770:intron 50.0%
! ACATTGGGAGGAGAGGGTTT+TGG + chr8_4:45206258-45206277 Msa1327770:intron 50.0%
! ACCGCACCCCCCAATATTTT+CGG - chr8_4:45206444-45206463 None:intergenic 50.0%
TACATGAGGATGGAGAGGAG+AGG + chr8_4:45206608-45206627 Msa1327770:intron 50.0%
ACATGAGGATGGAGAGGAGA+GGG + chr8_4:45206609-45206628 Msa1327770:intron 50.0%
TTTGGGAGTTTGGAGGGGAA+GGG - chr8_4:45206831-45206850 None:intergenic 50.0%
GTTGGAGTGAATCCTCGACA+CGG - chr8_4:45207067-45207086 None:intergenic 50.0%
TCGAGGATTCACTCCAACGT+TGG + chr8_4:45207069-45207088 Msa1327770:CDS 50.0%
AGGATTCACTCCAACGTTGG+TGG + chr8_4:45207072-45207091 Msa1327770:CDS 50.0%
! ATTCACTCCAACGTTGGTGG+AGG + chr8_4:45207075-45207094 Msa1327770:CDS 50.0%
CTCTCCAAACGGTGACTTTG+AGG + chr8_4:45207111-45207130 Msa1327770:CDS 50.0%
! CTTTTCCAAGATGCCATGGC+TGG + chr8_4:45207180-45207199 Msa1327770:CDS 50.0%
GAAAATGGGATAGCCAGCCA+TGG - chr8_4:45207196-45207215 None:intergenic 50.0%
GAGGAACCAGTCCTTGAGAT+CGG + chr8_4:45207408-45207427 Msa1327770:CDS 50.0%
CCAATACCGATCTCAAGGAC+TGG - chr8_4:45207417-45207436 None:intergenic 50.0%
CCAGTCCTTGAGATCGGTAT+TGG + chr8_4:45207414-45207433 Msa1327770:CDS 50.0%
AGAGGCCAATACCGATCTCA+AGG - chr8_4:45207422-45207441 None:intergenic 50.0%
GAGCTTGAGGGAAAGACAGT+TGG + chr8_4:45207598-45207617 Msa1327770:CDS 50.0%
!! GGTTTTGTCCTTGAGAGGCA+AGG - chr8_4:45207794-45207813 None:intergenic 50.0%
!! GCACAGGTTTTGTCCTTGAG+AGG - chr8_4:45207799-45207818 None:intergenic 50.0%
GCTATCAGTTCTCCCTACCT+TGG + chr8_4:45207840-45207859 Msa1327770:CDS 50.0%
TCTACATCCTAATGCCGCTG+AGG + chr8_4:45207888-45207907 Msa1327770:CDS 50.0%
ATGATCCTCAATGGCCTCAG+CGG - chr8_4:45207905-45207924 None:intergenic 50.0%
CTGAGGCCATTGAGGATCAT+GGG + chr8_4:45207905-45207924 Msa1327770:CDS 50.0%
TGAGGCCATTGAGGATCATG+GGG + chr8_4:45207906-45207925 Msa1327770:CDS 50.0%
CGATGAAATAGCGAAGGCCA+AGG + chr8_4:45207969-45207988 Msa1327770:CDS 50.0%
TGAAATAGCGAAGGCCAAGG+AGG + chr8_4:45207972-45207991 Msa1327770:CDS 50.0%
TCTGACACCGGAACCTGAAA+TGG - chr8_4:45208194-45208213 None:intergenic 50.0%
! GTTCCGGTGTCAGAGTTAGA+GGG + chr8_4:45208200-45208219 Msa1327770:CDS 50.0%
! TTCCGGTGTCAGAGTTAGAG+GGG + chr8_4:45208201-45208220 Msa1327770:CDS 50.0%
TTCCCCTCTAACTCTGACAC+CGG - chr8_4:45208206-45208225 None:intergenic 50.0%
! TGGAAGAAAAGCACGGCATG+GGG - chr8_4:45208264-45208283 None:intergenic 50.0%
