Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154780 | I3SR39 | 93.252 | 163 | 9 | 2 | 1 | 163 | 1 | 161 | 1.50e-99 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0154770 | Msa0154780 | 0.894018 | 3.656030e-75 | -8.615850e-47 |
| Msa0154780 | Msa0783270 | 0.804686 | 1.917948e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154780 | MtrunA17_Chr1g0204021 | 93.252 | 163 | 9 | 2 | 1 | 163 | 1 | 161 | 2.88e-103 | 300 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154780 | AT5G51880.1 | 62.500 | 112 | 39 | 1 | 52 | 163 | 20 | 128 | 3.18e-43 | 147 |
| Msa0154780 | AT1G36675.1 | 69.091 | 55 | 16 | 1 | 184 | 238 | 7 | 60 | 2.59e-15 | 73.6 |
Find 53 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCATAATTTGGTATATTT+TGG | 0.069340 | 1_4:+19541279 | None:intergenic |
| CCATAATATGGACGATAATT+TGG | 0.140906 | 1_4:+19541224 | None:intergenic |
| TTTGGAGGAAATCCATAATT+TGG | 0.164348 | 1_4:+19541269 | None:intergenic |
| CTGTTCTTGCTGATTCTATT+TGG | 0.169459 | 1_4:-19541725 | Msa0154780:CDS |
| GCTGATTCTATTTGGGATTC+TGG | 0.178268 | 1_4:-19541717 | Msa0154780:CDS |
| GGTTTGATGGAAGGCCATTT+TGG | 0.200195 | 1_4:+19542020 | None:intergenic |
| CCAAATTATCGTCCATATTA+TGG | 0.215518 | 1_4:-19541224 | Msa0154780:CDS |
| GAGGACGGCGTGATGAAATT+TGG | 0.229316 | 1_4:+19541251 | None:intergenic |
| CCCCAAAATATACCAAATTA+TGG | 0.258346 | 1_4:-19541281 | Msa0154780:CDS |
| GTGTGTATCGTTCCTCTATT+TGG | 0.276967 | 1_4:+19542111 | None:intergenic |
| GGCATCATTGATCCATAATA+TGG | 0.279521 | 1_4:+19541212 | None:intergenic |
| TGTTCTTGCTGATTCTATTT+GGG | 0.287853 | 1_4:-19541724 | Msa0154780:CDS |
| TTTACTCATCAAGGAAGTTT+AGG | 0.292415 | 1_4:-19541801 | Msa0154780:CDS |
| ATATCGTCAAGCGGTTCTTC+AGG | 0.324950 | 1_4:-19542145 | Msa0154780:CDS |
| AAACAACAACCGACCCAAAA+TGG | 0.337133 | 1_4:-19542034 | Msa0154780:CDS |
| ATTGAAACTGCTGAGGGAAT+TGG | 0.349090 | 1_4:-19541825 | Msa0154780:CDS |
| TAGAGATAATGATCGAATTT+CGG | 0.362145 | 1_4:-19541757 | Msa0154780:CDS |
| GAGGGTGTTTGAGATGAATA+AGG | 0.393284 | 1_4:+19541191 | None:intergenic |
| TGGAATAGAAGAATAATAAG+AGG | 0.403315 | 1_4:+19541172 | None:intergenic |
| TGGACGATAATTTGGATTAG+AGG | 0.408831 | 1_4:+19541232 | None:intergenic |
| CAAATAGAATCAGCAAGAAC+AGG | 0.457794 | 1_4:+19541726 | None:intergenic |
| TATTATTCTTCTATTCCAAT+GGG | 0.459779 | 1_4:-19541167 | Msa0154780:CDS |
| TTATTATTCTTCTATTCCAA+TGG | 0.461522 | 1_4:-19541168 | Msa0154780:CDS |
| ACGAGATTTCGATCTCTTCA+CGG | 0.469965 | 1_4:-19541970 | Msa0154780:intron |
| TTGATATCGAAGCTTACAAA+AGG | 0.479734 | 1_4:-19542190 | Msa0154780:CDS |
| CTATAAGCTTCACCTTTCGC+TGG | 0.500286 | 1_4:+19541777 | None:intergenic |
| AATTCATCAAGTCCGACATT+CGG | 0.501409 | 1_4:+19541131 | None:intergenic |
| GTAGGGAGGAAGGGAGCGTA+AGG | 0.501839 | 1_4:-19542085 | Msa0154780:CDS |
| GGAACGATACACACCTCGTA+GGG | 0.520041 | 1_4:-19542102 | Msa0154780:CDS |
| TCTACACAAATGGCTCTTGG+TGG | 0.528345 | 1_4:-19541098 | Msa0154780:CDS |
| TACACACCTCGTAGGGAGGA+AGG | 0.532568 | 1_4:-19542095 | Msa0154780:CDS |
| TATCGTCAAGCGGTTCTTCA+GGG | 0.532995 | 1_4:-19542144 | Msa0154780:CDS |
| ATGGCTCTTGGTGGCATGAT+CGG | 0.539749 | 1_4:-19541089 | Msa0154780:CDS |
| TGAATCCTTTGCATTTCAAG+TGG | 0.544206 | 1_4:+19541055 | None:intergenic |
| AATGAAAATGTTCCGAATGT+CGG | 0.566702 | 1_4:-19541143 | Msa0154780:CDS |
| GGGAGGAAGGGAGCGTAAGG+AGG | 0.570609 | 1_4:-19542082 | Msa0154780:CDS |
| GGAATAGAAGAATAATAAGA+GGG | 0.573965 | 1_4:+19541173 | None:intergenic |
| ACACACCTCGTAGGGAGGAA+GGG | 0.587796 | 1_4:-19542094 | Msa0154780:CDS |
| GGCATTCATTGAAACTGCTG+AGG | 0.593567 | 1_4:-19541832 | Msa0154780:CDS |
| GACGGCGTGATGAAATTTGG+AGG | 0.597793 | 1_4:+19541254 | None:intergenic |
| ATTCGAGGGAAAGCTGCTGT+AGG | 0.610629 | 1_4:-19541666 | Msa0154780:intron |
| GGAGCGACGAAACCAAATAG+AGG | 0.610911 | 1_4:-19542123 | Msa0154780:CDS |
| ATATCGAAGCTTACAAAAGG+CGG | 0.612848 | 1_4:-19542187 | Msa0154780:CDS |
| CGATAATTTGGATTAGAGGA+CGG | 0.617042 | 1_4:+19541236 | None:intergenic |
| GCATTCATTGAAACTGCTGA+GGG | 0.636238 | 1_4:-19541831 | Msa0154780:CDS |
| TTTCTGATATAAGAATTCGA+GGG | 0.649354 | 1_4:-19541680 | Msa0154780:CDS |
| AGGAACGATACACACCTCGT+AGG | 0.654477 | 1_4:-19542103 | Msa0154780:CDS |
| GCTCTTGGTGGCATGATCGG+TGG | 0.659106 | 1_4:-19541086 | Msa0154780:CDS |
| GGAAGTTTAGGTCCAGCGAA+AGG | 0.660755 | 1_4:-19541789 | Msa0154780:CDS |
| ACGATACACACCTCGTAGGG+AGG | 0.666557 | 1_4:-19542099 | Msa0154780:CDS |
| GGCGGTCTGAAATCGAAGAG+AGG | 0.678046 | 1_4:-19542169 | Msa0154780:CDS |
| ACGCTCCCTTCCTCCCTACG+AGG | 0.685966 | 1_4:+19542089 | None:intergenic |
| AAGAGAGGTATATCGTCAAG+CGG | 0.696308 | 1_4:-19542154 | Msa0154780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTACTAAAAAAAATATCAA+TGG | - | chr1_4:19541079-19541098 | Msa0154780:CDS | 10.0% |
| !! | ATTACTAAAAAAAATATCAA+TGG | - | chr1_4:19541079-19541098 | Msa0154780:CDS | 10.0% |
| !!! | TCAAAAAGAAATAATTTTGA+AGG | + | chr1_4:19541107-19541126 | None:intergenic | 15.0% |
| !! | AATAATTCACAGATAAAATT+GGG | + | chr1_4:19541407-19541426 | None:intergenic | 15.0% |
| !! | ATCCAAATATTAGATTATAT+AGG | - | chr1_4:19541675-19541694 | Msa0154780:CDS | 15.0% |
| !! | AACCTATATAATCTAATATT+TGG | + | chr1_4:19541680-19541699 | None:intergenic | 15.0% |
| !!! | TCAAAAAGAAATAATTTTGA+AGG | + | chr1_4:19541107-19541126 | None:intergenic | 15.0% |
| !! | AATAATTCACAGATAAAATT+GGG | + | chr1_4:19541407-19541426 | None:intergenic | 15.0% |
| !! | ATCCAAATATTAGATTATAT+AGG | - | chr1_4:19541675-19541694 | Msa0154780:CDS | 15.0% |
| !! | AACCTATATAATCTAATATT+TGG | + | chr1_4:19541680-19541699 | None:intergenic | 15.0% |