GAGCTTCTTTCGTGACAGTC+TGG - chr8_4:45208502-45208521 None:intergenic 50.0%
ACTGTCACGAAAGAAGCTCG+AGG + chr8_4:45208503-45208522 Msa1327770:CDS 50.0%
AAAGAAGCTCGAGGTCTGGT+TGG + chr8_4:45208512-45208531 Msa1327770:CDS 50.0%
AAGAAGCTCGAGGTCTGGTT+GGG + chr8_4:45208513-45208532 Msa1327770:CDS 50.0%
! GAGGTCTGGTTGGGCTTTAT+GGG + chr8_4:45208522-45208541 Msa1327770:CDS 50.0%
! AGGTCTGGTTGGGCTTTATG+GGG + chr8_4:45208523-45208542 Msa1327770:CDS 50.0%
AGGATGACATTGCAAAGGGG+TGG + chr8_4:45208597-45208616 Msa1327770:CDS 50.0%
GTTTCATGCGTCACCTTCTC+AGG - chr8_4:45208623-45208642 None:intergenic 50.0%
CTGTGATGGTTGTGAGGATG+AGG + chr8_4:45208685-45208704 Msa1327770:CDS 50.0%
TCTCCATCCAAATTGTGCGC+TGG + chr8_4:45208748-45208767 Msa1327770:CDS 50.0%
CTCCATCCAAATTGTGCGCT+GGG + chr8_4:45208749-45208768 Msa1327770:CDS 50.0%
TTGTCTCCCAGCGCACAATT+TGG - chr8_4:45208758-45208777 None:intergenic 50.0%
AATTGTGCGCTGGGAGACAA+AGG + chr8_4:45208758-45208777 Msa1327770:CDS 50.0%
TGTTTGGGAGTTTGGAGGGG+AGG + chr8_4:45206186-45206205 Msa1327770:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG + chr8_4:45206187-45206206 Msa1327770:intron 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG + chr8_4:45206188-45206207 Msa1327770:intron 55.0%
!! TTGGGAGGAGAGGGTTTTGG+AGG + chr8_4:45206261-45206280 Msa1327770:intron 55.0%
GCCGAAAATATTGGGGGGTG+CGG + chr8_4:45206440-45206459 Msa1327770:intron 55.0%
CATGAGGATGGAGAGGAGAG+GGG + chr8_4:45206610-45206629 Msa1327770:intron 55.0%
ATGAGGATGGAGAGGAGAGG+GGG + chr8_4:45206611-45206630 Msa1327770:intron 55.0%
GGATCTCTATTGAGACCCCC+AGG - chr8_4:45206746-45206765 None:intergenic 55.0%
GTTTGGGAGTTTGGAGGGGA+AGG - chr8_4:45206187-45206206 None:intergenic 55.0%
TCGTAGACCTCCACCAACGT+TGG - chr8_4:45207085-45207104 None:intergenic 55.0%
GATAGCCAGCCATGGCATCT+TGG - chr8_4:45207188-45207207 None:intergenic 55.0%
CACAAAGTCACGGGAACGAG+AGG - chr8_4:45207440-45207459 None:intergenic 55.0%
TCAATGGCCTCAGCGGCATT+AGG - chr8_4:45207898-45207917 None:intergenic 55.0%
TAATGCCGCTGAGGCCATTG+AGG + chr8_4:45207897-45207916 Msa1327770:CDS 55.0%
GCTGAGGCCATTGAGGATCA+TGG + chr8_4:45207904-45207923 Msa1327770:CDS 55.0%
! GGTTCCGGTGTCAGAGTTAG+AGG + chr8_4:45208199-45208218 Msa1327770:intron 55.0%
!! AGTGGGCTGAGAAGTAGAGG+AGG - chr8_4:45208235-45208254 None:intergenic 55.0%
TCCTCTACTTCTCAGCCCAC+TGG + chr8_4:45208234-45208253 Msa1327770:CDS 55.0%