| !! | GAATAATTCACAGATAAAAT+TGG | + | chr1_4:19541408-19541427 | None:intergenic | 20.0% |
| !!! | AGTTGTATAAAAGATTTTGT+AGG | - | chr1_4:19541745-19541764 | Msa0154780:CDS | 20.0% |
| !!! | ATTTTCAATTTGGATTTCAA+TGG | - | chr1_4:19541805-19541824 | Msa0154780:CDS | 20.0% |
| !!! | TTTTGAAATCTATAGTTGTT+GGG | + | chr1_4:19541990-19542009 | None:intergenic | 20.0% |
| !!! | ATTTTGAAATCTATAGTTGT+TGG | + | chr1_4:19541991-19542010 | None:intergenic | 20.0% |
| !!! | TCCATAATTTGGTATATTTT+GGG | + | chr1_4:19542036-19542055 | None:intergenic | 20.0% |
| !!! | ATCCATAATTTGGTATATTT+TGG | + | chr1_4:19542037-19542056 | None:intergenic | 20.0% |
| !! | TTATTATTCTTCTATTCCAA+TGG | - | chr1_4:19542145-19542164 | Msa0154780:CDS | 20.0% |
| !! | TATTATTCTTCTATTCCAAT+GGG | - | chr1_4:19542146-19542165 | Msa0154780:CDS | 20.0% |
| !! | GAATAATTCACAGATAAAAT+TGG | + | chr1_4:19541408-19541427 | None:intergenic | 20.0% |
| !!! | AGTTGTATAAAAGATTTTGT+AGG | - | chr1_4:19541745-19541764 | Msa0154780:CDS | 20.0% |
| !!! | ATTTTCAATTTGGATTTCAA+TGG | - | chr1_4:19541805-19541824 | Msa0154780:CDS | 20.0% |
| !!! | TTTTGAAATCTATAGTTGTT+GGG | + | chr1_4:19541990-19542009 | None:intergenic | 20.0% |
| !!! | ATTTTGAAATCTATAGTTGT+TGG | + | chr1_4:19541991-19542010 | None:intergenic | 20.0% |
| !!! | TCCATAATTTGGTATATTTT+GGG | + | chr1_4:19542036-19542055 | None:intergenic | 20.0% |
| !!! | ATCCATAATTTGGTATATTT+TGG | + | chr1_4:19542037-19542056 | None:intergenic | 20.0% |
| !! | TTATTATTCTTCTATTCCAA+TGG | - | chr1_4:19542145-19542164 | Msa0154780:CDS | 20.0% |
| !! | TATTATTCTTCTATTCCAAT+GGG | - | chr1_4:19542146-19542165 | Msa0154780:CDS | 20.0% |
| !!! | CTTATTTTGATGATTTTTCC+AGG | - | chr1_4:19541427-19541446 | Msa0154780:intron | 25.0% |
| !! | CTTTTCATCTTATGAATCAA+AGG | - | chr1_4:19541460-19541479 | Msa0154780:intron | 25.0% |
| ! | TAGAGATAATGATCGAATTT+CGG | - | chr1_4:19541556-19541575 | Msa0154780:intron | 25.0% |
| !! | TTTTCTGATATAAGAATTCG+AGG | - | chr1_4:19541632-19541651 | Msa0154780:intron | 25.0% |
| ! | TTTCTGATATAAGAATTCGA+GGG | - | chr1_4:19541633-19541652 | Msa0154780:intron | 25.0% |
| !!! | CATGATTTTAAAAGACAATC+AGG | - | chr1_4:19541782-19541801 | Msa0154780:CDS | 25.0% |
| !!! | TAGAATTTTGGGTGTTAAAA+GGG | + | chr1_4:19541841-19541860 | None:intergenic | 25.0% |
| !! | NGGGTAATTAGTAGAATTTT+GGG | + | chr1_4:19541852-19541871 | None:intergenic | 25.0% |
| !! | NNGGGTAATTAGTAGAATTT+TGG | + | chr1_4:19541853-19541872 | None:intergenic | 25.0% |
| !! | CCATAATTTGGTATATTTTG+GGG | + | chr1_4:19542035-19542054 | None:intergenic | 25.0% |
| ! | GGAATAGAAGAATAATAAGA+GGG | + | chr1_4:19542143-19542162 | None:intergenic | 25.0% |
| ! | TGGAATAGAAGAATAATAAG+AGG | + | chr1_4:19542144-19542163 | None:intergenic | 25.0% |
| !! | TCTTGAATTTTCTACACAAA+TGG | - | chr1_4:19542205-19542224 | Msa0154780:CDS | 25.0% |
| !!! | CTTATTTTGATGATTTTTCC+AGG | - | chr1_4:19541427-19541446 | Msa0154780:intron | 25.0% |
| !! | CTTTTCATCTTATGAATCAA+AGG | - | chr1_4:19541460-19541479 | Msa0154780:intron | 25.0% |
| ! | TAGAGATAATGATCGAATTT+CGG | - | chr1_4:19541556-19541575 | Msa0154780:intron | 25.0% |
| !! | TTTTCTGATATAAGAATTCG+AGG | - | chr1_4:19541632-19541651 | Msa0154780:intron | 25.0% |
| ! | TTTCTGATATAAGAATTCGA+GGG | - | chr1_4:19541633-19541652 | Msa0154780:intron | 25.0% |
| !!! | CATGATTTTAAAAGACAATC+AGG | - | chr1_4:19541782-19541801 | Msa0154780:CDS | 25.0% |
| !!! | TAGAATTTTGGGTGTTAAAA+GGG | + | chr1_4:19541841-19541860 | None:intergenic | 25.0% |
| !! | NGGGTAATTAGTAGAATTTT+GGG | + | chr1_4:19541852-19541871 | None:intergenic | 25.0% |
| !! | NNGGGTAATTAGTAGAATTT+TGG | + | chr1_4:19541853-19541872 | None:intergenic | 25.0% |
| !! | CCATAATTTGGTATATTTTG+GGG | + | chr1_4:19542035-19542054 | None:intergenic | 25.0% |
| ! | GGAATAGAAGAATAATAAGA+GGG | + | chr1_4:19542143-19542162 | None:intergenic | 25.0% |
| ! | TGGAATAGAAGAATAATAAG+AGG | + | chr1_4:19542144-19542163 | None:intergenic | 25.0% |
| !! | TCTTGAATTTTCTACACAAA+TGG | - | chr1_4:19542205-19542224 | Msa0154780:CDS | 25.0% |
| TTGATATCGAAGCTTACAAA+AGG | - | chr1_4:19541123-19541142 | Msa0154780:CDS | 30.0% | |
| !!! | AAGATTGTTTTTGGGTTTGA+TGG | + | chr1_4:19541309-19541328 | None:intergenic | 30.0% |
| !! | GTGATGTGAAGATTGTTTTT+GGG | + | chr1_4:19541317-19541336 | None:intergenic | 30.0% |
| ! | AGTGATGTGAAGATTGTTTT+TGG | + | chr1_4:19541318-19541337 | None:intergenic | 30.0% |
| TGGGAAAAGAAAAAGAAGAA+GGG | + | chr1_4:19541388-19541407 | None:intergenic | 30.0% | |
| TTGGGAAAAGAAAAAGAAGA+AGG | + | chr1_4:19541389-19541408 | None:intergenic | 30.0% | |
| ATGAAAAGAAATTCTGAACC+TGG | + | chr1_4:19541448-19541467 | None:intergenic | 30.0% | |
| TTTACTCATCAAGGAAGTTT+AGG | - | chr1_4:19541512-19541531 | Msa0154780:intron | 30.0% | |
| !! | TGTTCTTGCTGATTCTATTT+GGG | - | chr1_4:19541589-19541608 | Msa0154780:intron | 30.0% |
| ! | GACAATCAGGATTTTCAATT+TGG | - | chr1_4:19541795-19541814 | Msa0154780:CDS | 30.0% |
| !! | GTAGAATTTTGGGTGTTAAA+AGG | + | chr1_4:19541842-19541861 | None:intergenic | 30.0% |
| ATCTATAGTTGTTGGGATTT+GGG | + | chr1_4:19541983-19542002 | None:intergenic | 30.0% | |
| AATCTATAGTTGTTGGGATT+TGG | + | chr1_4:19541984-19542003 | None:intergenic | 30.0% | |
| ! | AATGAATTTTCCAACCAACA+AGG | - | chr1_4:19542008-19542027 | Msa0154780:CDS | 30.0% |
| CCCCAAAATATACCAAATTA+TGG | - | chr1_4:19542032-19542051 | Msa0154780:CDS | 30.0% | |
| TTTGGAGGAAATCCATAATT+TGG | + | chr1_4:19542047-19542066 | None:intergenic | 30.0% | |
| CCATAATATGGACGATAATT+TGG | + | chr1_4:19542092-19542111 | None:intergenic | 30.0% | |
| CCAAATTATCGTCCATATTA+TGG | - | chr1_4:19542089-19542108 | Msa0154780:CDS | 30.0% | |