!! ACCAGTGGGCTGAGAAGTAG+AGG - chr8_4:45208238-45208257 None:intergenic 55.0%
! GGAAGAAAAGCACGGCATGG+GGG - chr8_4:45208263-45208282 None:intergenic 55.0%
ATCCCCAAGCTCGTGGCAAT+TGG + chr8_4:45208467-45208486 Msa1327770:CDS 55.0%
TCCCCAAGCTCGTGGCAATT+GGG + chr8_4:45208468-45208487 Msa1327770:CDS 55.0%
TTCGTGACAGTCTGGCCACT+TGG - chr8_4:45208494-45208513 None:intergenic 55.0%
CACGAAAGAAGCTCGAGGTC+TGG + chr8_4:45208508-45208527 Msa1327770:CDS 55.0%
CGAGGTCTGGTTGGGCTTTA+TGG + chr8_4:45208521-45208540 Msa1327770:CDS 55.0%
CTCCCAGCGCACAATTTGGA+TGG - chr8_4:45208754-45208773 None:intergenic 55.0%
TCTTCGCAACACCGGCGATC+AGG + chr8_4:45205807-45205826 Msa1327770:CDS 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG - chr8_4:45206826-45206845 None:intergenic 60.0%
GGAGTTTGGAGGGGAAGGGA+GGG - chr8_4:45206827-45206846 None:intergenic 60.0%
TCATGGTGTGGTCCGTGTCG+AGG + chr8_4:45207052-45207071 Msa1327770:CDS 60.0%
CTTTGCGGGAATGCCATGGC+TGG + chr8_4:45208385-45208404 Msa1327770:CDS 60.0%
!! CCAAAGGGAAGTGCCAGCCA+TGG - chr8_4:45208401-45208420 None:intergenic 60.0%
CCATGGCTGGCACTTCCCTT+TGG + chr8_4:45208398-45208417 Msa1327770:CDS 60.0%
ATCTGGCATCCCCAAGCTCG+TGG + chr8_4:45208460-45208479 Msa1327770:CDS 60.0%
GCCCAATTGCCACGAGCTTG+GGG - chr8_4:45208472-45208491 None:intergenic 60.0%
GGCCCAATTGCCACGAGCTT+GGG - chr8_4:45208473-45208492 None:intergenic 60.0%
TGGCCCAATTGCCACGAGCT+TGG - chr8_4:45208474-45208493 None:intergenic 60.0%
CTCGTGGCAATTGGGCCAAG+TGG + chr8_4:45208476-45208495 Msa1327770:CDS 60.0%
TGCAAAGGGGTGGCCTGAGA+AGG + chr8_4:45208607-45208626 Msa1327770:CDS 60.0%
GGAGTTTGGAGGGGAGGGGA+GGG + chr8_4:45206192-45206211 Msa1327770:intron 65.0%
GAGTTTGGAGGGGAGGGGAG+GGG + chr8_4:45206193-45206212 Msa1327770:intron 65.0%
! GGGAGGGGAGGGGAGGATTT+TGG + chr8_4:45206203-45206222 Msa1327770:intron 65.0%
! ATTGAGACCCCCAGGTGCCG+TGG - chr8_4:45206738-45206757 None:intergenic 65.0%
! AAGGGAGGGGAGGGCTTTGG+GGG - chr8_4:45206813-45206832 None:intergenic 65.0%
GAAGGGAGGGGAGGGCTTTG+GGG - chr8_4:45206814-45206833 None:intergenic 65.0%
GGAAGGGAGGGGAGGGCTTT+GGG - chr8_4:45206815-45206834 None:intergenic 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG - chr8_4:45206822-45206841 None:intergenic 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG - chr8_4:45206823-45206842 None:intergenic 65.0%