| AATGAAAATGTTCCGAATGT+CGG | - | chr1_4:19542170-19542189 | Msa0154780:CDS | 30.0% | |
| TTGATATCGAAGCTTACAAA+AGG | - | chr1_4:19541123-19541142 | Msa0154780:CDS | 30.0% | |
| !!! | AAGATTGTTTTTGGGTTTGA+TGG | + | chr1_4:19541309-19541328 | None:intergenic | 30.0% |
| !! | GTGATGTGAAGATTGTTTTT+GGG | + | chr1_4:19541317-19541336 | None:intergenic | 30.0% |
| ! | AGTGATGTGAAGATTGTTTT+TGG | + | chr1_4:19541318-19541337 | None:intergenic | 30.0% |
| TGGGAAAAGAAAAAGAAGAA+GGG | + | chr1_4:19541388-19541407 | None:intergenic | 30.0% | |
| TTGGGAAAAGAAAAAGAAGA+AGG | + | chr1_4:19541389-19541408 | None:intergenic | 30.0% | |
| ATGAAAAGAAATTCTGAACC+TGG | + | chr1_4:19541448-19541467 | None:intergenic | 30.0% | |
| TTTACTCATCAAGGAAGTTT+AGG | - | chr1_4:19541512-19541531 | Msa0154780:intron | 30.0% | |
| !! | TGTTCTTGCTGATTCTATTT+GGG | - | chr1_4:19541589-19541608 | Msa0154780:intron | 30.0% |
| ! | GACAATCAGGATTTTCAATT+TGG | - | chr1_4:19541795-19541814 | Msa0154780:CDS | 30.0% |
| !! | GTAGAATTTTGGGTGTTAAA+AGG | + | chr1_4:19541842-19541861 | None:intergenic | 30.0% |
| ATCTATAGTTGTTGGGATTT+GGG | + | chr1_4:19541983-19542002 | None:intergenic | 30.0% | |
| AATCTATAGTTGTTGGGATT+TGG | + | chr1_4:19541984-19542003 | None:intergenic | 30.0% | |
| ! | AATGAATTTTCCAACCAACA+AGG | - | chr1_4:19542008-19542027 | Msa0154780:CDS | 30.0% |
| CCCCAAAATATACCAAATTA+TGG | - | chr1_4:19542032-19542051 | Msa0154780:CDS | 30.0% | |
| TTTGGAGGAAATCCATAATT+TGG | + | chr1_4:19542047-19542066 | None:intergenic | 30.0% | |
| CCATAATATGGACGATAATT+TGG | + | chr1_4:19542092-19542111 | None:intergenic | 30.0% | |
| CCAAATTATCGTCCATATTA+TGG | - | chr1_4:19542089-19542108 | Msa0154780:CDS | 30.0% | |
| AATGAAAATGTTCCGAATGT+CGG | - | chr1_4:19542170-19542189 | Msa0154780:CDS | 30.0% | |
| ATATCGAAGCTTACAAAAGG+CGG | - | chr1_4:19541126-19541145 | Msa0154780:CDS | 35.0% | |
| GTAAGGAGGAAGAGAAAAAT+GGG | - | chr1_4:19541245-19541264 | Msa0154780:CDS | 35.0% | |
| !!! | TTGTTTTTGGGTTTGATGGA+AGG | + | chr1_4:19541305-19541324 | None:intergenic | 35.0% |
| !!! | GGAATTGGTTTTACTCATCA+AGG | - | chr1_4:19541503-19541522 | Msa0154780:intron | 35.0% |
| CAAATAGAATCAGCAAGAAC+AGG | + | chr1_4:19541590-19541609 | None:intergenic | 35.0% | |
| !! | CTGTTCTTGCTGATTCTATT+TGG | - | chr1_4:19541588-19541607 | Msa0154780:intron | 35.0% |
| ! | CGATAATTTGGATTAGAGGA+CGG | + | chr1_4:19542080-19542099 | None:intergenic | 35.0% |
| ! | TGGACGATAATTTGGATTAG+AGG | + | chr1_4:19542084-19542103 | None:intergenic | 35.0% |
| GGCATCATTGATCCATAATA+TGG | + | chr1_4:19542104-19542123 | None:intergenic | 35.0% | |
| ! | GGAACATTTTCATTTCCCAT+TGG | + | chr1_4:19542164-19542183 | None:intergenic | 35.0% |
| AATTCATCAAGTCCGACATT+CGG | + | chr1_4:19542185-19542204 | None:intergenic | 35.0% | |
| ! | TTTTCTACACAAATGGCTCT+TGG | - | chr1_4:19542212-19542231 | Msa0154780:CDS | 35.0% |