GGGAGTTTGGAGGGGAAGGG+AGG - chr8_4:45206828-45206847 None:intergenic 65.0%
ACGGCATGGGGGACACCAGT+GGG - chr8_4:45208252-45208271 None:intergenic 65.0%
GGGAGTTTGGAGGGGAGGGG+AGG + chr8_4:45206191-45206210 Msa1327770:intron 70.0%
TTTGGAGGGGAGGGGAGGGG+AGG + chr8_4:45206196-45206215 Msa1327770:intron 70.0%
!! TTAGGGGGTGCCACGGCACC+TGG + chr8_4:45206725-45206744 Msa1327770:intron 70.0%
!! TAGGGGGTGCCACGGCACCT+GGG + chr8_4:45206726-45206745 Msa1327770:intron 70.0%
!! AGGGGAGGGCTTTGGGGGGT+TGG - chr8_4:45206808-45206827 None:intergenic 70.0%
!! AGGGAGGGGAGGGCTTTGGG+GGG - chr8_4:45206812-45206831 None:intergenic 70.0%
GGGAAGGGAGGGGAGGGCTT+TGG - chr8_4:45206816-45206835 None:intergenic 70.0%
CACGGCATGGGGGACACCAG+TGG - chr8_4:45208253-45208272 None:intergenic 70.0%
!! AGGGGGTGCCACGGCACCTG+GGG + chr8_4:45206727-45206746 Msa1327770:intron 75.0%
!!! GGGGGTGCCACGGCACCTGG+GGG + chr8_4:45206728-45206747 Msa1327770:intron 80.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 45205604 45209050 45205604 ID=Msa1327770;Name=Msa1327770
chr8_4 mRNA 45205604 45209050 45205604 ID=Msa1327770-mRNA-1;Parent=Msa1327770;Name=Msa1327770-mRNA-1;_AED=0.07;_eAED=0.07;_QI=132|1|1|1|0.75|0.6|5|165|570
chr8_4 exon 45205604 45205828 45205604 ID=Msa1327770-mRNA-1:exon:12663;Parent=Msa1327770-mRNA-1
chr8_4 exon 45207001 45207480 45207001 ID=Msa1327770-mRNA-1:exon:12664;Parent=Msa1327770-mRNA-1
chr8_4 exon 45207586 45208065 45207586 ID=Msa1327770-mRNA-1:exon:12665;Parent=Msa1327770-mRNA-1
chr8_4 exon 45208200 45208969 45208200 ID=Msa1327770-mRNA-1:exon:12666;Parent=Msa1327770-mRNA-1
chr8_4 exon 45208996 45209050 45208996 ID=Msa1327770-mRNA-1:exon:12667;Parent=Msa1327770-mRNA-1
chr8_4 five_prime_UTR 45205604 45205735 45205604 ID=Msa1327770-mRNA-1:five_prime_utr;Parent=Msa1327770-mRNA-1
chr8_4 CDS 45205736 45205828 45205736 ID=Msa1327770-mRNA-1:cds;Parent=Msa1327770-mRNA-1
chr8_4 CDS 45207001 45207480 45207001 ID=Msa1327770-mRNA-1:cds;Parent=Msa1327770-mRNA-1
chr8_4 CDS 45207586 45208065 45207586 ID=Msa1327770-mRNA-1:cds;Parent=Msa1327770-mRNA-1
chr8_4 CDS 45208200 45208859 45208200 ID=Msa1327770-mRNA-1:cds;Parent=Msa1327770-mRNA-1
chr8_4 three_prime_UTR 45208860 45208969 45208860 ID=Msa1327770-mRNA-1:three_prime_utr;Parent=Msa1327770-mRNA-1
chr8_4 three_prime_UTR 45208996 45209050 45208996 ID=Msa1327770-mRNA-1:three_prime_utr;Parent=Msa1327770-mRNA-1
Gene Sequence