| ATATCGAAGCTTACAAAAGG+CGG | - | chr1_4:19541126-19541145 | Msa0154780:CDS | 35.0% | |
| GTAAGGAGGAAGAGAAAAAT+GGG | - | chr1_4:19541245-19541264 | Msa0154780:CDS | 35.0% | |
| !!! | TTGTTTTTGGGTTTGATGGA+AGG | + | chr1_4:19541305-19541324 | None:intergenic | 35.0% |
| !!! | GGAATTGGTTTTACTCATCA+AGG | - | chr1_4:19541503-19541522 | Msa0154780:intron | 35.0% |
| CAAATAGAATCAGCAAGAAC+AGG | + | chr1_4:19541590-19541609 | None:intergenic | 35.0% | |
| !! | CTGTTCTTGCTGATTCTATT+TGG | - | chr1_4:19541588-19541607 | Msa0154780:intron | 35.0% |
| ! | CGATAATTTGGATTAGAGGA+CGG | + | chr1_4:19542080-19542099 | None:intergenic | 35.0% |
| ! | TGGACGATAATTTGGATTAG+AGG | + | chr1_4:19542084-19542103 | None:intergenic | 35.0% |
| GGCATCATTGATCCATAATA+TGG | + | chr1_4:19542104-19542123 | None:intergenic | 35.0% | |
| ! | GGAACATTTTCATTTCCCAT+TGG | + | chr1_4:19542164-19542183 | None:intergenic | 35.0% |
| AATTCATCAAGTCCGACATT+CGG | + | chr1_4:19542185-19542204 | None:intergenic | 35.0% | |
| ! | TTTTCTACACAAATGGCTCT+TGG | - | chr1_4:19542212-19542231 | Msa0154780:CDS | 35.0% |
| ! | AAGAGAGGTATATCGTCAAG+CGG | - | chr1_4:19541159-19541178 | Msa0154780:CDS | 40.0% |
| GTGTGTATCGTTCCTCTATT+TGG | + | chr1_4:19541205-19541224 | None:intergenic | 40.0% | |
| CGTAAGGAGGAAGAGAAAAA+TGG | - | chr1_4:19541244-19541263 | Msa0154780:CDS | 40.0% | |
| AAACAACAACCGACCCAAAA+TGG | - | chr1_4:19541279-19541298 | Msa0154780:CDS | 40.0% | |
| !! | GTTTGATGGAAGGCCATTTT+GGG | + | chr1_4:19541295-19541314 | None:intergenic | 40.0% |
| ACGAGATTTCGATCTCTTCA+CGG | - | chr1_4:19541343-19541362 | Msa0154780:intron | 40.0% | |
| GCATTCATTGAAACTGCTGA+GGG | - | chr1_4:19541482-19541501 | Msa0154780:intron | 40.0% | |
| ATTGAAACTGCTGAGGGAAT+TGG | - | chr1_4:19541488-19541507 | Msa0154780:intron | 40.0% | |
| ! | GCTGATTCTATTTGGGATTC+TGG | - | chr1_4:19541596-19541615 | Msa0154780:intron | 40.0% |
| !! | GTATATTTTGGGGACCTTGT+TGG | + | chr1_4:19542025-19542044 | None:intergenic | 40.0% |
| !! | GAGGGTGTTTGAGATGAATA+AGG | + | chr1_4:19542125-19542144 | None:intergenic | 40.0% |
| ! | AAGAGAGGTATATCGTCAAG+CGG | - | chr1_4:19541159-19541178 | Msa0154780:CDS | 40.0% |
| GTGTGTATCGTTCCTCTATT+TGG | + | chr1_4:19541205-19541224 | None:intergenic | 40.0% | |
| CGTAAGGAGGAAGAGAAAAA+TGG | - | chr1_4:19541244-19541263 | Msa0154780:CDS | 40.0% | |
| AAACAACAACCGACCCAAAA+TGG | - | chr1_4:19541279-19541298 | Msa0154780:CDS | 40.0% | |
| !! | GTTTGATGGAAGGCCATTTT+GGG | + | chr1_4:19541295-19541314 | None:intergenic | 40.0% |
| ACGAGATTTCGATCTCTTCA+CGG | - | chr1_4:19541343-19541362 | Msa0154780:intron | 40.0% | |
| GCATTCATTGAAACTGCTGA+GGG | - | chr1_4:19541482-19541501 | Msa0154780:intron | 40.0% | |
| ATTGAAACTGCTGAGGGAAT+TGG | - | chr1_4:19541488-19541507 | Msa0154780:intron | 40.0% | |