>Msa1327770

ATGGCGGATTCTGTTGCTGATGTCACTCACGAAGTTCACTCTATTCTCTCTTCTCCTGATAGAGACTTTCTTCTTCGCAACACCGGCGATCAGGTTAAAATTGATAGCTTGAAGGGAAAGAAACTTGGTTTCTATTTTTCAGCATCATGGTGTGGTCCGTGTCGAGGATTCACTCCAACGTTGGTGGAGGTCTACGATGAACTCTCTCCAAACGGTGACTTTGAGGTTGTTTTTGTCTCAGCCGATAAAGATGATGAGGCTTTTAAGAGCTACTTTTCCAAGATGCCATGGCTGGCTATCCCATTTTCTGATTCAGAGACACGCAGTCGCCTTGATGAACTGTTTCATGTAAACGGAATTCCTCATCTTGCATTGCTTGATGAAGCTGGAAAAGTTATTACTGAAGATGGAGTTCACATTATCCGTGTTTATGGAGCTGAAGGATACCCTTTCACATCAGAAAGGGTTCAAGAGTTGAAAGATCAAGAAGAGGAAGCTAAGAGGAACCAGTCCTTGAGATCGGTATTGGCCTCTCGTTCCCGTGACTTTGTGATATCATCCGATGGAAATGAAATACCTATCTCTGAGCTTGAGGGAAAGACAGTTGGTTTGCACTTCTTTACGACTAAATACAAACCATGCACTCTATTTAATCAAAAGCTTAAGGAGGTTTACAAAAAGCTGAAGGAAAATGGGGAGAACTTTGAGATCGTCTTTATACCCTTAGATAATGAAGAAGAGTCATTCAAAAAAGAATTAGAAAGTGTGCCTTGGTTATCCTTGCCTCTCAAGGACAAAACCTGTGCGAAACTAATTCAATACTTTAAGCTATCAGTTCTCCCTACCTTGGTTGTTATTGGAACAGATGGGAAAACTCTACATCCTAATGCCGCTGAGGCCATTGAGGATCATGGGGTTGATGCGTATCCATTCACTCCTGAAAAGTTTTCTGAACTCGATGAAATAGCGAAGGCCAAGGAGGCATCTCAAACACTTGAGTCAGTTTTGGTGTCTGGCGATCAAGATTTTGTCATTGACAAAGATGCGAAGAAGGTTCCGGTGTCAGAGTTAGAGGGGAAAACTGTCCTCCTCTACTTCTCAGCCCACTGGTGTCCCCCATGCCGTGCTTTTCTTCCAAAACTCATTGAGGCATACCATAAGATTAAGGCACAAAACAATGACGCACTTGAAGTGGTTTTCATCTCAAGTGACAGGGATCAAGAATCCTTTAATGAATTCTTTGCGGGAATGCCATGGCTGGCACTTCCCTTTGGTGACACAAGAAAAGAATTCTTGAGTCGCAAATTCAAGGTATCTGGCATCCCCAAGCTCGTGGCAATTGGGCCAAGTGGCCAGACTGTCACGAAAGAAGCTCGAGGTCTGGTTGGGCTTTATGGGGCAGATGCTTATCCTTTCACTGAAGAGAGAATAAAAGAAATAGAGGCCCAAAAGGATGACATTGCAAAGGGGTGGCCTGAGAAGGTGACGCATGAAACACATGAGCACGAGCTTGTATTGTCGCGTCGCAATGTTTATTGCTGTGATGGTTGTGAGGATGAGGGAGATAATTGGTCATACTACTGTAAAGAGTGTGACTTTGATCTCCATCCAAATTGTGCGCTGGGAGACAAAGGAAGCATAAATGGTGCCAAGGAAGAAGAGAAGCCCAAAGATGGATGGGTTTGTGATGGAGATGTCTGCACCAAAGCCTGA

Protein sequence

>Msa1327770

MADSVADVTHEVHSILSSPDRDFLLRNTGDQVKIDSLKGKKLGFYFSASWCGPCRGFTPTLVEVYDELSPNGDFEVVFVSADKDDEAFKSYFSKMPWLAIPFSDSETRSRLDELFHVNGIPHLALLDEAGKVITEDGVHIIRVYGAEGYPFTSERVQELKDQEEEAKRNQSLRSVLASRSRDFVISSDGNEIPISELEGKTVGLHFFTTKYKPCTLFNQKLKEVYKKLKENGENFEIVFIPLDNEEESFKKELESVPWLSLPLKDKTCAKLIQYFKLSVLPTLVVIGTDGKTLHPNAAEAIEDHGVDAYPFTPEKFSELDEIAKAKEASQTLESVLVSGDQDFVIDKDAKKVPVSELEGKTVLLYFSAHWCPPCRAFLPKLIEAYHKIKAQNNDALEVVFISSDRDQESFNEFFAGMPWLALPFGDTRKEFLSRKFKVSGIPKLVAIGPSGQTVTKEARGLVGLYGADAYPFTEERIKEIEAQKDDIAKGWPEKVTHETHEHELVLSRRNVYCCDGCEDEGDNWSYYCKECDFDLHPNCALGDKGSINGAKEEEKPKDGWVCDGDVCTKA*