| ! | GCTGATTCTATTTGGGATTC+TGG | - | chr1_4:19541596-19541615 | Msa0154780:intron | 40.0% |
| !! | GTATATTTTGGGGACCTTGT+TGG | + | chr1_4:19542025-19542044 | None:intergenic | 40.0% |
| !! | GAGGGTGTTTGAGATGAATA+AGG | + | chr1_4:19542125-19542144 | None:intergenic | 40.0% |
| ATATCGTCAAGCGGTTCTTC+AGG | - | chr1_4:19541168-19541187 | Msa0154780:CDS | 45.0% | |
| TATCGTCAAGCGGTTCTTCA+GGG | - | chr1_4:19541169-19541188 | Msa0154780:CDS | 45.0% | |
| ! | GGTTTGATGGAAGGCCATTT+TGG | + | chr1_4:19541296-19541315 | None:intergenic | 45.0% |
| GGCATTCATTGAAACTGCTG+AGG | - | chr1_4:19541481-19541500 | Msa0154780:intron | 45.0% | |
| CTATAAGCTTCACCTTTCGC+TGG | + | chr1_4:19541539-19541558 | None:intergenic | 45.0% | |
| !! | ATTTTGGGGACCTTGTTGGT+TGG | + | chr1_4:19542021-19542040 | None:intergenic | 45.0% |
| TCTACACAAATGGCTCTTGG+TGG | - | chr1_4:19542215-19542234 | Msa0154780:CDS | 45.0% | |
| ATATCGTCAAGCGGTTCTTC+AGG | - | chr1_4:19541168-19541187 | Msa0154780:CDS | 45.0% | |
| TATCGTCAAGCGGTTCTTCA+GGG | - | chr1_4:19541169-19541188 | Msa0154780:CDS | 45.0% | |
| ! | GGTTTGATGGAAGGCCATTT+TGG | + | chr1_4:19541296-19541315 | None:intergenic | 45.0% |
| GGCATTCATTGAAACTGCTG+AGG | - | chr1_4:19541481-19541500 | Msa0154780:intron | 45.0% | |
| CTATAAGCTTCACCTTTCGC+TGG | + | chr1_4:19541539-19541558 | None:intergenic | 45.0% | |
| !! | ATTTTGGGGACCTTGTTGGT+TGG | + | chr1_4:19542021-19542040 | None:intergenic | 45.0% |
| TCTACACAAATGGCTCTTGG+TGG | - | chr1_4:19542215-19542234 | Msa0154780:CDS | 45.0% | |
| GGAGCGACGAAACCAAATAG+AGG | - | chr1_4:19541190-19541209 | Msa0154780:CDS | 50.0% | |
| AGGAACGATACACACCTCGT+AGG | - | chr1_4:19541210-19541229 | Msa0154780:CDS | 50.0% | |
| GGAACGATACACACCTCGTA+GGG | - | chr1_4:19541211-19541230 | Msa0154780:CDS | 50.0% | |
| !! | GATGGAAGGCCATTTTGGGT+CGG | + | chr1_4:19541291-19541310 | None:intergenic | 50.0% |
| GGAAGTTTAGGTCCAGCGAA+AGG | - | chr1_4:19541524-19541543 | Msa0154780:intron | 50.0% | |
| ATTCGAGGGAAAGCTGCTGT+AGG | - | chr1_4:19541647-19541666 | Msa0154780:intron | 50.0% | |
| GACGGCGTGATGAAATTTGG+AGG | + | chr1_4:19542062-19542081 | None:intergenic | 50.0% | |
| GAGGACGGCGTGATGAAATT+TGG | + | chr1_4:19542065-19542084 | None:intergenic | 50.0% | |
| ! | ATGGCTCTTGGTGGCATGAT+CGG | - | chr1_4:19542224-19542243 | Msa0154780:exon | 50.0% |
| GGAGCGACGAAACCAAATAG+AGG | - | chr1_4:19541190-19541209 | Msa0154780:CDS | 50.0% | |
| AGGAACGATACACACCTCGT+AGG | - | chr1_4:19541210-19541229 | Msa0154780:CDS | 50.0% | |
| GGAACGATACACACCTCGTA+GGG | - | chr1_4:19541211-19541230 | Msa0154780:CDS | 50.0% | |
| !! | GATGGAAGGCCATTTTGGGT+CGG | + | chr1_4:19541291-19541310 | None:intergenic | 50.0% |
| GGAAGTTTAGGTCCAGCGAA+AGG | - | chr1_4:19541524-19541543 | Msa0154780:intron | 50.0% | |
| ATTCGAGGGAAAGCTGCTGT+AGG | - | chr1_4:19541647-19541666 | Msa0154780:intron | 50.0% | |
| GACGGCGTGATGAAATTTGG+AGG | + | chr1_4:19542062-19542081 | None:intergenic | 50.0% | |
| GAGGACGGCGTGATGAAATT+TGG | + | chr1_4:19542065-19542084 | None:intergenic | 50.0% | |
| ! | ATGGCTCTTGGTGGCATGAT+CGG | - | chr1_4:19542224-19542243 | Msa0154780:exon | 50.0% |
| ! | GGCGGTCTGAAATCGAAGAG+AGG | - | chr1_4:19541144-19541163 | Msa0154780:CDS | 55.0% |
| ACGATACACACCTCGTAGGG+AGG | - | chr1_4:19541214-19541233 | Msa0154780:CDS | 55.0% | |
| TACACACCTCGTAGGGAGGA+AGG | - | chr1_4:19541218-19541237 | Msa0154780:CDS | 55.0% | |
| ACACACCTCGTAGGGAGGAA+GGG | - | chr1_4:19541219-19541238 | Msa0154780:CDS | 55.0% | |
| ! | GGCGGTCTGAAATCGAAGAG+AGG | - | chr1_4:19541144-19541163 | Msa0154780:CDS | 55.0% |
| ACGATACACACCTCGTAGGG+AGG | - | chr1_4:19541214-19541233 | Msa0154780:CDS | 55.0% | |
| TACACACCTCGTAGGGAGGA+AGG | - | chr1_4:19541218-19541237 | Msa0154780:CDS | 55.0% | |
| ACACACCTCGTAGGGAGGAA+GGG | - | chr1_4:19541219-19541238 | Msa0154780:CDS | 55.0% | |
| ! | GTAGGGAGGAAGGGAGCGTA+AGG | - | chr1_4:19541228-19541247 | Msa0154780:CDS | 60.0% |
| ! | GCTCTTGGTGGCATGATCGG+TGG | - | chr1_4:19542227-19542246 | Msa0154780:exon | 60.0% |
| ! | GTAGGGAGGAAGGGAGCGTA+AGG | - | chr1_4:19541228-19541247 | Msa0154780:CDS | 60.0% |
| ! | GCTCTTGGTGGCATGATCGG+TGG | - | chr1_4:19542227-19542246 | Msa0154780:exon | 60.0% |
| ACGCTCCCTTCCTCCCTACG+AGG | + | chr1_4:19541227-19541246 | None:intergenic | 65.0% | |
| ! | GGGAGGAAGGGAGCGTAAGG+AGG | - | chr1_4:19541231-19541250 | Msa0154780:CDS | 65.0% |
| ACGCTCCCTTCCTCCCTACG+AGG | + | chr1_4:19541227-19541246 | None:intergenic | 65.0% | |
| ! | GGGAGGAAGGGAGCGTAAGG+AGG | - | chr1_4:19541231-19541250 | Msa0154780:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 19541070 | 19542265 | 19541070 | ID=Msa0154780;Name=Msa0154780 |
| chr1_4 | mRNA | 19541070 | 19542265 | 19541070 | ID=Msa0154780-mRNA-1;Parent=Msa0154780;Name=Msa0154780-mRNA-1;_AED=0.52;_eAED=0.52;_QI=28|0.5|0.33|0.66|1|1|3|0|240 |
| chr1_4 | exon | 19541070 | 19541305 | 19541070 | ID=Msa0154780-mRNA-1:exon:7204;Parent=Msa0154780-mRNA-1 |
| chr1_4 | exon | 19541667 | 19541886 | 19541667 | ID=Msa0154780-mRNA-1:exon:7203;Parent=Msa0154780-mRNA-1 |
| chr1_4 | exon | 19541971 | 19542265 | 19541971 | ID=Msa0154780-mRNA-1:exon:7202;Parent=Msa0154780-mRNA-1 |
| chr1_4 | five_prime_UTR | 19542238 | 19542265 | 19542238 | ID=Msa0154780-mRNA-1:five_prime_utr;Parent=Msa0154780-mRNA-1 |
| chr1_4 | CDS | 19541971 | 19542237 | 19541971 | ID=Msa0154780-mRNA-1:cds;Parent=Msa0154780-mRNA-1 |
| chr1_4 | CDS | 19541667 | 19541886 | 19541667 | ID=Msa0154780-mRNA-1:cds;Parent=Msa0154780-mRNA-1 |
| chr1_4 | CDS | 19541070 | 19541305 | 19541070 | ID=Msa0154780-mRNA-1:cds;Parent=Msa0154780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
